Query psy18100
Match_columns 76
No_of_seqs 111 out of 384
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1996|consensus 99.5 2.3E-15 5E-20 116.1 1.4 58 16-74 269-326 (378)
2 KOG0124|consensus 99.4 1.6E-13 3.6E-18 108.8 4.7 49 25-74 443-491 (544)
3 TIGR01645 half-pint poly-U bin 99.3 8.1E-13 1.8E-17 107.8 4.3 46 26-72 512-557 (612)
4 KOG0147|consensus 99.0 3.2E-10 6.9E-15 91.9 2.8 50 20-70 435-489 (549)
5 KOG0120|consensus 98.8 1.6E-09 3.5E-14 87.2 2.6 49 24-73 395-449 (500)
6 KOG1548|consensus 98.7 1.5E-08 3.2E-13 79.4 4.2 52 21-73 258-315 (382)
7 TIGR01622 SF-CC1 splicing fact 98.5 1.4E-07 3E-12 71.5 5.5 46 24-70 358-408 (457)
8 TIGR01642 U2AF_lg U2 snRNP aux 98.5 7.7E-08 1.7E-12 73.6 4.0 44 25-69 406-454 (509)
9 smart00361 RRM_1 RNA recogniti 97.2 0.00051 1.1E-08 40.7 3.3 22 43-65 2-23 (70)
10 PF15519 RBM39linker: linker b 96.7 0.0009 2E-08 41.7 1.8 18 26-43 52-69 (73)
11 KOG0124|consensus 96.1 0.0024 5.1E-08 51.6 1.1 44 3-46 447-496 (544)
12 KOG1996|consensus 96.0 0.0016 3.5E-08 51.1 -0.2 25 3-27 282-306 (378)
13 PF13893 RRM_5: RNA recognitio 92.8 0.16 3.4E-06 28.3 3.0 20 50-70 1-20 (56)
14 PLN03134 glycine-rich RNA-bind 88.3 2.9 6.3E-05 28.2 6.4 42 24-71 30-71 (144)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 86.5 1.2 2.5E-05 35.1 4.2 37 27-69 1-37 (481)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 85.4 2.5 5.5E-05 30.8 5.2 38 27-70 268-305 (352)
17 smart00360 RRM RNA recognition 81.4 2.8 6.2E-05 22.0 3.2 24 47-71 10-33 (71)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 80.0 5 0.00011 29.3 5.0 37 28-70 3-39 (352)
19 smart00362 RRM_2 RNA recogniti 75.6 5.6 0.00012 21.0 3.3 23 47-70 13-35 (72)
20 TIGR01622 SF-CC1 splicing fact 74.5 9.1 0.0002 29.1 5.2 39 26-70 87-125 (457)
21 PF14259 RRM_6: RNA recognitio 74.0 5.8 0.00013 22.2 3.2 22 48-70 13-34 (70)
22 TIGR01645 half-pint poly-U bin 71.1 0.65 1.4E-05 38.8 -1.8 24 3-26 515-538 (612)
23 KOG2202|consensus 70.7 0.91 2E-05 34.7 -0.9 44 25-68 40-103 (260)
24 PF00076 RRM_1: RNA recognitio 69.6 8.7 0.00019 20.9 3.2 22 47-69 12-33 (70)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 69.4 6 0.00013 31.2 3.3 35 31-71 99-133 (481)
26 TIGR01648 hnRNP-R-Q heterogene 68.9 11 0.00023 31.5 4.8 37 26-68 231-269 (578)
27 cd00590 RRM RRM (RNA recogniti 67.9 12 0.00025 19.8 3.4 24 47-71 13-36 (74)
28 KOG0114|consensus 67.1 22 0.00048 24.5 5.3 52 12-72 5-56 (124)
29 PF01545 Cation_efflux: Cation 65.4 5 0.00011 28.5 2.0 30 44-73 254-283 (284)
30 TIGR01659 sex-lethal sex-letha 64.0 10 0.00023 29.2 3.6 36 29-70 194-229 (346)
31 PF13043 DUF3903: Domain of un 59.1 6.1 0.00013 22.3 1.2 15 47-61 10-24 (40)
32 KOG0144|consensus 59.0 5.3 0.00011 33.0 1.3 25 46-71 137-161 (510)
33 PLN03121 nucleic acid binding 58.7 12 0.00026 28.3 3.1 38 29-72 6-43 (243)
34 PLN03120 nucleic acid binding 58.7 13 0.00028 28.3 3.2 37 28-70 4-40 (260)
35 TIGR01628 PABP-1234 polyadenyl 57.9 14 0.00029 29.3 3.4 37 28-70 285-321 (562)
36 KOG0117|consensus 52.2 19 0.00041 29.9 3.4 35 28-69 259-294 (506)
37 TIGR01628 PABP-1234 polyadenyl 51.1 20 0.00044 28.4 3.4 24 47-71 14-37 (562)
38 KOG0113|consensus 50.9 14 0.00031 29.2 2.5 23 46-69 114-136 (335)
39 KOG4207|consensus 47.2 15 0.00033 28.0 2.0 24 48-72 28-51 (256)
40 TIGR01642 U2AF_lg U2 snRNP aux 45.1 63 0.0014 24.9 5.2 38 27-70 294-331 (509)
41 TIGR01659 sex-lethal sex-letha 41.3 37 0.0008 26.2 3.4 24 47-71 121-144 (346)
42 PRK03557 zinc transporter ZitB 39.7 52 0.0011 24.6 3.9 39 33-72 255-293 (312)
43 COG0724 RNA-binding proteins ( 38.9 41 0.0009 21.7 2.9 37 28-70 115-151 (306)
44 PF14234 DUF4336: Domain of un 36.0 56 0.0012 25.1 3.6 44 25-69 19-66 (285)
45 smart00545 JmjN Small domain f 34.9 20 0.00044 20.1 0.8 22 40-62 10-33 (42)
46 PF08777 RRM_3: RNA binding mo 32.7 51 0.0011 21.2 2.6 21 47-68 15-35 (105)
47 KOG0107|consensus 30.0 59 0.0013 24.0 2.8 24 46-70 23-46 (195)
48 PLN03213 repressor of silencin 29.5 66 0.0014 27.6 3.3 24 47-71 24-47 (759)
49 COG1669 Predicted nucleotidylt 28.5 57 0.0012 21.4 2.3 24 45-69 9-32 (97)
50 smart00540 LEM in nuclear memb 28.3 38 0.00082 19.2 1.2 12 48-60 9-20 (44)
51 PF10087 DUF2325: Uncharacteri 27.6 68 0.0015 19.7 2.4 35 20-60 42-76 (97)
52 KOG0127|consensus 26.9 1.1E+02 0.0024 26.4 4.1 36 29-70 293-328 (678)
53 PF02375 JmjN: jmjN domain; I 25.7 22 0.00047 19.1 -0.1 16 46-62 16-31 (34)
54 PRK00668 ndk mulitfunctional n 24.8 36 0.00078 22.6 0.8 43 7-49 84-126 (134)
55 KOG0127|consensus 24.5 74 0.0016 27.4 2.7 36 30-71 119-154 (678)
56 KOG0144|consensus 24.0 88 0.0019 26.1 3.0 27 46-73 47-73 (510)
57 KOG0125|consensus 23.1 58 0.0012 26.2 1.8 34 29-68 97-130 (376)
58 PF02037 SAP: SAP domain; Int 22.5 58 0.0013 17.0 1.2 12 47-59 6-17 (35)
59 PTZ00059 dynein light chain; P 22.4 89 0.0019 19.5 2.3 26 43-68 36-61 (90)
60 TIGR01648 hnRNP-R-Q heterogene 22.4 1E+02 0.0023 25.8 3.2 23 46-69 71-93 (578)
61 PF14605 Nup35_RRM_2: Nup53/35 21.9 1.5E+02 0.0033 16.6 3.0 26 42-68 9-34 (53)
62 KOG0148|consensus 21.8 70 0.0015 25.2 2.0 36 37-73 65-101 (321)
63 PF05184 SapB_1: Saposin-like 21.1 27 0.00058 17.9 -0.3 25 34-59 15-39 (39)
64 PTZ00093 nucleoside diphosphat 21.0 54 0.0012 22.4 1.1 44 7-50 85-128 (149)
No 1
>KOG1996|consensus
Probab=99.52 E-value=2.3e-15 Score=116.11 Aligned_cols=58 Identities=45% Similarity=0.662 Sum_probs=54.4
Q ss_pred CCCCCccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCCCC
Q psy18100 16 VDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN 74 (76)
Q Consensus 16 vd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~~~ 74 (76)
++++|+...+.|++||+|+|||+++++|+||++|+++|| +|||+|.+|.||..|++++
T Consensus 269 ~v~n~t~Il~~ptkvlllrnmVg~gevd~elede~keEc-eKyg~V~~viifeip~~p~ 326 (378)
T KOG1996|consen 269 SVSNLTEILKCPTKVLLLRNMVGAGEVDEELEDETKEEC-EKYGKVGNVIIFEIPSQPE 326 (378)
T ss_pred hhhhHHHHHhcchHHHHhhhhcCcccccHHHHHHHHHHH-HhhcceeeEEEEecCCCcc
Confidence 567788889999999999999999999999999999999 5999999999999999875
No 2
>KOG0124|consensus
Probab=99.42 E-value=1.6e-13 Score=108.78 Aligned_cols=49 Identities=41% Similarity=0.638 Sum_probs=45.1
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN 74 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~~~ 74 (76)
+..|+|++|+|||+|.|+|++|++||+|||+ |||.|.||.|+...+.++
T Consensus 443 ~~~S~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~ 491 (544)
T KOG0124|consen 443 KQESTVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEE 491 (544)
T ss_pred cccCcEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccc
Confidence 4679999999999999999999999999995 999999999999877653
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.34 E-value=8.1e-13 Score=107.80 Aligned_cols=46 Identities=39% Similarity=0.549 Sum_probs=42.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
.+||||+|+|||+++|+++||++||++|| +|||.|.+|.||+.+..
T Consensus 512 ~~S~vVvL~NMv~~~eldedl~eDV~eEC-~K~G~V~~v~I~~~~~~ 557 (612)
T TIGR01645 512 NRSNVIVLRNMVTPQDIDEFLEGEIREEC-GKFGVVDRVIINFEKQG 557 (612)
T ss_pred CCCCEEEEeCCCChHHhHHHHHHHHHHHh-hcCceeEEEEEecCCCC
Confidence 47999999999999999999999999999 69999999999996543
No 4
>KOG0147|consensus
Probab=98.96 E-value=3.2e-10 Score=91.94 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=43.0
Q ss_pred CccccccccceeeeeccCCCCc-----cccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 20 LEPEVKEECNTKYGENMVGPGE-----VDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 20 l~~ev~~~s~vl~L~NMv~~~e-----~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..|.+..||.|++|+|||+|.+ ||.||++||.||| +|||+|.||.+-.-.
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec-~k~g~v~hi~vd~ns 489 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEEC-GKHGKVCHIFVDKNS 489 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHH-HhcCCeeEEEEccCC
Confidence 3566779999999999999976 5679999999999 599999999886543
No 5
>KOG0120|consensus
Probab=98.83 E-value=1.6e-09 Score=87.24 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=43.0
Q ss_pred cccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecC-CCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHEL-PTTA 73 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~-~~~~ 73 (76)
.+.||+|++|+|||+|+|+.+ ||.++||.|| +|||.|..|.||++ ....
T Consensus 395 ~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr~~~~~~ 449 (500)
T KOG0120|consen 395 AGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPRPYPDEN 449 (500)
T ss_pred CCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCCCCCCCC
Confidence 468999999999999999864 5889999999 69999999999998 4443
No 6
>KOG1548|consensus
Probab=98.70 E-value=1.5e-08 Score=79.35 Aligned_cols=52 Identities=25% Similarity=0.527 Sum_probs=42.9
Q ss_pred ccccccccceeeeeccCCCCcccc------chHHHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100 21 EPEVKEECNTKYGENMVGPGEVDS------DLEPEVKDECNTKYGEVVRVIIHELPTTA 73 (76)
Q Consensus 21 ~~ev~~~s~vl~L~NMv~~~e~dd------dl~~eV~eEC~~KyG~V~~v~I~~~~~~~ 73 (76)
.++.....++|+|+|||+|.++++ ||++|+++|| +|||.|.+|+|+.-+...
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec-~K~G~v~~vvv~d~hPdG 315 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEEC-EKFGQVRKVVVYDRHPDG 315 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHH-HHhCCcceEEEeccCCCc
Confidence 344445678999999999998865 5899999999 699999999999765544
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.55 E-value=1.4e-07 Score=71.48 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=38.8
Q ss_pred cccccceeeeeccCCCCcc-----ccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 24 VKEECNTKYGENMVGPGEV-----DSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~-----dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
...+++||+|.||+++.+. ..+|.+||++|| +|||.|.+|.|....
T Consensus 358 ~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~-~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 358 NNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEEC-SKYGGVVHIYVDTKN 408 (457)
T ss_pred CCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHH-HhcCCeeEEEEeCCC
Confidence 3468899999999999764 347899999999 699999999998544
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.54 E-value=7.7e-08 Score=73.63 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=38.7
Q ss_pred ccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
+.+|+||+|.||++++++.+ ++.+||++|| +|||.|.+|.|++.
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIVIPRP 454 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEEeecc
Confidence 46899999999999988743 5889999999 69999999999975
No 9
>smart00361 RRM_1 RNA recognition motif.
Probab=97.18 E-value=0.00051 Score=40.73 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHhhcCcceEEEE
Q psy18100 43 DSDLEPEVKDECNTKYGEVVRVI 65 (76)
Q Consensus 43 dddl~~eV~eEC~~KyG~V~~v~ 65 (76)
++||++.+++|| ++||.|.++.
T Consensus 2 ~~~l~~~~~~~~-~~fG~v~~v~ 23 (70)
T smart00361 2 DEDFEREFSEEE-EYFGEVGKIN 23 (70)
T ss_pred chhHHHHHHHHH-HhcCCeeEEE
Confidence 468999999999 6999999995
No 10
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=96.74 E-value=0.0009 Score=41.68 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=12.3
Q ss_pred cccceeeeeccCCCCccc
Q psy18100 26 EECNTKYGENMVGPGEVD 43 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~d 43 (76)
.+|+|++|+|||+|.+-.
T Consensus 52 ~aS~C~lLkNMFDP~~Et 69 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAEET 69 (73)
T ss_dssp ---SEEEEESSS-TTCGG
T ss_pred CCCceeeeecCCCccccc
Confidence 789999999999998643
No 11
>KOG0124|consensus
Probab=96.09 E-value=0.0024 Score=51.63 Aligned_cols=44 Identities=36% Similarity=0.497 Sum_probs=31.2
Q ss_pred eeeeeccccCCCCCCCCCccccccccc------eeeeeccCCCCccccch
Q psy18100 3 ATILDLNMVGPGEVDSDLEPEVKEECN------TKYGENMVGPGEVDSDL 46 (76)
Q Consensus 3 ~~~~~~NMv~p~evd~~l~~ev~~~s~------vl~L~NMv~~~e~dddl 46 (76)
++|+|+|||+|.++|++|.+++...|- -+++.|--.-++-|.+|
T Consensus 447 ~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaei 496 (544)
T KOG0124|consen 447 TVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEI 496 (544)
T ss_pred cEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhh
Confidence 689999999999999999988754432 24455655555555443
No 12
>KOG1996|consensus
Probab=96.00 E-value=0.0016 Score=51.07 Aligned_cols=25 Identities=60% Similarity=0.809 Sum_probs=21.7
Q ss_pred eeeeeccccCCCCCCCCCccccccc
Q psy18100 3 ATILDLNMVGPGEVDSDLEPEVKEE 27 (76)
Q Consensus 3 ~~~~~~NMv~p~evd~~l~~ev~~~ 27 (76)
++++|+||||++++|++|.++++..
T Consensus 282 kvlllrnmVg~gevd~elede~keE 306 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEE 306 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHH
Confidence 5789999999999999998887643
No 13
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=92.84 E-value=0.16 Score=28.28 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.0
Q ss_pred HHHHHhhcCcceEEEEEecCC
Q psy18100 50 VKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 50 V~eEC~~KyG~V~~v~I~~~~ 70 (76)
+++.| ++||.|.++.+.+..
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~ 20 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK 20 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS
T ss_pred ChHHh-CCcccEEEEEEEeCC
Confidence 46789 799999999998765
No 14
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=88.28 E-value=2.9 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=31.6
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+..++-|.+.|+-..- -++|+++-+ ++||.|.++.|+....
T Consensus 30 ~~~~~~~lfVgnL~~~~-----te~~L~~~F-~~~G~I~~v~i~~d~~ 71 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGT-----DDASLRDAF-AHFGDVVDAKVIVDRE 71 (144)
T ss_pred ccCCCCEEEEeCCCCCC-----CHHHHHHHH-hcCCCeEEEEEEecCC
Confidence 34556678888875432 368999999 6999999999987643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=86.51 E-value=1.2 Score=35.12 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.4
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
|||+|.+.|+=. ++ -++|+++-+ ++||.|.++.|...
T Consensus 1 ps~vv~V~nLp~--~~---te~~L~~~f-~~fG~V~~v~i~~~ 37 (481)
T TIGR01649 1 PSPVVHVRNLPQ--DV---VEADLVEAL-IPFGPVSYVMMLPG 37 (481)
T ss_pred CccEEEEcCCCC--CC---CHHHHHHHH-HhcCCeeEEEEECC
Confidence 689999999743 22 357789999 79999999998753
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=85.36 E-value=2.5 Score=30.81 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=29.3
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
++++|.+.|+- .++ -++++++-+ ++||.|.++.|+..+
T Consensus 268 ~~~~lfV~NL~--~~~---~e~~L~~~F-~~fG~v~~v~i~~d~ 305 (352)
T TIGR01661 268 AGYCIFVYNLS--PDT---DETVLWQLF-GPFGAVQNVKIIRDL 305 (352)
T ss_pred CCcEEEEeCCC--CCC---CHHHHHHHH-HhCCCeEEEEEeEcC
Confidence 34579999984 333 356788899 699999999998765
No 17
>smart00360 RRM RNA recognition motif.
Probab=81.35 E-value=2.8 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+|+++-+ ++||.|.++.|+..+.
T Consensus 10 ~~~l~~~f-~~~g~v~~~~i~~~~~ 33 (71)
T smart00360 10 EEELRELF-SKFGKIESVRLVRDKD 33 (71)
T ss_pred HHHHHHHH-HhhCCEeEEEEEeCCC
Confidence 47888999 6999999999987654
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=79.98 E-value=5 Score=29.27 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=27.9
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+.-|.+.|+ |.++. ++|+++-+ ++||+|.+|.|....
T Consensus 3 ~~~l~V~nL--p~~~~---e~~l~~~F-~~~G~i~~v~i~~d~ 39 (352)
T TIGR01661 3 KTNLIVNYL--PQTMT---QEEIRSLF-TSIGEIESCKLVRDK 39 (352)
T ss_pred CcEEEEeCC--CCCCC---HHHHHHHH-HccCCEEEEEEEEcC
Confidence 455677777 44444 37888999 699999999998754
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=75.59 E-value=5.6 Score=20.95 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCcceEEEEEecCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+|+++-. ++||.|.++.+...+
T Consensus 13 ~~~l~~~~-~~~g~v~~~~~~~~~ 35 (72)
T smart00362 13 EEDLKELF-SKFGPIESVKIPKDT 35 (72)
T ss_pred HHHHHHHH-HhcCCEEEEEEecCC
Confidence 47888888 599999999988765
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=74.53 E-value=9.1 Score=29.14 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=30.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- ..+. +++|++.+ ++||.|..|.|....
T Consensus 87 ~~~~~l~V~nlp--~~~~---~~~l~~~F-~~~G~v~~v~i~~d~ 125 (457)
T TIGR01622 87 RDDRTVFVLQLA--LKAR---ERDLYEFF-SKVGKVRDVQCIKDR 125 (457)
T ss_pred cCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEeecC
Confidence 456789999983 3333 57789999 699999999998653
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=73.98 E-value=5.8 Score=22.23 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCcceEEEEEecCC
Q psy18100 48 PEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 48 ~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+|+++.+ ++||.|.++.+....
T Consensus 13 ~~l~~~f-~~~g~v~~v~~~~~~ 34 (70)
T PF14259_consen 13 EDLRNFF-SRFGPVEKVRLIKNK 34 (70)
T ss_dssp HHHHHHC-TTSSBEEEEEEEEST
T ss_pred HHHHHHH-HhcCCcceEEEEeee
Confidence 7899999 699999999998754
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=71.11 E-value=0.65 Score=38.81 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=20.3
Q ss_pred eeeeeccccCCCCCCCCCcccccc
Q psy18100 3 ATILDLNMVGPGEVDSDLEPEVKE 26 (76)
Q Consensus 3 ~~~~~~NMv~p~evd~~l~~ev~~ 26 (76)
++|+|+||+.|.+.+++|.+++..
T Consensus 515 ~vVvL~NMv~~~eldedl~eDV~e 538 (612)
T TIGR01645 515 NVIVLRNMVTPQDIDEFLEGEIRE 538 (612)
T ss_pred CEEEEeCCCChHHhHHHHHHHHHH
Confidence 689999999999999888776643
No 23
>KOG2202|consensus
Probab=70.68 E-value=0.91 Score=34.67 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=30.3
Q ss_pred ccccceeeeeccCCCCcc--------------------ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEV--------------------DSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~--------------------dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
++-|.+++|+||-.--+. .++.-+|+-.|++.|||.|+.+.|-.
T Consensus 40 pt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~ 103 (260)
T KOG2202|consen 40 PTFSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCD 103 (260)
T ss_pred cccchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 345667888887542211 13456999999955999999986654
No 24
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=69.60 E-value=8.7 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcCcceEEEEEecC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++|+++-. ++||.|..+.+...
T Consensus 12 ~~~l~~~f-~~~g~i~~~~~~~~ 33 (70)
T PF00076_consen 12 EEELRDFF-SQFGKIESIKVMRN 33 (70)
T ss_dssp HHHHHHHH-HTTSTEEEEEEEEE
T ss_pred HHHHHHHH-HHhhhccccccccc
Confidence 47889999 69999999999874
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=69.42 E-value=6 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=24.6
Q ss_pred eeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 31 KYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 31 l~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
|.+.|+-.+ ++ ++++++-+ ++||.|.+|.|++..+
T Consensus 99 v~v~nl~~~--vt---~~~L~~~F-~~~G~V~~v~i~~~~~ 133 (481)
T TIGR01649 99 VIVENPMYP--IT---LDVLYQIF-NPYGKVLRIVTFTKNN 133 (481)
T ss_pred EEEcCCCCC--CC---HHHHHHHH-hccCCEEEEEEEecCC
Confidence 455565322 32 36788999 6999999999987543
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=68.91 E-value=11 Score=31.46 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcC--cceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKY--GEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~Ky--G~V~~v~I~~ 68 (76)
..+++|.+.|+- .++. ++++++.+ ++| |.|.+|.+.+
T Consensus 231 ~~~k~LfVgNL~--~~~t---ee~L~~~F-~~f~~G~I~rV~~~r 269 (578)
T TIGR01648 231 AKVKILYVRNLM--TTTT---EEIIEKSF-SEFKPGKVERVKKIR 269 (578)
T ss_pred ccccEEEEeCCC--CCCC---HHHHHHHH-HhcCCCceEEEEeec
Confidence 446889999973 2232 57789999 699 9999998764
No 27
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=67.90 E-value=12 Score=19.77 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++++-+ ++||.+.++.+...+.
T Consensus 13 ~~~i~~~~-~~~g~i~~~~~~~~~~ 36 (74)
T cd00590 13 EEDLRELF-SKFGKVESVRIVRDKD 36 (74)
T ss_pred HHHHHHHH-HhcCCEEEEEEeeCCC
Confidence 58899999 6999999999987653
No 28
>KOG0114|consensus
Probab=67.05 E-value=22 Score=24.47 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=36.5
Q ss_pred CCCCCCCCCccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 12 GPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 12 ~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
+.......|++++ +|+|.++|+-- .+ -.+|+-+=.| |||.|..|.|-..++.
T Consensus 5 ~~~~~~~rlppev---nriLyirNLp~--~I---TseemydlFG-kyg~IrQIRiG~~k~T 56 (124)
T KOG0114|consen 5 GKKKQNIRLPPEV---NRILYIRNLPF--KI---TSEEMYDLFG-KYGTIRQIRIGNTKET 56 (124)
T ss_pred ccccCCCCCChhh---heeEEEecCCc--cc---cHHHHHHHhh-cccceEEEEecCccCc
Confidence 3344556677753 79999999732 22 2467788887 9999999998765543
No 29
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=65.35 E-value=5 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=25.4
Q ss_pred cchHHHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100 44 SDLEPEVKDECNTKYGEVVRVIIHELPTTA 73 (76)
Q Consensus 44 ddl~~eV~eEC~~KyG~V~~v~I~~~~~~~ 73 (76)
+++.+++++++.++|+.|.++.|+-.|..+
T Consensus 254 ~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 254 HEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 458999999998789999999998877654
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=64.01 E-value=10 Score=29.19 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=25.7
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+-|.+.|+ |..+. ++|+++-+ ++||.|.++.|++..
T Consensus 194 ~~lfV~nL--p~~vt---ee~L~~~F-~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 194 TNLYVTNL--PRTIT---DDQLDTIF-GKYGQIVQKNILRDK 229 (346)
T ss_pred ceeEEeCC--CCccc---HHHHHHHH-HhcCCEEEEEEeecC
Confidence 34666666 22332 46889999 699999999998754
No 31
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=59.07 E-value=6.1 Score=22.35 Aligned_cols=15 Identities=27% Similarity=0.787 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcCcce
Q psy18100 47 EPEVKDECNTKYGEV 61 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V 61 (76)
.+-|+.||...||+-
T Consensus 10 i~kvr~eckrrfgkt 24 (40)
T PF13043_consen 10 IQKVRAECKRRFGKT 24 (40)
T ss_pred HHHHHHHHHHHhchh
Confidence 378999997789973
No 32
>KOG0144|consensus
Probab=59.03 E-value=5.3 Score=33.05 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 46 LEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
-+.||++=| +|||.|+.+.|-+.+.
T Consensus 137 te~evr~iF-s~fG~Ied~~ilrd~~ 161 (510)
T KOG0144|consen 137 TENEVREIF-SRFGHIEDCYILRDPD 161 (510)
T ss_pred cHHHHHHHH-HhhCccchhhheeccc
Confidence 357999999 7999999999988654
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=58.71 E-value=12 Score=28.31 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=27.3
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
..|...|+=. .--++|+++-. ++||+|.+|.|.+....
T Consensus 6 ~TV~V~NLS~-----~tTE~dLrefF-S~~G~I~~V~I~~D~et 43 (243)
T PLN03121 6 YTAEVTNLSP-----KATEKDVYDFF-SHCGAIEHVEIIRSGEY 43 (243)
T ss_pred eEEEEecCCC-----CCCHHHHHHHH-HhcCCeEEEEEecCCCc
Confidence 4556666422 22467899999 79999999999987543
No 34
>PLN03120 nucleic acid binding protein; Provisional
Probab=58.67 E-value=13 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=27.2
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
++.|.+.|+=.. --++|+++-. ++||.|.+|.|+...
T Consensus 4 ~rtVfVgNLs~~-----tTE~dLrefF-S~~G~I~~V~I~~d~ 40 (260)
T PLN03120 4 VRTVKVSNVSLK-----ATERDIKEFF-SFSGDIEYVEMQSEN 40 (260)
T ss_pred CCEEEEeCCCCC-----CCHHHHHHHH-HhcCCeEEEEEeecC
Confidence 456666665321 2357899999 699999999998765
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=57.91 E-value=14 Score=29.33 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=26.8
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+..|.+.|+-. .++ ++++++.| ++||.|.++.|....
T Consensus 285 ~~~l~V~nl~~--~~~---~~~L~~~F-~~~G~i~~~~i~~d~ 321 (562)
T TIGR01628 285 GVNLYVKNLDD--TVT---DEKLRELF-SECGEITSAKVMLDE 321 (562)
T ss_pred CCEEEEeCCCC--ccC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence 34577777632 222 47899999 699999999998763
No 36
>KOG0117|consensus
Probab=52.18 E-value=19 Score=29.95 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.2
Q ss_pred cceeeeeccCCCCccccch-HHHHHHHHhhcCcceEEEEEecC
Q psy18100 28 CNTKYGENMVGPGEVDSDL-EPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl-~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
-++|.++|+- .+. ++-++++. ++||.|+||+.++.
T Consensus 259 VKvLYVRNL~------~~tTeE~lk~~F-~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 259 VKVLYVRNLM------ESTTEETLKKLF-NEFGKVERVKKPRD 294 (506)
T ss_pred eeeeeeeccc------hhhhHHHHHHHH-HhccceEEeecccc
Confidence 4688999964 233 34568888 59999999998864
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=51.08 E-value=20 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++++++-+ ++||.|.+|.|.+...
T Consensus 14 e~~L~~~F-~~~G~v~~v~v~~d~~ 37 (562)
T TIGR01628 14 EAKLYDLF-KPFGPVLSVRVCRDSV 37 (562)
T ss_pred HHHHHHHH-HhcCCEEEEEEEecCC
Confidence 67889999 6999999999987654
No 38
>KOG0113|consensus
Probab=50.93 E-value=14 Score=29.18 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhcCcceEEEEEecC
Q psy18100 46 LEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
-+.+++.|. +|||.|++|.+...
T Consensus 114 ~EskLrreF-~~YG~IkrirlV~d 136 (335)
T KOG0113|consen 114 SESKLRREF-EKYGPIKRIRLVRD 136 (335)
T ss_pred cHHHHHHHH-HhcCcceeEEEeee
Confidence 357899999 69999999988654
No 39
>KOG4207|consensus
Probab=47.18 E-value=15 Score=27.95 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 48 PEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 48 ~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
++++-=. +|||.|-.|+||+..-.
T Consensus 28 d~LrrvF-ekYG~vgDVyIPrdr~T 51 (256)
T KOG4207|consen 28 DDLRRVF-EKYGRVGDVYIPRDRYT 51 (256)
T ss_pred HHHHHHH-HHhCcccceeccccccc
Confidence 4556667 69999999999997643
No 40
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=45.07 E-value=63 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.3
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+.+.|.+.|+ |..+. ++++++-+ ++||.|..+.|....
T Consensus 294 ~~~~l~v~nl--p~~~~---~~~l~~~f-~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 294 SKDRIYIGNL--PLYLG---EDQIKELL-ESFGDLKAFNLIKDI 331 (509)
T ss_pred CCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeeEEEEEecC
Confidence 3467888888 44443 36788999 699999999987653
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=41.28 E-value=37 Score=26.18 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|+++-+ ++||.|.+|.|.....
T Consensus 121 e~~L~~lF-~~~G~V~~v~i~~d~~ 144 (346)
T TIGR01659 121 DRELYALF-RTIGPINTCRIMRDYK 144 (346)
T ss_pred HHHHHHHH-HhcCCEEEEEEEecCC
Confidence 57889999 6999999999976543
No 42
>PRK03557 zinc transporter ZitB; Provisional
Probab=39.66 E-value=52 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=26.6
Q ss_pred eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 33 GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 33 L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
+.=.+.++.-.+++.+++++...++|| +.++.||-.|..
T Consensus 255 ~hv~v~~~~~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~ 293 (312)
T PRK03557 255 LHVQVIPPHDHDALLDRIQDYLMHHYQ-IEHATIQMEYQP 293 (312)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence 333344432235688999888756887 889999987653
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=38.95 E-value=41 Score=21.74 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.8
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+.|.+.|+= .+--++++++.. .+||.|.++.|+...
T Consensus 115 ~~~l~v~nL~-----~~~~~~~l~~~F-~~~g~~~~~~~~~d~ 151 (306)
T COG0724 115 NNTLFVGNLP-----YDVTEEDLRELF-KKFGPVKRVRLVRDR 151 (306)
T ss_pred CceEEEeCCC-----CCCCHHHHHHHH-HhcCceeEEEeeecc
Confidence 4777788875 333468899999 699999999998764
No 44
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=35.96 E-value=56 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=33.5
Q ss_pred ccccceeeeec----cCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGEN----MVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~N----Mv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
+....||.|.+ ..+|=...+++.+.|++=- .++|.|.+|+.|..
T Consensus 19 ~~RMTVVrL~~G~L~VhSPvapT~el~~~l~~L~-~~~G~VkyIVaPn~ 66 (285)
T PF14234_consen 19 PTRMTVVRLSDGGLWVHSPVAPTPELKAELDELE-AQHGPVKYIVAPNK 66 (285)
T ss_pred cceEEEEEECCCCEEEECCCCCCHHHHHHHHHHh-ccCCceeEEEcCCc
Confidence 34455888886 2456667789999998777 59999999999863
No 45
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=34.88 E-value=20 Score=20.05 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=15.1
Q ss_pred Ccccc--chHHHHHHHHhhcCcceE
Q psy18100 40 GEVDS--DLEPEVKDECNTKYGEVV 62 (76)
Q Consensus 40 ~e~dd--dl~~eV~eEC~~KyG~V~ 62 (76)
+|+.| ...+.|+... .|||.|+
T Consensus 10 eEF~Dp~~yi~~i~~~~-~~yGi~K 33 (42)
T smart00545 10 EEFKDPLAYISKIRPQA-EKYGICK 33 (42)
T ss_pred HHHHCHHHHHHHHHHHH-hhCCEEE
Confidence 34444 3457788888 7999875
No 46
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=32.70 E-value=51 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcCcceEEEEEec
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++++.| ++||.|.-|-+.+
T Consensus 15 re~iK~~f-~~~g~V~yVD~~~ 35 (105)
T PF08777_consen 15 REDIKEAF-SQFGEVAYVDFSR 35 (105)
T ss_dssp HHHHHHHT--SS--EEEEE--T
T ss_pred HHHHHHHH-HhcCCcceEEecC
Confidence 79999999 6999999887655
No 47
>KOG0107|consensus
Probab=29.99 E-value=59 Score=24.02 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=19.9
Q ss_pred hHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 46 LEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
-+.|+..+. .+||.+..|+|...|
T Consensus 23 ~k~eLE~~F-~~yG~lrsvWvArnP 46 (195)
T KOG0107|consen 23 TKRELERAF-SKYGPLRSVWVARNP 46 (195)
T ss_pred chHHHHHHH-HhcCcceeEEEeecC
Confidence 457778889 699999999998754
No 48
>PLN03213 repressor of silencing 3; Provisional
Probab=29.54 E-value=66 Score=27.65 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|++.=. +.||.|.+|.|++.+.
T Consensus 24 EDDLravF-SeFGsVkdVEIpRETG 47 (759)
T PLN03213 24 RDDLLKIF-SPMGTVDAVEFVRTKG 47 (759)
T ss_pred HHHHHHHH-HhcCCeeEEEEecccC
Confidence 46777788 6999999999997543
No 49
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=28.46 E-value=57 Score=21.45 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=17.5
Q ss_pred chHHHHHHHHhhcCcceEEEEEecC
Q psy18100 45 DLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 45 dl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++..+++.+|.+||| |.++.||-.
T Consensus 9 ~~lr~~~~~l~~k~g-v~~~~vFGS 32 (97)
T COG1669 9 KILRKIKPELKEKYG-VKRVAVFGS 32 (97)
T ss_pred HHHHHHHHHHHHHhC-CceEEEeee
Confidence 456889999944666 778888754
No 50
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=28.25 E-value=38 Score=19.20 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCcc
Q psy18100 48 PEVKDECNTKYGE 60 (76)
Q Consensus 48 ~eV~eEC~~KyG~ 60 (76)
+|++.+| .+||-
T Consensus 9 ~eL~~~L-~~~G~ 20 (44)
T smart00540 9 AELRAEL-KQYGL 20 (44)
T ss_pred HHHHHHH-HHcCC
Confidence 6889999 69985
No 51
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.64 E-value=68 Score=19.73 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=27.8
Q ss_pred CccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcc
Q psy18100 20 LEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE 60 (76)
Q Consensus 20 l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~ 60 (76)
++..++.+-=||++.+.++ -+....+++.| +|||.
T Consensus 42 l~~~i~~aD~VIv~t~~vs-----H~~~~~vk~~a-kk~~i 76 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVS-----HNAMWKVKKAA-KKYGI 76 (97)
T ss_pred HHHhcCCCCEEEEEeCCcC-----hHHHHHHHHHH-HHcCC
Confidence 6777777777888888765 45778999999 69986
No 52
>KOG0127|consensus
Probab=26.86 E-value=1.1e+02 Score=26.41 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=25.7
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
++|.++|+- -|--++++++.- +|||.|.-+.|.-.+
T Consensus 293 ~tVFvRNL~-----fD~tEEel~~~f-skFG~v~ya~iV~~k 328 (678)
T KOG0127|consen 293 KTVFVRNLP-----FDTTEEELKEHF-SKFGEVKYAIIVKDK 328 (678)
T ss_pred ceEEEecCC-----ccccHHHHHHHH-HhhccceeEEEEecc
Confidence 566666652 344678999999 799999876665443
No 53
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=25.73 E-value=22 Score=19.12 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhcCcceE
Q psy18100 46 LEPEVKDECNTKYGEVV 62 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~ 62 (76)
..+.|+.++ ++||.++
T Consensus 16 yi~~i~~~g-~~~Gi~K 31 (34)
T PF02375_consen 16 YISSIEPEG-EKYGICK 31 (34)
T ss_dssp HHHHHHHTT-GGGSEEE
T ss_pred HHHHHHHHH-HHCCEEE
Confidence 346699999 6999875
No 54
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=24.81 E-value=36 Score=22.55 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=22.8
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPE 49 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~e 49 (76)
+++++||++....-|..+....-.=.++|.|-..+..++-..|
T Consensus 84 ~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~E 126 (134)
T PRK00668 84 VRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAARE 126 (134)
T ss_pred HHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHH
Confidence 4678888877544444332221222456777766554444333
No 55
>KOG0127|consensus
Probab=24.50 E-value=74 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=25.8
Q ss_pred eeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 30 TKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 30 vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
-|+++||-=. ..+ .|++-=| ++||.|..|.||+-..
T Consensus 119 rLIIRNLPf~--~k~---~dLk~vF-s~~G~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 119 RLIIRNLPFK--CKK---PDLKNVF-SNFGKVVEIVIPRKKD 154 (678)
T ss_pred eEEeecCCcc--cCc---HHHHHHH-hhcceEEEEEcccCCC
Confidence 4677777321 111 3788999 7999999999997544
No 56
>KOG0144|consensus
Probab=23.98 E-value=88 Score=26.14 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100 46 LEPEVKDECNTKYGEVVRVIIHELPTTA 73 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~~v~I~~~~~~~ 73 (76)
-+.|+|+=. +|||.|..|-|.++....
T Consensus 47 sE~dlr~lF-e~yg~V~einl~kDk~t~ 73 (510)
T KOG0144|consen 47 SEKDLRELF-EKYGNVYEINLIKDKSTG 73 (510)
T ss_pred cHHHHHHHH-HHhCceeEEEeecccccC
Confidence 368999999 699999999999886653
No 57
>KOG0125|consensus
Probab=23.08 E-value=58 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=22.8
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
|-|-.+|+--. +. +.|.+.=. .|||+|..|.|-.
T Consensus 97 kRLhVSNIPFr--FR---dpDL~aMF-~kfG~VldVEIIf 130 (376)
T KOG0125|consen 97 KRLHVSNIPFR--FR---DPDLRAMF-EKFGKVLDVEIIF 130 (376)
T ss_pred ceeEeecCCcc--cc---CccHHHHH-HhhCceeeEEEEe
Confidence 45666665321 11 25678888 4999999999854
No 58
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.55 E-value=58 Score=17.00 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCc
Q psy18100 47 EPEVKDECNTKYG 59 (76)
Q Consensus 47 ~~eV~eEC~~KyG 59 (76)
..|.+++| .++|
T Consensus 6 v~eLk~~l-~~~g 17 (35)
T PF02037_consen 6 VAELKEEL-KERG 17 (35)
T ss_dssp HHHHHHHH-HHTT
T ss_pred HHHHHHHH-HHCC
Confidence 36889999 5887
No 59
>PTZ00059 dynein light chain; Provisional
Probab=22.41 E-value=89 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 43 DSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 43 dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
+.|+..-||.+..+|||+.=+|+|=+
T Consensus 36 ~kdiA~~IK~~fD~~yg~~WhciVG~ 61 (90)
T PTZ00059 36 EKDIAAYIKKEFDKKYNPTWHCIVGR 61 (90)
T ss_pred hHHHHHHHHHHHHhhcCCCCEEEEec
Confidence 46799999999999999998888754
No 60
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=22.40 E-value=1e+02 Score=25.78 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhcCcceEEEEEecC
Q psy18100 46 LEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 46 l~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
-++|+++-| ++||.|.++.|...
T Consensus 71 tEd~L~~~F-~~~G~I~~vrl~~D 93 (578)
T TIGR01648 71 YEDELVPLF-EKAGPIYELRLMMD 93 (578)
T ss_pred CHHHHHHHH-HhhCCEEEEEEEEC
Confidence 457889999 69999999998765
No 61
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=21.93 E-value=1.5e+02 Score=16.63 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=21.2
Q ss_pred cccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 42 VDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 42 ~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
+..+..++|..-- +.||.|.+..++.
T Consensus 9 f~~~~~~~vl~~F-~~fGeI~~~~~~~ 34 (53)
T PF14605_consen 9 FPPDLAEEVLEHF-ASFGEIVDIYVPE 34 (53)
T ss_pred ECchHHHHHHHHH-HhcCCEEEEEcCC
Confidence 4556778888899 6999999998883
No 62
>KOG0148|consensus
Probab=21.83 E-value=70 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCCCccccchH-HHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100 37 VGPGEVDSDLE-PEVKDECNTKYGEVVRVIIHELPTTA 73 (76)
Q Consensus 37 v~~~e~dddl~-~eV~eEC~~KyG~V~~v~I~~~~~~~ 73 (76)
|.-++|-.+|. +++|+-. .+||.|...+|-+..+..
T Consensus 65 vfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~ 101 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTG 101 (321)
T ss_pred EEehhcchhcchHHHHHHh-ccccccccceEeecccCC
Confidence 34466666665 7788888 799999999999887653
No 63
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=21.13 E-value=27 Score=17.91 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=17.3
Q ss_pred eccCCCCccccchHHHHHHHHhhcCc
Q psy18100 34 ENMVGPGEVDSDLEPEVKDECNTKYG 59 (76)
Q Consensus 34 ~NMv~~~e~dddl~~eV~eEC~~KyG 59 (76)
.+++......++|.+-+...| ++.|
T Consensus 15 ~~~l~~~~t~~~I~~~l~~~C-~~lP 39 (39)
T PF05184_consen 15 EKLLKNNKTEEEIKKALEKAC-NKLP 39 (39)
T ss_dssp HHHHHSTCHHHHHHHHHHHHH-TTSC
T ss_pred HHHHHcCccHHHHHHHHHHHH-hhCc
Confidence 344445556678889999999 4664
No 64
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=20.99 E-value=54 Score=22.43 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=25.5
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEV 50 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV 50 (76)
++.++||++.....|+.+...--.=..+|.|-..+..++-..|+
T Consensus 85 ~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei 128 (149)
T PTZ00093 85 GRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREI 128 (149)
T ss_pred HHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHH
Confidence 37788999876554444432211224678888877655444433
Done!