Query psy181
Match_columns 111
No_of_seqs 107 out of 180
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:32:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 64.3 13 0.00044 28.6 5.5 22 31-55 289-310 (339)
2 3arc_T Photosystem II reaction 45.4 7.5 0.00026 21.0 0.9 9 11-19 23-31 (32)
3 2iub_A CORA, divalent cation t 36.0 19 0.00064 27.9 2.2 17 44-60 323-339 (363)
4 3mk7_A Cytochrome C oxidase, C 25.1 73 0.0025 26.0 4.1 37 7-43 256-292 (474)
5 1v54_A Cytochrome C oxidase po 21.8 1.8E+02 0.0061 24.0 5.9 37 7-43 289-325 (514)
6 2gsm_A Cytochrome C oxidase su 21.7 1.7E+02 0.006 24.5 5.8 37 7-43 332-368 (566)
7 4b19_A PEPA1; toxin, toxin apo 20.7 73 0.0025 16.8 2.2 14 64-77 12-25 (30)
8 1fft_A Ubiquinol oxidase; elec 18.0 1.7E+02 0.0058 25.2 5.0 37 7-43 332-368 (663)
9 1s5r_A High mobility group box 16.8 73 0.0025 16.0 1.5 12 100-111 11-22 (26)
10 3o0r_B Nitric oxide reductase 15.5 4.6E+02 0.016 21.2 7.1 37 7-43 257-293 (465)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=64.29 E-value=13 Score=28.55 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcch
Q psy181 31 LLPILILFILWGKLGINISNFPFRL 55 (111)
Q Consensus 31 ~~p~~~Ll~~w~~lg~n~~~~p~~~ 55 (111)
.+|.-++-+. .|-|++++|..-
T Consensus 289 flP~T~IaGi---yGMNf~~mPel~ 310 (339)
T 4ev6_A 289 FAVPMWITGI---YGMNFSYLPLAN 310 (339)
T ss_dssp SSHHHHHHHH---TTCCCSCCTTSS
T ss_pred HHHHHHHHhh---ccCcCCCCCCcc
Confidence 4454444433 499999999863
No 2
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=45.40 E-value=7.5 Score=21.00 Aligned_cols=9 Identities=44% Similarity=0.626 Sum_probs=6.9
Q ss_pred cCCCCCCCc
Q psy181 11 FREAERRPP 19 (111)
Q Consensus 11 Fr~~ek~pp 19 (111)
||+|||-+.
T Consensus 23 FRePPri~~ 31 (32)
T 3arc_T 23 FREPPRITK 31 (32)
T ss_dssp TSCCCCCC-
T ss_pred hcCCCCCCC
Confidence 899998764
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=35.98 E-value=19 Score=27.95 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=1.7
Q ss_pred hhcccCCCCcchHHHHH
Q psy181 44 LGINISNFPFRLSAIAF 60 (111)
Q Consensus 44 lg~n~~~~p~~~~~~~F 60 (111)
.|-|++++|..-+...|
T Consensus 323 yGMNf~~mPel~~~~Gy 339 (363)
T 2iub_A 323 YGMNFEYMPELRWKWGY 339 (363)
T ss_dssp CC--------------C
T ss_pred hcccCCCCCcccCcHHH
Confidence 48899999975443343
No 4
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=25.09 E-value=73 Score=25.97 Aligned_cols=37 Identities=14% Similarity=-0.048 Sum_probs=31.1
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
-||.|-.+-...-+.+..++|.++..|..+....|..
T Consensus 256 ~HHmf~~g~~~~~~~~f~~~t~~i~vPt~i~vf~w~~ 292 (474)
T 3mk7_A 256 PHHLHYTALPDWAQSLGMVMSLILLAPSWGGMINGMM 292 (474)
T ss_dssp GGGGTTSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHG
T ss_pred cchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999865556778889999999999999999983
No 5
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2y69_A* 2ybb_L* 2zxw_A* 3abk_A* 3abl_A* 3abm_A* 3ag1_A* ...
Probab=21.76 E-value=1.8e+02 Score=23.99 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.4
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||.|-..-...-+....++|.++.+|..+-...|..
T Consensus 289 ~HHmf~~g~~~~~~~~f~~~T~iiavPtgikvf~wl~ 325 (514)
T 1v54_A 289 AHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLA 325 (514)
T ss_dssp GGGCTTSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccceecCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899987654445556667788889999887888873
No 6
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=21.68 E-value=1.7e+02 Score=24.51 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.8
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||.|-..-...-+....++|.++.+|..+-...|..
T Consensus 332 ~HHmf~~G~~~~~~~~f~~~TmiiavPtgikvFnwl~ 368 (566)
T 2gsm_A 332 AHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIA 368 (566)
T ss_dssp GGGCTTTTCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899986644445566667788889999888888873
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=20.71 E-value=73 Score=16.77 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhh
Q psy181 64 LGGIFVLFGFFWLQ 77 (111)
Q Consensus 64 l~~i~~lf~~Ywl~ 77 (111)
+.|...-++-||+.
T Consensus 12 isGcivalF~hWL~ 25 (30)
T 4b19_A 12 ISGCAIAFFSYWLS 25 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666677888885
No 8
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1
Probab=17.97 E-value=1.7e+02 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.5
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||+|-..-..--+....++|.++.+|..+-+..|..
T Consensus 332 ~HHmft~G~~~~~~~~f~~~TmiIaVPtgikvFnwl~ 368 (663)
T 1fft_A 332 LHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLF 368 (663)
T ss_dssp GGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899976544444556667788889999888888874
No 9
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=16.77 E-value=73 Score=15.98 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=8.9
Q ss_pred HHHHHHHhhccC
Q psy181 100 SLLSHIASSKKH 111 (111)
Q Consensus 100 ~~L~~~~~~R~~ 111 (111)
..|++.+++|.+
T Consensus 11 yvlssmar~r~a 22 (26)
T 1s5r_A 11 YVLSSMARQRRA 22 (26)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHhHHHHHHhhh
Confidence 467888888864
No 10
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=15.47 E-value=4.6e+02 Score=21.22 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=31.5
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||.|-.+....-+.+..+||.++.+|..+...-|..
T Consensus 257 ~HH~~~~g~p~~~~~~~~~~S~l~~vP~~~~~~n~~~ 293 (465)
T 3o0r_B 257 GHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFN 293 (465)
T ss_dssp GGGGSSSSSCTHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999988877777889999999999999988887763
Done!