RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18101
(126 letters)
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 48.9 bits (116), Expect = 3e-09
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 33 DILGSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVGDLELV-H 91
D+L G I ++ + GE + P G I G+ + G+ +
Sbjct: 3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIPI 62
Query: 92 GMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
G+D L M+ E+C + + R+G+G+ G+P
Sbjct: 63 GIDKALEKMQREEQCILHLGPRYGFGEAGKP 93
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 46.6 bits (110), Expect = 3e-08
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 30 EWVDIL--GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLE----IC 83
E VDI + K I + G P GD + G L D T ++ + +
Sbjct: 1 EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD 60
Query: 84 VGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+G E++ D + M++GE C I + YG G P
Sbjct: 61 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP 99
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 45.5 bits (107), Expect = 7e-08
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 36 GSGHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDN----LEICVGDLELVH 91
G + K I K G+ +P G + G LE+ T ++ + +G ++
Sbjct: 8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67
Query: 92 GMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
G D + M GE + I + +GYGD G P
Sbjct: 68 GWDLGVATMTKGEVAEFTIRSDYGYGDAGSP 98
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 40.1 bits (93), Expect = 6e-06
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 38 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTL----VETFDNLEICVGDLELVHGM 93
+ K + + G + P GD + GKL + + + +G +++
Sbjct: 4 RGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAW 63
Query: 94 DYVLPLMEMGEECQIEITARFGYGDKGEP 122
D + M+ GE C + + YG G
Sbjct: 64 DIGVATMKKGEICHLLCKPEYAYGATGSL 92
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 39.4 bits (91), Expect = 1e-05
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 40 IKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVET-----------FDNLEICVGDLE 88
K + K G+ P++GD+ G L+D T+ +T L VG +
Sbjct: 3 YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK 62
Query: 89 LVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
++ G D L M GE+ ++EI + YG KG+P
Sbjct: 63 VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP 96
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 38.6 bits (89), Expect = 2e-05
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 38 GHIKKKITKHGEPDTRPQRGDLCVISGFGKLEDDTLVETFDNLEICVG-DLELVHGMDYV 96
G I ++I GE +P G + ++ G +D + EI G +L+L +G++
Sbjct: 8 GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 67
Query: 97 LPLMEMGEECQIEITARFGYGDKGEP 122
+ ME GE + + + +G G+
Sbjct: 68 IQRMEKGEHSIVYLKPSYAFGSVGKE 93
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 33.3 bits (75), Expect = 0.004
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 52 TRPQRGDLCVISGFGKLEDDTLVETFDNLEIC--VGDLELVHGMDYVLPLMEMGEECQIE 109
+P + D + G+L D T+ ++ + +++ G L LM G +I
Sbjct: 111 VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIY 170
Query: 110 ITARFGYGDKGEP 122
+ + YG +
Sbjct: 171 VPSGLAYGPRSVG 183
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 32.5 bits (73), Expect = 0.008
Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 3/124 (2%)
Query: 1 MFHPFEIVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKITKHGEPDTRPQRGDLC 60
+ + + D +N + E+ E S + ++ + G+ + P+ D
Sbjct: 70 VKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA-PKDSDTV 128
Query: 61 VISGFGKLEDDTLVETFD--NLEICVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGD 118
V++ G L D + + ++ G L ++ G + ++ I YG
Sbjct: 129 VVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGK 188
Query: 119 KGEP 122
G P
Sbjct: 189 AGVP 192
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 29.2 bits (65), Expect = 0.043
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 53 RPQRGDLCVISGFGKLEDDTLVETFD-NLEICVGDLELVHGMDYVLPLMEMGEECQIEIT 111
+ GD+ +I G +++ L N E+ +G + G + L M++ ++ + +T
Sbjct: 1 KLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALT 60
Query: 112 ARFGYGDKGEP 122
Y K
Sbjct: 61 FPSDYHVKELQ 71
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 26.0 bits (56), Expect = 1.2
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 83 CVGDLELVHGMDYVLPLMEMGEECQIEITARFGYGDKGEP 122
+ + +P M G + + I YGD+G
Sbjct: 62 VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAG 101
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 115
Score = 24.3 bits (53), Expect = 3.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 7 IVDKADVEENPVIPDKPEEEVEDEWVDILGSGHIKKKIT 45
I A +E V+P K +LGSG ++K +T
Sbjct: 48 IERYAQEDETVVVPGK-----------VLGSGVLQKDVT 75
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 24.8 bits (54), Expect = 3.7
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 77 FDNLEICV-GDLELVHGMDYVLPL-----MEMGEECQIEITARFG-------YGDKGEPI 123
FD I + D LV D LPL + ++ ++ G G+ G P+
Sbjct: 37 FDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPV 96
Query: 124 FK 125
F+
Sbjct: 97 FE 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.143 0.433
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,858
Number of extensions: 24902
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 18
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)