RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy181
         (111 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.013
 Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 12  REAERRPPVFVSNLFTALVLLPILIL-----FILWGK-LGINISNFPFRLSAIAFHLCLG 65
                 P      L +  +  P++ +     +++  K LG         L          
Sbjct: 220 ENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT--GHSQ 275

Query: 66  GI----FVLFGFFW--LQLNMFETLKYLFFL 90
           G+     +     W    +++ + +  LFF+
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFI 306


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.80
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 8/48 (16%)

Query: 3   KAKKKIHMFREAERRPPVFVSNLFTAL------VLLPILILFILWGKL 44
           K    I          P     +F  L        +P ++L ++W  +
Sbjct: 354 KLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399


>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
          antibiotic resistance, cell shape, peptidoglycan; 2.18A
          {Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
          Length = 680

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 10/42 (23%)

Query: 49 SNFPFRLSAIAFHLCLGGIFVLFG-----FFWLQLNMFETLK 85
           + P RL     +L    + +LF        ++Q+   +  +
Sbjct: 7  HSIPIRL-----NLLFSIVILLFMTIIGRLLYMQVLNKDFYE 43


>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
           hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
           familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
          Length = 377

 Score = 25.3 bits (55), Expect = 5.2
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 18  PPVFVSN---LFTALVLLPILILFILWGKLGINISNFPFRLSAIAF-------HLCLGGI 67
           P   V     L   L+L+P  +  +++G       +F  +  A           LC   +
Sbjct: 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240

Query: 68  FVLFGFFWLQLNMFETLKYLFFL 90
           F++ GF  + LNM     YL   
Sbjct: 241 FIICGFDTMNLNMSRLDVYLSHN 263


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.336    0.149    0.467 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,655,157
Number of extensions: 85254
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 34
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.6 bits)