RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy181
(111 letters)
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 158 bits (401), Expect = 7e-47
Identities = 66/104 (63%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 5 KKKI-HMFREAERRPPVFVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLC 63
K +I H+FRE E+RPP VSN FTAL+LLP+L+L ILW KLG+NISNFPF SAI FHL
Sbjct: 531 KPEISHLFREPEKRPPTVVSNTFTALILLPLLLLLILWMKLGVNISNFPFSPSAILFHLG 590
Query: 64 LGGIFVLFGFFWLQLNMFETLKYLFFLSIITFYTGNSLLSHIAS 107
LG I L+ FWL+LNMF TLKYL L + TF GN +LS IA
Sbjct: 591 LGAILGLYYVFWLKLNMFTTLKYLAILGVFTFLAGNRMLSQIAV 634
>gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter
ZntB-like subfamily. A bacterial subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This subfamily includes the Zn2+ transporter
Salmonella typhimurium ZntB which mediates the efflux of
Zn2+ (and Cd2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, which occur
in proteins belonging to this subfamily, may be
associated with the transport of different divalent
cations, such as zinc and cadmium. The functional
diversity of MIT transporters may also be due to minor
structural differences regulating gating, substrate
selection, and transport.
Length = 290
Score = 28.6 bits (64), Expect = 0.53
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 23 SNLFT--ALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFGFFWLQL 78
S L T A V LP+ + G LG+N+ P S + F G ++ WL L
Sbjct: 230 SLLLTVVATVFLPLTFIT---GLLGMNVGGIPDVESPMGFWWVTGLSILVALLAWLLL 284
>gnl|CDD|220409 pfam09797, NatB_MDM20, N-acetyltransferase B complex (NatB) non
catalytic subunit. This is the non-catalytic subunit of
the N-terminal acetyltransferase B complex (NatB). The
NatB complex catalyzes the acetylation of the
amino-terminal methionine residue of all proteins
beginning with Met-Asp or Met-Glu and of some proteins
beginning with Met-Asn or Met-Met. In Saccharomyces
cerevisiae this subunit is called MDM20 and in
Schizosaccharomyces pombe it is called Arm1. NatB
acetylates the Tpm1 protein and regulates and
tropomyocin-actin interactions. This subunit is required
by the NatB complex for the N-terminal acetylation of
Tpm1.
Length = 364
Score = 28.5 bits (64), Expect = 0.74
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 9 HMFREAERRPPVFVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIF 68
+ + L A+ LL L + N+ +L I +L LG
Sbjct: 180 SLLDLYLSTKDL--EYLLEAIALLENG--------LKKSPHNYDLKLLLIRLYLLLG-AA 228
Query: 69 VLFGFFWLQLNM----FETLKYLFFLSIITFYTGNSLLSH 104
L + +L++ +TL +L F + T S S
Sbjct: 229 SLALEHYEKLDIKNIQHDTLGHLLFTRLSTGGPNKSASSA 268
>gnl|CDD|224500 COG1584, COG1584, Predicted membrane protein [Function unknown].
Length = 207
Score = 28.1 bits (63), Expect = 0.91
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 35 LILFILWGKLGINISNFPFRLS-AIAFHLCLGGIFVLFGFF------WLQLNMFETLKYL 87
L L +L KLGI P L+ A+ ++L L GIF L F +F +L L
Sbjct: 94 LALILLMPKLGILGYLDPAPLANALGWYLILWGIFTLLMFIGTLKSTRALQFVFLSLTVL 153
Query: 88 FFLSIITFYTGNSLLSHIA 106
F L I +TGN L+H
Sbjct: 154 FLLLAIGNFTGNVGLTHAG 172
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 26.5 bits (59), Expect = 3.7
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 19 PVFVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFG----FF 74
+ + FT LVL+ +L+ + G + + L L I +L
Sbjct: 817 ALLQTTAFTVLVLIQLLLTLAVR-SRGRPFLSSLLFSNKY-LWLALLVIIILQLLIIFLP 874
Query: 75 WLQLNMFETLKYLFFLSIITF 95
L L +F+ F +I
Sbjct: 875 PLNLKIFQPTPLSLFEWLIAI 895
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 26.0 bits (58), Expect = 4.2
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 21 FVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFGF---FWLQ 77
L LLP L++ ++ G L NI F S A + + G F LQ
Sbjct: 83 KALLLEILKALLPFLLVLLVVG-LLANILQVGFLFSTEALKPKFSKLNPIKGLKRIFSLQ 141
Query: 78 LNMFETLK---YLFFLSIITFYT 97
+ E LK + + ++ ++
Sbjct: 142 -TLVELLKSLLKIVLVGLVAYFV 163
>gnl|CDD|226220 COG3696, COG3696, Putative silver efflux pump [Inorganic ion
transport and metabolism].
Length = 1027
Score = 26.1 bits (58), Expect = 4.3
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 22 VSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFG 72
++ AL++ L ++ G + + + F ++A + L G+ VL G
Sbjct: 882 FKSVGEALLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNG 932
>gnl|CDD|217678 pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This
family contains uncharacterized integral membrane
proteins.
Length = 771
Score = 26.0 bits (58), Expect = 5.2
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 25 LFTALVLLPILILFILWGKLGINISNFPFRLSAIAF-HL-CLGGIFVLF--GFFWLQLNM 80
L L+L I L + GI + LS A HL L G+F L +WL
Sbjct: 163 LLALLLLALIATLLTYYLYGGIRLQGRFPGLSRAARRHLAVLLGLFFLLKAAGYWLD--R 220
Query: 81 FETL 84
+E L
Sbjct: 221 YELL 224
>gnl|CDD|201774 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of
this family are dipeptidyl carboxydipeptidases (cleave
carboxyl dipeptides) and most notably convert
angiotensin I to angiotensin II. Many members of this
family contain a tandem duplication of the 600 amino
acid peptidase domain, both of these are catalytically
active. Most members are secreted membrane bound
ectoenzymes.
Length = 595
Score = 26.0 bits (57), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 8/26 (30%)
Query: 9 HMFREAERRPPVFVSNLFTALVLLPI 34
MFREA+ FT+L LLP+
Sbjct: 286 RMFREAD--------EFFTSLGLLPV 303
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 25.5 bits (56), Expect = 6.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 14 AERRPPVFVSNLFTAL 29
AER+PP+F N +AL
Sbjct: 208 AERKPPLFNMNAMSAL 223
>gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump, CzcA family. This
model represents a family of H+/heavy metal cation
antiporters. This family is one of several subfamilies
within the scope of Pfam model pfam00873 [Cellular
processes, Detoxification, Transport and binding
proteins, Cations and iron carrying compounds].
Length = 1051
Score = 25.5 bits (56), Expect = 6.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 15 ERRPPVFVSNLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVL 70
E R P+ L LV LPI L + GK+ F A L L G +L
Sbjct: 447 EVRRPLIFGQLIITLVFLPIFTLTGVEGKM--------FHPMAFTVVLALAGAMIL 494
>gnl|CDD|226914 COG4539, COG4539, Predicted membrane protein [Function unknown].
Length = 180
Score = 25.2 bits (55), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 15 ERRPPVFVSNLFTALVLLPILILFILWGKLG 45
E+R P V NL +LV+ P+ IL KLG
Sbjct: 123 EKRKPALVDNLVQSLVIAPLFILAETLFKLG 153
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 25.3 bits (56), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 24 NLFTALVLLPILILFILWGKLGINISNFPFRLSAIAFHLCLGGIFVLFGF 73
N AL+ + L + ILW +L I + P L A+ + G+ L G
Sbjct: 182 NWGDALIGIVTLGVLILWPRLKIRL---PGHLPALLAGTAVMGVLNLLGG 228
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 25.2 bits (56), Expect = 8.0
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 18 PPVFVSNLFTALVLLPILILFILWGKLGINISNFP---FRLSAIAFHLCLGGIFVLFGFF 74
P +F S +L+ P I L + + + + + L + + F +F
Sbjct: 202 PIIFAS----SLLANPQTIAQFLGSSFPLWPVSGLAYYLPIGSPVYILFYIVLIIFFSYF 257
Query: 75 WLQLNM 80
+ +
Sbjct: 258 YTAIGF 263
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 25.3 bits (56), Expect = 9.9
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 8 IHMFREAERRPPVF------VSNLFTALVLLPILILFILWGKLGINIS 49
+ + EA+ +++ + VL L+ F++W LG +
Sbjct: 149 VELVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGALGA 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.336 0.149 0.467
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,840,500
Number of extensions: 533770
Number of successful extensions: 2031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 383
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.2 bits)