Query psy181
Match_columns 111
No_of_seqs 107 out of 180
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:32:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05817 Ribophorin_II: Oligos 100.0 1.7E-42 3.8E-47 298.2 13.3 109 1-109 528-636 (636)
2 KOG2447|consensus 100.0 5.9E-40 1.3E-44 258.7 10.4 107 1-107 178-285 (287)
3 TIGR00383 corA magnesium Mg(2+ 74.2 11 0.00025 29.4 6.0 31 30-63 267-297 (318)
4 PRK09546 zntB zinc transporter 73.4 15 0.00033 29.1 6.6 27 31-60 274-300 (324)
5 PRK11085 magnesium/nickel/coba 63.8 19 0.00042 29.2 5.4 32 30-64 265-296 (316)
6 cd03390 PAP2_containing_1_like 63.5 24 0.00053 25.9 5.5 36 5-43 1-36 (193)
7 COG2966 Uncharacterized conser 62.7 41 0.00088 26.6 6.8 21 5-25 111-131 (250)
8 KOG1303|consensus 57.7 11 0.00023 32.1 3.0 41 3-43 246-286 (437)
9 PF13828 DUF4190: Domain of un 57.6 21 0.00045 22.4 3.6 23 88-110 17-39 (62)
10 PRK10669 putative cation:proto 56.5 1.2E+02 0.0025 26.0 9.1 89 18-107 30-141 (558)
11 COG0598 CorA Mg2+ and Co2+ tra 56.0 28 0.00061 27.8 5.0 29 30-61 271-301 (322)
12 TIGR00932 2a37 transporter, mo 56.0 89 0.0019 23.8 9.1 38 69-106 90-127 (273)
13 PF01544 CorA: CorA-like Mg2+ 51.9 12 0.00026 28.3 2.2 22 30-54 243-264 (292)
14 PF11837 DUF3357: Domain of un 48.0 6 0.00013 27.2 0.0 39 1-39 7-48 (106)
15 PF05915 DUF872: Eukaryotic pr 43.6 1.1E+02 0.0024 21.4 6.2 27 19-45 41-67 (115)
16 cd01661 cbb3_Oxidase_I Cytochr 39.2 1.5E+02 0.0033 25.4 7.1 36 7-42 291-326 (493)
17 PRK03659 glutathione-regulated 37.7 2.8E+02 0.006 24.2 9.6 90 17-107 28-140 (601)
18 KOG2447|consensus 36.8 2.4E+02 0.0051 23.1 7.7 96 14-109 176-284 (287)
19 PRK03562 glutathione-regulated 34.4 3.2E+02 0.007 24.0 9.9 90 17-107 28-140 (621)
20 PRK11114 cellulose synthase re 34.3 93 0.002 28.1 5.3 42 70-111 714-755 (756)
21 CHL00031 psbT photosystem II p 34.1 19 0.00042 20.3 0.6 10 10-19 22-31 (33)
22 KOG3292|consensus 33.3 77 0.0017 24.3 3.9 33 14-46 130-162 (196)
23 COG4420 Predicted membrane pro 31.6 1.1E+02 0.0023 23.7 4.5 42 27-68 57-99 (191)
24 PF06210 DUF1003: Protein of u 30.7 1.6E+02 0.0034 20.4 4.9 37 33-69 9-46 (108)
25 COG1230 CzcD Co/Zn/Cd efflux s 27.8 3.4E+02 0.0073 22.1 8.8 44 60-104 166-209 (296)
26 KOG3030|consensus 27.6 1.7E+02 0.0038 24.0 5.4 38 5-45 50-87 (317)
27 PRK11875 psbT photosystem II r 27.5 31 0.00068 19.2 0.7 9 10-18 22-30 (31)
28 cd01662 Ubiquinol_Oxidase_I Ub 27.1 1.8E+02 0.004 24.9 5.7 37 7-43 282-318 (501)
29 TIGR02602 8TM_EpsH eight trans 27.0 3E+02 0.0065 21.3 8.8 69 33-106 17-90 (241)
30 PF01405 PsbT: Photosystem II 26.8 24 0.00053 19.3 0.2 6 11-16 23-28 (29)
31 PF05313 Pox_P21: Poxvirus P21 26.6 3E+02 0.0065 21.2 8.0 77 18-96 77-157 (189)
32 TIGR00540 hemY_coli hemY prote 25.2 3.7E+02 0.008 21.8 7.6 49 47-104 31-80 (409)
33 PRK14488 cbb3-type cytochrome 24.7 2.4E+02 0.0053 24.0 6.0 36 7-42 255-290 (473)
34 TIGR01000 bacteriocin_acc bact 23.6 78 0.0017 26.4 2.8 29 15-45 13-41 (457)
35 COG2165 PulG Type II secretory 22.8 1.3E+02 0.0027 19.8 3.3 32 77-108 9-40 (149)
36 cd00919 Heme_Cu_Oxidase_I Heme 22.7 3.3E+02 0.0072 22.7 6.4 36 7-42 276-311 (463)
37 COG2704 DcuB Anaerobic C4-dica 22.6 70 0.0015 27.5 2.3 28 56-83 289-316 (436)
38 PF01569 PAP2: PAP2 superfamil 22.4 2.3E+02 0.0049 18.3 5.6 46 61-106 55-107 (129)
39 PF04505 Dispanin: Interferon- 22.3 71 0.0015 20.8 1.9 30 75-104 18-47 (82)
40 PF11169 DUF2956: Protein of u 22.1 68 0.0015 22.5 1.8 15 30-44 83-97 (103)
41 TIGR03109 exosortase_1 exosort 21.6 4.1E+02 0.009 21.0 9.1 34 73-106 80-118 (267)
42 COG4539 Predicted membrane pro 21.1 1.8E+02 0.0039 22.1 4.0 33 14-46 122-154 (180)
43 TIGR02891 CtaD_CoxA cytochrome 21.0 2.6E+02 0.0055 24.0 5.4 43 7-49 282-326 (506)
44 TIGR02882 QoxB cytochrome aa3 20.3 4.9E+02 0.011 23.5 7.2 37 7-43 325-361 (643)
No 1
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=100.00 E-value=1.7e-42 Score=298.17 Aligned_cols=109 Identities=51% Similarity=0.863 Sum_probs=108.2
Q ss_pred CCCCCcceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHhhccH
Q psy181 1 MGKAKKKIHMFREAERRPPVFVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFGFFWLQLNM 80 (111)
Q Consensus 1 ~g~~pEI~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg~n~~~~p~~~~~~~F~~~l~~i~~lf~~Ywl~l~i 80 (111)
|||||||||+||+||||||++||++|+++|++||++|+++|.++|+|++|+|.++++++||++++||+++|++||++|||
T Consensus 528 y~~kpEI~H~Fr~~eK~pp~~vS~~F~~~vlapl~~Ll~~W~~lG~Nl~~l~~~~~~~~F~~~l~ai~glf~~Yw~~l~l 607 (636)
T PF05817_consen 528 YGPKPEIHHIFREPEKRPPKIVSLVFTGLVLAPLLVLLILWLKLGANLSNLPFSPSAILFHGGLGAIEGLFFLYWLGLNL 607 (636)
T ss_pred CCCCCceeeecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCCCchHHHHHHHHHHHHHHHHHHHHhccH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy181 81 FETLKYLFFLSIITFYTGNSLLSHIASSK 109 (111)
Q Consensus 81 F~tL~~~~~lg~~t~~~G~~~L~~~~~~R 109 (111)
||||+|++++|+||+++|+|+||++++||
T Consensus 608 FqTL~~~~~lg~~t~~~G~r~L~~~a~~r 636 (636)
T PF05817_consen 608 FQTLPYLAVLGAVTFLSGNRALRELAERR 636 (636)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 99999999999999999999999999998
No 2
>KOG2447|consensus
Probab=100.00 E-value=5.9e-40 Score=258.73 Aligned_cols=107 Identities=46% Similarity=0.831 Sum_probs=104.5
Q ss_pred CCCCCcceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcch-HHHHHHHHHHHHHHHHHHHHhhcc
Q psy181 1 MGKAKKKIHMFREAERRPPVFVSNLFTALVLLPILILFILWGKLGINISNFPFRL-SAIAFHLCLGGIFVLFGFFWLQLN 79 (111)
Q Consensus 1 ~g~~pEI~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg~n~~~~p~~~-~~~~F~~~l~~i~~lf~~Ywl~l~ 79 (111)
|||||||+|+||+||||||+.+|.+|+++|+.|+++|++.|.++|+|++|+|.++ +.+.||++++|++++|++||+++|
T Consensus 178 fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~vL~f~yWlqls 257 (287)
T KOG2447|consen 178 FGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGILVLFFVYWLQLS 257 (287)
T ss_pred cCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy181 80 MFETLKYLFFLSIITFYTGNSLLSHIAS 107 (111)
Q Consensus 80 iF~tL~~~~~lg~~t~~~G~~~L~~~~~ 107 (111)
|||||+|++++|++|++.|+|.||..++
T Consensus 258 mFqtL~yla~lg~~tflagnr~lra~~~ 285 (287)
T KOG2447|consen 258 MFQTLKYLAYLGAPTFLAGNRLLRAQGQ 285 (287)
T ss_pred HHHHHHHHHHHhhhHhhhhHHHHHhhhc
Confidence 9999999999999999999999996654
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=74.23 E-value=11 Score=29.41 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHH
Q psy181 30 VLLPILILFILWGKLGINISNFPFRLSAIAFHLC 63 (111)
Q Consensus 30 v~~p~~~Ll~~w~~lg~n~~~~p~~~~~~~F~~~ 63 (111)
+.+|.-++-+.| |-|++++|..-+...|..+
T Consensus 267 IflP~t~IaGiy---GMNf~~mP~l~~~~gy~~~ 297 (318)
T TIGR00383 267 IFIPLTFIAGIY---GMNFKFMPELNWKYGYPAV 297 (318)
T ss_pred HHHHHHHHHHHH---hCCcccCccccchhHHHHH
Confidence 455555555444 9999999987555555433
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=73.40 E-value=15 Score=29.15 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchHHHHH
Q psy181 31 LLPILILFILWGKLGINISNFPFRLSAIAF 60 (111)
Q Consensus 31 ~~p~~~Ll~~w~~lg~n~~~~p~~~~~~~F 60 (111)
..|.-++-+. -|-|++++|..-+...|
T Consensus 274 flPlT~IaGi---yGMNf~~mPel~~~~gy 300 (324)
T PRK09546 274 FLPTTFLTGL---FGVNLGGIPGGGWPFGF 300 (324)
T ss_pred HHHHHHHHhh---hccccCCCCCcCCcchH
Confidence 3455444444 49999999986433344
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=63.82 E-value=19 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHHHHHH
Q psy181 30 VLLPILILFILWGKLGINISNFPFRLSAIAFHLCL 64 (111)
Q Consensus 30 v~~p~~~Ll~~w~~lg~n~~~~p~~~~~~~F~~~l 64 (111)
+.+|.-++.+. -|.|++++|..-+...|..++
T Consensus 265 if~pptliagi---yGMNf~~mP~~~~~~g~~~~l 296 (316)
T PRK11085 265 VFLPPTLVASS---YGMNFEFMPELKWSFGYPGAI 296 (316)
T ss_pred HHHHHHHHHhh---cccccCCCCCCCCcHHHHHHH
Confidence 34455444444 489999999765555554333
No 6
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=63.53 E-value=24 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=23.1
Q ss_pred CcceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 5 KKKIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 5 pEI~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
|.|.|-++|+|.-|+...-. ..+..|+.+.++.+..
T Consensus 1 ~~~~~p~~~~~~i~~~~l~~---~~~~ip~~~~~~~~~~ 36 (193)
T cd03390 1 PSISYPFAESETVPTWLLVI---ISVGIPLLVIILISLF 36 (193)
T ss_pred CCcCCCCCCCcEEcHHHHHH---HHHHHHHHHHHHHHHH
Confidence 67888888887665555443 3356666666666653
No 7
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=62.67 E-value=41 Score=26.57 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=13.9
Q ss_pred CcceeccCCCCCCCchHHHHH
Q psy181 5 KKKIHMFREAERRPPVFVSNL 25 (111)
Q Consensus 5 pEI~H~Fr~~ek~pp~~is~~ 25 (111)
.+..+++++|.+.++..+-..
T Consensus 111 ~~l~~i~~~~~~y~~~l~~~~ 131 (250)
T COG2966 111 KKLDEIQKQPLRYSRWLVLLM 131 (250)
T ss_pred HHHHHhhhCccccccHHHHHH
Confidence 355678888888777655433
No 8
>KOG1303|consensus
Probab=57.74 E-value=11 Score=32.13 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=24.5
Q ss_pred CCCcceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 3 KAKKKIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 3 ~~pEI~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
-.|||+|+.|+|+|..-..+.-.......---+...+.|.+
T Consensus 246 v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aF 286 (437)
T KOG1303|consen 246 VLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAF 286 (437)
T ss_pred eeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56999999999999554333322222223333455666665
No 9
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=57.60 E-value=21 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhHHHHHHHhhcc
Q psy181 88 FFLSIITFYTGNSLLSHIASSKK 110 (111)
Q Consensus 88 ~~lg~~t~~~G~~~L~~~~~~R~ 110 (111)
.+.+++++..|+.+++|.+++++
T Consensus 17 ~~~~i~aiilG~ial~~i~r~~~ 39 (62)
T PF13828_consen 17 GLLGIVAIILGHIALRQIRRSGQ 39 (62)
T ss_pred HHhHHHHHHHHHHHHHHHhccCC
Confidence 67899999999999999988763
No 10
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.55 E-value=1.2e+02 Score=26.04 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHHHHH----------------HHHHHHHHhhcccC--CCCcchHHHHHH-----HHHHHHHHHHHHH
Q psy181 18 PPVFVSNLFTALVLLPIL----------------ILFILWGKLGINIS--NFPFRLSAIAFH-----LCLGGIFVLFGFF 74 (111)
Q Consensus 18 pp~~is~~F~~~v~~p~~----------------~Ll~~w~~lg~n~~--~~p~~~~~~~F~-----~~l~~i~~lf~~Y 74 (111)
-|.+++.+..++++-|.. ++.......|.+++ ++... ....+. ..+..+.+....|
T Consensus 30 ~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
T PRK10669 30 ISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV-KSIAIPGAIAQIAVATLLGMALSA 108 (558)
T ss_pred CCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888887776631 33334445565444 33111 111111 1122234456678
Q ss_pred HhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy181 75 WLQLNMFETLKYLFFLSIITFYTGNSLLSHIAS 107 (111)
Q Consensus 75 wl~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~~ 107 (111)
++++++-+.+.++..++.-..-.-.|.|+|...
T Consensus 109 ~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~ 141 (558)
T PRK10669 109 VLGWSLMTGIVFGLCLSTASTVVLLRALEERQL 141 (558)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 899999888888877777666666777777554
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=56.03 E-value=28 Score=27.82 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcc--hHHHHHH
Q psy181 30 VLLPILILFILWGKLGINISNFPFR--LSAIAFH 61 (111)
Q Consensus 30 v~~p~~~Ll~~w~~lg~n~~~~p~~--~~~~~F~ 61 (111)
+++|.-+..+.| |-|++.+|.- .+..++.
T Consensus 271 iflPpTlIagiy---GMNf~~mPel~~~~Gy~~~ 301 (322)
T COG0598 271 IFLPPTLITGFY---GMNFKGMPELDWPYGYPIA 301 (322)
T ss_pred HHHhhHHHHccc---ccCCCCCcCCCCcccHHHH
Confidence 345554445444 9999999865 3444443
No 12
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=55.99 E-value=89 Score=23.80 Aligned_cols=38 Identities=13% Similarity=-0.028 Sum_probs=30.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy181 69 VLFGFFWLQLNMFETLKYLFFLSIITFYTGNSLLSHIA 106 (111)
Q Consensus 69 ~lf~~Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~ 106 (111)
+....++.+++.-+.+-.+..++.-..-...+.++|..
T Consensus 90 ~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~ 127 (273)
T TIGR00932 90 GLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERG 127 (273)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 34467889999999999999888877777778888765
No 13
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=51.94 E-value=12 Score=28.27 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcc
Q psy181 30 VLLPILILFILWGKLGINISNFPFR 54 (111)
Q Consensus 30 v~~p~~~Ll~~w~~lg~n~~~~p~~ 54 (111)
+..|+-++-+ ..|-|++++|..
T Consensus 243 iflPlt~i~g---~fGMN~~~~p~~ 264 (292)
T PF01544_consen 243 IFLPLTFITG---IFGMNFKGMPEL 264 (292)
T ss_dssp HHHHHHHHTT---STTS-SS---SS
T ss_pred HHHHHHHHHH---HhhCCccCCCcc
Confidence 3455444443 358999999865
No 14
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=48.04 E-value=6 Score=27.22 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCCCcceeccCCC---CCCCchHHHHHHHHHHHHHHHHHHH
Q psy181 1 MGKAKKKIHMFREA---ERRPPVFVSNLFTALVLLPILILFI 39 (111)
Q Consensus 1 ~g~~pEI~H~Fr~~---ek~pp~~is~~F~~~v~~p~~~Ll~ 39 (111)
|-|+||=.|-=+.+ ..||.+.++.+|+.++++..++-++
T Consensus 7 Y~PLP~~~~~~~~~~~~~rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 7 YTPLPDSSESAPGPGGRRRRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCCCcccCCCCcCcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 56777777766665 6777888888888876655544444
No 15
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=43.64 E-value=1.1e+02 Score=21.37 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy181 19 PVFVSNLFTALVLLPILILFILWGKLG 45 (111)
Q Consensus 19 p~~is~~F~~~v~~p~~~Ll~~w~~lg 45 (111)
=+.+.+++.+.++-..++.++.....+
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888887777766666666555
No 16
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=39.19 E-value=1.5e+02 Score=25.44 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=30.4
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWG 42 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~ 42 (111)
.||.|-.|...--+.++.+||.++..|..+...-|.
T Consensus 291 ~HHl~~~~~p~~~~~l~~~~S~li~vPs~~~~~n~~ 326 (493)
T cd01661 291 PHHLHYTALPDWLQTLGMVFSVMLWMPSWAGMINGL 326 (493)
T ss_pred ccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699998886666677999999999999988887775
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.73 E-value=2.8e+02 Score=24.24 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHHHHH----------------HHHHHHHHHhhcccC--CCCcchHHHHHHHHHH-----HHHHHHHH
Q psy181 17 RPPVFVSNLFTALVLLPI----------------LILFILWGKLGINIS--NFPFRLSAIAFHLCLG-----GIFVLFGF 73 (111)
Q Consensus 17 ~pp~~is~~F~~~v~~p~----------------~~Ll~~w~~lg~n~~--~~p~~~~~~~F~~~l~-----~i~~lf~~ 73 (111)
+-|.++..+..++++.|. +++......+|..++ ++-. .....+..+.. ...+....
T Consensus 28 ~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~-~~~~~~~~g~~~v~~t~~~~~~~~ 106 (601)
T PRK03659 28 GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQ-LRRSIFGVGAAQVLLSAAVLAGLL 106 (601)
T ss_pred CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777662 233334445665444 3211 11112211111 11222345
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy181 74 FWLQLNMFETLKYLFFLSIITFYTGNSLLSHIAS 107 (111)
Q Consensus 74 Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~~ 107 (111)
|+++++.-..+-....++.-..-...+.|+|...
T Consensus 107 ~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~ 140 (601)
T PRK03659 107 MLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGM 140 (601)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6788887666655555543333334666766543
No 18
>KOG2447|consensus
Probab=36.82 E-value=2.4e+02 Score=23.14 Aligned_cols=96 Identities=15% Similarity=-0.005 Sum_probs=65.4
Q ss_pred CCCCCchHHHHHHHH------------HHHHHHHHHHHHHHHhhcccCCCCcchHHH-HHHHHHHHHHHHHHHHHhhccH
Q psy181 14 AERRPPVFVSNLFTA------------LVLLPILILFILWGKLGINISNFPFRLSAI-AFHLCLGGIFVLFGFFWLQLNM 80 (111)
Q Consensus 14 ~ek~pp~~is~~F~~------------~v~~p~~~Ll~~w~~lg~n~~~~p~~~~~~-~F~~~l~~i~~lf~~Ywl~l~i 80 (111)
++-.|-+.|+=+|.. .++.++.-|++.....+---.|...-+++- .+.++.+|+.++.+.|++-|.=
T Consensus 176 ~~fgPk~EI~HiFr~PeKRp~~~lS~iFt~iiv~pll~Llv~W~klg~Nv~n~pss~~s~~~Fh~gi~g~~vL~f~yWlq 255 (287)
T KOG2447|consen 176 DKFGPKPEISHIFRAPEKRPAKPLSDIFTGIIVSPLLGLLVLWLKLGANVSNFPSSPTSTLGFHAGIAGILVLFFVYWLQ 255 (287)
T ss_pred hccCcchhhhhhccCCCcCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 344455556666643 234444444444433333333554445555 4679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy181 81 FETLKYLFFLSIITFYTGNSLLSHIASSK 109 (111)
Q Consensus 81 F~tL~~~~~lg~~t~~~G~~~L~~~~~~R 109 (111)
.....-+.++...++.++-..=|=++..|
T Consensus 256 lsmFqtL~yla~lg~~tflagnr~lra~~ 284 (287)
T KOG2447|consen 256 LSMFQTLKYLAYLGAPTFLAGNRLLRAQG 284 (287)
T ss_pred HHHHHHHHHHHHHhhhHhhhhHHHHHhhh
Confidence 99999999999999998877766666554
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=34.44 E-value=3.2e+02 Score=24.02 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHHHHHHH----------------HHHHHHHHHhhcccC--CCCcchHHHHHH-----HHHHHHHHHHHH
Q psy181 17 RPPVFVSNLFTALVLLPI----------------LILFILWGKLGINIS--NFPFRLSAIAFH-----LCLGGIFVLFGF 73 (111)
Q Consensus 17 ~pp~~is~~F~~~v~~p~----------------~~Ll~~w~~lg~n~~--~~p~~~~~~~F~-----~~l~~i~~lf~~ 73 (111)
+-|.+++.+.+++++-|. +++......+|..++ ++-. .....+. ..+....+....
T Consensus 28 ~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~-~~~~~~~~g~~qv~~~~~~~~~~~ 106 (621)
T PRK03562 28 GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWK-LRRSIFGGGALQMVACGGLLGLFC 106 (621)
T ss_pred CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888777662 233334445565443 2211 1111111 111122233456
Q ss_pred HHhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy181 74 FWLQLNMFETLKYLFFLSIITFYTGNSLLSHIAS 107 (111)
Q Consensus 74 Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~~ 107 (111)
|+++++.-+.+-....++.-..-..-+.|+|...
T Consensus 107 ~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~ 140 (621)
T PRK03562 107 MLLGLRWQVALLIGLGLALSSTAIAMQAMNERNL 140 (621)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888888777766666643333334666666543
No 20
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=34.28 E-value=93 Score=28.12 Aligned_cols=42 Identities=12% Similarity=-0.087 Sum_probs=33.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccC
Q psy181 70 LFGFFWLQLNMFETLKYLFFLSIITFYTGNSLLSHIASSKKH 111 (111)
Q Consensus 70 lf~~Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~~~R~~ 111 (111)
.-.+||++.+-.-..-.+.+.++..-+.=.+.||.+++||.+
T Consensus 714 ~~l~~~ls~hp~~l~~~~~~~~~l~~~~~~~~Lr~~~~rRl~ 755 (756)
T PRK11114 714 ERLWWALSNHPVLLALLAALSVLLLALVLWRLLRRIARRRLG 755 (756)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 556778888877776666777777777788999999999963
No 21
>CHL00031 psbT photosystem II protein T
Probab=34.07 E-value=19 Score=20.25 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=7.7
Q ss_pred ccCCCCCCCc
Q psy181 10 MFREAERRPP 19 (111)
Q Consensus 10 ~Fr~~ek~pp 19 (111)
-||+|||-+.
T Consensus 22 ~FRePPri~k 31 (33)
T CHL00031 22 FFREPPKVPT 31 (33)
T ss_pred eecCCCCCCC
Confidence 3899988764
No 22
>KOG3292|consensus
Probab=33.27 E-value=77 Score=24.25 Aligned_cols=33 Identities=27% Similarity=0.647 Sum_probs=28.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy181 14 AERRPPVFVSNLFTALVLLPILILFILWGKLGI 46 (111)
Q Consensus 14 ~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg~ 46 (111)
=|||.|+.+-..--....+|+.+++=.-...|-
T Consensus 130 FEKR~PALlDNLlQsl~maP~Fv~lE~l~~~Gy 162 (196)
T KOG3292|consen 130 FEKRAPALLDNLLQSLLMAPFFVLLEVLSVFGY 162 (196)
T ss_pred ccccchHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 489999999999999999999999877776664
No 23
>COG4420 Predicted membrane protein [Function unknown]
Probab=31.56 E-value=1.1e+02 Score=23.66 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC-CCCcchHHHHHHHHHHHHH
Q psy181 27 TALVLLPILILFILWGKLGINIS-NFPFRLSAIAFHLCLGGIF 68 (111)
Q Consensus 27 ~~~v~~p~~~Ll~~w~~lg~n~~-~~p~~~~~~~F~~~l~~i~ 68 (111)
+...+....+++++|..++.-.. +.|..++...++-.+.|++
T Consensus 57 sw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~ 99 (191)
T COG4420 57 SWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTL 99 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHH
Confidence 44567778888999986654322 2566666666654444443
No 24
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.65 E-value=1.6e+02 Score=20.39 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhc-ccCCCCcchHHHHHHHHHHHHHH
Q psy181 33 PILILFILWGKLGI-NISNFPFRLSAIAFHLCLGGIFV 69 (111)
Q Consensus 33 p~~~Ll~~w~~lg~-n~~~~p~~~~~~~F~~~l~~i~~ 69 (111)
...++++.|..++. -..+.++.++-..++..+.|++.
T Consensus 9 ~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~A 46 (108)
T PF06210_consen 9 IFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEA 46 (108)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHH
Confidence 34556777875553 22223555665666655555554
No 25
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=27.80 E-value=3.4e+02 Score=22.13 Aligned_cols=44 Identities=9% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy181 60 FHLCLGGIFVLFGFFWLQLNMFETLKYLFFLSIITFYTGNSLLSH 104 (111)
Q Consensus 60 F~~~l~~i~~lf~~Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~ 104 (111)
.++.++.|..-.+.||.+|+..+.+--. +++..-+-+.-..+++
T Consensus 166 ~Lgsv~vIia~i~i~~~~w~~~Dpi~si-~i~~lil~~a~~l~k~ 209 (296)
T COG1230 166 ALGSVGVIIAAIVIRFTGWSWLDPILSI-VIALLILSSAWPLLKE 209 (296)
T ss_pred HHHHHHHHHHHHHHHHhCCCccchHHHH-HHHHHHHHHHHHHHHH
Confidence 3567888888999999999998876432 3334444444444443
No 26
>KOG3030|consensus
Probab=27.64 E-value=1.7e+02 Score=23.96 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=29.3
Q ss_pred CcceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy181 5 KKKIHMFREAERRPPVFVSNLFTALVLLPILILFILWGKLG 45 (111)
Q Consensus 5 pEI~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg 45 (111)
.-|.|=||++|..|+.. ++...++.|.++.++.+....
T Consensus 50 ~si~~Py~~~etI~~~~---L~~i~~~~P~~vI~v~e~~r~ 87 (317)
T KOG3030|consen 50 ESISYPYRENETIPPLL---LLAIAVLLPLLVILVVEFIRA 87 (317)
T ss_pred hhhcCcCCCCCccCHHH---HHHHHHHhhHHHHHHHHHHHH
Confidence 45788899999777664 466778889988888888644
No 27
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=27.54 E-value=31 Score=19.16 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=6.5
Q ss_pred ccCCCCCCC
Q psy181 10 MFREAERRP 18 (111)
Q Consensus 10 ~Fr~~ek~p 18 (111)
-||+|||-+
T Consensus 22 fFRepPri~ 30 (31)
T PRK11875 22 AFRDPPKID 30 (31)
T ss_pred hccCCCCCC
Confidence 389998754
No 28
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=27.11 E-value=1.8e+02 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=31.3
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
-||.|-.+-...-+.+..++|.++..|-.+-+..|..
T Consensus 282 ~HHm~~~g~~~~~~~~~~~~T~~i~vPs~~~~fnwl~ 318 (501)
T cd01662 282 VHHMFTTGAGALVNAFFSIATMIIAVPTGVKIFNWLF 318 (501)
T ss_pred ccceecCCCChHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4999997776677888889999999999888888874
No 29
>TIGR02602 8TM_EpsH eight transmembrane protein EpsH (proposed exosortase). Members of this family are integral membrane proteins with eight predicted transmembrane helices in common. Some members of this family have long trailing sequences past the region described by this model. This model does not include the region of the first predicted transmembrane region. The best characterized member is EpsH of Methylobacillus sp. 12S, where it is part of a locus associated with biosynthesis of the exopolysaccharide methanolan.
Probab=26.98 E-value=3e+02 Score=21.33 Aligned_cols=69 Identities=16% Similarity=0.324 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHH-HHHHHHHHHHHhhhHHHHHHH
Q psy181 33 PILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFGFFWLQ----LNMFETLK-YLFFLSIITFYTGNSLLSHIA 106 (111)
Q Consensus 33 p~~~Ll~~w~~lg~n~~~~p~~~~~~~F~~~l~~i~~lf~~Ywl~----l~iF~tL~-~~~~lg~~t~~~G~~~L~~~~ 106 (111)
|...+...|.+-. ++.+.|..++........++ ...|+++ ...++.+. ...++|......|.+.+|...
T Consensus 17 ~~i~~~l~w~~r~-~l~~~~~~~~~~g~~ll~~~----~~~~~~g~~~~~~~~~~~sl~~~l~g~~~~~~G~~~~r~~~ 90 (241)
T TIGR02602 17 IPFVAYLAWSKRE-RLSELPSRPSSLGLALLVLG----LAAYLLASVLSVTWMASLSLVALLAGSVLALFGFRAFRLLL 90 (241)
T ss_pred HHHHHHHHHHHHH-HhhcCCCCCchHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344455577633 23334444443332222222 2234444 34444444 344558888889999888764
No 30
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=26.80 E-value=24 Score=19.31 Aligned_cols=6 Identities=67% Similarity=1.099 Sum_probs=1.7
Q ss_pred cCCCCC
Q psy181 11 FREAER 16 (111)
Q Consensus 11 Fr~~ek 16 (111)
||+|||
T Consensus 23 FRePPr 28 (29)
T PF01405_consen 23 FREPPR 28 (29)
T ss_dssp SS----
T ss_pred ccCCCC
Confidence 888876
No 31
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=26.62 E-value=3e+02 Score=21.20 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred CchHHHHHHHHH--HHHHHHHHHHHHHHhhcccCCCCcch-HHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy181 18 PPVFVSNLFTAL--VLLPILILFILWGKLGINISNFPFRL-SAIA-FHLCLGGIFVLFGFFWLQLNMFETLKYLFFLSII 93 (111)
Q Consensus 18 pp~~is~~F~~~--v~~p~~~Ll~~w~~lg~n~~~~p~~~-~~~~-F~~~l~~i~~lf~~Ywl~l~iF~tL~~~~~lg~~ 93 (111)
-|+.+|+++.++ .+.|+..|.++.-. ...+.| |.+- +... -+..+.|++-++..--.+++.+.|..|.-..-+.
T Consensus 77 s~p~ialimi~iAs~llP~PsLVIaYCl-~mqi~~-~~~~~~~gMsIvcv~~Si~ti~~~~~s~s~~~~ti~yIiL~iLf 154 (189)
T PF05313_consen 77 STPLIALIMIIIASLLLPFPSLVIAYCL-SMQIYN-PGANNNVGMSIVCVIMSIITIIVNSVSGSSGAYTISYIILAILF 154 (189)
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHH-Hheeec-CCCcceehhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 466777777665 47888888887642 222212 2211 1111 2234455665665555567777777776555544
Q ss_pred HHH
Q psy181 94 TFY 96 (111)
Q Consensus 94 t~~ 96 (111)
.++
T Consensus 155 ~~Y 157 (189)
T PF05313_consen 155 CIY 157 (189)
T ss_pred HHh
Confidence 444
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.21 E-value=3.7e+02 Score=21.77 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=21.4
Q ss_pred ccCCCCcchHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy181 47 NISNFPFRLSAIAFHLCL-GGIFVLFGFFWLQLNMFETLKYLFFLSIITFYTGNSLLSH 104 (111)
Q Consensus 47 n~~~~p~~~~~~~F~~~l-~~i~~lf~~Ywl~l~iF~tL~~~~~lg~~t~~~G~~~L~~ 104 (111)
++++..-.+|...+.+.+ ..++++++.+|+ ...+++.|.-+.+-+.-|+
T Consensus 31 ~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~p~~~~~~~~~r~ 80 (409)
T TIGR00540 31 ETANRIIEMSITGLAIFFIIALAIIFAFEWG---------LRRFFRLGAHSRGWFSGRK 80 (409)
T ss_pred EECCEEEEeeHHHHHHHHHHHHHHHHHHHHH---------HHHHHHccHHHHHHHHHHH
Confidence 344443344555554333 333344455553 2233455555444444433
No 33
>PRK14488 cbb3-type cytochrome c oxidase subunit I; Provisional
Probab=24.70 E-value=2.4e+02 Score=23.99 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=31.1
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWG 42 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~ 42 (111)
.||.|-.+....-+.+..+||.++..|..+....|.
T Consensus 255 ~HH~f~~g~p~~~~~~~~~~S~li~vP~~~~~fn~~ 290 (473)
T PRK14488 255 PHHLHYTALPDWAQTLGMVFSLILLAPSWGGMINGL 290 (473)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999987777788999999999999988877775
No 34
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.58 E-value=78 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=17.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy181 15 ERRPPVFVSNLFTALVLLPILILFILWGKLG 45 (111)
Q Consensus 15 ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg 45 (111)
||+||++.. .+.. +++.+++.++.|...+
T Consensus 13 ~~~~~~~~~-~~~~-~~~~~~~~~~~WA~~~ 41 (457)
T TIGR01000 13 QKRYHNFST-LVIV-PIFLLLVFLVLFSLFA 41 (457)
T ss_pred HhcCCCcch-hHHH-HHHHHHHHHHHHHHhE
Confidence 567777774 3333 3334555677898776
No 35
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.83 E-value=1.3e+02 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=24.0
Q ss_pred hccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy181 77 QLNMFETLKYLFFLSIITFYTGNSLLSHIASS 108 (111)
Q Consensus 77 ~l~iF~tL~~~~~lg~~t~~~G~~~L~~~~~~ 108 (111)
|.||-|.|-.+.++|+.+....-+..+...+.
T Consensus 9 GFTLiElLVvl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 9 GFTLIELLVVLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 56778888888888888887777777666554
No 36
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=22.68 E-value=3.3e+02 Score=22.72 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=30.1
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWG 42 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~ 42 (111)
.||.|-.+....-+.+..++|..+..|..+....|.
T Consensus 276 ~HHl~~~~~~~~~~~~~~~~t~~i~vP~~~~~~~~~ 311 (463)
T cd00919 276 AHHMFTVGLPVDTRAYFTAATMIIAVPTGIKVFNWL 311 (463)
T ss_pred ccceeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999987777788888888899999987777665
No 37
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=22.61 E-value=70 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHH
Q psy181 56 SAIAFHLCLGGIFVLFGFFWLQLNMFET 83 (111)
Q Consensus 56 ~~~~F~~~l~~i~~lf~~Ywl~l~iF~t 83 (111)
+...|+.++.+.+.+|..=|++-++++.
T Consensus 289 ~~svFksGM~A~v~ifGiAWl~dTf~~~ 316 (436)
T COG2704 289 NGSVFKSGMIACVAIFGIAWLGDTFVSA 316 (436)
T ss_pred CcchhhhhhHHHHHHHhHHHHHHHHHHh
Confidence 4567888888888999999999988863
No 38
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=22.38 E-value=2.3e+02 Score=18.32 Aligned_cols=46 Identities=17% Similarity=0.438 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHH-------HHHHHHHHHHHHHHhhhHHHHHHH
Q psy181 61 HLCLGGIFVLFGFFWLQLNMFE-------TLKYLFFLSIITFYTGNSLLSHIA 106 (111)
Q Consensus 61 ~~~l~~i~~lf~~Ywl~l~iF~-------tL~~~~~lg~~t~~~G~~~L~~~~ 106 (111)
|...+.....+..++.+..-.. -+.....++.-.++.|.+..+++-
T Consensus 55 H~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~srv~~g~H~~~Dvi 107 (129)
T PF01569_consen 55 HAAIAAAFAFFLAYYLGSRGWIRILLFLLAIVLAFLVALSRVYLGAHFFSDVI 107 (129)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHSEEHHHHHHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred hhhhHHHHHhhhhhhhhccccccchhhHHHHHHHHHhhcCEEEcCeEehHHHH
Confidence 6666666666677777766665 666777778888888887777653
No 39
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.29 E-value=71 Score=20.80 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=20.7
Q ss_pred HhhccHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy181 75 WLQLNMFETLKYLFFLSIITFYTGNSLLSH 104 (111)
Q Consensus 75 wl~l~iF~tL~~~~~lg~~t~~~G~~~L~~ 104 (111)
|+.++++.|+.-...+|+++++...|+=+.
T Consensus 18 yl~~sI~s~l~Cc~PlGi~Ai~~s~kv~~~ 47 (82)
T PF04505_consen 18 YLVLSIFSTLCCCWPLGIVAIVYSSKVRSR 47 (82)
T ss_pred ceeHHHHHHHHHHhhHHHHHheechhhHHH
Confidence 556777777755556888888877766543
No 40
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.07 E-value=68 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHh
Q psy181 30 VLLPILILFILWGKL 44 (111)
Q Consensus 30 v~~p~~~Ll~~w~~l 44 (111)
-.+||.+|+++|.-.
T Consensus 83 ~~LPW~LL~lSW~gF 97 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGF 97 (103)
T ss_pred cchhHHHHHHHHHHH
Confidence 468999999999743
No 41
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=21.57 E-value=4.1e+02 Score=21.00 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHhh----ccHHHHHHHHHHH-HHHHHHhhhHHHHHHH
Q psy181 73 FFWLQ----LNMFETLKYLFFL-SIITFYTGNSLLSHIA 106 (111)
Q Consensus 73 ~Ywl~----l~iF~tL~~~~~l-g~~t~~~G~~~L~~~~ 106 (111)
.|++| ...++.+.....+ |.+-.+.|.+.+|...
T Consensus 80 ~~~lg~~~~v~~~~~~sl~~~l~g~~~~~~G~~~~r~~~ 118 (267)
T TIGR03109 80 AWLLGEAASVSLVAQLSLVALLVFSVIALLGPRVARALA 118 (267)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35555 5555655544444 7778888998888754
No 42
>COG4539 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=1.8e+02 Score=22.12 Aligned_cols=33 Identities=42% Similarity=0.652 Sum_probs=27.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy181 14 AERRPPVFVSNLFTALVLLPILILFILWGKLGI 46 (111)
Q Consensus 14 ~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~lg~ 46 (111)
=|||-|..+-..---++++|+.+++=+-..+|-
T Consensus 122 fEkRkPAlvDnL~qsLviaPlF~l~Et~f~lG~ 154 (180)
T COG4539 122 FEKRKPALVDNLVQSLVIAPLFILAETLFKLGL 154 (180)
T ss_pred cccCCchHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 389999999988877899999999887777774
No 43
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=20.99 E-value=2.6e+02 Score=24.01 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=30.5
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--hhcccC
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK--LGINIS 49 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~--lg~n~~ 49 (111)
-||.|-.+-...-+.+..++|.++..|..+-...|.. -|.+.+
T Consensus 282 ~HH~~~~g~~~~~~~~f~~~T~~i~vP~~~~~f~~~~tl~~~~~~ 326 (506)
T TIGR02891 282 AHHMFTTGMPPLALAFFSAATMLIAVPTGVKVFNWIATLWGGSIR 326 (506)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcC
Confidence 4899976655555667777777889999888888873 344444
No 44
>TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=20.27 E-value=4.9e+02 Score=23.52 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.7
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||+|-......-+.+..+.|.++..|..+-+..|..
T Consensus 325 ~HHmft~G~~~~~~~~f~~~Tm~IaIPtgvkvFnWl~ 361 (643)
T TIGR02882 325 VHHFFTMGNGALINSFFSITTMAIAIPTGVKIFNWLL 361 (643)
T ss_pred hhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899986544446667777788899999988888884
Done!