Your job contains 1 sequence.
>psy18100
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGE
VVRVIIHELPTTANVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy18100
(76 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086683 - symbol:Spf45 "Spf45" species:7227 "Droso... 159 5.9e-11 1
ZFIN|ZDB-GENE-040426-817 - symbol:rbm17 "RNA binding moti... 118 1.8e-06 1
UNIPROTKB|E2RMQ0 - symbol:RBM17 "Uncharacterized protein"... 117 2.1e-06 1
UNIPROTKB|E1BUJ1 - symbol:RBM17 "Uncharacterized protein"... 117 2.2e-06 1
UNIPROTKB|A7MB77 - symbol:RBM17 "RBM17 protein" species:9... 116 2.7e-06 1
UNIPROTKB|Q96I25 - symbol:RBM17 "Splicing factor 45" spec... 116 2.7e-06 1
MGI|MGI:1924188 - symbol:Rbm17 "RNA binding motif protein... 116 2.8e-06 1
RGD|1311208 - symbol:Rbm17 "RNA binding motif protein 17"... 116 2.8e-06 1
UNIPROTKB|F1RUL1 - symbol:RBM17 "Uncharacterized protein"... 116 2.8e-06 1
TAIR|locus:2028130 - symbol:DRT111 "DNA-DAMAGE-REPAIR/TOL... 109 1.5e-05 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 105 6.5e-05 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 104 7.9e-05 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 98 0.00035 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 98 0.00036 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 98 0.00036 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 98 0.00037 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 98 0.00039 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 98 0.00039 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 98 0.00039 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 98 0.00039 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 95 0.00096 1
>FB|FBgn0086683 [details] [associations]
symbol:Spf45 "Spf45" species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IGI] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 EMBL:AE014134 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
HSSP:Q01081 GO:GO:0000381 KO:K12840 InterPro:IPR016967
PIRSF:PIRSF031066 GeneTree:ENSGT00390000008837 UniGene:Dm.7003
GeneID:3355114 KEGG:dme:Dmel_CG17540 CTD:3355114
FlyBase:FBgn0086683 GenomeRNAi:3355114 NextBio:850653 EMBL:DQ295864
EMBL:BT044104 RefSeq:NP_001036426.1 SMR:Q7PL83 IntAct:Q7PL83
MINT:MINT-964924 STRING:Q7PL83 EnsemblMetazoa:FBtr0111239
UCSC:CG17540-RA InParanoid:Q7PL83 OMA:RAGFYNQ Uniprot:Q7PL83
Length = 403
Score = 159 (61.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 31/55 (56%), Positives = 37/55 (67%)
Query: 14 GEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
G++ + +K NMVGPG+VD +LEPEVKDECNTKYGEV VIIHE
Sbjct: 294 GDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHE 348
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVGPG+VD +LEPEVK+ECNTKYGE
Sbjct: 311 VLLRNMVGPGDVDEELEPEVKDECNTKYGE 340
>ZFIN|ZDB-GENE-040426-817 [details] [associations]
symbol:rbm17 "RNA binding motif protein 17"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 ZFIN:ZDB-GENE-040426-817 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 HSSP:P26368 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:BX842686 EMBL:BC045473 IPI:IPI00506477 RefSeq:NP_957209.1
UniGene:Dr.82331 SMR:Q7ZVN6 STRING:Q7ZVN6
Ensembl:ENSDART00000044043 GeneID:393889 KEGG:dre:393889
InParanoid:Q7ZVN6 NextBio:20814869 Uniprot:Q7ZVN6
Length = 418
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 27 ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
+C TK NMVG GEVD DLE E K+EC KYG+VVR +I E+
Sbjct: 318 KCPTKVVLLRNMVGRGEVDEDLEAETKEECE-KYGKVVRCVIFEI 361
Score = 94 (38.1 bits), Expect = 0.00070, P = 0.00070
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 324 VLLRNMVGRGEVDEDLEAETKEECE-KYGK 352
>UNIPROTKB|E2RMQ0 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066
CTD:84991 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:AAEX03001312 RefSeq:XP_849339.1 ProteinModelPortal:E2RMQ0
Ensembl:ENSCAFT00000008395 GeneID:478014 KEGG:cfa:478014
NextBio:20853403 Uniprot:E2RMQ0
Length = 401
Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEAETKEECE-KYGKVGKCVIFEIP 345
Score = 95 (38.5 bits), Expect = 0.00052, P = 0.00052
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 307 VLLRNMVGAGEVDEDLEAETKEECE-KYGK 335
>UNIPROTKB|E1BUJ1 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066 OMA:IPPPVYD
GeneTree:ENSGT00390000008837 EMBL:AADN02039686 EMBL:AADN02039687
IPI:IPI00599203 Ensembl:ENSGALT00000010237 Uniprot:E1BUJ1
Length = 405
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 15 EVDSDLEPEVKEECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
+ DS+ E+ + C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 291 KADSNPLTEILK-CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 346
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 308 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 336
>UNIPROTKB|A7MB77 [details] [associations]
symbol:RBM17 "RBM17 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:DAAA02035345 EMBL:BC151377 IPI:IPI00691962
RefSeq:NP_001094553.1 UniGene:Bt.106839 SMR:A7MB77 STRING:A7MB77
Ensembl:ENSBTAT00000029268 GeneID:512694 KEGG:bta:512694
InParanoid:A7MB77 NextBio:20870515 Uniprot:A7MB77
Length = 401
Score = 116 (45.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345
Score = 94 (38.1 bits), Expect = 0.00066, P = 0.00066
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 307 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 335
>UNIPROTKB|Q96I25 [details] [associations]
symbol:RBM17 "Splicing factor 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000467
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102
PROSITE:PS50174 SMART:SM00361 SMART:SM00443 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:NOG317167 HOGENOM:HOG000231726
KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066 PDB:2PEH PDBsum:2PEH
EMBL:BC007871 EMBL:BC009064 EMBL:BC039322 IPI:IPI00176706
RefSeq:NP_001139019.1 RefSeq:NP_116294.1 UniGene:Hs.498548 PDB:2PE8
PDBsum:2PE8 ProteinModelPortal:Q96I25 SMR:Q96I25 DIP:DIP-29409N
IntAct:Q96I25 MINT:MINT-3053773 STRING:Q96I25 PhosphoSite:Q96I25
DMDM:34925383 PaxDb:Q96I25 PeptideAtlas:Q96I25 PRIDE:Q96I25
DNASU:84991 Ensembl:ENST00000379888 Ensembl:ENST00000446108
GeneID:84991 KEGG:hsa:84991 UCSC:uc001ijb.3 CTD:84991
GeneCards:GC10P006130 HGNC:HGNC:16944 HPA:HPA037477 MIM:606935
neXtProt:NX_Q96I25 PharmGKB:PA134860993 HOVERGEN:HBG059363
InParanoid:Q96I25 OMA:IPPPVYD OrthoDB:EOG48SGTF PhylomeDB:Q96I25
EvolutionaryTrace:Q96I25 GenomeRNAi:84991 NextBio:75577
ArrayExpress:Q96I25 Bgee:Q96I25 CleanEx:HS_RBM17
Genevestigator:Q96I25 GermOnline:ENSG00000134453 Uniprot:Q96I25
Length = 401
Score = 116 (45.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345
Score = 94 (38.1 bits), Expect = 0.00066, P = 0.00066
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 307 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 335
>MGI|MGI:1924188 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=TAS] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00361 SMART:SM00443 MGI:MGI:1924188 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000375 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 EMBL:AL831794 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD OrthoDB:EOG48SGTF EMBL:AF083384
EMBL:BC034896 IPI:IPI00170394 RefSeq:NP_690037.1 UniGene:Mm.182769
ProteinModelPortal:Q8JZX4 SMR:Q8JZX4 STRING:Q8JZX4
PhosphoSite:Q8JZX4 PaxDb:Q8JZX4 PRIDE:Q8JZX4
Ensembl:ENSMUST00000040314 GeneID:76938 KEGG:mmu:76938
UCSC:uc008iio.1 GeneTree:ENSGT00390000008837 InParanoid:A2AP41
NextBio:346129 Bgee:Q8JZX4 CleanEx:MM_RBM17 Genevestigator:Q8JZX4
GermOnline:ENSMUSG00000037197 Uniprot:Q8JZX4
Length = 405
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 295 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 311 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 339
>RGD|1311208 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50174 SMART:SM00361 SMART:SM00443
RGD:1311208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:BC079248 IPI:IPI00464500 RefSeq:NP_001013076.1
UniGene:Rn.20694 SMR:Q6AY02 STRING:Q6AY02
Ensembl:ENSRNOT00000025550 GeneID:291295 KEGG:rno:291295
UCSC:RGD:1311208 InParanoid:Q6AY02 NextBio:632368
Genevestigator:Q6AY02 Uniprot:Q6AY02
Length = 405
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 295 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 311 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 339
>UNIPROTKB|F1RUL1 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066 OMA:IPPPVYD
GeneTree:ENSGT00390000008837 EMBL:CU928668
Ensembl:ENSSSCT00000012186 Uniprot:F1RUL1
Length = 406
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
SD P + +C TK NMVG GEVD DLE E K+EC KYG+V + +I E+P
Sbjct: 296 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 350
Score = 94 (38.1 bits), Expect = 0.00067, P = 0.00067
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 5 ILDLNMVGPGEVDSDLEPEVKEECNTKYGE 34
+L NMVG GEVD DLE E KEEC KYG+
Sbjct: 312 VLLRNMVGAGEVDEDLEVETKEECE-KYGK 340
>TAIR|locus:2028130 [details] [associations]
symbol:DRT111 "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006312 "mitotic
recombination" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0010212 "response to
ionizing radiation" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0009507 "chloroplast"
evidence=ISS] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00360 SMART:SM00443 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 EMBL:AC009917 GO:GO:0003723 EMBL:M98455
EMBL:AY045859 EMBL:AY091399 IPI:IPI00533002 PIR:G86429 PIR:S33706
RefSeq:NP_174336.1 UniGene:At.20697 UniGene:At.75631
ProteinModelPortal:P42698 SMR:P42698 IntAct:P42698 PaxDb:P42698
PRIDE:P42698 EnsemblPlants:AT1G30480.1 GeneID:839927
KEGG:ath:AT1G30480 GeneFarm:2948 TAIR:At1g30480 eggNOG:NOG317167
HOGENOM:HOG000231726 InParanoid:P42698 KO:K12840 OMA:EEMEKCG
PhylomeDB:P42698 ProtClustDB:CLSN2714275 Genevestigator:P42698
GermOnline:AT1G30480 InterPro:IPR016967 PIRSF:PIRSF031066
Uniprot:P42698
Length = 387
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
NMVGPG+VD +LE EV EC KYG V RV+I E+
Sbjct: 289 NMVGPGQVDDELEDEVGGECG-KYGTVTRVLIFEI 322
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 105 (42.0 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMVGP ++D DLE EV +EC K+G V RVII++
Sbjct: 437 KQESTVMVLRNMVGPEDIDDDLEGEVTEECG-KFGAVNRVIIYQ 479
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 104 (41.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
NMVGP ++D DLE EV +EC KYG V RVII++
Sbjct: 425 NMVGPEDIDDDLEGEVMEECG-KYGAVNRVIIYQ 457
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 98 (39.6 bits), Expect = 0.00035, P = 0.00035
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 421 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 463
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 98 (39.6 bits), Expect = 0.00036, P = 0.00036
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 429 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 471
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 98 (39.6 bits), Expect = 0.00036, P = 0.00036
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 429 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 471
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 98 (39.6 bits), Expect = 0.00037, P = 0.00037
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 442 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 484
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 458 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 500
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 459 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 501
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 463 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 505
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 98 (39.6 bits), Expect = 0.00039, P = 0.00039
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
K+E NMV P ++D DLE EV +EC K+G V RVII++
Sbjct: 463 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 505
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 95 (38.5 bits), Expect = 0.00096, P = 0.00096
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN 74
NMVGP +VD L+ E+++EC+ K+G V RVII T N
Sbjct: 543 NMVGPEDVDETLQEEIQEECS-KFGTVSRVIIFNEKQTEN 581
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.309 0.133 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 76 76 0.00091 102 3 11 23 0.50 29
29 0.48 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 443 (47 KB)
Total size of DFA: 84 KB (2066 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.84u 0.11s 10.95t Elapsed: 00:00:01
Total cpu time: 10.85u 0.11s 10.96t Elapsed: 00:00:01
Start: Thu Aug 15 12:53:00 2013 End: Thu Aug 15 12:53:01 2013