RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18101
(126 letters)
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 83.1 bits (206), Expect = 5e-22
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 28 EDEWVDILGSGHIKKKITKHGE-PDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGD 86
+EW+DILG+G ++KK G +RP +G + + LE+ T V+ L +GD
Sbjct: 3 PEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGD 62
Query: 87 LELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+++ +D +PLM++GE + +++ YG +G
Sbjct: 63 CDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS 98
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 82.8 bits (205), Expect = 1e-21
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 25 EEVEDEWVDILGSGHIKKKITKHG-EPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEIC 83
+EW+DILG+G ++KK G +RP +G + + LE+ T V+ L
Sbjct: 4 GSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFT 63
Query: 84 VGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+GD +++ +D +PLM++GE + +++ YG +G
Sbjct: 64 LGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR 102
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 82.1 bits (203), Expect = 3e-21
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 10 KADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHG-EPDTRPQRGDLCVISGFGKL 68
A + P+ +EW+DILG+G ++KK G +RP +G + + L
Sbjct: 15 LAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74
Query: 69 EDDTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKG 120
E+ T V+ L +GD +++ +D +PLM++GE + +++ YG +G
Sbjct: 75 ENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 80.7 bits (199), Expect = 2e-19
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 23 PEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEI 82
+ + G I ++I GE +P G + ++ G +D + EI
Sbjct: 10 HSSGLVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEI 69
Query: 83 CVG-DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIFK 125
G +L+L +G++ + ME GE + + + +G G+ F+
Sbjct: 70 GEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQ 113
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 77.0 bits (189), Expect = 6e-18
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 9 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 68
+ EE+P + E + + K + + G + P GD + GKL
Sbjct: 6 GAKNNEESPTATVAEQGE----DITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61
Query: 69 EDDTLVET----FDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ ++ + +G +++ D + M+ GE C + + YG G
Sbjct: 62 SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSL 119
Score = 52.0 bits (124), Expect = 4e-09
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 17 PVIPDK-----PEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDD 71
P IP E ++ + D+ G I ++ + GE + P G I G+
Sbjct: 120 PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGR 179
Query: 72 TLVETFDNLEICVG-DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ G D ++ G+D L M+ E+C + + R+G+G+ G+P
Sbjct: 180 MFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP 231
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 68.5 bits (167), Expect = 6e-15
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 9 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 68
A V P +V+ E + + K+I K G ++P + C +
Sbjct: 22 GSAVVHSEPSQEGNVPPKVDSEAE--VLDEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWT 78
Query: 69 EDDTLVETFD-------NLEICVGDLELV-HGMDYVLPLMEMGEECQIEITARFGYGDKG 120
++ F+ +E+ +G + G+ + M+ GE + + YG +G
Sbjct: 79 KNSQHK--FEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEG 136
Query: 121 EP 122
Sbjct: 137 NF 138
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 54.1 bits (130), Expect = 6e-10
Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 7 IVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFG 66
++ E+ E D + K I + G P GD + G
Sbjct: 22 TAEEMKATESGAQSAPLPMEGVDISPK--QDEGVLKVIKREGTGTEMPMIGDRVFVHYTG 79
Query: 67 KLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDK 119
L D T FD+ +G E++ D + M++GE C I + YG
Sbjct: 80 WLLDGT---KFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSA 136
Query: 120 GEP 122
G P
Sbjct: 137 GSP 139
Score = 42.9 bits (101), Expect = 6e-06
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 26 EVE-----DEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNL 80
EVE E + G I ++I GE +P G + ++ G +D +
Sbjct: 151 EVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF 210
Query: 81 EICVGDL-ELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
EI G+ +L +G++ + ME GE + + + +G G+
Sbjct: 211 EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE 253
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 52.1 bits (125), Expect = 3e-09
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 39 HIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELVHGMDYVLP 98
I KKI K G+ P+ D + +LED T+V + +E V D L + +
Sbjct: 128 GIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVK 187
Query: 99 LMEMGEECQIEITARFGYGDKGEP 122
M+ GE+ + + ++G+G+ G P
Sbjct: 188 TMKKGEKVLLAVKPQYGFGEMGRP 211
Score = 50.6 bits (121), Expect = 1e-08
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 22 KPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-- 79
K EE E +G +KKK+ K GE P+ GD + G L D FD+
Sbjct: 1 KVGEENE------IGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGK---KFDSSR 51
Query: 80 -----LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ +G +++ G D + M+ GE I YG+ G P
Sbjct: 52 DRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSP 99
Score = 46.7 bits (111), Expect = 3e-07
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 38 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLED-----DTLVETFDNLEICVGDLELVHG 92
I KK+ K E RP G + + GKL+D + + E + ++ G
Sbjct: 244 KKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEG 303
Query: 93 MDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+D + M+ GE + I + YG
Sbjct: 304 LDRAVLNMKKGEVALVTIPPEYAYGSTESK 333
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 49.6 bits (119), Expect = 7e-09
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 10/116 (8%)
Query: 14 EENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTL 73
E + E + +DI G + K + + G D ++ G LE
Sbjct: 2 EGDDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMD- 59
Query: 74 VETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
FD+ + +G+ + GM+ L M GE + + YG G P
Sbjct: 60 -RPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP 114
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 48.7 bits (116), Expect = 3e-08
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 9 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 68
A V P +V+ E ++L + K+I K G P + C +
Sbjct: 22 GSAVVHSEPSQEGNVPPKVDSE-AEVLDEK-VSKQIIKEGHGSK-PSKYSTCFLHYRAWT 78
Query: 69 EDDTLVETFDN-------LEICVGDLELV-HGMDYVLPLMEMGEECQIEITARFGYGDKG 120
++ F++ +E+ +G + G+ + M+ GE + + YG +G
Sbjct: 79 KNSQHK--FEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEG 136
Query: 121 EP 122
Sbjct: 137 NF 138
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 46.1 bits (110), Expect = 1e-07
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTR--PQRGDLCVISGFGKLEDDTLVETFDN-- 79
E E E V++ G + K I K G+ P++G+ + GKLE V FD+
Sbjct: 2 TTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKV--FDSSF 59
Query: 80 -----LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ + E++ G D + M E+C + I + +GYGD+G
Sbjct: 60 DRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG 107
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 44.6 bits (106), Expect = 5e-07
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 28 EDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------L 80
E + G + K I K G+ +P G + G LE+ T FD+
Sbjct: 4 EKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGT---KFDSSRDRGDQF 60
Query: 81 EICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+G ++ G D + M GE + I + +GYGD G P
Sbjct: 61 SFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP 102
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 43.7 bits (104), Expect = 8e-07
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHG 92
++ + G+ T P+RG CV+ G LED FD+ + +G E++ G
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGK---KFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 93 MDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ + M +G+ ++ I+ + YG G P
Sbjct: 59 WEEGVAQMSVGQRAKLTISPDYAYGATGHP 88
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 44.2 bits (105), Expect = 8e-07
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 10 KADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLE 69
+ +N + E + + K + + G + P GD + GKL
Sbjct: 7 TDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS 66
Query: 70 DDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ FD+ +G +++ D + M+ GE C + + YG G
Sbjct: 67 NGK---KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL 123
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 43.4 bits (103), Expect = 1e-06
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 79
E + + + + ++KK+ G+ T+PQ G + G+ D FD+
Sbjct: 11 TLEAQTQGPGSMSAQ-LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGK---QFDSSRSR 66
Query: 80 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ +G E++ G D + M +GE+ I + YG++G P
Sbjct: 67 GKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP 112
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 43.0 bits (102), Expect = 1e-06
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 37 SGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLEL 89
G++K G+ T P+ GDL I G LE+ FD+ + +G ++
Sbjct: 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQ---KFDSSVDRGSPFQCNIGVGQV 61
Query: 90 VHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ G D +P + +GE+ ++ I + YG +G P
Sbjct: 62 IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP 94
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 43.0 bits (102), Expect = 1e-06
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 22 KPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-- 79
+ E + + K + + G + P GD + GKL + FD+
Sbjct: 3 PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK---KFDSSH 59
Query: 80 -----LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+G +++ D + M+ GE C + + YG G
Sbjct: 60 DRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL 107
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 42.3 bits (100), Expect = 3e-06
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN--------------LEICVG 85
K I K G+ P++GD+ G L D T FD L VG
Sbjct: 6 YTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGT---VFDTNIQTSSKKKKNAKPLSFKVG 62
Query: 86 DLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+++ G D L M GE+ ++EI + YG KG+P
Sbjct: 63 VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP 99
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 34.8 bits (81), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 52 TRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGE 104
+ ++GD+ + GKLED T FD+ +G +++ G D L M GE
Sbjct: 4 IKSRKGDVLHMHYTGKLEDGT---EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 105 ECQIEITARFGYGDKGEP 122
+ ++ I + GYG++G P
Sbjct: 61 KRKLVIPSELGYGERGAP 78
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 34.2 bits (79), Expect = 0.003
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 40 IKKKITKHGEPDTR-PQRGDLCVISGFGKLEDDTLVETFDN---------LEICVGDLEL 89
+K ++ + R + GDL ++ G LE D F + + +G LE
Sbjct: 14 VKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG--SLFHSTHKHNNGQPIWFTLGILEA 71
Query: 90 VHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ G D L M +GE+ ++ I GYG +G+
Sbjct: 72 LKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKG 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.8 bits (80), Expect = 0.003
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 4 PFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVIS 63
+ + D+E+N +I E+ V SG +K + G + G +
Sbjct: 72 ADQTPEDLDMEDNDIIEAHREQIGGST-VVTTESG-LKYEDLTEGSGAE-ARAGQTVSVH 128
Query: 64 GFGKLEDDTLVETFDN-------LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGY 116
G L D FD+ +G ++ G D + M++G ++ I + GY
Sbjct: 129 YTGWLTDGQ---KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGY 185
Query: 117 GDKGEP 122
G +G
Sbjct: 186 GARGAA 191
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 32.4 bits (74), Expect = 0.017
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 79
E++ L SG + + G P D C + G+L D T FD+
Sbjct: 24 EQKAAQPDAVKLPSG-LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGT---VFDSSRER 79
Query: 80 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
E++ G L LM G+ ++ I YG G
Sbjct: 80 GKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG 123
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 31.1 bits (71), Expect = 0.049
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 79
V SG +K + G + G + G L D FD+
Sbjct: 15 VPRGSHMTVVTTESG-LKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQ---KFDSSKDR 69
Query: 80 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+G ++ G D + M++G ++ I + GYG +G
Sbjct: 70 NDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.19
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 19/120 (15%)
Query: 9 DKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKL 68
D V E+ + + ++V+D IL I I + + R L F L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLR--L-----FWTL 71
Query: 69 ED--DTLVETFDNLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEPIFKT 126
+ +V+ F +E V ++Y + + E + Y ++ + ++
Sbjct: 72 LSKQEEMVQKF---------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Score = 26.4 bits (57), Expect = 3.4
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 24/109 (22%)
Query: 6 EIVDKADVEENP-----VIPDKPEEEVEDEWVDILGSGH--IKKKITKHGEPDTRPQRGD 58
I+ D + K EE V+ ++L + + I E +P
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQ-RQPSMMT 109
Query: 59 LCVISGFGKLEDDTLV---------ETFDNLEICVGDLE-----LVHGM 93
I +L +D V + + L + +L L+ G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 28.5 bits (64), Expect = 0.55
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 79
E V L G I G +P + G+L D FD
Sbjct: 104 AGEKAKPGVKELADG-ILMTELTPGT-GPKPDANGRVEVRYVGRLPDGK---IFDQSTQP 158
Query: 80 LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ ++ G L M G + ++ I + YG +G
Sbjct: 159 QWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAG 199
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 28.0 bits (63), Expect = 0.57
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 66 GKLEDDTLVE-TFDN---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
KL+D T E T +N +GD L G++ L +++G++ + +G
Sbjct: 37 LKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGV 93
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 28.3 bits (64), Expect = 0.60
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 21/60 (35%)
Query: 50 PDTRPQRGDLCVISGFGKLED----DTL----VETFDNLE-------------ICVGDLE 88
P G+ C++SG+G L + L V C G +
Sbjct: 108 ASQCPTAGNSCLVSGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQ 167
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 27.7 bits (62), Expect = 0.80
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 24 EEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN---- 79
E V +L SG ++ K+ G +P + D + G+L D T FD+
Sbjct: 93 TENKNKPGVVVLPSG-LQYKVINSGN-GVKPGKSDTVTVEYTGRLIDGT---VFDSTEKT 147
Query: 80 ---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
V +++ G L LM G +I + + YG +
Sbjct: 148 GKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG 191
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 27.8 bits (62), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
+ DT G + +SGFG +E+
Sbjct: 206 DNDTFYDLGLMGYVSGFGVMEEKI 229
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 27.5 bits (61), Expect = 1.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
+ DT G + +SGFG +E+
Sbjct: 274 DNDTFYDLGLMGYVSGFGVMEEKI 297
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 27.6 bits (61), Expect = 1.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
Q D C++SG+G+ +D+
Sbjct: 438 WSPYLFQPNDTCIVSGWGREKDN 460
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 26.6 bits (59), Expect = 1.5
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 32 VDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICV 84
+ SG + G +G L GKLE+ FD+ L +
Sbjct: 7 FSVSPSG-LAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGK---VFDSSYNRGKPLTFRI 61
Query: 85 GDLELVHGMD------YVLPLMEMGEECQIEITARFGYGDKG 120
G E++ G D +P M G + + I YGD+G
Sbjct: 62 GVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRG 103
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 27.1 bits (61), Expect = 1.6
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 21/60 (35%)
Query: 50 PDTRPQRGDLCVISGFGKLED----DTL----VETFDNLE-------------ICVGDLE 88
C I G+GK D DT+ + E +C GD +
Sbjct: 107 ERDCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEK 166
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 27.0 bits (60), Expect = 1.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 66 GKLEDDTLVETFDN---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
+ ED LV+ L+ G L+ G++ L E+G++ + + A YG
Sbjct: 15 VRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 26.9 bits (60), Expect = 1.7
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDTLVETFDNL 80
G C ++G+G + + T L
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPL 144
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 26.8 bits (60), Expect = 1.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
+ DT G + +SGFG +E+
Sbjct: 117 DNDTFYDLGLMGYVSGFGVMEEKI 140
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 26.8 bits (60), Expect = 1.7
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 23/62 (37%)
Query: 50 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 86
P P+ G C+ SG+G +E D L ++ N E +CVG
Sbjct: 119 PTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGH 178
Query: 87 LE 88
LE
Sbjct: 179 LE 180
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 26.9 bits (60), Expect = 1.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P+ Q G + ++SG+GK
Sbjct: 126 PEGPQQEGAMVIVSGWGKQFLQ 147
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 26.7 bits (60), Expect = 1.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P T G + +G+G D
Sbjct: 109 PSTDVGVGTVVTPTGWGLPSDS 130
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 14/54 (25%)
Query: 49 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNLE-----ICVGDLE 88
+ + G C ++G+G V + +C G L
Sbjct: 112 LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLT 165
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 26.9 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
EP + G C I+G+G L+++
Sbjct: 152 EPGSTFPAGHKCQIAGWGHLDEN 174
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 26.6 bits (59), Expect = 2.2
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDTLVET 76
E ++ + D+ SG+G + L
Sbjct: 274 EAESFMRTDDIGTASGWGLTQRGFLARN 301
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 26.5 bits (59), Expect = 2.2
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 66 GKLEDDTLVETFDN---LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
+ ED LV+ L+ G L+ G++ L E+G++ + + A YG
Sbjct: 15 VRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ 70
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 26.4 bits (59), Expect = 2.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
+ P+ G C+ISG+G +
Sbjct: 110 ANLCPKVGQKCIISGWGTVTSP 131
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 26.4 bits (59), Expect = 2.4
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 23/62 (37%)
Query: 50 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 86
P P+ G C SG+G + TL + N + +C
Sbjct: 118 PTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATH 177
Query: 87 LE 88
+
Sbjct: 178 RD 179
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 26.6 bits (59), Expect = 2.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 86 DLELVHGMDYV--LPLMEMGEECQIEITARFGYGDKGEPIFK 125
+L L H DY+ L E + ++ G P+
Sbjct: 56 ELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSY 97
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 26.3 bits (59), Expect = 2.6
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 49 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNL----EICVGDLE 88
R G C+ G+G L L V +L +C
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRG 163
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
EP + G C I+G+G L+++
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDEN 139
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 26.0 bits (58), Expect = 3.2
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 49 EPDTRPQRGDLCVISGFGKLED-----DTL----VETFDNL----EICVGDLE 88
+ D G C+ G+G++ L V IC
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPR 166
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 26.1 bits (58), Expect = 3.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
PQ G C I+GFGK
Sbjct: 147 SMYNDPQFGTSCEITGFGKENST 169
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 26.0 bits (58), Expect = 3.8
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 23/62 (37%)
Query: 50 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 86
P P+ G C+ SG+G L + N + +C G+
Sbjct: 116 PTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGE 175
Query: 87 LE 88
+E
Sbjct: 176 ME 177
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 26.1 bits (58), Expect = 3.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
PQ G C I+GFGK
Sbjct: 124 SMYNDPQFGTSCEITGFGKENST 146
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 25.6 bits (57), Expect = 4.1
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 23/62 (37%)
Query: 50 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 86
P P+ G C+ SG+G D L ++ N + +C G+
Sbjct: 121 PTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGE 180
Query: 87 LE 88
++
Sbjct: 181 MD 182
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 25.9 bits (57), Expect = 4.2
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 32 VDILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN-------LEICV 84
V +G + ++ + G+ P+ D V++ G L D FDN L +
Sbjct: 116 VKTSSTG-LVYQVVEAGK-GEAPKDSDTVVVNYKGTLIDGK---EFDNSYTRGEPLSFRL 170
Query: 85 GDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
++ G L ++ G + ++ I YG G P
Sbjct: 171 D--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP 206
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 25.4 bits (56), Expect = 4.3
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 66 GKLEDDTLVETFDN-----------------LEICVGDLELVHGMDYVLPLMEMGEECQI 108
GKLE + +T LE VG+ +L+ G + + ME+G+E +
Sbjct: 14 GKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV 73
Query: 109 EITARFGYGDKGE 121
+I A YG++ E
Sbjct: 74 KIPAEKAYGNRNE 86
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 25.9 bits (57), Expect = 4.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDTLVET 76
D GDL +ISG+G+ E
Sbjct: 199 SSDYNLMDGDLGLISGWGRTEKRDRAVR 226
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 25.7 bits (57), Expect = 4.4
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
D + C +SG+GK E
Sbjct: 123 PADLQLPDWTECELSGYGKHEAL 145
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 25.6 bits (57), Expect = 4.4
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P G C++SG+G +
Sbjct: 109 SSHCPSAGTKCLVSGWGTTKSP 130
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 25.6 bits (57), Expect = 4.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
+ Q GD+ ++GFG L++D
Sbjct: 109 DASYEFQPGDVMFVTGFGALKND 131
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 25.6 bits (57), Expect = 4.9
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
C ++G+G ++
Sbjct: 116 SKGDTSTIYTNCWVTGWGFSKEK 138
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 25.6 bits (57), Expect = 5.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P P G C+ISG+G
Sbjct: 110 PTAPPATGTKCLISGWGNTASS 131
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 25.7 bits (57), Expect = 5.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
P+ C I+G+G+ +
Sbjct: 125 SPNYVVADRTECFITGWGETQGT 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.3
Identities = 5/16 (31%), Positives = 7/16 (43%), Gaps = 3/16 (18%)
Query: 42 KKIT---KHGEPDTRP 54
KK+ K D+ P
Sbjct: 23 KKLQASLKLYADDSAP 38
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 25.2 bits (56), Expect = 5.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
E + G C I+G+G +
Sbjct: 115 EENQVFPPGRNCSIAGWGTVVYQ 137
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 25.2 bits (56), Expect = 5.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 50 PDTRPQRGDLCVISGFGKLEDDTL 73
P G C I G+GK+ T
Sbjct: 110 PSRSRGVGSRCRIMGWGKISTTTY 133
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 25.3 bits (56), Expect = 5.9
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 23/62 (37%)
Query: 50 PDTRPQRGDLCVISGFGKLED------DTL----VETFDNLE-------------ICVGD 86
P P G C SG+G +E L + N +C G
Sbjct: 118 PTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGR 177
Query: 87 LE 88
Sbjct: 178 WT 179
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 25.2 bits (56), Expect = 6.0
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P P+ G C+ SG+G +
Sbjct: 118 PTKEPKPGSKCLASGWGSITPT 139
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 25.6 bits (56), Expect = 6.2
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
R C ++G+G +
Sbjct: 503 SKGDRNVIYTDCWVTGWGYRKLR 525
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 25.2 bits (56), Expect = 6.3
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
R C ++G+G +
Sbjct: 116 SKGERNVIYTDCWVTGWGYRKLRD 139
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 25.5 bits (56), Expect = 6.4
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
G +C ++G+G +
Sbjct: 235 AAGQALVDGKICTVTGWGNTQYYG 258
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 25.3 bits (56), Expect = 6.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDT 72
+ G ++G+G +
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGG 143
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 25.2 bits (55), Expect = 6.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 32 VDILGSGHIKKKIT 45
+ IL G + KK+T
Sbjct: 183 LKILADGELSKKLT 196
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 24.9 bits (55), Expect = 7.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDTLVETFDNL 80
G C ++G+G +++D + L
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPL 145
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 24.9 bits (55), Expect = 7.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
T +C ++G+G+L+ +
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTN 138
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 24.9 bits (55), Expect = 7.8
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
+ + C ++G+G+L +
Sbjct: 128 SEGSLLPQDYPCFVTGWGRLYTN 150
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 25.4 bits (55), Expect = 7.8
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
P+ C I+G+G+ +
Sbjct: 669 SPNYVVADRTECFITGWGETQGT 691
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 24.9 bits (55), Expect = 8.2
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDDTLVET 76
E ++ + D+ SG+G + L
Sbjct: 113 EAESFMRTDDIGTASGWGLTQRGFLARN 140
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 24.6 bits (54), Expect = 8.5
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 80 LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
+ I G+ +++ G+D + M++GEE ++ + +G
Sbjct: 44 VAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGK 82
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 24.8 bits (55), Expect = 8.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 50 PDTRPQRGDLCVISGFGKLEDD 71
P G C +SG+G
Sbjct: 105 PSRCEPPGTTCTVSGWGTTTSP 126
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 24.9 bits (55), Expect = 8.7
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 49 EPDTRPQRGDLCVISGFGKLEDD 71
C ISG+G+L
Sbjct: 116 PAGDILPNEAPCYISGWGRLYTG 138
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L*
3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L
1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ...
Length = 143
Score = 24.4 bits (54), Expect = 9.2
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 32 VDILGSGHIKKKIT 45
++ +G + +T
Sbjct: 107 AKVILAGEVTTPVT 120
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 24.8 bits (55), Expect = 9.3
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 21/61 (34%)
Query: 49 EPDTRPQRGDLCVISGFGKLED----DTL----VETFDN-------------LEICVGDL 87
+ G LC ++G+G++ DTL + + +ICVGD
Sbjct: 111 RAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDR 170
Query: 88 E 88
Sbjct: 171 R 171
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 24.5 bits (54), Expect = 9.7
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 75 ETFDN--LEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
E D L G L+ G++ L E GE Q + A YG
Sbjct: 20 EVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGP 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.143 0.433
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,144,199
Number of extensions: 127160
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 111
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)