BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18101
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 29 DEWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL 87
+EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD
Sbjct: 4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDC 63
Query: 88 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGE 121
+++ +D +PLM++GE + +++ YG +G
Sbjct: 64 DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR 97
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 29 DEWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDL 87
+EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD
Sbjct: 8 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDC 67
Query: 88 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGE 121
+++ +D +PLM++GE + +++ YG +G
Sbjct: 68 DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGS 101
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 30 EWVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLE 88
EW+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD +
Sbjct: 3 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCD 62
Query: 89 LVHGMDYVLPLMEMGEECQIEITARFGYGDKGE 121
++ +D +PLM++GE + +++ YG +G
Sbjct: 63 VIQALDLSVPLMDVGETAMVTADSKYCYGPQGR 95
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 31 WVDILGSGHIKKKITKHGEP-DTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLEL 89
W+DILG+G ++KK G P +RP +G + + LE+ T V+ L +GD ++
Sbjct: 36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDV 95
Query: 90 VHGMDYVLPLMEMGEECQIEITARFGYGDKGE 121
+ +D +PLM++GE + +++ YG +G
Sbjct: 96 IQALDLSVPLMDVGETAMVTADSKYCYGPQGS 127
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 33 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHG 92
DI G I KKI K G+ P+ D + +LED T+V + +E V D L
Sbjct: 138 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPA 197
Query: 93 MDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ + M+ GE+ + + ++G+G+ G P
Sbjct: 198 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRP 227
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 39 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLV-----ETFDNLEICVGDLELVHGM 93
I KK+ K E RP G + + GKL+D T+ + + E + ++ G+
Sbjct: 261 KILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGL 320
Query: 94 DYVLPLMEMGEECQIEITARFGYGD 118
D + M+ GE + I + YG
Sbjct: 321 DRAVLNMKKGEVALVTIPPEYAYGS 345
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 54 PQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIE 109
P+ GD + G L D D+ + D + +G +++ G D + M+ GE
Sbjct: 43 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFT 102
Query: 110 ITARFGYGDKGEP 122
I YG+ G P
Sbjct: 103 IPPELAYGESGSP 115
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 33 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHG 92
DI G I KKI K G+ P+ D + +LED T+V + +E V D L
Sbjct: 122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPA 181
Query: 93 MDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ + M+ GE+ + + ++G+G+ G P
Sbjct: 182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRP 211
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 39 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLV-----ETFDNLEICVGDLELVHGM 93
I KK+ K E RP G + + GKL+D T+ + + E + ++ G+
Sbjct: 245 KILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGL 304
Query: 94 DYVLPLMEMGEECQIEITARFGYGD 118
D + M+ GE + I + YG
Sbjct: 305 DRAVLNMKKGEVALVTIPPEYAYGS 329
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 54 PQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIE 109
P+ GD + G L D D+ + D + +G +++ G D + M+ GE
Sbjct: 27 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFT 86
Query: 110 ITARFGYGDKGEP 122
I YG+ G P
Sbjct: 87 IPPELAYGESGSP 99
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICVGDLELV 90
K + K G+ P++GD+ G L+D T+ +T L VG +++
Sbjct: 5 KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 91 HGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
G D L M GE+ ++EI + YG KG+P
Sbjct: 65 RGWDEALLTMSKGEKARLEIEPEWAYGKKGQP 96
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 38 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGM 93
G++K G+ T P+ GDL I G LE+ D+ V+ + +G +++ G
Sbjct: 6 GNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGW 65
Query: 94 DYVLPLMEMGEECQIEITARFGYGDKGEP 122
D +P + +GE+ ++ I + YG +G P
Sbjct: 66 DVGIPKLSVGEKARLTIPGPYAYGPRGFP 94
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 36 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICV 84
G K I K G+ P++GD+ G L D T+ +T L V
Sbjct: 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 85 GDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
G +++ G D L M GE+ ++EI + YG KG+P
Sbjct: 62 GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP 99
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 38 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETF----DNLEICVGDLELVHGM 93
G + K I K G+ +P G + G LE+ T ++ D +G ++ G
Sbjct: 14 GGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGW 73
Query: 94 DYVLPLMEMGEECQIEITARFGYGDKGEP 122
D + M GE + I + +GYGD G P
Sbjct: 74 DLGVATMTKGEVAEFTIRSDYGYGDAGSP 102
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED V++ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G++ + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 12 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 71
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 72 QRAKLTISPDYAYGATGHP 90
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 30 EWVDILGSGHIKKKITKHGE--PDTRPQRGDLCVISGFGKLEDDTLVETFDN-------L 80
E V + G + K I + GE + P++G+ + GKLE V FD+
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKV--FDSSRERNVPF 64
Query: 81 EICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKG 120
+ +G E++ G D + M E+C + + +++GYG++G
Sbjct: 65 KFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEG 104
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 26 EVEDEWVDILGSGHIKKKITKHGEP--DTRPQRGDLCVISGFGKLEDDTLV--ETFDN-- 79
E E E V++ G + K I K G+ + P++G+ + GKLE V +FD
Sbjct: 4 EQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV 63
Query: 80 -LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKG 120
+ + E++ G D + M E+C + I + +GYGD+G
Sbjct: 64 PFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG 105
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 26 EVEDEWVDILGSGHIKKKITKHGEP--DTRPQRGDLCVISGFGKLEDDTLV--ETFDN-- 79
E E E V++ G + K I K G+ + P++G+ + GKLE V +FD
Sbjct: 4 EQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV 63
Query: 80 -LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKG 120
+ + E++ G D + M E+C + I + +GYGD+G
Sbjct: 64 PFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG 105
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+RG CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGVP 88
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 37 SGHIKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHG 92
S ++KK+ G+ T+PQ G + G+ D D+ + +G E++ G
Sbjct: 23 SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82
Query: 93 MDYVLPLMEMGEECQIEITARFGYGDKGEP 122
D + M +GE+ I + YG++G P
Sbjct: 83 WDQGVATMTLGEKALFTIPYQLAYGERGYP 112
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+ G CV+ G LED D+ + + +G E++ G + + M +G
Sbjct: 10 GDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ I+ + YG G P
Sbjct: 70 QRAKLTISPDYAYGATGHP 88
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 95
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 32 VLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 91
Query: 96 VLPLMEMGEECQIEITARFGYGDKGEP 122
+ M++GE C+I + YG G P
Sbjct: 92 AVATMKVGELCRITCKPEYAYGSAGSP 118
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 95
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 33 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 92
Query: 96 VLPLMEMGEECQIEITARFGYGDKGEP 122
+ M++GE C I + YG G P
Sbjct: 93 AIATMKVGEVCHITCKPEYAYGSAGSP 119
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 33 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFD--NLEICVG---DL 87
D+L G I ++ + GE + P G I LE FD ++ VG D
Sbjct: 141 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIH----LEGRCGGRVFDCRDVAFTVGEGEDH 196
Query: 88 ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIF 124
++ G+D L M+ E+C + + R+G+G+ G+P F
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKF 233
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 35 KIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGV 94
Query: 98 PLMEMGEECQIEITARFGYGDKG 120
M+ GE C + + YG G
Sbjct: 95 ATMKKGEICHLLCKPEYAYGATG 117
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 95
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 37 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 96
Query: 96 VLPLMEMGEECQIEITARFGYGDKGEP 122
+ M++GE C I + YG G P
Sbjct: 97 AIATMKVGEVCHITCKPEYAYGSAGSP 123
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDY 95
+ K I + G P GD + G L D D+ ++ D +G E++ D
Sbjct: 53 VLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDI 112
Query: 96 VLPLMEMGEECQIEITARFGYGDKGEP 122
+ M++GE C I + YG G P
Sbjct: 113 AIATMKVGEVCHITCKPEYAYGSAGSP 139
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVHGMDYVLPLMEMG 103
G+ T P+ G + V+ G L D + ++ VG E++ G D + M +G
Sbjct: 11 GDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVG 70
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ + + YG +G P
Sbjct: 71 QRAKLVCSPDYAYGSRGHP 89
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 17 PVIPDKPEEEVEDEWVDILGS-----GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 71
P IP E E +D G G I ++ + GE + P G I LE
Sbjct: 124 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIH----LEGR 179
Query: 72 TLVETFD--NLEICVG---DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIF 124
FD ++ VG D ++ G+D L M+ E+C + + R+G+G+ G+P F
Sbjct: 180 CGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKF 237
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 39 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 98
Query: 98 PLMEMGEECQIEITARFGYGDKG 120
M+ GE C + + YG G
Sbjct: 99 ATMKKGEICHLLCKPEYAYGSAG 121
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 17 PVIPDKPEEEVEDEWVDILGS-----GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 71
P IP E E +D G G I ++ + GE + P G I LE
Sbjct: 120 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIH----LEGR 175
Query: 72 TLVETFD--NLEICVG---DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIF 124
FD ++ VG D ++ G+D L M+ E+C + + R+G+G+ G+P F
Sbjct: 176 CGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKF 233
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 35 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 94
Query: 98 PLMEMGEECQIEITARFGYGDKG 120
M+ GE C + + YG G
Sbjct: 95 ATMKRGEICHLLCKPEYAYGSAG 117
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 48 GEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMG 103
G+ T P++G CV+ G L++ D+ + + +G E++ G + M +G
Sbjct: 10 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 69
Query: 104 EECQIEITARFGYGDKGEP 122
+ ++ T YG G P
Sbjct: 70 QRAKLTCTPDVAYGATGHP 88
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 77 FDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIFK 125
++ LE VG+ +L+ G + + ME+G+E ++I A YG++ E + +
Sbjct: 42 YEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQ 90
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 53 RPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQI 108
+ ++GD+ + GKLED D+ + +G +++ G D L M GE+ ++
Sbjct: 5 KSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL 64
Query: 109 EITARFGYGDKGEP 122
I + GYG++G P
Sbjct: 65 VIPSELGYGERGAP 78
>pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z01|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z02|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|B Chain B, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|C Chain C, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|D Chain D, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|E Chain E, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
pdb|1Z03|F Chain F, 2-Oxoquinoline 8-Monooxygenase Component: Active Site
Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION
Length = 446
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 77 FDNLEICV-GDLELVHGMDYVLPL 99
FDN I V D +VH MD+VLPL
Sbjct: 217 FDNAHILVHKDNTIVHAMDWVLPL 240
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 53 RPQRGDLCVISGFGKLEDD-TLVETFDN------LEICVGDLELVHGMDYVLPLMEMGEE 105
+ + GDL ++ G LE D +L + + +G LE + G D L M +GE+
Sbjct: 28 KTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK 87
Query: 106 CQIEITARFGYGDKGE 121
++ I GYG +G+
Sbjct: 88 RKLIIPPALGYGKEGK 103
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 23 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 82
Query: 98 PLMEMGEECQIEITARFGYGDKGE 121
M+ GE C + + YG G
Sbjct: 83 ATMKKGEICHLLCKPEYAYGSAGS 106
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 23 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 82
Query: 98 PLMEMGEECQIEITARFGYGDKGE 121
M+ GE C + + YG G
Sbjct: 83 ATMKKGEICHLLCKPEYAYGSAGS 106
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 39 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 98
Query: 98 PLMEMGEECQIEITARFGYGDKGE 121
M+ GE C + + YG G
Sbjct: 99 ATMKKGEICHLLCKPEYAYGSAGS 122
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 42 KKITKHGEPDTRPQRGDLCVISGFGKLED----DTLVETFDNLEICVGDLELVHGMDYVL 97
K + + G + P GD + GKL + D+ + + +G +++ D +
Sbjct: 39 KIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGV 98
Query: 98 PLMEMGEECQIEITARFGYGDKGE 121
M+ GE C + + YG G
Sbjct: 99 ATMKKGEICHLLCKPEYAYGSAGS 122
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 17 PVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPD---TRPQRGDLCVISGFGKLE-DDT 72
P+ E+ ++D W+++ GH ++++ + EPD +R D+ V GF + E +D
Sbjct: 253 PIKRGSLEQIMKDRWMNV---GHEEEELKPYTEPDPDFNDTKRIDIMVTMGFARDEINDA 309
Query: 73 LVE 75
L+
Sbjct: 310 LIN 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,561,811
Number of Sequences: 62578
Number of extensions: 192994
Number of successful extensions: 528
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 53
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)