Query psy18100
Match_columns 76
No_of_seqs 111 out of 384
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ue2_A Poly(U)-binding-splicin 99.5 3.6E-15 1.2E-19 97.1 4.7 46 25-71 17-62 (118)
2 3v4m_A Splicing factor U2AF 65 99.5 2.2E-14 7.7E-19 90.9 4.9 46 25-71 2-52 (105)
3 2pe8_A Splicing factor 45; RRM 99.5 9.3E-14 3.2E-18 88.2 5.9 46 24-70 4-49 (105)
4 3s6e_A RNA-binding protein 39; 99.4 1.5E-13 5.2E-18 89.0 4.2 44 26-70 5-53 (114)
5 2dit_A HIV TAT specific factor 98.8 6.2E-09 2.1E-13 65.0 3.9 45 24-69 11-61 (112)
6 3dxb_A Thioredoxin N-terminall 98.7 1.1E-08 3.7E-13 69.7 4.6 46 25-71 121-166 (222)
7 1jmt_A Splicing factor U2AF 35 98.7 1.6E-08 5.5E-13 63.5 4.3 42 28-70 1-63 (104)
8 2krb_A Eukaryotic translation 96.6 0.0045 1.5E-07 35.6 5.0 39 28-69 1-42 (81)
9 2nlw_A Eukaryotic translation 95.2 0.073 2.5E-06 32.0 6.2 41 26-69 13-56 (105)
10 3mdf_A Peptidyl-prolyl CIS-tra 95.0 0.043 1.5E-06 31.1 4.4 40 25-70 4-43 (85)
11 2x1f_A MRNA 3'-END-processing 94.9 0.068 2.3E-06 31.3 5.3 39 27-71 1-39 (96)
12 1wex_A Hypothetical protein (r 94.9 0.064 2.2E-06 33.1 5.4 40 24-69 11-50 (104)
13 3r27_A HnRNP L, heterogeneous 94.6 0.074 2.5E-06 33.4 5.1 39 25-69 18-56 (100)
14 1nu4_A U1A RNA binding domain; 94.5 0.063 2.2E-06 31.2 4.4 40 26-68 6-46 (97)
15 3ns6_A Eukaryotic translation 94.4 0.07 2.4E-06 31.9 4.5 44 27-71 5-49 (100)
16 2cqc_A Arginine/serine-rich sp 94.3 0.2 6.7E-06 28.8 6.3 41 25-71 12-52 (95)
17 2cq1_A PTB-like protein L; RRM 94.0 0.072 2.5E-06 32.7 4.1 39 25-69 12-50 (101)
18 2e5h_A Zinc finger CCHC-type a 93.9 0.2 6.9E-06 28.8 5.7 42 24-71 12-53 (94)
19 1x4e_A RNA binding motif, sing 93.6 0.12 4E-06 29.4 4.3 40 26-71 3-42 (85)
20 2ywk_A Putative RNA-binding pr 93.6 0.2 6.8E-06 28.9 5.4 41 25-71 13-53 (95)
21 3lqv_A PRE-mRNA branch site pr 93.5 0.2 6.9E-06 30.0 5.4 39 26-70 6-44 (115)
22 2cqb_A Peptidyl-prolyl CIS-tra 93.5 0.11 3.8E-06 30.5 4.1 42 24-71 8-49 (102)
23 1whw_A Hypothetical protein ri 93.4 0.18 6.2E-06 29.4 4.9 39 26-70 6-44 (99)
24 3s8s_A Histone-lysine N-methyl 93.3 0.28 9.5E-06 30.1 5.9 40 26-71 4-43 (110)
25 2dnh_A Bruno-like 5, RNA bindi 93.3 0.41 1.4E-05 28.1 6.5 39 26-70 13-51 (105)
26 3zzy_A Polypyrimidine tract-bi 93.2 0.14 4.6E-06 33.6 4.5 40 24-69 22-63 (130)
27 2cq3_A RNA-binding protein 9; 93.0 0.36 1.2E-05 28.3 5.9 41 25-71 12-52 (103)
28 3s7r_A Heterogeneous nuclear r 93.0 0.35 1.2E-05 27.4 5.7 40 26-71 9-48 (87)
29 2khc_A Testis-specific RNP-typ 92.9 0.26 8.8E-06 29.7 5.2 39 26-70 38-76 (118)
30 2e5i_A Heterogeneous nuclear r 92.8 0.25 8.6E-06 31.7 5.3 39 25-69 20-60 (124)
31 1l3k_A Heterogeneous nuclear r 92.7 0.32 1.1E-05 30.8 5.7 39 26-70 102-140 (196)
32 2ad9_A Polypyrimidine tract-bi 92.5 0.17 5.9E-06 32.4 4.2 39 25-69 28-66 (119)
33 3nmr_A Cugbp ELAV-like family 92.5 0.27 9.3E-06 30.4 5.1 40 26-71 93-132 (175)
34 2dgo_A Cytotoxic granule-assoc 92.4 0.5 1.7E-05 28.2 6.1 39 26-70 13-51 (115)
35 2qfj_A FBP-interacting repress 92.4 0.39 1.3E-05 30.9 5.9 39 26-70 123-161 (216)
36 2a3j_A U1 small nuclear ribonu 92.3 0.18 6.2E-06 32.2 4.1 40 26-68 27-67 (127)
37 1why_A Hypothetical protein ri 92.1 0.61 2.1E-05 27.1 6.1 39 25-69 14-52 (97)
38 2cpz_A CUG triplet repeat RNA- 92.1 0.26 8.9E-06 29.6 4.5 39 26-70 23-61 (115)
39 1x4f_A Matrin 3; structural ge 92.1 0.21 7.1E-06 31.7 4.2 40 25-69 22-61 (112)
40 2cqi_A Nucleolysin TIAR; RNA r 92.1 0.53 1.8E-05 27.6 5.8 41 25-71 12-52 (103)
41 4f02_A Polyadenylate-binding p 92.1 0.36 1.2E-05 32.0 5.5 40 26-71 13-52 (213)
42 2cpf_A RNA binding motif prote 92.0 0.31 1.1E-05 28.3 4.7 40 26-71 3-42 (98)
43 2dnz_A Probable RNA-binding pr 92.0 0.55 1.9E-05 26.9 5.7 40 26-71 3-42 (95)
44 3ulh_A THO complex subunit 4; 91.9 0.39 1.3E-05 28.3 5.0 39 26-70 27-65 (107)
45 4a8x_A RNA-binding protein wit 91.8 0.25 8.5E-06 27.9 4.0 38 27-70 3-40 (88)
46 2dgp_A Bruno-like 4, RNA bindi 91.8 0.24 8.3E-06 29.2 4.0 41 25-71 10-50 (106)
47 1x4a_A Splicing factor, argini 91.7 0.64 2.2E-05 27.6 5.9 40 25-70 19-58 (109)
48 1x5u_A Splicing factor 3B subu 91.7 0.54 1.8E-05 27.5 5.5 39 26-70 13-51 (105)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.6 0.42 1.4E-05 29.2 5.1 41 25-71 60-100 (140)
50 2dnq_A RNA-binding protein 4B; 91.6 0.43 1.5E-05 27.4 4.9 36 26-67 6-41 (90)
51 3md3_A Nuclear and cytoplasmic 91.5 0.54 1.8E-05 28.7 5.5 39 26-70 85-123 (166)
52 1sjr_A Polypyrimidine tract-bi 91.3 0.2 6.8E-06 34.1 3.7 39 25-69 41-81 (164)
53 2cpd_A Apobec-1 stimulating pr 91.2 0.82 2.8E-05 26.6 5.9 39 24-68 11-51 (99)
54 2la6_A RNA-binding protein FUS 91.1 0.79 2.7E-05 26.7 5.8 42 24-71 9-58 (99)
55 1wf0_A TDP-43, TAR DNA-binding 91.0 0.25 8.6E-06 28.3 3.4 38 26-69 3-40 (88)
56 2dgt_A RNA-binding protein 30; 91.0 0.44 1.5E-05 27.5 4.5 38 25-68 7-44 (92)
57 3pgw_A U1-A; protein-RNA compl 90.9 0.55 1.9E-05 31.9 5.6 39 25-69 204-242 (282)
58 2yh0_A Splicing factor U2AF 65 90.8 0.93 3.2E-05 28.7 6.3 39 26-70 112-150 (198)
59 1qm9_A Polypyrimidine tract-bi 90.7 0.27 9.3E-06 31.6 3.7 38 25-68 117-155 (198)
60 2do4_A Squamous cell carcinoma 90.6 1.3 4.5E-05 25.6 6.5 40 25-70 14-53 (100)
61 1x5p_A Negative elongation fac 90.5 1.1 3.6E-05 26.1 6.0 36 26-69 13-48 (97)
62 2jvo_A Nucleolar protein 3; nu 90.5 0.44 1.5E-05 28.9 4.4 36 26-67 29-64 (108)
63 2d9p_A Polyadenylate-binding p 90.5 0.71 2.4E-05 27.0 5.2 38 26-69 13-50 (103)
64 1x4d_A Matrin 3; structural ge 90.4 0.51 1.7E-05 29.1 4.7 40 25-69 12-51 (102)
65 1h2v_Z 20 kDa nuclear CAP bind 90.3 0.89 3.1E-05 28.7 5.9 40 26-71 37-76 (156)
66 2g4b_A Splicing factor U2AF 65 90.2 0.9 3.1E-05 28.1 5.7 39 26-70 92-130 (172)
67 1b7f_A Protein (SXL-lethal pro 90.1 1 3.5E-05 27.6 5.9 39 26-70 87-125 (168)
68 2adc_A Polypyrimidine tract-bi 90.1 0.55 1.9E-05 31.4 5.0 45 21-70 27-71 (229)
69 2ghp_A U4/U6 snRNA-associated 90.1 0.43 1.5E-05 32.6 4.5 41 25-71 207-248 (292)
70 2cjk_A Nuclear polyadenylated 90.0 0.78 2.7E-05 28.3 5.3 39 27-71 2-40 (167)
71 1whx_A Hypothetical protein ri 89.9 0.44 1.5E-05 28.9 4.0 38 26-69 8-45 (111)
72 2kt5_A RNA and export factor-b 89.8 0.59 2E-05 28.4 4.6 40 25-70 32-71 (124)
73 3tyt_A Heterogeneous nuclear r 89.8 0.5 1.7E-05 31.8 4.6 40 25-69 1-40 (205)
74 4fxv_A ELAV-like protein 1; RN 89.8 0.44 1.5E-05 28.5 3.9 37 29-71 20-56 (99)
75 2div_A TRNA selenocysteine ass 89.8 0.62 2.1E-05 27.0 4.5 39 26-70 7-46 (99)
76 1l3k_A Heterogeneous nuclear r 89.8 0.96 3.3E-05 28.6 5.7 41 25-71 10-50 (196)
77 1u6f_A Tcubp1, RNA-binding pro 89.5 0.46 1.6E-05 29.3 4.0 40 26-71 40-79 (139)
78 3md1_A Nuclear and cytoplasmic 89.5 0.55 1.9E-05 26.2 4.0 37 29-71 2-38 (83)
79 2adc_A Polypyrimidine tract-bi 89.5 0.69 2.3E-05 30.9 5.1 38 25-68 148-186 (229)
80 2ytc_A PRE-mRNA-splicing facto 89.4 1.3 4.3E-05 24.8 5.5 38 26-69 10-47 (85)
81 2dgx_A KIAA0430 protein; RRM d 89.4 0.71 2.4E-05 27.0 4.6 41 28-71 9-50 (96)
82 2do0_A HnRNP M, heterogeneous 89.4 0.93 3.2E-05 26.9 5.1 40 25-70 12-51 (114)
83 1b7f_A Protein (SXL-lethal pro 89.3 0.66 2.2E-05 28.5 4.5 38 27-70 2-39 (168)
84 3d2w_A TAR DNA-binding protein 89.1 0.31 1.1E-05 28.6 2.8 38 26-69 9-46 (89)
85 2dgu_A Heterogeneous nuclear r 89.1 0.52 1.8E-05 27.8 3.8 37 26-68 9-45 (103)
86 2dgv_A HnRNP M, heterogeneous 89.0 1 3.5E-05 25.6 5.0 38 26-69 6-43 (92)
87 1fxl_A Paraneoplastic encephal 89.0 1.6 5.4E-05 26.6 6.1 39 26-70 86-124 (167)
88 2cpj_A Non-POU domain-containi 88.9 1 3.6E-05 26.1 5.0 38 26-69 13-50 (99)
89 3bs9_A Nucleolysin TIA-1 isofo 88.7 0.64 2.2E-05 26.1 3.9 39 26-70 4-42 (87)
90 1oo0_B CG8781-PA, drosophila Y 88.6 1.7 5.8E-05 25.6 5.9 41 24-70 22-62 (110)
91 3pgw_A U1-A; protein-RNA compl 88.6 0.68 2.3E-05 31.4 4.6 40 26-68 7-47 (282)
92 1s79_A Lupus LA protein; RRM, 88.6 0.56 1.9E-05 28.4 3.8 39 27-71 10-48 (103)
93 3ex7_B RNA-binding protein 8A; 88.5 1.3 4.4E-05 26.8 5.4 41 24-70 18-58 (126)
94 2dnm_A SRP46 splicing factor; 88.5 1.3 4.5E-05 25.8 5.3 40 26-71 11-50 (103)
95 2err_A Ataxin-2-binding protei 88.5 0.57 2E-05 28.2 3.8 41 24-70 25-65 (109)
96 2lea_A Serine/arginine-rich sp 88.4 1.1 3.7E-05 28.2 5.2 45 20-70 39-83 (135)
97 2lxi_A RNA-binding protein 10; 88.4 0.22 7.4E-06 29.3 1.8 38 28-71 1-39 (91)
98 1x5t_A Splicing factor 3B subu 88.4 0.65 2.2E-05 26.7 3.8 39 26-70 3-42 (96)
99 1p27_B RNA-binding protein 8A; 88.4 1.7 5.8E-05 25.4 5.8 42 24-71 19-60 (106)
100 1wi8_A EIF-4B, eukaryotic tran 88.2 1 3.6E-05 26.4 4.8 39 26-71 13-51 (104)
101 1uaw_A Mouse-musashi-1; RNP-ty 88.1 0.36 1.2E-05 26.6 2.5 24 47-71 14-37 (77)
102 2cq0_A Eukaryotic translation 88.0 1.4 4.8E-05 25.7 5.2 40 25-70 12-51 (103)
103 2cq2_A Hypothetical protein LO 87.9 0.49 1.7E-05 30.2 3.3 37 26-68 23-61 (114)
104 2dnr_A Synaptojanin-1; RRM dom 87.7 1.3 4.3E-05 27.8 5.1 27 42-69 24-50 (91)
105 1x5s_A Cold-inducible RNA-bind 87.4 0.88 3E-05 26.5 4.1 41 25-71 9-49 (102)
106 3ucg_A Polyadenylate-binding p 87.4 0.85 2.9E-05 25.7 3.9 38 27-70 5-42 (89)
107 2kxn_B Transformer-2 protein h 87.3 1.3 4.6E-05 27.6 5.1 41 25-71 43-83 (129)
108 2m2b_A RNA-binding protein 10; 87.2 1.1 3.7E-05 27.7 4.6 43 22-70 17-61 (131)
109 2d9o_A DNAJ (HSP40) homolog, s 87.1 1.9 6.5E-05 26.4 5.6 42 26-68 8-51 (100)
110 3tyt_A Heterogeneous nuclear r 87.0 0.68 2.3E-05 31.1 3.8 39 26-70 121-161 (205)
111 1p1t_A Cleavage stimulation fa 87.0 0.48 1.6E-05 27.7 2.7 39 26-70 6-44 (104)
112 2j76_E EIF-4B, EIF4B, eukaryot 87.0 0.8 2.7E-05 26.9 3.7 41 23-70 14-54 (100)
113 2cqd_A RNA-binding region cont 86.9 3.4 0.00011 24.6 6.7 41 25-71 14-54 (116)
114 1x4h_A RNA-binding protein 28; 86.7 2.8 9.6E-05 24.5 6.1 41 25-71 12-52 (111)
115 2cph_A RNA binding motif prote 86.5 2.2 7.5E-05 24.8 5.5 39 25-69 12-50 (107)
116 1sjq_A Polypyrimidine tract-bi 86.4 0.87 3E-05 28.5 3.8 40 24-69 12-51 (105)
117 2i2y_A Fusion protein consists 86.2 1.8 6.2E-05 27.0 5.3 39 25-69 70-108 (150)
118 2mss_A Protein (musashi1); RNA 86.0 0.45 1.6E-05 26.2 2.1 24 47-71 13-36 (75)
119 2dgs_A DAZ-associated protein 85.9 1.2 3.9E-05 25.9 4.0 40 26-71 8-47 (99)
120 1fxl_A Paraneoplastic encephal 85.8 2.7 9.1E-05 25.5 5.8 38 27-70 1-38 (167)
121 2rs2_A Musashi-1, RNA-binding 85.6 1.2 4E-05 26.8 4.0 42 24-71 21-62 (109)
122 4f25_A Polyadenylate-binding p 85.3 0.74 2.5E-05 27.9 3.0 36 29-70 6-41 (115)
123 3ue2_A Poly(U)-binding-splicin 85.2 0.2 6.9E-06 31.7 0.4 34 3-36 21-61 (118)
124 2dh8_A DAZ-associated protein 85.1 1.3 4.3E-05 26.0 3.9 40 26-71 14-53 (105)
125 3smz_A Protein raver-1, ribonu 85.1 1 3.5E-05 30.5 3.9 40 26-70 182-221 (284)
126 2cqg_A TDP-43, TAR DNA-binding 84.7 1.3 4.5E-05 25.8 3.9 41 25-71 12-52 (103)
127 2dng_A Eukaryotic translation 84.0 3.3 0.00011 24.1 5.5 39 26-71 13-51 (103)
128 2kvi_A Nuclear polyadenylated 83.8 1.8 6.1E-05 25.1 4.2 38 26-68 8-45 (96)
129 2xnq_A Nuclear polyadenylated 83.4 2.5 8.4E-05 24.8 4.7 39 24-67 18-56 (97)
130 2cpe_A RNA-binding protein EWS 83.3 2.4 8.3E-05 25.0 4.7 39 26-70 13-59 (113)
131 3sde_A Paraspeckle component 1 83.2 2.1 7.2E-05 29.1 4.9 40 25-70 93-132 (261)
132 3u1l_A PRE-mRNA-splicing facto 82.8 2 6.9E-05 30.5 4.8 41 25-68 131-177 (240)
133 3tht_A Alkylated DNA repair pr 82.6 1.6 5.5E-05 32.6 4.4 40 25-68 15-54 (345)
134 1x4b_A Heterogeneous nuclear r 82.5 1.4 4.6E-05 26.4 3.3 41 25-71 24-64 (116)
135 1x4c_A Splicing factor, argini 82.5 1.4 4.8E-05 26.2 3.4 38 26-69 13-50 (108)
136 2cq4_A RNA binding motif prote 82.4 2 6.9E-05 25.5 4.1 40 26-71 23-62 (114)
137 2jrs_A RNA-binding protein 39; 82.3 1.4 4.8E-05 26.5 3.3 47 17-70 16-62 (108)
138 1rk8_A CG8781-PA, CG8781-PA pr 82.3 4 0.00014 26.0 5.8 39 26-70 70-108 (165)
139 1iqt_A AUF1, heterogeneous nuc 82.1 0.55 1.9E-05 25.8 1.3 24 47-71 13-36 (75)
140 2f3j_A RNA and export factor b 81.9 2.1 7.2E-05 28.2 4.4 39 26-70 86-124 (177)
141 2xs2_A Deleted in azoospermia- 81.7 1.6 5.6E-05 25.3 3.4 39 26-70 7-45 (102)
142 3md3_A Nuclear and cytoplasmic 81.6 1.8 6.2E-05 26.2 3.7 37 29-71 1-37 (166)
143 2jwn_A Embryonic polyadenylate 81.4 1.7 5.8E-05 26.1 3.5 39 26-70 34-72 (124)
144 2bz2_A Negative elongation fac 80.9 1.4 4.9E-05 27.3 3.1 35 26-68 37-71 (121)
145 3pgw_S U1-70K; protein-RNA com 80.7 2.7 9.1E-05 31.8 5.1 40 25-70 99-138 (437)
146 2dnp_A RNA-binding protein 14; 80.7 1.1 3.8E-05 25.5 2.4 37 26-68 7-43 (90)
147 1wf1_A RNA-binding protein RAL 80.4 3.8 0.00013 24.2 4.8 37 26-67 25-61 (110)
148 2e44_A Insulin-like growth fac 79.7 1.6 5.4E-05 25.0 2.8 40 26-71 13-53 (96)
149 1qm9_A Polypyrimidine tract-bi 79.5 2.3 8E-05 27.1 3.8 38 28-70 3-40 (198)
150 3nmr_A Cugbp ELAV-like family 78.8 2 6.7E-05 26.4 3.2 39 27-71 2-40 (175)
151 2pe8_A Splicing factor 45; RRM 78.7 0.75 2.6E-05 28.1 1.2 22 3-24 9-30 (105)
152 2cpi_A CCR4-NOT transcription 78.5 1.1 3.8E-05 26.9 1.9 40 26-71 13-55 (111)
153 2kn4_A Immunoglobulin G-bindin 78.4 1.5 5.1E-05 27.4 2.6 39 26-70 68-106 (158)
154 2hvz_A Splicing factor, argini 77.8 1 3.6E-05 26.1 1.6 22 47-69 14-35 (101)
155 2cjk_A Nuclear polyadenylated 77.6 1.7 5.8E-05 26.7 2.7 39 26-70 85-123 (167)
156 2dhg_A TRNA selenocysteine ass 77.3 2.4 8.3E-05 24.6 3.2 39 26-70 7-46 (104)
157 2fy1_A RNA-binding motif prote 77.0 1.9 6.5E-05 26.2 2.7 39 26-70 5-43 (116)
158 1x5o_A RNA binding motif, sing 76.8 2 6.8E-05 25.4 2.7 39 26-70 23-61 (114)
159 3p5t_L Cleavage and polyadenyl 76.7 2 7E-05 24.6 2.7 24 47-71 15-40 (90)
160 2ki2_A SS-DNA binding protein 76.6 0.74 2.5E-05 26.2 0.7 24 47-71 15-38 (90)
161 1x4g_A Nucleolysin TIAR; struc 76.5 1.8 6.1E-05 25.6 2.5 39 25-69 22-60 (109)
162 2la4_A Nuclear and cytoplasmic 76.2 2.3 7.9E-05 24.6 2.9 37 27-69 26-62 (101)
163 1owx_A Lupus LA protein, SS-B, 74.6 5.9 0.0002 25.5 4.7 38 28-70 18-55 (121)
164 2qfj_A FBP-interacting repress 74.4 3.4 0.00012 26.3 3.6 39 26-70 26-64 (216)
165 2e5g_A U6 snRNA-specific termi 74.2 4.4 0.00015 23.2 3.7 35 26-66 6-40 (94)
166 3beg_B Splicing factor, argini 73.6 2.3 7.7E-05 25.7 2.4 36 28-69 16-51 (115)
167 2ghp_A U4/U6 snRNA-associated 71.9 7.7 0.00026 26.2 5.1 41 25-71 38-78 (292)
168 1ufw_A Synaptojanin 2; RNP dom 71.8 3.1 0.00011 26.3 2.8 45 24-69 11-59 (95)
169 4f02_A Polyadenylate-binding p 71.2 3.4 0.00012 27.2 3.0 38 27-70 102-139 (213)
170 2diu_A KIAA0430 protein; struc 71.0 5.5 0.00019 25.1 3.8 36 26-64 6-44 (96)
171 2voo_A Lupus LA protein; RNA-b 70.9 4.5 0.00015 26.9 3.6 38 27-70 108-145 (193)
172 2cqp_A RNA-binding protein 12; 69.7 3.4 0.00012 23.7 2.5 37 26-68 13-49 (98)
173 2dis_A Unnamed protein product 69.6 3.7 0.00012 24.0 2.7 36 26-67 6-42 (109)
174 2wbr_A GW182, gawky, LD47780P; 68.0 2.8 9.6E-05 26.0 1.9 35 28-68 7-41 (89)
175 2e5j_A Methenyltetrahydrofolat 66.3 12 0.00042 21.3 4.5 31 26-62 17-47 (97)
176 3n9u_C Cleavage and polyadenyl 65.3 7.3 0.00025 25.1 3.7 39 27-71 54-94 (156)
177 3smz_A Protein raver-1, ribonu 62.1 9.4 0.00032 25.7 3.9 40 25-70 92-131 (284)
178 2lkz_A RNA-binding protein 5; 61.2 3.1 0.00011 24.8 1.2 38 28-71 9-48 (95)
179 3q2s_C Cleavage and polyadenyl 61.0 10 0.00035 25.8 3.9 37 28-70 68-106 (229)
180 2j8a_A Histone-lysine N-methyl 60.5 7.7 0.00026 26.0 3.1 26 47-73 20-45 (136)
181 1wg5_A Heterogeneous nuclear r 60.1 8.1 0.00028 22.6 2.9 38 26-69 13-51 (104)
182 2ek1_A RNA-binding protein 12; 57.1 2.5 8.5E-05 24.0 0.2 38 26-69 13-50 (95)
183 2dnl_A Cytoplasmic polyadenyla 50.7 8.7 0.0003 22.9 2.0 38 26-70 6-43 (114)
184 2cpy_A RNA-binding protein 12; 45.9 8.5 0.00029 22.9 1.4 40 25-70 12-52 (114)
185 1fje_B Nucleolin RBD12, protei 45.0 32 0.0011 21.0 4.0 33 26-64 97-129 (175)
186 2lcw_A RNA-binding protein FUS 49.8 4.9 0.00017 23.9 0.0 38 26-69 5-50 (116)
187 2hgn_A Heterogeneous nuclear r 43.6 13 0.00045 23.7 2.1 38 26-70 44-81 (139)
188 3sde_A Paraspeckle component 1 42.4 15 0.00051 24.8 2.3 38 26-69 20-57 (261)
189 2db1_A Heterogeneous nuclear r 42.0 11 0.00036 22.8 1.4 40 26-71 15-57 (118)
190 2hzc_A Splicing factor U2AF 65 39.0 23 0.0008 19.3 2.5 38 26-69 4-52 (87)
191 2jvr_A Nucleolar protein 3; RN 38.5 11 0.00036 23.2 1.0 35 28-68 28-63 (111)
192 2cpx_A Hypothetical protein FL 37.2 22 0.00075 20.6 2.2 31 26-62 23-53 (115)
193 2cqh_A IGF-II mRNA-binding pro 36.6 10 0.00035 21.4 0.6 36 26-67 6-42 (93)
194 2xj4_A MIPZ; replication, cell 36.4 28 0.00094 23.8 2.9 40 28-68 179-220 (286)
195 1wez_A HnRNP H', FTP-3, hetero 35.6 18 0.00062 21.3 1.7 38 26-70 13-50 (102)
196 2hgl_A HNRPF protein, heteroge 35.5 15 0.0005 23.3 1.3 40 26-71 42-84 (136)
197 2dha_A FLJ20171 protein; RRM d 34.1 21 0.00072 22.2 1.9 38 26-69 21-62 (123)
198 2dgw_A Probable RNA-binding pr 29.8 49 0.0017 18.3 2.9 37 26-69 8-44 (91)
199 4ds1_A Dynein light chain 1, c 29.5 32 0.0011 21.1 2.1 25 44-68 44-68 (97)
200 2fc9_A NCL protein; structure 29.4 54 0.0019 18.4 3.1 31 25-61 12-42 (101)
201 2dnn_A RNA-binding protein 12; 28.6 45 0.0015 20.1 2.7 38 26-70 14-51 (109)
202 1fj7_A Nucleolin RBD1, protein 28.2 51 0.0017 18.6 2.8 32 26-63 15-46 (101)
203 2lmi_A GRSF-1, G-rich sequence 27.8 15 0.00053 21.5 0.4 40 26-71 9-51 (107)
204 1yo3_A Dynein light chain 1; s 26.9 37 0.0013 21.1 2.1 26 43-68 48-73 (102)
205 1wel_A RNA-binding protein 12; 25.4 22 0.00075 21.3 0.8 32 26-63 23-54 (124)
206 3rjs_A Dynein light chain moto 25.2 35 0.0012 20.5 1.7 25 44-68 36-60 (89)
207 4hr2_A Nucleoside diphosphate 24.5 12 0.00042 24.8 -0.6 45 7-51 90-134 (145)
208 3byp_A CZRB protein; membrane 23.6 53 0.0018 18.7 2.3 28 44-72 60-87 (94)
209 3evo_A NDP kinase, NDK, nucleo 23.6 15 0.00052 24.2 -0.2 45 7-51 90-134 (146)
210 2fc8_A NCL protein; structure 22.7 98 0.0033 17.3 3.3 32 25-62 12-43 (102)
211 3mpd_A Nucleoside diphosphate 22.6 14 0.00049 24.5 -0.5 45 7-51 88-132 (151)
212 1fjc_A Nucleolin RBD2, protein 21.9 29 0.001 19.4 0.8 33 26-64 14-46 (96)
213 1wkj_A Nucleoside diphosphate 21.7 15 0.0005 23.9 -0.6 45 7-51 84-128 (137)
214 3h90_A Ferrous-iron efflux pum 21.4 61 0.0021 22.4 2.5 28 44-72 254-281 (283)
215 3r9l_A Nucleoside diphosphate 21.2 16 0.00055 24.4 -0.5 45 7-51 90-134 (155)
216 3l7u_A Nucleoside diphosphate 20.9 19 0.00064 24.6 -0.2 45 7-51 107-151 (172)
217 3q8u_A Nucleoside diphosphate 20.8 19 0.00064 24.2 -0.2 45 7-51 84-128 (157)
218 1nb2_A Nucleoside diphosphate 20.2 21 0.00073 23.6 -0.0 45 7-51 85-129 (150)
No 1
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=3.6e-15 Score=97.08 Aligned_cols=46 Identities=46% Similarity=0.685 Sum_probs=42.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++||+||+|+|||+|+|+++||++||++|| +|||.|.+|.|++...
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCC
Confidence 368999999999999999999999999999 6999999999998753
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=2.2e-14 Score=90.90 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=41.3
Q ss_pred ccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
+.|||||+|+|||+|+++.+ ++++|+++|| +|||.|.+|.|++...
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVD 52 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCC
Confidence 47899999999999999876 4889999999 6999999999998753
No 3
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=9.3e-14 Score=88.18 Aligned_cols=46 Identities=50% Similarity=0.764 Sum_probs=40.2
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+.||+||+|+||++|+++++++++|++++| +|||.|.+|.|++.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~ 49 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIP 49 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECS
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCC
Confidence 4689999999999999999999999999999 699999999999864
No 4
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.41 E-value=1.5e-13 Score=89.05 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=39.8
Q ss_pred cccceeeeeccCCCCcc-----ccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEV-----DSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~-----dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.||+||+|+|||+++|+ .+||++||++|| +|||.|.+|.|++.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~ 53 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS 53 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC
Confidence 68999999999999884 568999999999 699999999998865
No 5
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=6.2e-09 Score=65.03 Aligned_cols=45 Identities=16% Similarity=0.448 Sum_probs=38.7
Q ss_pred cccccceeeeeccCCCCcccc------chHHHHHHHHhhcCcceEEEEEecC
Q psy18100 24 VKEECNTKYGENMVGPGEVDS------DLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dd------dl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+.+|++|+|+||+++.++.+ ++++|+++.| ++||.|.+|.|++.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i~~~ 61 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLLFDR 61 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEEETT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEEecC
Confidence 447899999999999988654 4889999999 69999999998653
No 6
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=1.1e-08 Score=69.72 Aligned_cols=46 Identities=43% Similarity=0.632 Sum_probs=41.6
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++++.|.||++++++++++++|+++|| +|||.|.++.|++...
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~-~~~G~v~~~~v~~~~~ 166 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQ 166 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEC
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHH-HccCCeEEEEEecCCC
Confidence 356789999999999999999999999999 6999999999986543
No 7
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.69 E-value=1.6e-08 Score=63.48 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=33.2
Q ss_pred cceeeeeccC-CCCccc-------------------cchHHHHHHHH-hhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMV-GPGEVD-------------------SDLEPEVKDEC-NTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv-~~~e~d-------------------ddl~~eV~eEC-~~KyG~V~~v~I~~~~ 70 (76)
|++|+|+||+ +|+... +++.+|++++| + |||.|.+|.|++..
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~ 63 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNL 63 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSS
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCC
Confidence 6889999999 464321 35779999999 7 99999999999754
No 8
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.61 E-value=0.0045 Score=35.58 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=30.3
Q ss_pred cceeeeeccCCCCccccc---hHHHHHHHHhhcCcceEEEEEecC
Q psy18100 28 CNTKYGENMVGPGEVDSD---LEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 28 s~vl~L~NMv~~~e~ddd---l~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++.|.+.|+ |...++. .++++++.+ ++||.|.++.|++.
T Consensus 1 ~~~l~V~nL--p~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~~~ 42 (81)
T 2krb_A 1 DSVIVVDNV--PQVGPDRLEKLKNVIHKIF-SKFGKITNDFYPEE 42 (81)
T ss_dssp CCEEEEESC--CCCCTTTHHHHHHHHHHHH-HTTCCEEEEECCCB
T ss_pred CCEEEEeCC--CCCcHHHHHHHHHHHHHHH-hhcCCeEEEEecCC
Confidence 367888888 4444432 679999999 69999999999853
No 9
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.22 E-value=0.073 Score=31.99 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=32.5
Q ss_pred cccceeeeeccCCCCccccc---hHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSD---LEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~ddd---l~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..++.|.+.|+-. ..+++ .++++++-+ ++||.|.+|.|++.
T Consensus 13 ~~~~~l~V~nLp~--~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~~~ 56 (105)
T 2nlw_A 13 GIDSVIVVDNVPQ--VGPDRLEKLKNVIHKIF-SKFGKITNDFYPEE 56 (105)
T ss_dssp SCCSEEEEESCCC--CCTTTTTHHHHHHHHHH-GGGSCEEEEECCCB
T ss_pred CCCCEEEEeCCCc--chhhhhHHHHHHHHHHH-hcCCCEEEEEeeCC
Confidence 4467899999853 44443 789999999 69999999999853
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.96 E-value=0.043 Score=31.10 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+- .++. ++++++-+ ++||.|.++.|+..+
T Consensus 4 ~~~~~~l~V~nl~--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~ 43 (85)
T 3mdf_A 4 ATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDY 43 (85)
T ss_dssp CCCSSEEEEECCC--TTCC---HHHHHHHH-GGGSCEEEEECCEET
T ss_pred CCCCCEEEEECCC--CCCC---HHHHHHHH-hccCCEEEEEEEECC
Confidence 3567899999983 3333 47889999 699999999997653
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=94.94 E-value=0.068 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=30.2
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
|++.|.+.|+= .++. ++|+++-+ ++||.|.++.|.....
T Consensus 1 P~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 39 (96)
T 2x1f_A 1 PSRVVYLGSIP--YDQT---EEQILDLC-SNVGPVINLKMMFDPQ 39 (96)
T ss_dssp CCSEEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEECCBCTT
T ss_pred CCcEEEEECCC--CCCC---HHHHHHHH-HhcCCEEEEEEEeCCC
Confidence 57888888883 3333 57789999 6999999999987643
No 12
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.94 E-value=0.064 Score=33.09 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=31.1
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..+|+++|.+.|+- .++ -++|+++-| ++||.|.+|.|.+.
T Consensus 11 ~~~p~~~l~V~nLp--~~~---te~~L~~~F-~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 11 KVSVSPVVHVRGLC--ESV---VEADLVEAL-EKFGTICYVMMMPF 50 (104)
T ss_dssp CCCCCSEEEEESCC--SSC---CHHHHHHHH-TTTSCEEEEEEETT
T ss_pred cCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCEEEEEEECC
Confidence 34678999999963 333 356789999 69999999998753
No 13
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.57 E-value=0.074 Score=33.37 Aligned_cols=39 Identities=10% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+|+++|.++|+- .++ -++|+++-+ ++||.|.++.+.+.
T Consensus 18 ~~ps~~l~V~NLp--~~~---te~~L~~lF-~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 18 TPASPVVHIRGLI--DGV---VEADLVEAL-QEFGPISYVVVMPK 56 (100)
T ss_dssp CCCCSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEETT
T ss_pred CCCCcEEEEeCCC--CCC---CHHHHHHHH-hccCCEEEEEEEcC
Confidence 3689999999984 333 346789999 69999999999754
No 14
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.49 E-value=0.063 Score=31.21 Aligned_cols=40 Identities=13% Similarity=0.431 Sum_probs=31.2
Q ss_pred cccceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+ |.++ +++|++.+.+-+ ++||.|.++.|++
T Consensus 6 ~~~~~l~V~nL--p~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 6 RPNHTIYINNL--NEKIKKDELKKSLHAIF-SRFGQILDILVSR 46 (97)
T ss_dssp CCCSEEEEESC--CTTSCHHHHHHHHHHHH-GGGSCEEEEECCH
T ss_pred CCCCEEEEeCC--CCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc
Confidence 57889999996 3344 356777777999 6999999999873
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.41 E-value=0.07 Score=31.88 Aligned_cols=44 Identities=11% Similarity=-0.059 Sum_probs=34.5
Q ss_pred ccceeeeeccCCCCccc-cchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVD-SDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~d-ddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++|.+.|+=..++.. +-.++++++-+ ++||.|.+|.|+..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~ 49 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEA 49 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCC
Confidence 46789999986544443 45789999999 6999999999987654
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.35 E-value=0.2 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=31.4
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. ++. ++++++-+ ++||.|.++.|...+.
T Consensus 12 ~~~~~~l~v~nlp~--~~t---~~~l~~~f-~~~G~v~~v~i~~~~~ 52 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL--YTT---ERDLREVF-SKYGPIADVSIVYDQQ 52 (95)
T ss_dssp CCGGGCEEEESCCS--SCC---HHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred CCCCCEEEEECCCC--CCC---HHHHHHHH-HhcCCeeEEEEEEcCC
Confidence 36688999999832 233 45789999 6999999999987654
No 17
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.01 E-value=0.072 Score=32.74 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+|+++|.+.|+-. ++ -++|+++-+ ++||.|.+|.|.+.
T Consensus 12 ~~p~~~l~V~nLp~--~~---te~~L~~~F-~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPG--EV---TETEVIALG-LPFGKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCT--TC---CHHHHHHTT-TTTSCEEEEEEETT
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEECC
Confidence 46789999999852 23 346788999 69999999998764
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.87 E-value=0.2 Score=28.81 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=32.1
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..++++.|.+.|+- .++ -++|+++-+ ++||.|.++.|+..+.
T Consensus 12 ~~~~~~~l~V~nlp--~~~---t~~~l~~~f-~~~G~v~~v~i~~~~~ 53 (94)
T 2e5h_A 12 LAPSKSTVYVSNLP--FSL---TNNDLYRIF-SKYGKVVKVTIMKDKD 53 (94)
T ss_dssp CCCCTTSEEEESCC--TTS---CHHHHHHHT-TTTSCEEEEEECCCSS
T ss_pred CCCCCCEEEEECCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence 34567889999984 223 356789999 6999999999987654
No 19
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.64 E-value=0.12 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=30.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+ |.++. ++|+++-+ ++||.|.++.|+..+.
T Consensus 3 ~~~~~l~v~nl--p~~~t---~~~l~~~f-~~~G~i~~~~i~~~~~ 42 (85)
T 1x4e_A 3 SGSSGLYIRGL--QPGTT---DQDLVKLC-QPYGKIVSTKAILDKT 42 (85)
T ss_dssp CCCCEEEEESC--CTTCC---HHHHHTTS-TTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 46788889997 33332 46788999 6999999999987643
No 20
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=93.63 E-value=0.2 Score=28.89 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=31.5
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. .+. ++|+++-+ ++||.|.+|.|+..+.
T Consensus 13 ~~~~~~l~v~nlp~--~~~---~~~l~~~F-~~~G~i~~v~i~~~~~ 53 (95)
T 2ywk_A 13 EEADRTVFVGNLEA--RVR---EEILYELF-LQAGPLTKVTICKDRE 53 (95)
T ss_dssp TTGGGEEEEECCCT--TCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEECCCC--CCC---HHHHHHHH-HhcCCEEEEEEEECCC
Confidence 35678999999832 232 46789999 6999999999987653
No 21
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.51 E-value=0.2 Score=30.02 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=30.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+ |..+. ++|+++-+ ++||.|.++.|+...
T Consensus 6 ~~~~~l~V~nl--p~~~t---~~~l~~~F-~~~G~v~~v~i~~~~ 44 (115)
T 3lqv_A 6 EVNRILYIRNL--PYKIT---AEEMYDIF-GKYGPIRQIRVGNTP 44 (115)
T ss_dssp TCCSEEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEEEECST
T ss_pred CCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEeeCC
Confidence 56789999997 33332 46789999 699999999998654
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.48 E-value=0.11 Score=30.47 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=32.1
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
...+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|+....
T Consensus 8 ~~~~~~~l~V~nLp--~~~t---~~~l~~~f-~~~G~i~~v~i~~~~~ 49 (102)
T 2cqb_A 8 MATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDYE 49 (102)
T ss_dssp SCCCCSCEEEESCC--SSCC---HHHHHHHH-TTTSCCCCEECCCCSS
T ss_pred cCCCCCEEEEeCCC--CCCC---HHHHHHHh-hccCCEEEEEEEecCC
Confidence 34577899999983 3333 57889999 6999999999987543
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.35 E-value=0.18 Score=29.36 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=30.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.++.|+...
T Consensus 6 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 44 (99)
T 1whw_A 6 SGSGRLFVRNLS--YTSS---EEDLEKLF-SAYGPLSELHYPIDS 44 (99)
T ss_dssp CSCEEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCCCT
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEeEEEEEecC
Confidence 467889999983 2333 35799999 699999999998765
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=93.32 E-value=0.28 Score=30.11 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
+|++.|.+.|+= .++. ++++++-+ ++||.|.+|.|+..+.
T Consensus 4 ~p~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~i~~v~i~~d~~ 43 (110)
T 3s8s_A 4 IPLKEVTFARLN--DNVR---ETFLKDMC-RKYGEVEEVEILLHPR 43 (110)
T ss_dssp SCCCEEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEEEECTT
T ss_pred CCCcEEEEECCC--CCCC---HHHHHHHH-HhcCCeeEEEEEECCC
Confidence 567888999973 2232 46788899 6999999999987654
No 25
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=93.31 E-value=0.41 Score=28.10 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=30.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+ |.++. ++++++-+ ++||.|.+|.|+..+
T Consensus 13 ~~~~~l~v~nL--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 13 GRDRKLFVGML--NKQQS---EEDVLRLF-QPFGVIDECTVLRGP 51 (105)
T ss_dssp CCCCEEEEESC--CTTCC---HHHHHHHH-TTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence 56788999998 33333 46789999 699999999998764
No 26
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.21 E-value=0.14 Score=33.58 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred cccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 24 VKEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 24 v~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
...|++|+. +.|+--+ +.+ +++++-+ ++||.|.+|.|+..
T Consensus 22 ~~~ps~VL~I~V~NL~~~--vte---~~L~~lF-s~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYP--VTL---DVLHQIF-SKFGTVLKIITFTK 63 (130)
T ss_dssp ---CCSEEEEEEESCCSC--CCH---HHHHHHH-TTSSCEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCC--CCH---HHHHHHH-hCcCCEEEEEEEcC
Confidence 347788877 8898533 333 3578889 69999999999863
No 27
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.98 E-value=0.36 Score=28.31 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=31.4
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+ |.++. ++|+++-+ ++||.|.+|.|...+.
T Consensus 12 ~~~~~~l~V~nl--p~~~t---~~~l~~~f-~~~G~v~~v~i~~~~~ 52 (103)
T 2cq3_A 12 KSTPKRLHVSNI--PFRFR---DPDLRQMF-GQFGKILDVEIIFNER 52 (103)
T ss_dssp SCCCCEEEEESC--CTTCC---HHHHHHHG-GGTSCEEEEEEECCTT
T ss_pred CCCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 456788999998 33333 46789999 6999999999987643
No 28
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=92.97 E-value=0.35 Score=27.44 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=30.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++++++-+ ++||.|.++.|+..+.
T Consensus 9 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 48 (87)
T 3s7r_A 9 EDAGKMFVGGLS--WDT---SKKDLKDYF-TKFGEVVDCTIKMDPN 48 (87)
T ss_dssp SCTTEEEEECCC--TTC---CHHHHHHHH-TTTSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCEEEEEEeecCC
Confidence 567888999983 333 357788999 6999999999987653
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.88 E-value=0.26 Score=29.68 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=30.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+= .++. ++|+++-+ ++||.|.++.|....
T Consensus 38 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~~~i~~~~ 76 (118)
T 2khc_A 38 PEGCNLFIYHLP--QEFT---DTDLASTF-LPFGNVISAKVFIDK 76 (118)
T ss_dssp CCSEEEEEECSC--TTCC---HHHHHHHT-TTSCEEEEEEECCCS
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEeCC
Confidence 556789999983 3333 47789999 699999999998764
No 30
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.81 E-value=0.25 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=28.6
Q ss_pred ccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+|++++. +.|+--+ +. ++++++-+ ++||.|.+|.|+.-
T Consensus 20 ~~ps~vl~l~V~NL~~~--vt---~~~L~~~F-s~yG~V~~v~i~~~ 60 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYP--IT---VDVLYTVC-NPVGKVQRIVIFKR 60 (124)
T ss_dssp CCCCSEEEEEEESCCSC--CC---HHHHHHHH-TTTSCEEEEEEEES
T ss_pred CCCCcEEEEEEcCcCCC--CC---HHHHHHHH-HhcCCEEEEEEEeC
Confidence 35788875 5787532 32 34789999 69999999999763
No 31
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=92.68 E-value=0.32 Score=30.83 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=30.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+ |.++. ++++++-+ ++||.|.++.|+...
T Consensus 102 ~~~~~l~V~nL--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 102 LTVKKIFVGGI--KEDTE---EHHLRDYF-EQYGKIEVIEIMTDR 140 (196)
T ss_dssp -CCSEEEEECC--TTTCC---HHHHHHHH-TTTSCEEEEEEEECT
T ss_pred CCcceEEEeCC--CCCCC---HHHHHHHH-hcCCCeEEEEEeecC
Confidence 45678999997 33332 57899999 699999999998764
No 32
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.50 E-value=0.17 Score=32.39 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+|+++|.+.|+-. ++ -++|+++-+ ++||.|.+|.|.+.
T Consensus 28 ~~ps~~LfVgNLp~--~v---te~dL~~lF-~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPI--DV---TEGEVISLG-LPFGKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCT--TC---CHHHHHHHH-TTTSCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEeCC
Confidence 46789999999753 22 357789999 69999999999763
No 33
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=92.49 E-value=0.27 Score=30.44 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++++++.+ ++||.|.++.++..+.
T Consensus 93 ~~~~~l~v~nl~--~~~---t~~~l~~~F-~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 93 VEDRKLFIGMIS--KKC---TENDIRVMF-SSFGQIEECRILRGPD 132 (175)
T ss_dssp GGGSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCeEEEcCCC--CcC---CHHHHHHHH-HhCCCEEEEEEEECCC
Confidence 356789999983 222 247899999 6999999999987643
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.42 E-value=0.5 Score=28.22 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=30.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|+...
T Consensus 13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 51 (115)
T 2dgo_A 13 SNHFHVFVGDLS--PEIT---TEDIKAAF-APFGRISDARVVKDM 51 (115)
T ss_dssp TTCEEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEECT
T ss_pred CCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEEcC
Confidence 567889999983 2332 46789999 699999999998764
No 35
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=92.42 E-value=0.39 Score=30.91 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++ -++|+++.| ++||.|.++.|+...
T Consensus 123 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 123 RAFNRIYVASVHQ--DL---SDDDIKSVF-EAFGKIKSATLARDP 161 (216)
T ss_dssp TTSCEEEEECCCT--TC---CHHHHHHHH-TTSSCEEEEEEEECT
T ss_pred CCCcEEEEeCCCC--cC---CHHHHHHHH-hccCCeeEEEEEecC
Confidence 4567899999732 23 267899999 699999999998764
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=92.29 E-value=0.18 Score=32.16 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.3
Q ss_pred cccceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.|++.|.+.|+- ..+ +++|++.+++-+ ++||.|.+|.+..
T Consensus 27 ~p~~~LfV~nL~--~~~~e~~L~~~L~~~F-~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 27 EPSQVVLITNIN--PEVPKEKLQALLYALA-SSQGDILDIVVDL 67 (127)
T ss_dssp SCCSEEEEESCC--TTSCHHHHHHHHHHHH-HHHSCEEEEEECC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHHh-ccCCCeEEEEecc
Confidence 567889999984 334 457888899999 6999999999875
No 37
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.13 E-value=0.61 Score=27.08 Aligned_cols=39 Identities=5% Similarity=0.055 Sum_probs=29.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..+++.|.+.|+-. ++. ++|+++-+ ++||.|.++.+...
T Consensus 14 ~~~~~~l~V~nlp~--~~t---~~~l~~~F-~~~G~v~~v~~~~~ 52 (97)
T 1why_A 14 ANPTTRLWVGGLGP--NTS---LAALAREF-DRFGSIRTIDHVKG 52 (97)
T ss_dssp CCCCSCEEEECCCS--SCC---HHHHHHHH-HTTSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeeEEEEeCC
Confidence 46678899999843 232 47788999 69999999998753
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=92.11 E-value=0.26 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=30.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|....
T Consensus 23 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 23 PEGANLFIYHLP--QEFG---DQDLLQMF-MPFGNVVSAKVFIDK 61 (115)
T ss_dssp STTCCEEEESCC--SSCC---HHHHHHHH-GGGSCCSEEEEEECS
T ss_pred CCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence 566889999984 3333 47889999 699999999998765
No 39
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.11 E-value=0.21 Score=31.69 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.1
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..|+++|.+.|+-... + -++|+++-| ++||.|.+|.|.+.
T Consensus 22 ~~p~~~l~V~NLp~~~-~---te~~L~~lF-~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSG-Y---SDSAVLKLA-EPYGKIKNYILMRM 61 (112)
T ss_dssp SCCCCEEEEESCCCSS-C---CSHHHHTTT-TTTSCCSEEEEETT
T ss_pred CCCCCEEEEeCCCCcc-C---CHHHHHHHH-HhcCCEEEEEEecC
Confidence 5678999999986420 2 346788999 69999999999764
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.09 E-value=0.53 Score=27.58 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=31.6
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .++ -++++++-+ ++||.|.+|.|.....
T Consensus 12 ~~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 52 (103)
T 2cqi_A 12 DGQPRTLYVGNLS--RDV---TEVLILQLF-SQIGPCKSCKMITEHT 52 (103)
T ss_dssp SCCCCEEEEESCC--TTC---CHHHHHHHH-HHHSCEEEEEEECCCC
T ss_pred CCCCCEEEEeCCC--ccC---CHHHHHHHH-HhcCCEeEEEEEecCC
Confidence 3567899999983 233 346789999 6999999999988644
No 41
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=92.05 E-value=0.36 Score=31.99 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=29.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.|++.|.+.|+ |.++. ++++++-+ ++||.|.+|.|.+...
T Consensus 13 ~p~~tlfVgnL--p~~~t---e~~L~~~F-~~~G~I~~v~i~~d~~ 52 (213)
T 4f02_A 13 YPMASLYVGDL--HPDVT---EAMLYEKF-SPAGPILSIRVCRDMI 52 (213)
T ss_dssp --CCEEEEESC--CTTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCcEEEEeCC--CCCCC---HHHHHHHH-HhhCCEEEEEEecccC
Confidence 56788999997 33343 57788999 6999999999987543
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.03 E-value=0.31 Score=28.28 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=30.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|+....
T Consensus 3 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 3 SGSSGLFIKNLN--FSTT---EETLKGVF-SKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCCEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEEEEEEEC
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 467888889883 2232 46789999 6999999999986543
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.99 E-value=0.55 Score=26.94 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=30.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.++.|+..+.
T Consensus 3 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~~ 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHF--NI---TEDMLRGIF-EPFGKIDNIVLMKDSD 42 (95)
T ss_dssp SCCCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEECCSS
T ss_pred CCCcEEEEeCCCC--CC---CHHHHHHHH-HhcCCEeEEEEeecCC
Confidence 4678889999732 22 356789999 6999999999988654
No 44
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=91.89 E-value=0.39 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=30.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|....
T Consensus 27 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 65 (107)
T 3ulh_A 27 ETGGKLLVSNLD--FGVS---DADIQELF-AEFGTLKKAAVHYDR 65 (107)
T ss_dssp CCSEEEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEEEEECT
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence 567899999973 3333 46788999 699999999998765
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=91.80 E-value=0.25 Score=27.89 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=28.1
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.++.|.+.|+ |.++ -++|+++-+ ++||.|.++.|+...
T Consensus 3 ~~~~l~V~nl--p~~~---t~~~l~~~F-~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 3 KPTKVHIGRL--TRNV---TKDHIMEIF-STYGKIKMIDMPVER 40 (88)
T ss_dssp CCCEEEEECC--CTTC---CHHHHHHHH-HTTSCEEEEECCEET
T ss_pred CCCEEEEeCC--CCCC---CHHHHHHHH-HhCCCEEEEEEEeCC
Confidence 3567888887 3333 346889999 699999999997654
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=91.76 E-value=0.24 Score=29.16 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|.....
T Consensus 10 ~~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIP--RNLD---EKDLKPLF-EEFGKIYELTVLKDRF 50 (106)
T ss_dssp CTTCEEEEEESCC--TTCC---HHHHHHHH-HHHSCCCEEECCCCSS
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEecCC
Confidence 3567888999983 3333 35789999 6999999999987643
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.74 E-value=0.64 Score=27.57 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=30.4
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+- .++ -++|+++-+ ++||.|.++.|+...
T Consensus 19 ~~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~v~~~~i~~~~ 58 (109)
T 1x4a_A 19 GNNDCRIYVGNLP--PDI---RTKDIEDVF-YKYGAIRDIDLKNRR 58 (109)
T ss_dssp CCCSSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEECCSS
T ss_pred CCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence 3567889999983 333 346789999 699999999997643
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.74 E-value=0.54 Score=27.54 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=30.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++++++-+ ++||.|.+|.|+...
T Consensus 13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 51 (105)
T 1x5u_A 13 NQDATVYVGGLD--EKVS---EPLLWELF-LQAGPVVNTHMPKDR 51 (105)
T ss_dssp CTTTEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCBCS
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEecC
Confidence 567889999983 3332 46789999 699999999998765
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.62 E-value=0.42 Score=29.21 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=31.0
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .++. ++++++-. ++||.|.++.|+..+.
T Consensus 60 ~~~~~~l~v~nlp--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~~ 100 (140)
T 2ku7_A 60 ATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDYE 100 (140)
T ss_dssp CSSCCEEEEECCC--TTCC---HHHHHHHH-GGGSCEEEEECCCCTT
T ss_pred CCCCcEEEEEeCC--CCCC---HHHHHHHH-HhcCCEEEEEEeecCC
Confidence 3567889999983 2332 37789999 6999999999987643
No 50
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.59 E-value=0.43 Score=27.40 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH 67 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~ 67 (76)
.+++.|.+.|+= .++. ++++++-+ ++||.|.++.|.
T Consensus 6 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~~~ 41 (90)
T 2dnq_A 6 SGMVKLFIGNLP--REAT---EQEIRSLF-EQYGKVLECDII 41 (90)
T ss_dssp SCCEEEEEESCC--SSCC---HHHHHHHH-HTSSCEEEEEEE
T ss_pred CCCeEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEE
Confidence 567888889983 3333 46789999 699999999987
No 51
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=91.47 E-value=0.54 Score=28.70 Aligned_cols=39 Identities=3% Similarity=-0.002 Sum_probs=30.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++ -++++++.+ ++||.|.++.|...+
T Consensus 85 ~~~~~l~v~nl~--~~~---t~~~l~~~f-~~~G~i~~~~i~~~~ 123 (166)
T 3md3_A 85 DDTFNLFVGDLN--VNV---DDETLRNAF-KDFPSYLSGHVMWDM 123 (166)
T ss_dssp TTCEEEEEESCC--TTC---CHHHHHHHH-TTSTTEEEEEEEECT
T ss_pred CCCceEEECCCC--CCC---CHHHHHHHH-hccCCeeEEEEEecC
Confidence 557789999873 233 247899999 699999999998764
No 52
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=91.33 E-value=0.2 Score=34.12 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred ccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
+.|++++. +.|+- ..+. ++++++-| ++||.|.+|.|+..
T Consensus 41 ~~ps~vl~l~VgNL~--~~vt---ed~L~~~F-s~fG~V~~V~i~~k 81 (164)
T 1sjr_A 41 AGQSPVLRIIVENLF--YPVT---LDVLHQIF-SKFGTVLKIITFTK 81 (164)
T ss_dssp CCCCCEEEEEECSCC--SCCC---HHHHHHHH-HHHSCEEEEEEEES
T ss_pred CCCCceEEEEEeCcC--CCCC---HHHHHHHH-HhcCCEEEEEEEeC
Confidence 35677754 67884 2333 35678899 69999999999753
No 53
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.19 E-value=0.82 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcC--cceEEEEEec
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKY--GEVVRVIIHE 68 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~Ky--G~V~~v~I~~ 68 (76)
...+++.|.+.|+-. ++. ++++++-+ ++| |.|.++.+++
T Consensus 11 ~~~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 11 TMSSVKILYVRNLML--STS---EEMIEKEF-NNIKPGAVERVKKIR 51 (99)
T ss_dssp CSSCCCEEEEESCCT--TCC---HHHHHHHH-HTTSTTCEEEEEECS
T ss_pred ccCCcCEEEEeCCCC--CCC---HHHHHHHH-HhcCCcceEEEEEeC
Confidence 345688999999842 232 46788999 699 9999998864
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=91.09 E-value=0.79 Score=26.67 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.6
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE--------EEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR--------VIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~--------v~I~~~~~ 71 (76)
...+++.|.+.|+- .++. ++|+++-+ ++||.|.+ +.|+....
T Consensus 9 ~~~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~ 58 (99)
T 2la6_A 9 SHSDNNTIFVQGLG--ENVT---IESVADYF-KQIGIIKTNKKTGQPMINLYTDRE 58 (99)
T ss_dssp SCCCCSEEEEECCC--SSCC---HHHHHHHH-TTTSCBCEETTTTEESEEEEECTT
T ss_pred CCCCCCEEEEeCCC--CCCC---HHHHHHHH-HHhCCEeeccccccccEEEEecCC
Confidence 34667899999983 3332 57889999 69999999 88887643
No 55
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.01 E-value=0.25 Score=28.31 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=29.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+ |.++. ++|+++-+ ++||.|.++.|+..
T Consensus 3 ~~~~~l~V~nL--p~~~t---e~~l~~~F-~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRC--TGDMT---EDELREFF-SQYGDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESC--CSSSC---HHHHHHHS-TTTSCCCEEECCSS
T ss_pred CCCcEEEEeCC--CCCCC---HHHHHHHH-HHcCCeeEEEEecC
Confidence 45678888888 33343 46788999 69999999999754
No 56
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.98 E-value=0.44 Score=27.47 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.2
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
..+++.|.+.|+ |.++ -++|+++-+ ++||.|.++.|.+
T Consensus 7 ~~~~~~l~V~nL--p~~~---t~~~l~~~F-~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 7 GKASTKLHVGNI--SPTC---TNQELRAKF-EEYGPVIECDIVK 44 (92)
T ss_dssp CCSSEEEEEESC--CSSC---CHHHHHHHH-HTTSCCCEEEECS
T ss_pred CCCCCEEEEeCC--CCCC---CHHHHHHHH-HhcCCeEEEEEEC
Confidence 356788999998 3333 346788999 6999999999874
No 57
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=90.87 E-value=0.55 Score=31.86 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=30.8
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..++++|.+.|+- .++ -++++++.| ++||.|.++.|+..
T Consensus 204 ~~~~~~l~v~nl~--~~~---~~~~l~~~F-~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 204 NPPNHILFLTNLP--EET---NELMLSMLF-NQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCEEEEeCCC--CcC---CHHHHHHHH-HhcCCeEEEEEecC
Confidence 3567899999984 223 357899999 69999999999854
No 58
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=90.77 E-value=0.93 Score=28.68 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=31.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++++++.| ++||.|.++.++..+
T Consensus 112 ~~~~~l~v~nl~~--~~---~~~~l~~~f-~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPN--YL---NDDQVKELL-TSFGPLKAFNLVKDS 150 (198)
T ss_dssp CCCCEEEEECCCT--TC---CHHHHHHHH-HTBSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HHcCCccEEEEeecC
Confidence 5678899999853 22 257899999 699999999998764
No 59
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.70 E-value=0.27 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.041 Sum_probs=29.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~ 68 (76)
.+|+++|.+.|+-. ++ -++++++.+ ++|| .|.++.|..
T Consensus 117 ~~~~~~l~v~nl~~--~~---~~~~l~~~f-~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 117 FPPSATLHLSNIPP--SV---SEEDLKVLF-SSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCCEEEECCCCT--TC---CHHHHHHHH-HHTTSCCCEEEESS
T ss_pred CCCccEEEEeCCCC--CC---CHHHHHHHH-HHcCCCceEEEEEe
Confidence 35688999999843 33 257899999 6999 999999954
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.62 E-value=1.3 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+-. ++ -++|+++-+ ++||.|.++.|+...
T Consensus 14 ~~~~~~l~v~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 14 SLEKHKLFISGLPF--SC---TKEELEEIC-KAHGTVKDLRLVTNR 53 (100)
T ss_dssp CCCCSCEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeEEEEEEECC
Confidence 35678899999843 23 246789999 699999999998765
No 61
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=1.1 Score=26.08 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=27.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+ + --++|+++-+ ++||.|.+|.|...
T Consensus 13 ~~~~~l~V~n~----~---~t~~~l~~~F-~~~G~i~~v~i~~~ 48 (97)
T 1x5p_A 13 RKGNTLYVYGE----D---MTPTLLRGAF-SPFGNIIDLSMDPP 48 (97)
T ss_dssp CCCSEEEEECS----S---CCHHHHHHHH-TTTSCEEEEEEETT
T ss_pred CCCCEEEEcCC----C---CCHHHHHHHH-hhCCCEEEEEecCC
Confidence 46678888993 2 2357899999 69999999999643
No 62
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=90.48 E-value=0.44 Score=28.89 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH 67 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~ 67 (76)
.+++.|.+.|+ |.++. ++|+++-+ ++||.|.++.|.
T Consensus 29 ~~~~~l~V~nL--p~~~t---~~~L~~~F-~~~G~i~~v~i~ 64 (108)
T 2jvo_A 29 LSNTRLFVRPF--PLDVQ---ESELNEIF-GPFGPMKEVKIL 64 (108)
T ss_dssp CSCSEEEECSS--CTTCC---HHHHHHHH-TTTSCCCEEEEE
T ss_pred CCCCEEEEECC--CCCCC---HHHHHHHH-HhcCCEEEEEEE
Confidence 56788999998 33333 46789999 699999999986
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.47 E-value=0.71 Score=26.99 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=29.7
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+-. ++. ++|+++-+ ++||.|.+|.|...
T Consensus 13 ~~~~~l~V~nlp~--~~t---~~~l~~~F-~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDD--GID---DERLRKAF-SPFGTITSAKVMME 50 (103)
T ss_dssp SSCCCEEEECCCT--TCC---HHHHHHTT-TTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCEEEEEEEcC
Confidence 4678899999832 232 47789999 69999999999875
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.43 E-value=0.51 Score=29.13 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..|+++|.+.|+-. +++ -++|+++-+ ++||.|.+|.|.+.
T Consensus 12 ~~p~~~l~V~nLp~-~~~---te~dL~~lF-~~fG~V~~v~i~~~ 51 (102)
T 1x4d_A 12 VETRRVVHIMDFQR-GKN---LRYQLLQLV-EPFGVISNHLILNK 51 (102)
T ss_dssp CCCCCEEEEESCCC-SSS---HHHHHHTTT-GGGSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC-CcC---CHHHHHHHH-HhcCCEEEEEEEcC
Confidence 35789999999753 122 356788999 69999999999764
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=90.31 E-value=0.89 Score=28.66 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=31.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|.+|.|+....
T Consensus 37 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLS--FYT---TEEQIYELF-SKSGDIKKIIMGLDKM 76 (156)
T ss_dssp TTCCEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEecCC
Confidence 467899999984 222 257789999 6999999999987654
No 66
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=90.15 E-value=0.9 Score=28.11 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=30.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++|+++-| ++||.|.++.|+..+
T Consensus 92 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 92 PGAHKLFIGGLPN--YL---NDDQVKELL-TSFGPLKAFNLVKDS 130 (172)
T ss_dssp TTTTCEEEECCCT--TC---CHHHHHHHH-HTTSCEEEEEEEECT
T ss_pred CCCCEEEEEcCCC--cC---CHHHHHHHH-HhcCCceEEEEEecC
Confidence 3467888898844 22 257899999 699999999998874
No 67
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=90.13 E-value=1 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++++++.+ ++||.|.++.|+...
T Consensus 87 ~~~~~l~v~nl~~--~~---t~~~l~~~f-~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 87 IKDTNLYVTNLPR--TI---TDDQLDTIF-GKYGSIVQKNILRDK 125 (168)
T ss_dssp TTTCEEEEESCCT--TC---CHHHHHHHH-TSSSCEEEEEEEECT
T ss_pred CCCCCEEEeCCCC--CC---CHHHHHHhh-hcCCcEEEEEEEEcC
Confidence 4567889999853 22 247899999 699999999998765
No 68
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.10 E-value=0.55 Score=31.42 Aligned_cols=45 Identities=18% Similarity=0.006 Sum_probs=33.3
Q ss_pred ccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 21 EPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 21 ~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
++..+++++.|.+.|+=. .++. ++++++-+ ++||.|.+|.|....
T Consensus 27 p~~~~~~~~~l~V~nLp~-~~~t---e~~L~~~F-~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNP-ERVT---PQSLFILF-GVYGDVQRVKILFNK 71 (229)
T ss_dssp GGGGCCCCSEEEEESCCT-TTCC---HHHHHHHH-HHHTCEEEEEECCTT
T ss_pred CCCCCCCCCEEEEeCCCc-ccCC---HHHHHHHH-HhCCCeEEEEEEECC
Confidence 344457789999999842 1333 37888999 699999999998754
No 69
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=90.08 E-value=0.43 Score=32.58 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=31.6
Q ss_pred ccccceeeeeccCCCCc-cccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGE-VDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e-~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .+ +. ++++++.| ++||.|.+|.|+..+.
T Consensus 207 ~~~~~~l~v~nlp--~~~~t---~~~l~~~F-~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 207 TLEGREIMIRNLS--TELLD---ENLLRESF-EGFGSIEKINIPAGQK 248 (292)
T ss_dssp CCTTTEEEEEEEC--TTTCC---HHHHHHHH-GGGSCEEEEECCSCCC
T ss_pred CCCCceEEEECCC--cccCC---HHHHHHHH-hccCCeeEEEEEecCC
Confidence 3567899999973 22 32 47899999 6999999999988653
No 70
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=90.03 E-value=0.78 Score=28.25 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=29.6
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
+++.|.+.|+- .++. ++++++-+ ++||.|.++.|...+.
T Consensus 2 ~~~~l~v~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 40 (167)
T 2cjk_A 2 ESCKMFIGGLN--WDTT---EDNLREYF-GKYGTVTDLKIMKDPA 40 (167)
T ss_dssp GGGEEEECSCC--TTCC---HHHHHHHH-TTTCCEEEEECCCCTT
T ss_pred CCcEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEEECCC
Confidence 56788888873 3332 56789999 6999999999987643
No 71
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.86 E-value=0.44 Score=28.94 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=29.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..++.|.+.|+- .++ -++|+++-+ ++||.|.+|.|+..
T Consensus 8 ~~~~~l~V~nLp--~~~---te~~L~~~F-~~~G~i~~v~i~~~ 45 (111)
T 1whx_A 8 RSKTVILAKNLP--AGT---LAAEIQETF-SRFGSLGRVLLPEG 45 (111)
T ss_dssp EEEEEEEEESCC--TTC---CHHHHHHHH-HTTSCEEEEECCSS
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEEEEEEeCC
Confidence 456789999984 222 467899999 69999999998753
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=89.84 E-value=0.59 Score=28.42 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=30.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|....
T Consensus 32 ~~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~v~~v~i~~~~ 71 (124)
T 2kt5_A 32 VETGAKLLVSNLD--FGVS---DADIQELF-AEFGTLKKAAVDYDR 71 (124)
T ss_dssp CSSCEEEEEESCC--SSCC---HHHHHHHH-HTTSCCSEEEEECCS
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEECC
Confidence 3566789999983 3333 46789999 699999999998764
No 73
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=89.83 E-value=0.5 Score=31.79 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=29.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
|.++++|.+.|+= |..+.+ +++++-+ ++||.|.+|.|...
T Consensus 1 g~~~~~l~V~nL~-~~~~~~---~~L~~~F-~~~G~v~~v~i~~~ 40 (205)
T 3tyt_A 1 GADSPVLMVYGLD-QSKMNC---DRVFNVF-CLYGNVEKVKFMKS 40 (205)
T ss_dssp -CCCSEEEEECCC-TTTCCH---HHHHHHH-TTTSCEEEEEECTT
T ss_pred CCCCCEEEEeCCC-cccCCH---HHHHHHH-HhcCCeEEEEEecC
Confidence 4578899999974 233433 4788899 69999999999763
No 74
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=89.82 E-value=0.44 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=28.5
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.-|.+.|+ |.++. ++|+++-+ ++||.|.++.|++...
T Consensus 20 t~lfV~nL--p~~~t---e~~L~~~F-~~~G~I~~v~i~~d~~ 56 (99)
T 4fxv_A 20 TNLIVNYL--PQNMT---QDELRSLF-SSIGEVESAKLIRDKV 56 (99)
T ss_dssp SEEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred CEEEEeCC--CCCCC---HHHHHHHH-HhcCCEEEeEeeecCC
Confidence 44888888 44444 46889999 6999999999987654
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.77 E-value=0.62 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=30.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE-EEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV-RVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~-~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|. ++.|+...
T Consensus 7 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 7 GMAASLWMGDLE--PYMD---ENFISRAF-ATMGETVMSVKIIRNR 46 (99)
T ss_dssp SSSSEEEECSCC--TTCC---HHHHHHHH-HHTTCCCCEEEEEECS
T ss_pred CCccEEEEeCCC--CCCC---HHHHHHHH-HHhCCcceEEEEeecC
Confidence 567889999983 2333 47789999 6999999 99998764
No 76
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=89.77 E-value=0.96 Score=28.57 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=31.5
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+= .++. ++|+++-+ ++||.|.+|.|...+.
T Consensus 10 ~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~ 50 (196)
T 1l3k_A 10 PEQLRKLFIGGLS--FETT---DESLRSHF-EQWGTLTDCVVMRDPN 50 (196)
T ss_dssp CGGGGEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEEEcCC
Confidence 3567889999983 3343 46788999 6999999999987654
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=89.55 E-value=0.46 Score=29.30 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=30.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|.....
T Consensus 40 ~~~~~l~V~nLp--~~~~---~~~l~~~F-~~~G~i~~v~i~~~~~ 79 (139)
T 1u6f_A 40 DVLRNLMVNYIP--TTVD---EVQLRQLF-ERYGPIESVKIVCDRE 79 (139)
T ss_dssp TTTSEEEEESCS--TTCC---HHHHHHHH-HHHSCEEEEEEEEETT
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEEcCC
Confidence 456789999983 3333 46789999 6999999999986543
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.51 E-value=0.55 Score=26.20 Aligned_cols=37 Identities=5% Similarity=0.043 Sum_probs=26.1
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.-|.+.|+ |.++. ++|+++-+ ++||.|.++.|+..+.
T Consensus 2 ~~l~V~nl--p~~~t---~~~l~~~f-~~~G~i~~~~i~~~~~ 38 (83)
T 3md1_A 2 FNLFVGDL--NVNVD---DETLRNAF-KDFPSYLSGHVMWDMQ 38 (83)
T ss_dssp EEEEEECC--CTTCC---HHHHHHHH-TTSTTEEEEEEEECTT
T ss_pred eEEEEeCC--CCCCC---HHHHHHHH-HhcCCeeEEEEEEcCC
Confidence 34556665 22232 47889999 6999999999987643
No 79
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=89.50 E-value=0.69 Score=30.93 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=29.5
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~ 68 (76)
..+++.|.+.|+-. ++. ++++++.+ ++|| .|.++.|..
T Consensus 148 ~~~~~~l~V~nlp~--~~t---~~~l~~~f-~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 148 FPPSATLHLSNIPP--SVS---EEDLKVLF-SSNGGVVKGFKFFQ 186 (229)
T ss_dssp CCSCSEEEEECCCT--TCC---HHHHHHHH-HTTSCCEEEEEECS
T ss_pred CCCCCEEEEeCCCc--cCC---HHHHHHHH-HHcCCCeeEEEEEE
Confidence 35678999999832 332 57899999 6999 999999943
No 80
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.41 E-value=1.3 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.336 Sum_probs=29.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+-.. + -++++++-+ ++||.|.++.|.+.
T Consensus 10 ~~~~~l~V~~l~~~--~---t~~~l~~~f-~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 10 KTITTLYVGGLGDT--I---TETDLRNHF-YQFGEIRTITVVQR 47 (85)
T ss_dssp SSCCCEEEECCTTT--S---CHHHHHHHH-HTTSCEEEEEEEGG
T ss_pred CCccEEEEcCCCCC--C---CHHHHHHHH-HhCCCEeEEEEECC
Confidence 56788888988532 2 347789999 69999999999863
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.40 E-value=0.71 Score=26.97 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=29.9
Q ss_pred cceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 28 CNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 28 s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+.|.+.|+- .++ +++|++.+++-+ ++||.|.+|.|+....
T Consensus 9 ~~~l~V~nL~--~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~ 50 (96)
T 2dgx_A 9 GADVQVSNID--YRLSRKELQQLLQEAF-ARHGKVKSVELSPHTD 50 (96)
T ss_dssp CEEEEEESCC--TTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCS
T ss_pred CCEEEEECCC--CCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCC
Confidence 4567788873 333 345666777999 6999999999986543
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.38 E-value=0.93 Score=26.87 Aligned_cols=40 Identities=25% Similarity=0.091 Sum_probs=31.0
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+-. ++ -++|+++-+ ++||.|.+|.|+...
T Consensus 12 ~~~~~~l~V~nlp~--~~---~~~~l~~~f-~~~G~i~~~~i~~~~ 51 (114)
T 2do0_A 12 GRLGSTVFVANLDY--KV---GWKKLKEVF-SMAGVVVRADILEDK 51 (114)
T ss_dssp CCCCSCEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEEECT
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence 35678899999842 23 347789999 699999999998764
No 83
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=89.30 E-value=0.66 Score=28.54 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=29.1
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+++.|.+.|+= .++. ++|+++-+ ++||.|.++.+....
T Consensus 2 ~~~~l~v~nlp--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~ 39 (168)
T 1b7f_A 2 SNTNLIVNYLP--QDMT---DRELYALF-RAIGPINTCRIMRDY 39 (168)
T ss_dssp CCSEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCEET
T ss_pred CccEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEEeC
Confidence 56788888873 3333 46789999 699999999998754
No 84
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=89.10 E-value=0.31 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=26.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.++..|.+.|+=. ++ -++++++-+ ++||.|.++.|+..
T Consensus 9 ~~~~~l~V~~Lp~--~~---te~~L~~~F-~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 9 HHGSKVFVGRCTE--DM---TAEELQQFF-CQYGEVVDVFIPKP 46 (89)
T ss_dssp --CCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEECCSS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-hccCCEEEEEEeeC
Confidence 4556777777532 22 246789999 69999999999863
No 85
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=89.08 E-value=0.52 Score=27.77 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=28.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.+|.|++
T Consensus 9 ~~~~~l~V~nl~~--~~---t~~~l~~~F-~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 9 AKVKVLFVRNLAN--TV---TEEILEKAF-SQFGKLERVKKLK 45 (103)
T ss_dssp CCCCCEEEECCCT--TC---CHHHHHHHH-HHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEC
Confidence 4578899999842 23 247788999 6999999999874
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=89.04 E-value=1 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=29.7
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.++.|...
T Consensus 6 ~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPF--DF---TWKMLKDKF-NECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCT--TC---CHHHHHHHH-HTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEcc
Confidence 5678888999842 22 357889999 69999999999874
No 87
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=88.99 E-value=1.6 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=29.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++++++.+ ++||.|.++.|+...
T Consensus 86 ~~~~~l~v~nl~~--~~---t~~~l~~~f-~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 86 IRDANLYVSGLPK--TM---TQKELEQLF-SQYGRIITSRILVDQ 124 (167)
T ss_dssp GTTCEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred CCCCcEEECCCCC--cC---CHHHHHHHH-HhcCCEeEEEEEecC
Confidence 4557788888743 22 257899999 699999999998764
No 88
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.88 E-value=1 Score=26.14 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=29.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.++.|.+.
T Consensus 13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 13 TQRSRLFVGNLP--PDIT---EEEMRKLF-EKYGKAGEVFIHKD 50 (99)
T ss_dssp CCTTEEEEESCC--TTCC---HHHHHHHT-STTCCCSEEEEETT
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-hhcCCeEEEEEecC
Confidence 567889999983 3333 46789999 69999999999864
No 89
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=88.67 E-value=0.64 Score=26.14 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=28.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.++.|+...
T Consensus 4 ~~~~~l~v~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 42 (87)
T 3bs9_A 4 GSHFHVFVGDLSP--EI---TTAAIAAAF-APFGRISDARVVKDM 42 (87)
T ss_dssp --CEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred CCceEEEEeCCCC--CC---CHHHHHHHH-HhcCCEeEEEEEecC
Confidence 3567788888732 22 357789999 699999999998764
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=88.57 E-value=1.7 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=31.3
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
...+++.|.+.|+-. ++ -++++++-+ ++||.|.++.|+...
T Consensus 22 ~~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 62 (110)
T 1oo0_B 22 RSVEGWILFVTSIHE--EA---QEDEIQEKF-CDYGEIKNIHLNLDR 62 (110)
T ss_dssp CBTTBEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEECCBCT
T ss_pred CCCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEecC
Confidence 346678899999843 22 246789999 699999999998654
No 91
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=88.57 E-value=0.68 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.388 Sum_probs=32.2
Q ss_pred cccceeeeeccCCCCccc-cchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVD-SDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~d-ddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+- .++. ++|+..+.+-+ ++||.|.+|.|.+
T Consensus 7 ~~~~~l~V~nlp--~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~ 47 (282)
T 3pgw_A 7 RPNHTIYINNLN--EKIKKDELKKSLYAIF-SQFGQILDILVSR 47 (282)
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHHH-hccCCeEEEEEcC
Confidence 568999999983 4443 56777788999 6999999999987
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.57 E-value=0.56 Score=28.45 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.1
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
+++.|.+.|+-. ++ -++++++-+ ++||.|.+|.|++...
T Consensus 10 ~~~~lfV~~Lp~--~~---te~~L~~~F-~~~G~v~~v~i~~d~~ 48 (103)
T 1s79_A 10 KNRSVYIKGFPT--DA---TLDDIKEWL-EDKGQVLNIQMRRTLH 48 (103)
T ss_dssp GGGCEEEECCCT--TC---CHHHHHHHH-HTSSCEEEEEEECCCT
T ss_pred CCCEEEEECCCC--CC---CHHHHHHHH-hhcCCEEEEEEEECCC
Confidence 457788888732 22 357789999 6999999999998654
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=88.53 E-value=1.3 Score=26.77 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=31.4
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
...+++.|.+.|+- .++ -++++++-+ ++||.|.+|.|+...
T Consensus 18 ~~~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 58 (126)
T 3ex7_B 18 RSVEGWILFVTGVH--EEA---TEEDIHDKF-AEYGEIKNIHLNLDR 58 (126)
T ss_dssp CCSSSEEEEEESCC--TTC---CHHHHHHHH-HTTSCEEEEECCBCT
T ss_pred CCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEecC
Confidence 34567899999984 223 356788999 699999999998764
No 94
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.51 E-value=1.3 Score=25.79 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.+|.|+....
T Consensus 11 ~~~~~l~V~nLp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~~ 50 (103)
T 2dnm_A 11 DGMITLKVDNLTY--RT---SPDSLRRVF-EKYGRVGDVYIPREPH 50 (103)
T ss_dssp SCCCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEECCBCSS
T ss_pred CCCeEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEeCCC
Confidence 5578899999842 22 346789999 6999999999987643
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.48 E-value=0.57 Score=28.16 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=30.9
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
-..+++.|.+.|+= .++. ++|+++-+ ++||.|.++.|....
T Consensus 25 ~~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~ 65 (109)
T 2err_A 25 NKSQPKRLHVSNIP--FRFR---DPDLRQMF-GQFGKILDVEIIFNE 65 (109)
T ss_dssp CTTCCCEEEEESCC--TTCC---HHHHHHHG-GGTCCCSCEEECCBT
T ss_pred CCCCCCEEEEECCC--CcCC---HHHHHHHH-HhcCCEEEEEEEECC
Confidence 34567889999983 2332 46789999 699999999998654
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=88.44 E-value=1.1 Score=28.19 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=32.8
Q ss_pred CccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 20 LEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 20 l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
-++.-..+++.|.+.|+- .++ -++|+++-+ ++||.|.+|.|+...
T Consensus 39 ~~~~~~~~~~~l~V~nLp--~~~---te~~L~~~F-~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLT--YRT---SPDTLRRVF-EKYGRVGDVYIPRDR 83 (135)
T ss_dssp CSCSSGGGCCCEEEECCC--SSC---HHHHHHHHH-GGGSCCSEEECCCCS
T ss_pred CCCCCCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEEEEEEEecC
Confidence 333344567889999983 233 357789999 699999999998754
No 97
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=88.44 E-value=0.22 Score=29.34 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=28.7
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEecCCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHELPT 71 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~~~~ 71 (76)
|++|.++|+ |.++. ++|+++-+ ++|| .|.+|.|.+...
T Consensus 1 S~~i~v~nL--p~~~t---e~~l~~~F-~~~G~~v~~v~i~~d~~ 39 (91)
T 2lxi_A 1 SNIVMLRML--PQAAT---EDDIRGQL-QSHGVQAREVRLMRNKS 39 (91)
T ss_dssp CCEEEEETC--CSSCC---HHHHHHHH-HHHTCCCSBCCSSSCSS
T ss_pred CCEEEEeCC--CCCCC---HHHHHHHH-HHhCCEeEEEEEEecCC
Confidence 678888887 33333 46889999 6999 899999877543
No 98
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.40 E-value=0.65 Score=26.66 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=29.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEE-EEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV-IIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v-~I~~~~ 70 (76)
.+++.|.+.|+-. ++. ++|+++-+ ++||.|.++ .|+..+
T Consensus 3 ~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~G~i~~~~~i~~~~ 42 (96)
T 1x5t_A 3 SGSSGIFIGNLDP--EID---EKLLYDTF-SAFGVILQTPKIMRDP 42 (96)
T ss_dssp SCCCEEEEECCCT--TCC---HHHHHHHH-HTTSCBSSCCEECCCT
T ss_pred CCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeeEEEEEEEcC
Confidence 4678888888732 232 57889999 699999999 887753
No 99
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=88.37 E-value=1.7 Score=25.36 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.6
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
...+++.|.+.|+-. ++ -++++++-+ ++||.|.+|.|.....
T Consensus 19 ~~~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~~ 60 (106)
T 1p27_B 19 RSVEGWILFVTGVHE--EA---TEEDIHDKF-AEYGEIKNIHLNLDRR 60 (106)
T ss_dssp CBTTBEEEEEECCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCCCEEEEeCCCC--CC---CHHHHHHHH-hccCCeEEEEEEecCC
Confidence 345678899999743 22 246789999 6999999999987643
No 100
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.24 E-value=1 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=30.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++. ++|+++-+ ++|| |.+|.|+....
T Consensus 13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G-i~~v~i~~~~~ 51 (104)
T 1wi8_A 13 SPPYTAFLGNLP--YDVT---EESIKEFF-RGLN-ISAVRLPREPS 51 (104)
T ss_dssp SSCEEEEEESCC--SSCC---HHHHHHHT-TTSC-EEEEECCBCSS
T ss_pred CCCCEEEEeCCC--CcCC---HHHHHHHH-HHCC-ceEEEEecCCC
Confidence 567889999983 3332 46789999 6999 99999987754
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.09 E-value=0.36 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|+++-+ ++||.|.++.|+..+.
T Consensus 14 ~~~l~~~F-~~~G~v~~v~i~~~~~ 37 (77)
T 1uaw_A 14 QEGLREYF-GQFGEVKECLVMRDPL 37 (77)
T ss_dssp SHHHHHHH-TTTSCCCCEEEECCCC
T ss_pred HHHHHHHH-HhcCCEEEEEEecCCC
Confidence 46789999 6999999999988653
No 102
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.02 E-value=1.4 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+-. ++ -++++++-+ ++||.|.+|.|+...
T Consensus 12 ~~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~ 51 (103)
T 2cq0_A 12 ADDNATIRVTNLSE--DT---RETDLQELF-RPFGSISRIYLAKDK 51 (103)
T ss_dssp CSSSEEEEEESCCT--TC---CHHHHHTTS-TTTCCEEEEEEEECS
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeEEEEEeecC
Confidence 45678899999842 22 346789999 699999999998764
No 103
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.87 E-value=0.49 Score=30.15 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=27.6
Q ss_pred cccceeeeec--cCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGEN--MVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~N--Mv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.||+.|.++| +- .++ -++++++.. ++||.|.+|.|+.
T Consensus 23 ~pt~~L~V~Ng~L~--~~~---te~~L~~~F-~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLG--NGV---SRNQLLPVL-EKCGLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGG--GTC---CHHHHHHHH-HHHSCEEEEECCT
T ss_pred CCCCEEEEECCCCC--CCC---CHHHHHHHH-HhcCCeEEEEEeC
Confidence 5788899966 42 122 237889999 6999999999874
No 104
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.75 E-value=1.3 Score=27.84 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred cccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 42 VDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 42 ~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++++|..++.+.. +.||.|..+.|...
T Consensus 24 fd~~l~~~L~~~F-~~~G~Vi~vr~~~d 50 (91)
T 2dnr_A 24 FDDALIDELLQQF-ASFGEVILIRFVED 50 (91)
T ss_dssp CCHHHHHHHHHHH-HTTCCEEEEEECSS
T ss_pred CCHHHHHHHHHHH-HhCCCeEEEEEecC
Confidence 6889999999999 69999999998753
No 105
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.43 E-value=0.88 Score=26.45 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.2
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .++ -++|+++-+ ++||.|.++.|+..+.
T Consensus 9 ~~~~~~l~v~nLp--~~~---t~~~l~~~f-~~~G~i~~v~i~~~~~ 49 (102)
T 1x5s_A 9 ASDEGKLFVGGLS--FDT---NEQSLEQVF-SKYGQISEVVVVKDRE 49 (102)
T ss_dssp CCCCSEEEEESCC--TTC---CHHHHHHHH-HHHSCCCEEEECCCSS
T ss_pred CCCCCEEEEECCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence 3567889999983 223 346789999 6999999999987643
No 106
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=87.41 E-value=0.85 Score=25.71 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=28.9
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.++.|.+.|+ |.++ -++++++-+ ++||.|.++.|+..+
T Consensus 5 ~~~~l~V~nl--p~~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 42 (89)
T 3ucg_A 5 DARSIYVGNV--DYGA---TAEELEAHF-HGCGSVNRVTILCDK 42 (89)
T ss_dssp HHTEEEEESC--CTTC---CHHHHHHHH-GGGCCEEEEEEEESC
T ss_pred cCCEEEEeCC--CCCC---CHHHHHHHH-HhCCCEEEEEEEecC
Confidence 4577888887 3333 247789999 699999999998764
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=87.26 E-value=1.3 Score=27.61 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=31.0
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. ++. ++|+++-+ ++||.|.+|.|.....
T Consensus 43 ~~~~~~l~V~nLp~--~~t---e~~L~~~F-~~~G~I~~v~i~~d~~ 83 (129)
T 2kxn_B 43 PDPNCCLGVFGLSL--YTT---ERDLREVF-SKYGPIADVSIVYDQQ 83 (129)
T ss_dssp CCCSSCBCEETCTT--SCC---HHHHHHHH-TTTSCEEEEEEECCSS
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 36678899999732 232 45789999 6999999999987643
No 108
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=87.24 E-value=1.1 Score=27.70 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=31.3
Q ss_pred cccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE--EEEecCC
Q psy18100 22 PEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR--VIIHELP 70 (76)
Q Consensus 22 ~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~--v~I~~~~ 70 (76)
+.-..+++.|.+.|+= .++. ++++++-+ ++||.|.. |.|....
T Consensus 17 ~~~~~~~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 17 PSSENANDTIILRNLN--PHST---MDSILGAL-APYAVLSSSNVRVIKDK 61 (131)
T ss_dssp CCCSCCCCEEEECSCC--TTCC---SHHHHHHH-GGGCCCCTTTEECCBCS
T ss_pred CCCCCCCCEEEEeCCC--CCCC---HHHHHHHH-HHhCCcceeeEEEEEcC
Confidence 3344677889999973 2332 47788999 69999976 8888765
No 109
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.08 E-value=1.9 Score=26.35 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=30.1
Q ss_pred cccceeeeeccCCCCcc-c-cchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEV-D-SDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~-d-ddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
..++.|.|.--+..++. . +--++++++-+ ++||.|.+|.|+.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F-~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLL-QKYGEVLNLVLSS 51 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHH-HTTSCEEEEEEES
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHH-HhcCCEEEEEEcc
Confidence 44667777776655422 1 22578899999 6999999999974
No 110
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=87.04 E-value=0.68 Score=31.12 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcce--EEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEV--VRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V--~~v~I~~~~ 70 (76)
+|++.|.+.|+ |.++. ++++++-+ ++||.| .++.++...
T Consensus 121 ~p~~~l~v~NL--p~~~t---~~~L~~~F-~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 121 HPSNVLHFFNA--PLEVT---EENFFEIC-DELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCSEEEEEEE--CTTCC---HHHHHHHH-HHHTCCCCSEEEECSCC
T ss_pred CCcceEEEeCC--CCCCC---HHHHHHHH-HhcCCcceEEEEEEcCC
Confidence 57889999998 33443 46789999 699999 899988754
No 111
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.99 E-value=0.48 Score=27.66 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=29.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++|+++-+ ++||.|.++.|....
T Consensus 6 ~~~~~l~V~nlp~--~~---~~~~l~~~f-~~~G~i~~~~i~~~~ 44 (104)
T 1p1t_A 6 RSLRSVFVGNIPY--EA---TEEQLKDIF-SEVGPVVSFRLVYDR 44 (104)
T ss_dssp HHHSCEEEESCCT--TS---CHHHHHHHH-HTTSCCSEEEEEEET
T ss_pred CCccEEEEeCCCC--cC---CHHHHHHHH-HhcCCeeEEEEEeCC
Confidence 5578888998742 22 347789999 699999999998654
No 112
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=86.96 E-value=0.8 Score=26.94 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=27.2
Q ss_pred ccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 23 EVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 23 ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
....+++.|.+.|+- .++. ++|+++-+ ++|| |.+|.|....
T Consensus 14 ~~~~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 14 LPKSPPYTAFLGNLP--YDVT---EESIKEFF-RGLN-ISAVRLPREP 54 (100)
T ss_dssp ------CEEEESCCS--SCCS---SSHHHHHS-CSSC-EEEEECSCCT
T ss_pred CCCCCCcEEEEeCCC--CCCC---HHHHHHHH-HhcC-CeEEEEEecC
Confidence 344667889999983 3333 35688999 6999 9999998765
No 113
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.90 E-value=3.4 Score=24.55 Aligned_cols=41 Identities=2% Similarity=0.117 Sum_probs=31.2
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. ++ -++|+++-+ ++||.|.+|.|.....
T Consensus 14 ~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 54 (116)
T 2cqd_A 14 DTTFTKIFVGGLPY--HT---TDASLRKYF-EGFGDIEEAVVITDRQ 54 (116)
T ss_dssp SCSSSEEEEECCCS--SC---CHHHHHHHH-HTTSCEEEEEESCCSS
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeeEEEEEEcCC
Confidence 35678899999832 23 246789999 6999999999987643
No 114
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.73 E-value=2.8 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=31.1
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. ++ -++++++-+ ++||.|.+|.|+....
T Consensus 12 ~~~~~~l~V~nLp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 52 (111)
T 1x4h_A 12 VTEGKTVFIRNLSF--DS---EEEALGEVL-QQFGDLKYVRVVLHPD 52 (111)
T ss_dssp CCCCCCEEEESCCT--TC---CHHHHHHHH-HTTSCEEEEECCBCSS
T ss_pred CCCCCEEEEECCCC--CC---CHHHHHHHH-HhcCCeEEEEEEecCC
Confidence 35678899999743 22 356789999 6999999999987643
No 115
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.48 E-value=2.2 Score=24.80 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.3
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..+++.|.+.|+-. ++ -++++++-+ ++||.|.+|.|+..
T Consensus 12 ~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 12 KQTTSKILVRNIPF--QA---NQREIRELF-STFGELKTVRLPKK 50 (107)
T ss_dssp SSCCCCEEEESCCT--TC---CHHHHHHHH-HTTSCEEEEECCCC
T ss_pred CCCCCEEEEeCCCC--cC---CHHHHHHHH-HccCCeEEEEEecC
Confidence 35678899999832 23 246789999 69999999999876
No 116
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.43 E-value=0.87 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=30.7
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|.+.
T Consensus 12 ~~~~~~~LfV~nLp--~~vt---e~dL~~lF-~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 12 SGVPSRVIHIRKLP--IDVT---EGEVISLG-LPFGKVTNLLMLKG 51 (105)
T ss_dssp CCCCCCEEEECSCC--TTSC---HHHHHHHH-HHHCCEEEEEEETT
T ss_pred CCCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEcC
Confidence 45678899999973 3333 45678999 69999999999864
No 117
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=86.24 E-value=1.8 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=29.8
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..+++.|.+.|+- .++. ++++++-+ ++||.|.++.|+..
T Consensus 70 ~~~~~~l~V~nl~--~~~t---~~~l~~~F-~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLG--NNGN---KTELERAF-GYYGPLRSVWVARN 108 (150)
T ss_dssp STTSCEEEEESCC--SCCS---CHHHHHHH-HHHSCEEEEEECSS
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhhCCEEEEEEeeC
Confidence 4567889999983 3332 35788999 69999999999875
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=86.04 E-value=0.45 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|+++-+ ++||.|.++.|+..+.
T Consensus 13 ~~~l~~~F-~~~G~i~~v~i~~~~~ 36 (75)
T 2mss_A 13 VEDVKHYF-EQFGKVDDAMLMFDKT 36 (75)
T ss_dssp HHHHHHHH-HTTSCCSEECCCBCSS
T ss_pred HHHHHHHH-HhcCCEEEEEEEecCC
Confidence 57789999 6999999999987653
No 119
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.88 E-value=1.2 Score=25.86 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=30.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|.+|.|+..+.
T Consensus 8 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~ 47 (99)
T 2dgs_A 8 SKSNKIFVGGIP--HNC---GETELREYF-KKFGVVTEVVMIYDAE 47 (99)
T ss_dssp SSCCEEEEESCC--SSC---CHHHHHHHH-SSSSCEEEEEECCCTT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence 567889999973 233 346788999 6999999999987643
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=85.76 E-value=2.7 Score=25.50 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=28.5
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+++.|.+.|+-. ++. ++|+++-+ ++||.|.++.+....
T Consensus 1 s~~~l~v~nlp~--~~~---~~~l~~~f-~~~G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQ--NMT---QEEFRSLF-GSIGEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCT--TCC---HHHHHHHH-HTTSCEEEEEEEECT
T ss_pred CcceEEEcCCCC--CCC---HHHHHHHH-HhcCCeEEEEEEeCC
Confidence 356777888732 232 56788999 699999999998765
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=85.60 E-value=1.2 Score=26.83 Aligned_cols=42 Identities=10% Similarity=0.198 Sum_probs=28.7
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+.+++.|.+.|+= .++. ++|+++-+ ++||.|.+|.|.....
T Consensus 21 ~~~~~~~lfV~nLp--~~~t---e~~L~~~F-~~~G~i~~v~i~~~~~ 62 (109)
T 2rs2_A 21 MGSSGCKMFIGGLS--WQTT---QEGLREYF-GQFGEVKECLVMRDPL 62 (109)
T ss_dssp -----CCEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEECCCTT
T ss_pred cCCCCCEEEEeCCC--CCCC---HHHHHHHH-HccCCeEEEEEEECCC
Confidence 34567888899873 3332 46789999 6999999999987653
No 122
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=85.30 E-value=0.74 Score=27.92 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=27.2
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.-|.+.|+ |.++. ++|+++-+ ++||.|.+|.|....
T Consensus 6 ~~lfV~nL--p~~~t---e~~L~~~F-~~~G~v~~v~i~~d~ 41 (115)
T 4f25_A 6 GNIFIKNL--DKSID---NKALYDTF-SAFGNILSCKVVCDE 41 (115)
T ss_dssp CEEEEESC--CTTCC---HHHHHHHH-GGGSCEEEEEEEEET
T ss_pred CEEEECCC--CCCCC---HHHHHHHH-hccCCEEEEEEeecC
Confidence 44788887 33444 46889999 699999999998754
No 123
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=85.23 E-value=0.2 Score=31.69 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred eeeeeccccCCCCCCCCCcccc-------ccccceeeeecc
Q psy18100 3 ATILDLNMVGPGEVDSDLEPEV-------KEECNTKYGENM 36 (76)
Q Consensus 3 ~~~~~~NMv~p~evd~~l~~ev-------~~~s~vl~L~NM 36 (76)
++++|+||+.|.+.++++...+ |.=.+|.+.++-
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEK 61 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecC
Confidence 6899999999998887765544 333445555554
No 124
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.09 E-value=1.3 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|.+|.|+....
T Consensus 14 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~v~~v~i~~~~~ 53 (105)
T 2dh8_A 14 DEIGKLFVGGLD--WST---TQETLRSYF-SQYGEVVDCVIMKDKT 53 (105)
T ss_dssp SSSSEECCBSCC--TTC---CHHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEeeCCC
Confidence 566788888873 222 346788999 6999999999988643
No 125
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=85.08 E-value=1 Score=30.54 Aligned_cols=40 Identities=0% Similarity=-0.227 Sum_probs=30.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++ --++++++-+ ++||.|.++.|+..+
T Consensus 182 ~~~~~l~v~nlp~--~~--~~~~~l~~~f-~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 182 LHSRCLCVDRLPP--GF--NDVDALCRAL-SAVHSPTFCQLACGQ 221 (284)
T ss_dssp TSCSEEEEECCCT--TC--CCHHHHHHHT-CSSSCCSEEEEEECS
T ss_pred CCccEEEEecCCc--cc--CCHHHHHHHh-hCCCCeEEEEEEECC
Confidence 4567899999732 21 0257899999 699999999998764
No 126
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.69 E-value=1.3 Score=25.79 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=30.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+ |.++. ++|+++-+ ++||.|.+|.|+....
T Consensus 12 ~~~~~~l~v~nl--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 52 (103)
T 2cqg_A 12 VQKTSDLIVLGL--PWKTT---EQDLKEYF-STFGEVLMVQVKKDLK 52 (103)
T ss_dssp CCCCCCEEEESC--CSSCC---HHHHHHHH-GGGSCEEEEEEEECSS
T ss_pred cCCCCEEEEEcC--CCcCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 355678889996 33332 46789999 6999999999987643
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.04 E-value=3.3 Score=24.06 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=29.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+++.|.+.|+- .++ -++|+++-+ ++|| |.+|.|+....
T Consensus 13 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~g-i~~v~i~~~~~ 51 (103)
T 2dng_A 13 EPPYTAYVGNLP--FNT---VQGDIDAIF-KDLS-IRSVRLVRDKD 51 (103)
T ss_dssp SSCEEEEEESCC--TTC---CHHHHHHHT-TTSC-EEEEEEEECSS
T ss_pred CCCeEEEEeCCC--CCC---CHHHHHHHH-HhCC-ceEEEEeecCC
Confidence 567889999983 333 246789999 6998 99999987653
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=83.80 E-value=1.8 Score=25.09 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=28.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+-.. .+ -++|+++-+ ++||.|.++.|++
T Consensus 8 ~~~~~l~V~nlp~~-~~---t~~~l~~~F-~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 8 PPKSRLFIGNLPLK-NV---SKEDLFRIF-SPYGHIMQINIKN 45 (96)
T ss_dssp -CCEEEEEESSTTS-CC---CHHHHHHHH-TTTCCCCEEEEET
T ss_pred CCCCEEEEeCCCcc-cC---CHHHHHHHH-HhcCCEEEEEEeC
Confidence 56788888998421 23 247789999 6999999999863
No 129
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=83.39 E-value=2.5 Score=24.80 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=28.8
Q ss_pred cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100 24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH 67 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~ 67 (76)
..++++.|.+.|+=.. ++ -++++++-+ ++||.|.++.|.
T Consensus 18 ~~~~~~~l~V~nLp~~-~~---t~~~L~~~F-~~~G~v~~v~i~ 56 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLK-NV---SKEDLFRIF-SPYGHIMQINIK 56 (97)
T ss_dssp -CCTTCEEEEESCCSS-CC---CHHHHHHHH-GGGSCEEEEEEC
T ss_pred CCCCCCEEEEeCCCcc-cC---CHHHHHHHH-HhcCCEEEEEEe
Confidence 3467888999998421 22 246788999 699999999985
No 130
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.31 E-value=2.4 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE--------EEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV--------RVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~--------~v~I~~~~ 70 (76)
.+++.|.+.|+= .++. ++++++-+ ++||.|. +|.|+...
T Consensus 13 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~ 59 (113)
T 2cpe_A 13 SDNSAIYVQGLN--DSVT---LDDLADFF-KQCGVVKMNKRTGQPMIHIYLDK 59 (113)
T ss_dssp CCCCEEEEECCC--TTCC---HHHHHHHH-TTTSCBCBCSSSCCBSEECCBCT
T ss_pred CCCCEEEEcCCC--CCCC---HHHHHHHH-HhcCCEeEccccCccCEEEEEeC
Confidence 567889999983 3333 46789999 6999999 68888753
No 131
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=83.23 E-value=2.1 Score=29.14 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=30.3
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+- ..+. ++++++-+ ++||.|.++.|+...
T Consensus 93 a~~~~~l~v~nl~--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 93 ATHGAALTVKNLS--PVVS---NELLEQAF-SQFGPVEKAVVVVDD 132 (261)
T ss_dssp CCCSSEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEEET
T ss_pred cccCCcccccCCC--CCCC---HHHHHHHH-HhcCCeEEEEeeeCC
Confidence 3556788888883 3332 47899999 699999999998663
No 132
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=82.81 E-value=2 Score=30.49 Aligned_cols=41 Identities=17% Similarity=0.380 Sum_probs=31.1
Q ss_pred ccccceeeeeccCCCCccc------cchHHHHHHHHhhcCcceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEVD------SDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~d------ddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
..+++.|.+.|+-. +++ +..++++++.. ++||.|.+|.|..
T Consensus 131 ~~~~rtLfVgnL~~--~~~~~~~~~~~tEe~L~~~F-~~fG~I~~v~v~~ 177 (240)
T 3u1l_A 131 RKKNKTLYVGGIDG--ALNSKHLKPAQIESRIRFVF-SRLGDIDRIRYVE 177 (240)
T ss_dssp CCCCCEEEEECTTG--GGTTCCCCHHHHHHHHHHHH-HTTSCEEEEEEEG
T ss_pred ccCCceeecCCCCh--hhhcccccccCcHHHHHHHH-HccCCEEEEEEEC
Confidence 45678888888732 221 34689999999 6999999999875
No 133
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=82.58 E-value=1.6 Score=32.56 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=29.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
..||+.|.+.|.=-+-.+. ++++++.. ++||.|.+|.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~t---e~~L~~~F-~~~G~V~~v~~~~ 54 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVS---RNQLLPVL-EKCGLVDALLMPP 54 (345)
T ss_dssp SSCCSEEEEETCSGGGTCC---HHHHHHHH-HTTSCEEEEECCT
T ss_pred CCCCCEEEEEcCCCCCCCC---HHHHHHHH-HhcCCeEEEEEeC
Confidence 4789999999962222222 46778999 6999999998865
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.53 E-value=1.4 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=30.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+- .++. ++++++-+ ++||.|.+|.|+....
T Consensus 24 ~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~ 64 (116)
T 1x4b_A 24 KEQFRKLFIGGLS--FETT---EESLRNYY-EQWGKLTDCVVMRDPA 64 (116)
T ss_dssp HHHHTEEEEECCT--TCCC---HHHHHHHH-TSSCCCSEEEEECCTT
T ss_pred cCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEECCC
Confidence 3556788999983 3333 46788999 6999999999988643
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.50 E-value=1.4 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=28.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|..+.|+..
T Consensus 13 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 13 RSENRVVVSGLP--PSG---SWQDLKDHM-REAGDVCYADVYRD 50 (108)
T ss_dssp SCCCEEEEESCC--SSC---CHHHHHHHH-GGGSCEEEEEEETT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEeEEEEecC
Confidence 345678888874 223 257788999 69999999999763
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.36 E-value=2 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=30.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..++.|.+.|+= .++. ++|+++-+ ++||.|.+|.|.....
T Consensus 23 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 62 (114)
T 2cq4_A 23 RDARTVFCMQLA--ARIR---PRDLEDFF-SAVGKVRDVRIISDRN 62 (114)
T ss_dssp HHHTEEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEECCSCC
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhCCCEeEEEEEecCC
Confidence 446789999983 3332 46789999 6999999999986553
No 137
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=82.32 E-value=1.4 Score=26.49 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=33.0
Q ss_pred CCCCccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 17 DSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 17 d~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..++++. ..+++.|.+.|+- ..+ -++|+++-+ ++||.|.++.|+..+
T Consensus 16 ~~~~~~~-~~~~~~l~V~nLp--~~~---te~~l~~~F-~~~G~i~~v~i~~~~ 62 (108)
T 2jrs_A 16 ANNLQKG-SAGPMRLYVGSLH--FNI---TEDMLRGIF-EPFGRIESIQLMMDS 62 (108)
T ss_dssp CCSSCCS-CSSCEEEEEECCC--SSC---CHHHHHHHH-TTTSCEEEEEEEEET
T ss_pred ccccccC-CCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEEcC
Confidence 3344443 3556789999983 223 346789999 699999999998654
No 138
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=82.31 E-value=4 Score=25.98 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=29.7
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. .+ -++++++-+ ++||.|..|.|+...
T Consensus 70 ~~~~~l~V~nLp~--~~---t~~~L~~~F-~~~G~i~~v~i~~~~ 108 (165)
T 1rk8_A 70 VEGWILFVTSIHE--EA---QEDEIQEKF-CDYGEIKNIHLNLDR 108 (165)
T ss_dssp C-CEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHh-hcCCCEEEEEEEecC
Confidence 5567899999843 23 357789999 699999999998764
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=82.08 E-value=0.55 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|+++-+ ++||.|.++.++..+.
T Consensus 13 ~~~l~~~F-~~~G~i~~v~i~~~~~ 36 (75)
T 1iqt_A 13 EEKIREYF-GGFGEVESIELPMDNK 36 (75)
T ss_dssp HHHHHHHH-HHHSCCSEECCCCSCC
T ss_pred HHHHHHHH-HhcCCeEEEEEEecCC
Confidence 57789999 6999999999987543
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=81.86 E-value=2.1 Score=28.21 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=30.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+ |.++ -++|+++-+ ++||.|.+|.|+...
T Consensus 86 ~~~~~l~V~nL--p~~~---te~~L~~~F-~~~G~I~~v~i~~d~ 124 (177)
T 2f3j_A 86 ETGAKLLVSNL--DFGV---SDADIQELF-AEFGTLKKAAVDYDR 124 (177)
T ss_dssp TTCEEEEEECC--CSCC---CHHHHHHHH-HHTSCCSEEEECCCT
T ss_pred CCCCEEEEeCC--CCCC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence 55678999998 3333 256789999 699999999998764
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=81.67 E-value=1.6 Score=25.33 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=29.7
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+= .++ -++++++-+ ++||.|.++.|+...
T Consensus 7 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 7 IMPNTVFVGGID--VRM---DETEIRSFF-ARYGSVKEVKIITDR 45 (102)
T ss_dssp EEEEEEEEECCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCeEEEEEEECC
Confidence 456788888873 233 246788899 699999999998764
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=81.56 E-value=1.8 Score=26.25 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=25.9
Q ss_pred ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
|.|.+.|+- .++. ++|+++-+ ++||.|.++.|...++
T Consensus 1 R~l~V~nlp--~~~t---~~~l~~~f-~~~G~i~~v~i~~~~~ 37 (166)
T 3md3_A 1 RVLYVGNLD--KAIT---EDILKQYF-QVGGPIANIKIMIDKN 37 (166)
T ss_dssp CEEEEEEEE--TTCC---HHHHHHHH-GGGSCEEEEEEECCCC
T ss_pred CEEEECCCC--CcCC---HHHHHHHH-HhcCCeEEEEEEECCC
Confidence 345566652 2232 46788999 6999999999987653
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=81.42 E-value=1.7 Score=26.14 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=29.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.+|.|....
T Consensus 34 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~ 72 (124)
T 2jwn_A 34 IDKRSVYVGNVD--YGST---AQDLEAHF-SSCGSINRITILCDK 72 (124)
T ss_dssp HHHTEEEEEEEC--TTCC---HHHHHHHH-HTTSCEEEEEEEEEC
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEecC
Confidence 456789999983 2332 57789999 699999999998653
No 144
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=80.88 E-value=1.4 Score=27.25 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=27.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+ + --++|+++-+ ++||.|.+|.|..
T Consensus 37 ~~~~~lfVgnl----~---~te~~L~~~F-~~~G~I~~v~i~~ 71 (121)
T 2bz2_A 37 RKGNTLYVYGE----D---MTPTLLRGAF-SPFGNIIDLSMDP 71 (121)
T ss_dssp CCCCEEEEECS----S---CCHHHHHHHH-STTCCCSCEEEET
T ss_pred CCCCEEEEcCC----C---CCHHHHHHHH-HccCCEEEEEEeC
Confidence 56788899993 2 3368899999 6999999999874
No 145
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=80.70 E-value=2.7 Score=31.77 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=30.2
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+++.|.+.|+- .++. +++|++.+ ++||.|..|.|+...
T Consensus 99 ~~~~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~I~~v~i~~d~ 138 (437)
T 3pgw_S 99 GDAFKTLFVARVN--YDTT---ESKLRREF-EVYGPIKRIHMVYSK 138 (437)
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHH-HHcCCeeEEEeeccC
Confidence 3566889999973 2332 46789999 699999999997653
No 146
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.66 E-value=1.1 Score=25.55 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=28.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.++.|.+
T Consensus 7 ~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 7 GNTWKIFVGNVSA--AC---TSQELRSLF-ERRGRVIECDVVK 43 (90)
T ss_dssp CCSCCEEEESCCT--TC---CHHHHHHHH-HHHSCEEEEEECS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HcCCCEEEEEEEC
Confidence 4567888899843 33 346788999 6999999999874
No 147
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=80.41 E-value=3.8 Score=24.16 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=27.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH 67 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~ 67 (76)
.+++.|.+.|+-... +. ++|+++-+ ++||.|.+|.|+
T Consensus 25 ~~~~~l~V~nl~~~~-~t---~~~l~~~F-~~~G~v~~v~i~ 61 (110)
T 1wf1_A 25 SINSRVFIGNLNTAL-VK---KSDVETIF-SKYGRVAGCSVH 61 (110)
T ss_dssp TCSSEEEECSCCCSS-CC---HHHHHHHH-GGGSCCSEEEEE
T ss_pred CCCcEEEEeCCCccc-CC---HHHHHHHH-HhCCCeEEEEEe
Confidence 455788889873220 22 57789999 699999999884
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.71 E-value=1.6 Score=25.05 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=29.1
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEE-EEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV-IIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v-~I~~~~~ 71 (76)
..++.|.+.|+- .++. ++++++-+ ++||.|.++ .|+..+.
T Consensus 13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~v~~~~~i~~~~~ 53 (96)
T 2e44_A 13 QRIRKLQIRNIP--PHLQ---WEVLDSLL-VQYGVVESCEQVNTDSE 53 (96)
T ss_dssp CSCCCEEEEEEC--SSSC---HHHHHHHH-HHHSCEEEEEEECCSSS
T ss_pred CCCCEEEEEcCC--CCCC---HHHHHHHH-HhcCCeEEEEEeecCCC
Confidence 346788889983 3333 56789999 699999999 5776543
No 149
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=79.46 E-value=2.3 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.065 Sum_probs=27.9
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
++.|.+.|+-. .++. ++++++-+ ++||.|.+|.|....
T Consensus 3 ~~~l~v~nlp~-~~~~---~~~l~~~F-~~~G~i~~v~i~~~~ 40 (198)
T 1qm9_A 3 NSVLLVSNLNP-ERVT---PQSLFILF-GVYGDVQRVKILFNK 40 (198)
T ss_dssp CCEEEEECCCS-SSCC---HHHHHHHH-HTTCCCSEEECSTTC
T ss_pred CcEEEEeCCCc-ccCC---HHHHHHHH-HhcCCEEEEEEEeCC
Confidence 57788888732 1232 37888999 699999999998654
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=78.81 E-value=2 Score=26.40 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=28.6
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
.++.|.+.|+= .++. ++++++-+ ++||.|.++.|.....
T Consensus 2 ~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~ 40 (175)
T 3nmr_A 2 DAIKMFVGQVP--RTWS---EKDLRELF-EQYGAVYEINVLRDRS 40 (175)
T ss_dssp CCEEEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEEEEEECS
T ss_pred CceEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEEecCC
Confidence 35678888873 2333 46788999 6999999999987654
No 151
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=78.68 E-value=0.75 Score=28.14 Aligned_cols=22 Identities=59% Similarity=0.780 Sum_probs=15.3
Q ss_pred eeeeeccccCCCCCCCCCcccc
Q psy18100 3 ATILDLNMVGPGEVDSDLEPEV 24 (76)
Q Consensus 3 ~~~~~~NMv~p~evd~~l~~ev 24 (76)
++++|+||+.|.+.++++...+
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl 30 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVET 30 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHH
T ss_pred CEEEEEcCCChHHhhHHHHHHH
Confidence 6899999999988877665443
No 152
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.45 E-value=1.1 Score=26.88 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=28.1
Q ss_pred cccceeeeeccCCCCccccchHHHHH---HHHhhcCcceEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVK---DECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~---eEC~~KyG~V~~v~I~~~~~ 71 (76)
.+.+.|.+.|+- .++.+ +|++ +-+ ++||.|.++.|+....
T Consensus 13 ~~~~~l~V~nLp--~~~~~---~~l~~~~~~F-~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 13 VQKNLVFVVGLS--QRLAD---PEVLKRPEYF-GKFGKIHKVVINNSTS 55 (111)
T ss_dssp CCSSCEEEEEEC--TTTCC---HHHHHSTTTT-TTTSCEEEEEEECCSS
T ss_pred cCCCEEEEECCC--CCCCH---HHHHHHHHHh-hccCCEEEEEEecCCC
Confidence 445677888863 23332 4556 889 6999999999987654
No 153
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=78.45 E-value=1.5 Score=27.40 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=29.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|.++.|+...
T Consensus 68 ~~~~~l~v~nl~--~~~---~~~~l~~~F-~~~G~v~~~~i~~~~ 106 (158)
T 2kn4_A 68 EGMTSLKVDNLT--YRT---SPDTLRRVF-EKYGRVGDVYIPRDR 106 (158)
T ss_dssp CBCCEEEEESCC--TTC---CHHHHHHHH-HHHSCEEEEECCCCS
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEeecC
Confidence 456788888872 233 256789999 699999999998764
No 154
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=77.80 E-value=1 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCcceEEEEEecC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++|+++-+ ++||.|.++.|+..
T Consensus 14 ~~~l~~~F-~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 14 KGELERAF-SYYGPLRTVWIARN 35 (101)
T ss_dssp HHHHHHHH-HHHCCCSEEEEESS
T ss_pred HHHHHHHH-HhcCCeEEEEEeeC
Confidence 47789999 69999999999865
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=77.62 E-value=1.7 Score=26.67 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=29.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++ -++|+++.+ ++||.|.++.|+...
T Consensus 85 ~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 85 DKTGKIFVGGIGP--DV---RPKEFEEFF-SQWGTIIDAQLMLDK 123 (167)
T ss_dssp HHCEEEEEEEECT--TC---CHHHHHHHH-HTTSCCSEEECCCSS
T ss_pred cCCCeEEECCCCC--CC---CHHHHHHHH-HhCccEEEEEEEEcC
Confidence 4566788888732 22 247899999 699999999998764
No 156
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.28 E-value=2.4 Score=24.56 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=29.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhc-CcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTK-YGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~K-yG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++. ++|+++-+ ++ ||.|.+|.|+...
T Consensus 7 ~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~~G~v~~v~i~~~~ 46 (104)
T 2dhg_A 7 GPEYSLFVGDLTP--DVD---DGMLYEFF-VKVYPSCRGGKVVLDQ 46 (104)
T ss_dssp SCCCCEEEECCCT--TCC---HHHHHHHH-HHHCTTEEEEEEEECT
T ss_pred CCCcEEEEeCCCC--CCC---HHHHHHHH-HHhCCCeEEEEEEECC
Confidence 4567888888742 232 46789999 68 9999999998764
No 157
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=77.05 E-value=1.9 Score=26.19 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=29.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.+|.|....
T Consensus 5 ~~~~~l~V~nLp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 5 DHPGKLFIGGLNR--ET---NEKMLKAVF-GKHGPISEVLLIKDR 43 (116)
T ss_dssp CSCCEEEEECCTT--TC---CHHHHHHHH-HTSSCCSEEEEECST
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEECC
Confidence 4467788888732 22 356789999 699999999998765
No 158
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.79 E-value=2 Score=25.44 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=29.5
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++. ++++++-+ ++||.|.++.|+...
T Consensus 23 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 23 QDPTNLYISNLP--LSMD---EQELENML-KPFGQVISTRILRDS 61 (114)
T ss_dssp CCTTEEEEESCC--TTCC---HHHHHHTT-TTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEECC
Confidence 456778888873 2332 46789999 699999999998764
No 159
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=76.66 E-value=2 Score=24.55 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCc--ceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYG--EVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG--~V~~v~I~~~~~ 71 (76)
++|+++-+ ++|| .|.++.|.....
T Consensus 15 ~~~l~~~F-~~~G~~~v~~v~i~~~~~ 40 (90)
T 3p5t_L 15 DEDLTEAV-HSLGVNDILEIKFFENRA 40 (90)
T ss_dssp HHHHHHHH-HTTTCCCCCCEEEEECTT
T ss_pred HHHHHHHH-HHhCCCceEEEEEEecCC
Confidence 57889999 6999 999999987643
No 160
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=76.58 E-value=0.74 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
++|+++-+ ++||.|.++.|.....
T Consensus 15 ~~~l~~~F-~~~G~i~~v~i~~~~~ 38 (90)
T 2ki2_A 15 SEQVKELF-SQFGKVFNVKLIYDRE 38 (90)
T ss_dssp HHHHTTTH-HHHTCCSEEEECCCSS
T ss_pred HHHHHHHH-HhcCCEEEEEEEEcCC
Confidence 46788889 6999999999987653
No 161
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.54 E-value=1.8 Score=25.60 Aligned_cols=39 Identities=8% Similarity=0.257 Sum_probs=29.3
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
..+.+.|.+.|+-. ++ -++++++-+ ++||.|.+|.|...
T Consensus 22 ~~~~~~l~V~nl~~--~~---t~~~l~~~F-~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIAS--GL---TDQLMRQTF-SPFGQIMEIRVFPE 60 (109)
T ss_dssp CSSCCEEEEECCSS--CC---CHHHHHHHH-HHHSCEEEEEEETT
T ss_pred CCCCcEEEEeCCCC--CC---CHHHHHHHH-HhcCCeEEEEEeCC
Confidence 35567888888743 22 246788999 69999999999864
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.23 E-value=2.3 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=28.0
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.++.|.+.|+-. ++ -++++++-+ ++||.|.++.|.+.
T Consensus 26 ~~~~l~V~nlp~--~~---~~~~l~~~f-~~~G~i~~~~~~~~ 62 (101)
T 2la4_A 26 RVTTAYIGNIPH--FA---TEADLIPLF-QNFGFILDFKHYPE 62 (101)
T ss_dssp SCCEEEEESCCT--TC---CHHHHHHHH-HTTSCCSEEEEETT
T ss_pred CCCEEEEcCCCc--cc---CHHHHHHHH-HhCCCEEEEEEecC
Confidence 457888898842 23 347889999 69999999999743
No 163
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.59 E-value=5.9 Score=25.48 Aligned_cols=38 Identities=5% Similarity=-0.106 Sum_probs=26.6
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+|.+.|+-. +.. -++++++-+ ++||.|..|.+.+..
T Consensus 18 G~il~v~~l~~-~~~---sredLke~F-~~~G~V~~Vd~~~g~ 55 (121)
T 1owx_A 18 GCLLKFSGDLD-DQT---CREDLHILF-SNHGEIKWIDFVRGA 55 (121)
T ss_dssp CCEEEEEESCC-SSC---CHHHHHHHT-CSSCCEEEEECCTTC
T ss_pred CeEEEEecCCC-CcC---CHHHHHHHH-HhcCCEEEEEEecCC
Confidence 34566666432 212 388999999 799999999886644
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=74.42 E-value=3.4 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=29.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+= .++. ++|+++-+ ++||.|.+|.|....
T Consensus 26 ~~~~~l~V~nLp--~~~t---~~~l~~~f-~~~G~i~~v~i~~~~ 64 (216)
T 2qfj_A 26 AIMSRVYVGSIY--YELG---EDTIRQAF-APFGPIKSIDMSWDS 64 (216)
T ss_dssp HHHTEEEEECCC--TTCC---HHHHHHHH-GGGSCEEEEEECCC-
T ss_pred CcCCEEEEECCC--CCCC---HHHHHHHH-HhCCCEEEEEEeecC
Confidence 456789999983 2333 46789999 699999999997654
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.24 E-value=4.4 Score=23.18 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=25.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVII 66 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I 66 (76)
..++.|.+.|+- .++ -++|+++-+ ++||.|.+|..
T Consensus 6 ~~~~~l~V~nl~--~~~---t~~~l~~~F-~~~G~v~~v~~ 40 (94)
T 2e5g_A 6 SGLRSVFVSGFP--RGV---DSAQLSEYF-LAFGPVASVVM 40 (94)
T ss_dssp TTCCEEEEECCC--TTC---CHHHHHHHG-GGTSCEEEEEE
T ss_pred CCCCEEEEECCC--CCC---CHHHHHHHH-HhcCCeEEEEE
Confidence 345678888873 233 247889999 69999999833
No 166
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=73.65 E-value=2.3 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=25.9
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
+..|.+.|+- .++. ++|+++-+ ++||.|..+.|+..
T Consensus 16 ~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 16 ENRVVVSGLP--PSGS---WQDLKDHM-REAGDVCYADVYRD 51 (115)
T ss_dssp -CCEEEEECC--SSCC---TTHHHHHH-GGGSCEEEEEECTT
T ss_pred CcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEecC
Confidence 4577888883 3333 35678889 69999999999753
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.95 E-value=7.7 Score=26.20 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.0
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT 71 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~ 71 (76)
..+++.|.+.|+-. ++. ++++++-+ ++||.|.+|.|...+.
T Consensus 38 ~~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~G~i~~v~i~~~~~ 78 (292)
T 2ghp_A 38 NRELTTVLVKNLPK--SYN---QNKVYKYF-KHCGPIIHVDVADSLK 78 (292)
T ss_dssp ----CEEEEEEECT--TCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeEEEEEEECCC
Confidence 46678999999843 332 46788899 6999999999987543
No 168
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.82 E-value=3.1 Score=26.26 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=31.6
Q ss_pred cccccceeeeeccCCC----CccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 24 VKEECNTKYGENMVGP----GEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 24 v~~~s~vl~L~NMv~~----~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.++|--.|++...-+. ..++++|..++.+.. +.||.|..+.|...
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d 59 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQG 59 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETT
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecC
Confidence 3455555555544221 236889999999999 69999999987653
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=71.17 E-value=3.4 Score=27.16 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=27.3
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.++-|.+.|+-. ++. ++|+++-+ ++||.|.++.|+...
T Consensus 102 ~~~~l~v~nl~~--~~t---~~~l~~~F-~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 102 GVGNIFIKNLDK--SID---NKALYDTF-SAFGNILSCKVVCDE 139 (213)
T ss_dssp CTTEEEEESCCT--TCC---HHHHHHHH-GGGSCEEEEEEEEET
T ss_pred ccccceECCccc--ccH---HHHHHHHH-hhcCCeEEEEeeccC
Confidence 345677777632 222 47889999 699999999998654
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.05 E-value=5.5 Score=25.11 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=27.3
Q ss_pred cccce-eeeeccCCCCccc-cchHHHHHHHHhhcC-cceEEE
Q psy18100 26 EECNT-KYGENMVGPGEVD-SDLEPEVKDECNTKY-GEVVRV 64 (76)
Q Consensus 26 ~~s~v-l~L~NMv~~~e~d-ddl~~eV~eEC~~Ky-G~V~~v 64 (76)
+|+.. |.+.|+ |..++ ++|..++++=+ ++| |+|.+|
T Consensus 6 ~p~~T~lYV~NL--~~~~~~~~lk~~L~~lF-~~yGG~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNL--PANKDGKSVSNRLRRLS-DNCGGKVLSI 44 (96)
T ss_dssp CCSSEEEEEESC--CTTSCHHHHHHHHHHHH-HTTTCCEEEC
T ss_pred CCcceEEEEeCC--CCcCCHHHHHHHHHHHH-HHcCCeeEEE
Confidence 45666 668998 44454 46889999999 699 599987
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=70.94 E-value=4.5 Score=26.86 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=29.4
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
+++.|.+.|+-. +. -++++++-+ ++||.|.+|.|++..
T Consensus 108 ~~~~l~V~nLp~--~~---t~~~L~~~F-~~~G~v~~v~i~~~~ 145 (193)
T 2voo_A 108 KNRSVYIKGFPT--DA---TLDDIKEWL-EDKGQVLNIQMRRTL 145 (193)
T ss_dssp HHTEEEEECCCT--TC---CHHHHHHHH-TTSCCEEEEEEEECT
T ss_pred ccCEEEecCCCC--cC---CHHHHHHHH-hcCCCEEEEEEEECC
Confidence 457888899742 22 357899999 699999999998754
No 172
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.74 E-value=3.4 Score=23.66 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=26.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.+++.|.+.|+ |.++. ++|+++-+ ++||.|.++.+..
T Consensus 13 ~~~~~l~v~nL--p~~~t---~~~l~~~F-~~~G~v~~~~~~~ 49 (98)
T 2cqp_A 13 PGPTIIKVQNM--PFTVS---IDEILDFF-YGYQVIPGSVCLK 49 (98)
T ss_dssp CSSEEEEEESC--CTTCC---HHHHHHHT-TTSCCCTTTCEEE
T ss_pred CCCCEEEEeCC--CCCCC---HHHHHHHH-HHcCCccceEEEE
Confidence 45678899998 33333 46788999 6999998665554
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.59 E-value=3.7 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=27.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcc-eEEEEEe
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE-VVRVIIH 67 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~-V~~v~I~ 67 (76)
.+++.|.+.|+- .++. ++++++-+ ++||. |.++.|+
T Consensus 6 ~~~~~l~V~nLp--~~~t---~~~l~~~f-~~~G~~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIP--KMKK---REEILEEI-AKVTEGVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCC--TTSC---HHHHHHHH-HHHSTTEEEEECC
T ss_pred cCCCEEEEeCCC--CcCC---HHHHHHHH-HHhcCCceEEEEE
Confidence 456778888873 2332 46789999 69999 9999998
No 174
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=68.02 E-value=2.8 Score=25.99 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=25.2
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
|.=|++.|+=.. ++ ++++++=| ++||+|.++.+..
T Consensus 7 ~~wL~VgNL~~~--~t---e~~L~~lF-~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 7 SSWLLLKNLTAQ--ID---GPTLRTLC-MQHGPLVSFHPYL 41 (89)
T ss_dssp CCEEEEECCCTT--CC---CHHHHHHH-HHHSCEEEEEEET
T ss_pred cceEEEeCCCcc--CC---HHHHHHHH-HhhCCEEEEEEcC
Confidence 445667776322 22 37889999 6999999999876
No 175
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.28 E-value=12 Score=21.32 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=23.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV 62 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~ 62 (76)
..++.|.+.|+ |.++. ++|+++-+ ++||.|.
T Consensus 17 ~~~~~l~V~nL--~~~~t---~~~l~~~F-~~~G~v~ 47 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR---VSDLKRAL-RELGSVP 47 (97)
T ss_dssp CCCCEEEEECC--CTTCC---HHHHHHHH-HHTTCCC
T ss_pred CCCCEEEEeCC--CCcCc---HHHHHHHH-HhcCCEE
Confidence 45678889998 33333 46788999 6999996
No 176
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=65.27 E-value=7.3 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=27.4
Q ss_pred ccceeeeeccCCCCccccchHHHHHHHHhhcCc--ceEEEEEecCCC
Q psy18100 27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYG--EVVRVIIHELPT 71 (76)
Q Consensus 27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG--~V~~v~I~~~~~ 71 (76)
..+.|.+.|+= .++ -++|+++-+ ++|| .|.+|.|.....
T Consensus 54 ~~~~lfVgnLp--~~~---te~~L~~~F-~~~G~i~v~~v~i~~d~~ 94 (156)
T 3n9u_C 54 RRAAVYVGSFS--WWT---TDQQLIQVI-RSIGVYDVVELKFAENRA 94 (156)
T ss_dssp --CEEEEECCC--TTC---CHHHHHHHH-HHTTCCCEEEEEEEECTT
T ss_pred CCCEEEEeCCC--CCC---CHHHHHHHH-HHHCCccEEEEEEEecCC
Confidence 34678888862 222 246788999 6999 999999986643
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=62.14 E-value=9.4 Score=25.66 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=29.9
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.++.+.|.+.|+- .++ -++++++-+ ++||.|.++.|....
T Consensus 92 ~~~~~~l~v~nlp--~~~---t~~~l~~~f-~~~G~i~~~~i~~~~ 131 (284)
T 3smz_A 92 QPTDALLCVANLP--PSL---TQQQFEELV-RPFGSLERCFLVYSE 131 (284)
T ss_dssp CCCSCEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred cCCCCEEEEcCCC--CcC---CHHHHHHHH-HhcCCeeEEEEEeeC
Confidence 4556788888873 223 357899999 699999999987654
No 178
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=61.19 E-value=3.1 Score=24.82 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=26.6
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCcc--eEEEEEecCCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE--VVRVIIHELPT 71 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~--V~~v~I~~~~~ 71 (76)
-+.|.+.|+- .+. -++++++-. ++||. |.+|.|++.+.
T Consensus 9 m~tlfV~nL~--~~~---tee~L~~~F-~~~G~i~v~~v~i~~d~~ 48 (95)
T 2lkz_A 9 MDTIILRNIA--PHT---VVDSIMTAL-SPYASLAVNNIRLIKDKQ 48 (95)
T ss_dssp CCEEEEESCC--TTC---CHHHHHHHS-TTTCCCCGGGEECCCCSS
T ss_pred cCEEEEeCCC--CcC---CHHHHHHHH-HhhCCccEEEEEEEecCC
Confidence 4568888872 223 246888999 69995 67888887654
No 179
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=61.02 E-value=10 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=26.6
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCc--ceEEEEEecCC
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYG--EVVRVIIHELP 70 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG--~V~~v~I~~~~ 70 (76)
++.|.+.|+= .++. ++|+++-+ ++|| .|.+|.|....
T Consensus 68 ~~~lfVgnL~--~~~t---e~~L~~~F-~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 68 RIALYIGNLT--WWTT---DEDLTEAV-HSLGVNDILEIKFFENR 106 (229)
T ss_dssp -CEEEEESCC--TTCC---HHHHHHHH-HTTTCCCEEEEEEEECT
T ss_pred ccEEEEeCCC--CCCC---HHHHHHHH-HHHCCcceEEEEEEecC
Confidence 3457778862 2222 46788999 6999 99999998764
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=60.50 E-value=7.7 Score=25.98 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100 47 EPEVKDECNTKYGEVVRVIIHELPTTA 73 (76)
Q Consensus 47 ~~eV~eEC~~KyG~V~~v~I~~~~~~~ 73 (76)
+++|++=. +.||.|.++.+...+...
T Consensus 20 e~~Lk~~F-s~fGeV~~~~li~Dp~Tg 45 (136)
T 2j8a_A 20 DISIKNYF-KKYGEISHFEAFNDPNSA 45 (136)
T ss_dssp HHHHHHHH-HTTSCCSEEEEEECTTTC
T ss_pred HHHHHHHH-HhcCCeEEEEEEecCCCC
Confidence 57889999 699999999999887763
No 181
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.12 E-value=8.1 Score=22.62 Aligned_cols=38 Identities=5% Similarity=-0.179 Sum_probs=27.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE-EEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR-VIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~-v~I~~~ 69 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++||.|.+ |.|...
T Consensus 13 ~~~~~l~V~nLp~--~~---te~~l~~~F-~~~G~v~~~v~i~~~ 51 (104)
T 1wg5_A 13 ANDGFVRLRGLPF--GC---SKEEIVQFF-SGLEIVPNGMTLPVD 51 (104)
T ss_dssp SCCCEEEEESCCT--TC---CHHHHHHHT-TTCCEEEEEEECCBC
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCcceeEEEEEC
Confidence 4457888888743 22 257899999 69999997 877654
No 182
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=57.06 E-value=2.5 Score=24.04 Aligned_cols=38 Identities=16% Similarity=-0.030 Sum_probs=26.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
++++.|.+.|+- .++ -++|+++-+ ++||.|.++.+...
T Consensus 13 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~~~~~~~ 50 (95)
T 2ek1_A 13 PGPTVIKVQNMP--FTV---SIDEILDFF-YGYQVIPGSVCLKY 50 (95)
T ss_dssp --CEEEEEECCC--TTC---CHHHHHHHT-TTSCBCTTCCEEEE
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCccceEEEEe
Confidence 456889999983 333 346788999 69999987666543
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.69 E-value=8.7 Score=22.85 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=26.4
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|. +.+....
T Consensus 6 ~~~~~lfVgnLp--~~~---te~~L~~~F-~~~G~i~-~~~~~~~ 43 (114)
T 2dnl_A 6 SGSRKVFVGGLP--PDI---DEDEITASF-RRFGPLV-VDWPHKA 43 (114)
T ss_dssp SCCCCEEEECCC--TTC---CHHHHHHHT-TTTCCCC-EECTTSS
T ss_pred CCCCEEEEcCCC--CCC---CHHHHHHHH-HhcCCEE-EEEeecC
Confidence 346778888873 223 357788999 6999999 6665543
No 184
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.93 E-value=8.5 Score=22.89 Aligned_cols=40 Identities=8% Similarity=-0.227 Sum_probs=29.5
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcce-EEEEEecCC
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEV-VRVIIHELP 70 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V-~~v~I~~~~ 70 (76)
..+.+.|.+.|+- .++ -++|+++-+ ++||.| .+|.|....
T Consensus 12 ~~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 12 NSAKVCAHITNIP--FSI---TKMDVLQFL-EGIPVDENAVHVLVDN 52 (114)
T ss_dssp CSCCCEEEEESCC--TTS---CHHHHHHHT-TTSCCCSTTEEECCCT
T ss_pred CCCccEEEEeCcC--CcC---CHHHHHHHH-HhCCCcCCeEEEEECC
Confidence 3567889999983 223 246789999 699999 888887654
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=45.03 E-value=32 Score=20.98 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=25.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV 64 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v 64 (76)
.+++.|.+.|+-. .+ -++|+++.+ ++||.|..+
T Consensus 97 ~~~~~l~v~nlp~--~~---t~~~l~~~F-~~~g~v~~~ 129 (175)
T 1fje_B 97 RAARTLLAKNLSF--NI---TEDELKEVF-EDALEIRLV 129 (175)
T ss_dssp GGGGEEEEESCCS--SC---CHHHHHHHC-TTCSEEEEE
T ss_pred ccCCEEEEeCCCC--CC---CHHHHHHHH-HhcCeEEEe
Confidence 4678899999842 22 257899999 699999877
No 186
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=49.80 E-value=4.9 Score=23.89 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE--------EEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR--------VIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~--------v~I~~~ 69 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|.. +.|+..
T Consensus 5 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~ 50 (116)
T 2lcw_A 5 SDNNTIFVQGLG--ENVT---IESVADYF-KQIGIIKTNKKTGQPMINLYTD 50 (116)
Confidence 456778888873 2222 35688899 69999998 777755
No 187
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=43.62 E-value=13 Score=23.69 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=27.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+.+.|.+.|+-- ++ -++|+++-+ ++|| +.+|.|....
T Consensus 44 ~~~~~lfV~nLp~--~~---te~dL~~~F-~~~G-i~~v~i~~d~ 81 (139)
T 2hgn_A 44 TTGHCVHMRGLPY--KA---TENDIYNFF-SPLN-PVRVHIEIGP 81 (139)
T ss_dssp -CCCCEECCSCCT--TC---CHHHHHHHH-CSCC-CSEEECCCSS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HhcC-CeEEEEEECC
Confidence 4567888888743 22 357899999 6999 6699887654
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=42.38 E-value=15 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=28.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+++.|.+.|+- .++. ++++++-+ ++||.|.+|.|.+.
T Consensus 20 ~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~ 57 (261)
T 3sde_A 20 TQRCRLFVGNLP--TDIT---EEDFKRLF-ERYGEPSEVFINRD 57 (261)
T ss_dssp CGGGEEEEESCC--TTCC---HHHHHHHT-GGGCCCSEEEEETT
T ss_pred CCCCEEEEECCC--CCCC---HHHHHHHH-HhcCCEEEEEEeCC
Confidence 445788899983 3332 57888999 69999999999764
No 189
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.02 E-value=11 Score=22.80 Aligned_cols=40 Identities=10% Similarity=-0.134 Sum_probs=29.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcc---eEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE---VVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~---V~~v~I~~~~~ 71 (76)
.+.+.|.+.|+=- ++ -++|+++-+ ++||. |.+|.|.....
T Consensus 15 ~~~~~l~V~nLp~--~~---te~~l~~~F-~~~G~~~~v~~v~i~~~~~ 57 (118)
T 2db1_A 15 GEGYVVKLRGLPW--SC---SIEDVQNFL-SDCTIHDGVAGVHFIYTRE 57 (118)
T ss_dssp CCCCEEEEESCCT--TC---CHHHHHHHT-TTSCBTTGGGGEEEEECSS
T ss_pred CCCcEEEEeCCCC--CC---CHHHHHHHH-HHcCCccCceeEEEEECCC
Confidence 4467888888732 22 347799999 69999 88998876543
No 190
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=39.01 E-value=23 Score=19.31 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=27.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcC----c-------ceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKY----G-------EVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~Ky----G-------~V~~v~I~~~ 69 (76)
.+++.|.+.|+-. ++ -++|+++-+ ++| | .|.++.+...
T Consensus 4 ~~~~~l~V~nLp~--~~---t~~~l~~~F-~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPF--GI---TEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCT--TC---CHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HHHhhhcccccCCCCcceEEEecCC
Confidence 4567888898732 23 247788888 588 8 9999998764
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=38.51 E-value=11 Score=23.20 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=25.5
Q ss_pred cceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEec
Q psy18100 28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHE 68 (76)
Q Consensus 28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~ 68 (76)
..-|.+.|+- .++ -++|+++-+ ++|| .|..+.|+.
T Consensus 28 ~~~l~VgnLp--~~~---te~dL~~~F-~~~G~~v~~v~i~~ 63 (111)
T 2jvr_A 28 RYRITMKNLP--EGC---SWQDLKDLA-RENSLETTFSSVNT 63 (111)
T ss_dssp CEEEEEECSS--CCC---CHHHHHHHH-HHHTCCCSEEECSS
T ss_pred CCEEEEECCC--CCC---CHHHHHHHH-HHhCCeeEEEEEEc
Confidence 4567778873 222 256888999 6999 899999863
No 192
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.19 E-value=22 Score=20.64 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV 62 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~ 62 (76)
.+++.|.+.|+- .++ -++++++-+ ++||.|.
T Consensus 23 ~~~~~l~V~nLp--~~~---t~~~l~~~f-~~~G~v~ 53 (115)
T 2cpx_A 23 EPNKVLYLKNLS--PRV---TERDLVSLF-ARFQEKK 53 (115)
T ss_dssp SCCSEEEEECCC--TTC---CHHHHHHHT-HHHHHSS
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HHhCCcc
Confidence 577899999973 233 246788899 6999993
No 193
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.56 E-value=10 Score=21.38 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=25.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcc-eEEEEEe
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE-VVRVIIH 67 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~-V~~v~I~ 67 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||. |..+.+.
T Consensus 6 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 6 SGMNKLYIGNLS--PAV---TADDLRQLF-GDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCCEEEECCC--TTC---CHHHHHHHH-HHTTCCCSSCEEE
T ss_pred CCCcEEEEeCCC--CCC---CHHHHHHHH-HHcCCceEEEEEc
Confidence 456778888883 233 246788999 69999 6666553
No 194
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=36.41 E-value=28 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=28.6
Q ss_pred cceeeeeccCCCCc--cccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 28 CNTKYGENMVGPGE--VDSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 28 s~vl~L~NMv~~~e--~dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.++.++.|++.+.. ...++.+.+++-| ++||.+..-.||.
T Consensus 179 ~~~~vV~N~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~Ip~ 220 (286)
T 2xj4_A 179 MDWVVLRNRLATTEARNRKRLEDRLNALA-KRVGFRIGPGLRD 220 (286)
T ss_dssp CEEEEEEECCTTCCGGGHHHHHHHHHHHH-HHHCCEEEECCCC
T ss_pred ccEEEEEeeecCCCcchhHHHHHHHHHHH-HHcCCccCCCCCc
Confidence 35778999999875 5567788888888 5899744444444
No 195
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.61 E-value=18 Score=21.25 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=27.7
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
.+.+.|.+.|+-. ++ -++|+++-+ ++||.| +|.|....
T Consensus 13 ~~~~~l~V~nLp~--~~---te~~l~~~F-~~~G~~-~v~i~~d~ 50 (102)
T 1wez_A 13 TTGHCVHMRGLPY--RA---TENDIYNFF-SPLNPM-RVHIEIGP 50 (102)
T ss_dssp SSSCEEEEESCCT--TC---CHHHHHHSS-CSCCCS-EEEEEESS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHH-HHcCce-EEEEEECC
Confidence 4567888999832 23 257889999 699966 88887654
No 196
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=35.52 E-value=15 Score=23.34 Aligned_cols=40 Identities=8% Similarity=-0.194 Sum_probs=28.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcc---eEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE---VVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~---V~~v~I~~~~~ 71 (76)
.+.+.|.+.|+--. --++|+++-+ ++||. |.+|.|.....
T Consensus 42 ~~~~~lfVgnLp~~-----~te~dL~~~F-~~~G~v~~v~~v~i~~d~~ 84 (136)
T 2hgl_A 42 GEGFVVKLRGLPWS-----CSVEDVQNFL-SDCTIHDGAAGVHFIYTRE 84 (136)
T ss_dssp CTTCEEEEESCCTT-----CCHHHHHHHT-TTCCCSSSSTTEEEEECSS
T ss_pred CCCCEEEEeCCCCC-----CCHHHHHHHH-HHhCCcCceeEEEEEECCC
Confidence 34567888886321 2357899999 69999 88898886543
No 197
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.08 E-value=21 Score=22.18 Aligned_cols=38 Identities=8% Similarity=-0.102 Sum_probs=27.3
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcce----EEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEV----VRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V----~~v~I~~~ 69 (76)
.++..|.+.|+- -+. -++||++-+ ++||.| .+|.|+..
T Consensus 21 ~~~~~v~V~nLp--~~~---te~dl~~~F-~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLP--FTA---TAEEVVAFF-GQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCC--TTC---CHHHHHHHH-HTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-HhhCCccCCcceEEEEEC
Confidence 456789999973 222 357899999 699976 57877754
No 198
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.80 E-value=49 Score=18.27 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=27.9
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~ 69 (76)
.+.+.|.+.|+- .++ -++|+++-+ ++| .|.++.|+..
T Consensus 8 ~~~~~l~v~nLp--~~~---t~~~l~~~F-~~~-~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAP--FNV---TEKNVMEFL-APL-KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCC--SSC---CHHHHHHHH-TTS-CCSEEEEEEC
T ss_pred CCccEEEEECCC--CCC---CHHHHHHHH-hhC-CceEEEEEEC
Confidence 446788889983 223 256789999 699 9999999876
No 199
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=29.47 E-value=32 Score=21.12 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.5
Q ss_pred cchHHHHHHHHhhcCcceEEEEEec
Q psy18100 44 SDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 44 ddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.|+..-||.|..+|||+.=+|+|-+
T Consensus 44 k~iA~~IK~~fDkkyG~~WhcIVG~ 68 (97)
T 4ds1_A 44 RDIAGTVKKQLDVKYGNTWHVIVGK 68 (97)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEEEE
T ss_pred HHHHHHHHHHHhCccCCCCEEEEcc
Confidence 4788899999999999999998843
No 200
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.43 E-value=54 Score=18.44 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=22.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcce
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEV 61 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V 61 (76)
..+++.|.+.|+-. ++ -++|+++-+ ++||.|
T Consensus 12 ~~~~~~l~V~nLp~--~~---t~~~l~~~F-~~~g~v 42 (101)
T 2fc9_A 12 SGESKTLVLSNLSY--SA---TEETLQEVF-EKATFI 42 (101)
T ss_dssp SCCCSEEEEESCCT--TC---CHHHHHHHC-SSCSEE
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCEE
Confidence 35678999999843 23 246788899 699988
No 201
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.59 E-value=45 Score=20.09 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=28.2
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~ 70 (76)
..+..|.+.|+-- +. -++||++-+ ++| .|.+|.|....
T Consensus 14 ~~~~~v~V~nLp~--~~---te~dl~~~F-~~~-~v~~v~i~~d~ 51 (109)
T 2dnn_A 14 PDDLYVSVHGMPF--SA---MENDVRDFF-HGL-RVDAVHLLKDH 51 (109)
T ss_dssp HHHHEEEEECCCS--SC---CHHHHHHHT-TTS-CCCEEEECCCT
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHh-ccC-CeeEEEEEECC
Confidence 4457899999832 22 357899999 699 89999998654
No 202
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=28.16 E-value=51 Score=18.57 Aligned_cols=32 Identities=9% Similarity=-0.095 Sum_probs=23.0
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR 63 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~ 63 (76)
.+++.|.+.|+- .++. ++|+++-+ ++||.|..
T Consensus 15 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~v~~ 46 (101)
T 1fj7_A 15 TTPFNLFIGNLN--PNKS---VAELKVAI-SELFAKND 46 (101)
T ss_dssp SCSEEEEEECCC--TTSC---HHHHHHHH-HHHHHHHT
T ss_pred CCCCEEEEeCCC--CCCC---HHHHHHHH-HHhCCcce
Confidence 456788899983 3332 46788889 69998876
No 203
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=27.78 E-value=15 Score=21.46 Aligned_cols=40 Identities=3% Similarity=-0.148 Sum_probs=27.8
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcc---eEEEEEecCCC
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE---VVRVIIHELPT 71 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~---V~~v~I~~~~~ 71 (76)
...+.|.+.|+= .++. ++|+++-+ ++||. |.+|.|.....
T Consensus 9 ~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~g~~~~v~~v~i~~~~~ 51 (107)
T 2lmi_A 9 DDVFLIRAQGLP--WSCT---MEDVLNFF-SDCRIRNGENGIHFLLNRD 51 (107)
T ss_dssp SSCCEEEEECCC--SSCC---SHHHHHHT-TTSCBTTTTTTEECCCCTT
T ss_pred CCccEEEEeCCC--CCCC---HHHHHHHH-HhcCCcCCcceEEEEECCC
Confidence 345778888873 2232 46778888 58887 89999886543
No 204
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=26.89 E-value=37 Score=21.07 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100 43 DSDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 43 dddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
..|+..-||.|..+|||+.=+|+|=+
T Consensus 48 ekdiA~~IK~~fDkkyG~~WHcIVG~ 73 (102)
T 1yo3_A 48 EKDIAAHIKKEFDRKYDPTWHCVVGR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHhhhcCCCCEEEEcc
Confidence 35888999999999999999998853
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.41 E-value=22 Score=21.26 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=23.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR 63 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~ 63 (76)
.+.+.|.+.|+- .++. ++|+++-+ ++||.|..
T Consensus 23 ~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLP--FEAE---NKHVIDFF-KKLDIVED 54 (124)
T ss_dssp CCCCEEEEECCC--TTCC---HHHHHHHS-CSSCBCTT
T ss_pred CCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCccc
Confidence 445788899983 2232 47889999 69999987
No 206
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=25.20 E-value=35 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.0
Q ss_pred cchHHHHHHHHhhcCcceEEEEEec
Q psy18100 44 SDLEPEVKDECNTKYGEVVRVIIHE 68 (76)
Q Consensus 44 ddl~~eV~eEC~~KyG~V~~v~I~~ 68 (76)
.|+..-||.|..+|||+.=+|+|=+
T Consensus 36 k~iA~~IK~~fD~kyg~~WhciVG~ 60 (89)
T 3rjs_A 36 KDIAAFIKKEFDRKHNPTWHCVVGR 60 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEEES
T ss_pred HHHHHHHHHHHhcccCCCCEEEEec
Confidence 5788999999999999999988865
No 207
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=24.50 E-value=12 Score=24.80 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=28.7
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.+.|+||+++.+.-|..+...--.=..+|.|...|..++-+.||+
T Consensus 90 ~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~ 134 (145)
T 4hr2_A 90 NRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIA 134 (145)
T ss_dssp HHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHH
T ss_pred HhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHH
Confidence 478999999887766654321112235788888877666655553
No 208
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=23.64 E-value=53 Score=18.72 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=21.0
Q ss_pred cchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 44 SDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 44 ddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
.++.++|+..-.++||.+ ++.|+-.|..
T Consensus 60 h~i~~~ie~~l~~~~~~~-~vtIh~ep~~ 87 (94)
T 3byp_A 60 HRLCDELERALAQAFPGL-QATIHVEPEG 87 (94)
T ss_dssp HHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCC-EEEEEeCCCC
Confidence 357788877775589987 9999877644
No 209
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=23.62 E-value=15 Score=24.25 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=28.6
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.+.|+||+++.+..|+.+...--.=..+|.|-..|-.++-+.||.
T Consensus 90 ~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 134 (146)
T 3evo_A 90 IRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEIS 134 (146)
T ss_dssp HHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHH
T ss_pred HHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 468999999888766654321112235788887776665555543
No 210
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.71 E-value=98 Score=17.27 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=21.7
Q ss_pred ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceE
Q psy18100 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV 62 (76)
Q Consensus 25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~ 62 (76)
..+++.|.+.|+- .++. ++|+++-+ ++|+.|.
T Consensus 12 ~~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~~~~~ 43 (102)
T 2fc8_A 12 SQPSKTLFVKGLS--EDTT---EETLKESF-DGSVRAR 43 (102)
T ss_dssp SCCCSSEEEECCC--TTCC---HHHHHHTS-TTCSEEE
T ss_pred CCCCCEEEEeCCC--CccC---HHHHHHHh-cCCeEEE
Confidence 3667889999983 2232 46788888 5887543
No 211
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=22.65 E-value=14 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=28.5
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.++|+||++..+..|+.+...--.=..+|.+...|-.++-+.||+
T Consensus 88 ~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 132 (151)
T 3mpd_A 88 GRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIK 132 (151)
T ss_dssp HHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHH
T ss_pred HHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 467999998887766654321111145788887777666666554
No 212
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=21.85 E-value=29 Score=19.38 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=24.6
Q ss_pred cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEE
Q psy18100 26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV 64 (76)
Q Consensus 26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v 64 (76)
.+++.|.+.|+- .++ -++|+++-+ ++||.|..+
T Consensus 14 ~~~~~l~V~nL~--~~~---t~~~l~~~F-~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLS--FNI---TEDELKEVF-EDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCC--SSC---CHHHHHHHH-CSEEEECCE
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHH-hhCCcEEEe
Confidence 467889999983 333 246789999 699998766
No 213
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=21.69 E-value=15 Score=23.91 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=28.4
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.++|+||+++....|+.+...--.=...|.+-..|-.++-+.|++
T Consensus 84 ~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (137)
T 1wkj_A 84 VRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIA 128 (137)
T ss_dssp HHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHH
Confidence 467999999887766655321111225688887776666555553
No 214
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=21.38 E-value=61 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=22.2
Q ss_pred cchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100 44 SDLEPEVKDECNTKYGEVVRVIIHELPTT 72 (76)
Q Consensus 44 ddl~~eV~eEC~~KyG~V~~v~I~~~~~~ 72 (76)
+++.+++++...++||. .++.||-.|..
T Consensus 254 ~~i~~~i~~~l~~~~~~-~~v~ih~ep~~ 281 (283)
T 3h90_A 254 HMVADQVEQAILRRFPG-SDVIIHQDPCS 281 (283)
T ss_dssp HHHHHHHHHHHHHHSTT-CEEEEEEECSC
T ss_pred HHHHHHHHHHHHHHCCC-CeEEEEeccCC
Confidence 46889999888568987 68999987754
No 215
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=21.19 E-value=16 Score=24.41 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=28.5
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.++|+||++..+..|+.+...--.=..+|.+...|-.++-+.||+
T Consensus 90 ~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 134 (155)
T 3r9l_A 90 SRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIA 134 (155)
T ss_dssp HHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHH
T ss_pred HHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 467999998887766654321111245788887777666555554
No 216
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=20.87 E-value=19 Score=24.63 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=29.3
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.++|+||++..+..|+.+...--.=..+|.|-..|..++-+.||+
T Consensus 107 ~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~ 151 (172)
T 3l7u_A 107 GRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIG 151 (172)
T ss_dssp HHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHH
T ss_pred HHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHH
Confidence 468999999887766654322112246788888777666666554
No 217
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=20.76 E-value=19 Score=24.16 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=28.1
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.+.|+||+++.+..|+.+...--.=..+|.+-..|-.++-+.||+
T Consensus 84 ~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (157)
T 3q8u_A 84 SRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREIN 128 (157)
T ss_dssp HHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHH
T ss_pred HHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHH
Confidence 467999999888776654321111134688887776665555553
No 218
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=20.20 E-value=21 Score=23.56 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=28.7
Q ss_pred eccccCCCCCCCCCccccccccceeeeeccCCCCccccchHHHHH
Q psy18100 7 DLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVK 51 (76)
Q Consensus 7 ~~NMv~p~evd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~ 51 (76)
.+.|+||++..+..|+.+...--.=..+|.+-..|-.++-+.||+
T Consensus 85 ~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 129 (150)
T 1nb2_A 85 ARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIG 129 (150)
T ss_dssp HHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHH
T ss_pred HHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHH
Confidence 467999999877766655322112235788887777666655554
Done!