BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18100
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 34 ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
NMVGPG+VD +LE EV EC KYG V RV+I E+
Sbjct: 288 RNMVGPGQVDDELEDEVGGECG-KYGTVTRVLIFEI 322
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 34 ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 314 RNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 311 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 339
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 34 ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 310 RNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 307 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 335
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
NMVGP ++D DLE EV +EC KYG V RVII++
Sbjct: 425 NMVGPEDIDDDLEGEVMEECG-KYGAVNRVIIYQ 457
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMVGP ++D DLE EV EEC KYG
Sbjct: 425 NMVGPEDIDDDLEGEVMEECG-KYG 448
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 457 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 499
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMV P ++D DLE EV EEC K+G
Sbjct: 467 NMVDPKDIDDDLEGEVTEECG-KFG 490
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 429 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 471
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMV P ++D DLE EV EEC K+G
Sbjct: 439 NMVDPKDIDDDLEGEVTEECG-KFG 462
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 458 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 500
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMV P ++D DLE EV EEC K+G
Sbjct: 468 NMVDPKDIDDDLEGEVTEECG-KFG 491
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 463 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 505
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMV P ++D DLE EV EEC K+G
Sbjct: 473 NMVDPKDIDDDLEGEVTEECG-KFG 496
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 463 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 505
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMV P ++D DLE EV EEC K+G
Sbjct: 473 NMVDPKDIDDDLEGEVTEECG-KFG 496
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN 74
NMVGP +VD L+ E+++EC +K+G V RVII T N
Sbjct: 543 NMVGPEDVDETLQEEIQEEC-SKFGTVSRVIIFNEKQTEN 581
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 9 NMVGPGEVDSDLEPEVKEECNTKYG 33
NMVGP +VD L+ E++EEC +K+G
Sbjct: 543 NMVGPEDVDETLQEEIQEEC-SKFG 566
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 18 SDLEPEVKEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVII 66
S+ EP ++ C ENM P E S +LE +VK+EC+ KYG+VV + +
Sbjct: 497 SEPEPPIRSRCALL--ENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAV 548
>sp|O04160|KSGT_BRANA Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2
Length = 468
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 19 DLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVII 66
D PEV + + E GE D D+EP + + C T+ G+V+ +
Sbjct: 74 DQLPEVMNDMRLREDEPHANRGEEDKDMEPPIVNGCGTETGQVITTTV 121
>sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2
Length = 749
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDE 53
DLN V PG +D D EV+ E + E+D EP+ K E
Sbjct: 659 DLNAVSPGNLDKDEGSEVESEMDE----------ELDDSSEPQAKRE 695
>sp|Q4R3I8|RFX3_MACFA Transcription factor RFX3 OS=Macaca fascicularis GN=RFX3 PE=2 SV=1
Length = 749
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDE 53
DLN V PG +D D EV+ E + E+D EP+ K E
Sbjct: 659 DLNAVSPGNLDKDEGSEVESEMDE----------ELDDSSEPQAKRE 695
>sp|Q3UTY6|THSD4_MOUSE Thrombospondin type-1 domain-containing protein 4 OS=Mus musculus
GN=Thsd4 PE=1 SV=2
Length = 1018
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 17 DSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKY 58
D L+PE +E CNT+ D PEV + C KY
Sbjct: 951 DPQLKPEERESCNTQ-------------DCVPEVDENCKDKY 979
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,680,831
Number of Sequences: 539616
Number of extensions: 1324355
Number of successful extensions: 2261
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2221
Number of HSP's gapped (non-prelim): 49
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)