Query psy181
Match_columns 111
No_of_seqs 107 out of 180
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 22:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy181.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/181hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtua1 f.24.1.1 (A:14-551) Ba 29.7 51 0.0037 25.7 6.0 37 7-43 319-355 (538)
2 d1ffta_ f.24.1.1 (A:) Cytochro 29.7 42 0.0031 25.7 5.5 37 7-43 281-317 (501)
3 d1r3jc_ f.14.1.1 (C:) Potassiu 25.7 55 0.004 19.1 4.5 24 88-111 80-103 (103)
4 d2iuba2 f.17.3.1 (A:286-349) M 23.5 29 0.0021 19.0 2.6 28 30-60 15-42 (64)
5 d1v54a_ f.24.1.1 (A:) Mitochon 19.7 99 0.0072 23.8 5.9 54 7-60 289-344 (514)
6 d2q0ta1 a.152.1.1 (A:1-257) Hy 11.7 83 0.006 21.4 3.1 32 80-111 224-255 (257)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 11.1 91 0.0066 14.5 2.5 19 27-45 8-26 (27)
8 d2fgga1 d.50.5.1 (A:4-87) Hypo 6.4 1.2E+02 0.0086 17.9 1.7 13 96-108 56-68 (84)
9 d1m40a_ e.3.1.1 (A:) beta-Lact 6.2 1.4E+02 0.01 19.3 2.3 27 6-32 30-56 (263)
10 d1wuda1 a.60.8.1 (A:530-606) H 5.6 1.4E+02 0.01 16.4 1.7 17 93-109 25-41 (77)
No 1
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=29.71 E-value=51 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=28.5
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||+|-......-+..-.+.+.++..|-.+....|..
T Consensus 319 ~HHmf~~g~~~~~~~~f~~~T~~IaiPs~i~vfnwl~ 355 (538)
T d3dtua1 319 AHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIA 355 (538)
T ss_dssp GGGCTTSSCCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hccccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5999987755555566667777889999999999983
No 2
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=29.67 E-value=42 Score=25.69 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=30.4
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK 43 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~ 43 (111)
.||.|-.+-...-+....+.+.++..|-..-+..|..
T Consensus 281 ~HH~~~~g~~~~~~~~~~~~T~~iaiPs~~~~f~w~~ 317 (501)
T d1ffta_ 281 LHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLF 317 (501)
T ss_dssp GGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhhhcccccChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899987766666777778888899999888888884
No 3
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=25.65 E-value=55 Score=19.08 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhHHHHHHHhhccC
Q psy181 88 FFLSIITFYTGNSLLSHIASSKKH 111 (111)
Q Consensus 88 ~~lg~~t~~~G~~~L~~~~~~R~~ 111 (111)
.+.+.++-..++...++-++||+|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~rr~h 103 (103)
T d1r3jc_ 80 TSFGLVTAALATWFVGREQERRGH 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666666777788888888876
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=23.47 E-value=29 Score=18.98 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcchHHHHH
Q psy181 30 VLLPILILFILWGKLGINISNFPFRLSAIAF 60 (111)
Q Consensus 30 v~~p~~~Ll~~w~~lg~n~~~~p~~~~~~~F 60 (111)
+..|.-.+-+ ..|-|++++|..-+...|
T Consensus 15 iflP~t~i~g---ifGMN~~~~P~~~~~~~~ 42 (64)
T d2iuba2 15 IFMPLTFIAG---IYGMNFEYMPELRWKWGY 42 (64)
T ss_dssp HHHHHHHHTT---SCC--------------C
T ss_pred HHHHHHHHHh---hhccCCCCCCCCCccHHH
Confidence 3445444432 348899988876544444
No 5
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.71 E-value=99 Score=23.78 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=35.6
Q ss_pred ceeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCCCcchHHHHH
Q psy181 7 KIHMFREAERRPPVFVSNLFTALVLLPILILFILWGK--LGINISNFPFRLSAIAF 60 (111)
Q Consensus 7 I~H~Fr~~ek~pp~~is~~F~~~v~~p~~~Ll~~w~~--lg~n~~~~p~~~~~~~F 60 (111)
.||+|-..-...-+.+..+.|.++..|-.+-...|.. .|.+.+.=+....++.|
T Consensus 289 ~HHmft~g~~~~~~~~f~~~T~~IaiPt~vkvfnwi~T~~~g~~~~~~~~l~~l~f 344 (514)
T d1v54a_ 289 AHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGF 344 (514)
T ss_dssp GGGCTTSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred ccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHH
Confidence 5899988654444566667788899999999999984 44444322333444444
No 6
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=11.75 E-value=83 Score=21.44 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccC
Q psy181 80 MFETLKYLFFLSIITFYTGNSLLSHIASSKKH 111 (111)
Q Consensus 80 iF~tL~~~~~lg~~t~~~G~~~L~~~~~~R~~ 111 (111)
|-+.+..+...|.++...|.+.|++.-+.|.+
T Consensus 224 i~eal~~~~~~G~~~~~~~~~~l~~~l~~~~a 255 (257)
T d2q0ta1 224 LMELLEIVSVTGIHGAELGAPLLEAALKRSGA 255 (257)
T ss_dssp HHHHHHHHGGGGGHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHhccc
Confidence 67788888888999999999999988777753
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.07 E-value=91 Score=14.49 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy181 27 TALVLLPILILFILWGKLG 45 (111)
Q Consensus 27 ~~~v~~p~~~Ll~~w~~lg 45 (111)
+++++..|-+-.+.|.+-|
T Consensus 8 ~llvvftwsiamvvwgrng 26 (27)
T d2e74h1 8 ALLVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhheeeeEEEccCC
Confidence 3456777777777886533
No 8
>d2fgga1 d.50.5.1 (A:4-87) Hypothetical protein Rv2632c/MT2708 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.38 E-value=1.2e+02 Score=17.94 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHhh
Q psy181 96 YTGNSLLSHIASS 108 (111)
Q Consensus 96 ~~G~~~L~~~~~~ 108 (111)
+.+.|+|++++.+
T Consensus 56 lA~ARAL~dLa~q 68 (84)
T d2fgga1 56 LAIARALSDLANQ 68 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888888764
No 9
>d1m40a_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli, TEM-1 [TaxId: 562]}
Probab=6.16 E-value=1.4e+02 Score=19.28 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.2
Q ss_pred cceeccCCCCCCCchHHHHHHHHHHHH
Q psy181 6 KKIHMFREAERRPPVFVSNLFTALVLL 32 (111)
Q Consensus 6 EI~H~Fr~~ek~pp~~is~~F~~~v~~ 32 (111)
|+-+..+++++.||..+.-+++++++.
T Consensus 30 ~~l~s~n~d~~~p~AS~~Kl~~~~~~l 56 (263)
T d1m40a_ 30 KILESFRPEERFPMMSTFKVLLCGAVL 56 (263)
T ss_dssp CEEEEESTTSCEECGGGHHHHHHHHHH
T ss_pred cEeeEECCCCcccchHHHHHHHHHHHH
Confidence 566778999999999999998876554
No 10
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=1.4e+02 Score=16.35 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=12.9
Q ss_pred HHHHhhhHHHHHHHhhc
Q psy181 93 ITFYTGNSLLSHIASSK 109 (111)
Q Consensus 93 ~t~~~G~~~L~~~~~~R 109 (111)
+..+..+++|.+++++|
T Consensus 25 ~~~I~~d~~L~~ia~~~ 41 (77)
T d1wuda1 25 PYVVFNDATLIEMAEQM 41 (77)
T ss_dssp HHHHCCHHHHHHHHHHC
T ss_pred cceeeCHHHHHHHHHHC
Confidence 44567888888888876
Done!