Query psy18105
Match_columns 333
No_of_seqs 136 out of 488
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:40:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zpa_A Uncharacterized protein 100.0 4.3E-42 1.5E-46 358.2 16.4 201 29-321 56-262 (671)
2 3upu_A ATP-dependent DNA helic 97.3 0.00046 1.6E-08 68.2 8.5 48 255-302 47-94 (459)
3 2zpa_A Uncharacterized protein 97.3 0.00012 4E-09 76.8 3.8 23 207-229 196-218 (671)
4 4b3f_X DNA-binding protein smu 96.7 0.0029 9.9E-08 65.2 8.1 48 255-303 207-254 (646)
5 2gk6_A Regulator of nonsense t 95.9 0.013 4.4E-07 60.3 7.2 50 255-304 197-246 (624)
6 3e1s_A Exodeoxyribonuclease V, 95.5 0.016 5.5E-07 59.3 6.5 47 255-302 206-252 (574)
7 2wjy_A Regulator of nonsense t 95.5 0.021 7.2E-07 60.8 7.3 50 255-304 373-422 (800)
8 3dkp_A Probable ATP-dependent 95.2 0.072 2.5E-06 47.0 8.9 55 256-310 69-126 (245)
9 1w36_D RECD, exodeoxyribonucle 95.2 0.033 1.1E-06 57.2 7.3 50 255-304 166-218 (608)
10 2xzl_A ATP-dependent helicase 95.1 0.023 7.9E-07 60.5 6.1 50 255-304 377-426 (802)
11 3fe2_A Probable ATP-dependent 95.0 0.094 3.2E-06 46.4 8.9 55 256-310 69-130 (242)
12 3ber_A Probable ATP-dependent 94.8 0.11 3.9E-06 46.5 9.1 52 256-307 83-136 (249)
13 3ly5_A ATP-dependent RNA helic 94.8 0.08 2.7E-06 47.9 8.1 54 256-309 94-153 (262)
14 2gxq_A Heat resistant RNA depe 94.7 0.1 3.5E-06 44.4 8.1 51 256-306 41-96 (207)
15 1rif_A DAR protein, DNA helica 94.5 0.13 4.3E-06 46.7 8.8 49 256-304 131-179 (282)
16 2pl3_A Probable ATP-dependent 94.5 0.14 4.9E-06 44.8 8.7 51 256-306 65-121 (236)
17 1qde_A EIF4A, translation init 94.3 0.12 4E-06 44.8 7.6 51 256-306 54-106 (224)
18 3ec2_A DNA replication protein 94.2 0.051 1.8E-06 45.8 5.0 36 255-290 40-76 (180)
19 1q0u_A Bstdead; DEAD protein, 94.2 0.16 5.6E-06 44.0 8.3 51 256-306 44-96 (219)
20 3iuy_A Probable ATP-dependent 94.1 0.18 6.1E-06 43.9 8.4 49 256-304 60-116 (228)
21 1vec_A ATP-dependent RNA helic 93.9 0.23 8E-06 42.2 8.8 52 256-307 43-96 (206)
22 1gm5_A RECG; helicase, replica 93.9 0.14 4.9E-06 54.3 8.9 54 256-310 392-445 (780)
23 3eiq_A Eukaryotic initiation f 93.9 0.19 6.3E-06 47.2 8.7 55 256-310 80-136 (414)
24 3bor_A Human initiation factor 93.9 0.13 4.5E-06 45.4 7.2 52 256-307 70-123 (237)
25 1t6n_A Probable ATP-dependent 93.8 0.16 5.5E-06 43.9 7.6 49 256-304 54-104 (220)
26 3pey_A ATP-dependent RNA helic 93.8 0.17 5.8E-06 46.8 8.3 51 256-306 47-99 (395)
27 3l9o_A ATP-dependent RNA helic 93.8 0.097 3.3E-06 57.6 7.5 54 256-310 202-255 (1108)
28 1wrb_A DJVLGB; RNA helicase, D 93.7 0.27 9.3E-06 43.5 9.1 50 256-305 63-123 (253)
29 3oiy_A Reverse gyrase helicase 93.7 0.14 4.8E-06 48.7 7.5 48 256-304 39-86 (414)
30 3llm_A ATP-dependent RNA helic 93.6 0.11 3.8E-06 46.0 6.2 53 255-307 78-134 (235)
31 1hv8_A Putative ATP-dependent 93.4 0.21 7.2E-06 45.6 8.1 51 256-306 47-98 (367)
32 1s2m_A Putative ATP-dependent 93.3 0.21 7.3E-06 46.7 8.1 54 256-309 61-116 (400)
33 2i4i_A ATP-dependent RNA helic 93.0 0.25 8.7E-06 46.4 8.1 24 283-306 102-125 (417)
34 2v1u_A Cell division control p 93.0 0.14 4.7E-06 47.5 6.2 49 253-301 44-98 (387)
35 2oca_A DAR protein, ATP-depend 92.8 0.29 9.9E-06 47.9 8.5 49 256-304 131-179 (510)
36 2w58_A DNAI, primosome compone 92.8 0.084 2.9E-06 45.2 4.0 37 254-290 55-91 (202)
37 3tbk_A RIG-I helicase domain; 92.7 0.42 1.4E-05 46.4 9.4 52 256-307 22-77 (555)
38 3fht_A ATP-dependent RNA helic 92.7 0.3 1E-05 45.6 7.9 50 256-305 67-118 (412)
39 2db3_A ATP-dependent RNA helic 92.7 0.37 1.3E-05 46.6 8.9 52 256-307 96-154 (434)
40 2qby_A CDC6 homolog 1, cell di 92.6 0.12 4E-06 47.8 5.0 42 253-294 45-89 (386)
41 2oxc_A Probable ATP-dependent 92.4 0.42 1.4E-05 41.8 8.2 49 256-304 64-114 (230)
42 2kjq_A DNAA-related protein; s 92.4 0.14 4.7E-06 42.8 4.7 38 255-292 38-75 (149)
43 2xgj_A ATP-dependent RNA helic 92.3 0.26 8.8E-06 53.8 7.9 52 256-308 104-155 (1010)
44 4a2p_A RIG-I, retinoic acid in 92.3 0.52 1.8E-05 45.9 9.5 52 256-307 25-80 (556)
45 1fnn_A CDC6P, cell division co 92.2 0.2 7E-06 46.5 6.2 49 255-303 46-95 (389)
46 3bos_A Putative DNA replicatio 92.2 0.18 6E-06 43.4 5.4 39 253-291 52-90 (242)
47 3cpe_A Terminase, DNA packagin 92.1 0.2 6.7E-06 51.1 6.4 57 254-310 179-236 (592)
48 2va8_A SSO2462, SKI2-type heli 92.1 0.24 8.1E-06 51.1 7.1 55 255-310 48-102 (715)
49 2z0m_A 337AA long hypothetical 91.8 0.62 2.1E-05 42.0 8.8 47 256-306 34-80 (337)
50 1fuu_A Yeast initiation factor 91.8 0.31 1.1E-05 45.2 6.9 52 256-307 61-114 (394)
51 2j0s_A ATP-dependent RNA helic 91.8 0.46 1.6E-05 44.7 8.1 49 256-304 77-127 (410)
52 2fz4_A DNA repair protein RAD2 91.7 0.36 1.2E-05 43.1 7.0 45 256-304 111-155 (237)
53 2orw_A Thymidine kinase; TMTK, 91.6 0.15 5E-06 44.2 4.1 37 255-293 5-42 (184)
54 3sqw_A ATP-dependent RNA helic 91.5 0.49 1.7E-05 47.5 8.5 49 256-304 63-117 (579)
55 2o0j_A Terminase, DNA packagin 91.4 0.26 8.8E-06 48.2 6.1 68 240-310 168-236 (385)
56 2eyq_A TRCF, transcription-rep 91.3 0.57 2E-05 51.7 9.4 52 256-308 627-678 (1151)
57 3i5x_A ATP-dependent RNA helic 91.2 0.55 1.9E-05 46.5 8.4 50 256-305 114-169 (563)
58 2xau_A PRE-mRNA-splicing facto 91.2 0.32 1.1E-05 51.4 7.0 52 255-306 111-164 (773)
59 2qby_B CDC6 homolog 3, cell di 91.1 0.19 6.6E-06 46.8 4.7 41 253-293 45-93 (384)
60 3fmp_B ATP-dependent RNA helic 91.1 0.36 1.2E-05 46.9 6.8 49 256-304 134-184 (479)
61 2zj8_A DNA helicase, putative 91.1 0.23 8E-06 51.3 5.7 54 255-310 41-95 (720)
62 4a4z_A Antiviral helicase SKI2 90.9 0.85 2.9E-05 49.6 10.1 50 256-306 57-106 (997)
63 3fmo_B ATP-dependent RNA helic 90.8 0.6 2.1E-05 43.2 7.8 50 256-305 134-185 (300)
64 3b6e_A Interferon-induced heli 90.8 0.27 9.3E-06 41.7 5.0 42 256-297 51-97 (216)
65 2qgz_A Helicase loader, putati 90.7 0.16 5.4E-06 47.6 3.7 37 254-290 153-190 (308)
66 2ykg_A Probable ATP-dependent 90.5 0.85 2.9E-05 46.3 9.2 51 256-306 31-85 (696)
67 3h1t_A Type I site-specific re 90.4 0.47 1.6E-05 47.6 7.1 44 256-299 201-252 (590)
68 1w5s_A Origin recognition comp 89.7 0.29 9.9E-06 46.0 4.6 48 254-301 51-106 (412)
69 1xti_A Probable ATP-dependent 89.5 0.88 3E-05 42.1 7.7 50 256-305 48-99 (391)
70 2chg_A Replication factor C sm 89.4 0.94 3.2E-05 37.8 7.1 49 255-303 40-90 (226)
71 2z83_A Helicase/nucleoside tri 89.2 0.4 1.4E-05 47.1 5.4 50 254-303 22-71 (459)
72 2p6r_A Afuhel308 helicase; pro 88.9 0.33 1.1E-05 50.1 4.7 54 255-310 42-95 (702)
73 2z0h_A DTMP kinase, thymidylat 88.9 0.79 2.7E-05 38.4 6.4 36 256-291 3-38 (197)
74 3lfu_A DNA helicase II; SF1 he 88.8 0.61 2.1E-05 47.0 6.6 52 253-304 22-76 (647)
75 4a2q_A RIG-I, retinoic acid in 88.7 1.4 4.9E-05 46.1 9.5 52 256-307 266-321 (797)
76 1jbk_A CLPB protein; beta barr 88.1 0.54 1.8E-05 38.3 4.7 27 253-279 43-69 (195)
77 3a00_A Guanylate kinase, GMP k 87.5 0.27 9.2E-06 41.8 2.5 25 254-278 2-26 (186)
78 2qen_A Walker-type ATPase; unk 86.6 0.43 1.5E-05 43.4 3.6 32 255-291 33-64 (350)
79 2fna_A Conserved hypothetical 86.3 0.87 3E-05 41.4 5.4 34 255-291 32-65 (357)
80 1yks_A Genome polyprotein [con 86.1 0.64 2.2E-05 45.4 4.7 50 254-303 9-58 (440)
81 1nn5_A Similar to deoxythymidy 86.1 1.2 4.2E-05 37.8 6.0 37 255-291 11-47 (215)
82 1hqc_A RUVB; extended AAA-ATPa 85.9 1 3.5E-05 41.0 5.7 48 254-304 39-86 (324)
83 3n70_A Transport activator; si 85.9 0.51 1.8E-05 38.5 3.3 50 252-302 23-75 (145)
84 3u4q_A ATP-dependent helicase/ 85.9 1.3 4.5E-05 49.0 7.6 51 257-307 27-82 (1232)
85 1ex7_A Guanylate kinase; subst 85.6 0.4 1.4E-05 42.0 2.7 25 254-278 2-26 (186)
86 3b9q_A Chloroplast SRP recepto 85.5 2.4 8.1E-05 39.6 8.1 35 255-290 102-136 (302)
87 4ddu_A Reverse gyrase; topoiso 85.5 1.5 5E-05 48.3 7.6 48 256-304 96-143 (1104)
88 2w0m_A SSO2452; RECA, SSPF, un 85.5 0.99 3.4E-05 38.5 5.1 38 254-291 24-61 (235)
89 2jlq_A Serine protease subunit 85.2 0.77 2.6E-05 44.9 4.7 48 254-302 20-68 (451)
90 1kag_A SKI, shikimate kinase I 84.9 0.44 1.5E-05 39.4 2.4 23 255-277 6-28 (173)
91 1njg_A DNA polymerase III subu 84.8 2.6 9E-05 35.2 7.4 25 254-278 46-70 (250)
92 2fwr_A DNA repair protein RAD2 84.6 1.7 5.8E-05 41.9 6.9 45 256-304 111-155 (472)
93 4a2w_A RIG-I, retinoic acid in 84.6 1.9 6.6E-05 46.3 7.9 52 256-307 266-321 (936)
94 1l8q_A Chromosomal replication 84.5 0.79 2.7E-05 42.2 4.3 37 255-291 39-75 (324)
95 4gl2_A Interferon-induced heli 84.4 0.85 2.9E-05 46.4 4.8 49 256-304 25-79 (699)
96 3uie_A Adenylyl-sulfate kinase 84.2 0.93 3.2E-05 38.8 4.3 34 255-288 27-60 (200)
97 2v6i_A RNA helicase; membrane, 84.2 0.97 3.3E-05 43.9 4.9 48 254-302 3-51 (431)
98 1wp9_A ATP-dependent RNA helic 84.0 1.5 5.3E-05 40.9 6.1 51 256-306 26-76 (494)
99 4a15_A XPD helicase, ATP-depen 83.6 2.5 8.5E-05 43.4 7.9 48 255-302 24-71 (620)
100 1gku_B Reverse gyrase, TOP-RG; 83.3 1.6 5.6E-05 47.6 6.7 70 238-311 59-128 (1054)
101 4f92_B U5 small nuclear ribonu 83.3 2.8 9.5E-05 48.3 8.8 52 256-307 945-997 (1724)
102 2ehv_A Hypothetical protein PH 83.2 1 3.6E-05 39.0 4.3 38 254-291 31-69 (251)
103 2bjv_A PSP operon transcriptio 83.1 0.7 2.4E-05 41.2 3.2 38 253-290 29-66 (265)
104 3fho_A ATP-dependent RNA helic 83.0 1.7 5.7E-05 43.0 6.2 53 255-307 160-214 (508)
105 3kb2_A SPBC2 prophage-derived 83.0 0.69 2.4E-05 37.8 2.9 33 255-292 3-35 (173)
106 3a4m_A L-seryl-tRNA(SEC) kinas 82.9 1.1 3.7E-05 40.4 4.4 34 255-288 6-39 (260)
107 2pez_A Bifunctional 3'-phospho 82.9 1.2 4E-05 37.2 4.3 33 255-287 7-39 (179)
108 3e70_C DPA, signal recognition 82.7 2 6.9E-05 40.7 6.4 34 254-288 130-163 (328)
109 2pbr_A DTMP kinase, thymidylat 82.5 2.1 7.3E-05 35.4 5.8 37 255-291 2-38 (195)
110 3kl4_A SRP54, signal recogniti 82.5 1.8 6.1E-05 42.8 6.1 49 254-302 98-148 (433)
111 2px0_A Flagellar biosynthesis 82.4 1.7 5.8E-05 40.4 5.6 36 254-289 106-142 (296)
112 2whx_A Serine protease/ntpase/ 82.3 1.1 3.8E-05 46.0 4.7 49 254-302 187-235 (618)
113 3lnc_A Guanylate kinase, GMP k 82.3 0.52 1.8E-05 41.3 2.0 22 255-276 29-51 (231)
114 1lvg_A Guanylate kinase, GMP k 82.1 0.74 2.5E-05 39.8 2.8 25 254-278 5-29 (198)
115 2plr_A DTMP kinase, probable t 81.9 1.8 6.1E-05 36.5 5.2 27 255-281 6-32 (213)
116 2p65_A Hypothetical protein PF 81.7 2.3 8E-05 34.5 5.7 26 254-279 44-69 (187)
117 3dm5_A SRP54, signal recogniti 81.7 2.7 9.3E-05 41.7 7.1 38 253-290 100-137 (443)
118 3tr0_A Guanylate kinase, GMP k 81.0 0.78 2.7E-05 38.8 2.6 23 255-277 9-31 (205)
119 3pfi_A Holliday junction ATP-d 80.9 2.3 7.8E-05 39.0 5.9 42 254-298 56-97 (338)
120 1rj9_A FTSY, signal recognitio 80.6 1.3 4.4E-05 41.5 4.1 36 254-290 103-138 (304)
121 3hr8_A Protein RECA; alpha and 80.6 4.1 0.00014 39.2 7.8 38 254-291 62-99 (356)
122 2wwf_A Thymidilate kinase, put 80.5 2 6.7E-05 36.4 4.9 37 255-291 12-48 (212)
123 1knq_A Gluconate kinase; ALFA/ 80.4 0.91 3.1E-05 37.6 2.7 23 255-277 10-32 (175)
124 2og2_A Putative signal recogni 80.4 2.7 9.4E-05 40.4 6.5 35 255-290 159-193 (359)
125 4a74_A DNA repair and recombin 80.2 2.2 7.4E-05 36.4 5.1 47 254-300 26-81 (231)
126 1ye8_A Protein THEP1, hypothet 80.1 0.92 3.1E-05 38.9 2.7 22 256-277 3-24 (178)
127 3crv_A XPD/RAD3 related DNA he 80.0 4.4 0.00015 40.6 8.0 45 255-303 24-68 (551)
128 2i3b_A HCR-ntpase, human cance 79.9 1.1 3.7E-05 39.0 3.2 27 255-281 3-29 (189)
129 3e2i_A Thymidine kinase; Zn-bi 79.7 1.3 4.4E-05 40.2 3.6 38 255-294 30-68 (219)
130 1cke_A CK, MSSA, protein (cyti 79.6 0.97 3.3E-05 38.9 2.7 23 255-277 7-29 (227)
131 2vl7_A XPD; helicase, unknown 79.5 4.5 0.00016 40.4 8.0 44 256-303 29-72 (540)
132 1zp6_A Hypothetical protein AT 79.4 0.96 3.3E-05 37.8 2.6 22 255-276 11-32 (191)
133 1nks_A Adenylate kinase; therm 79.4 1.7 6E-05 35.9 4.2 33 255-288 3-35 (194)
134 1kgd_A CASK, peripheral plasma 79.4 0.99 3.4E-05 38.1 2.6 25 254-278 6-30 (180)
135 4f92_B U5 small nuclear ribonu 79.3 2.6 9.1E-05 48.5 6.8 57 256-312 98-164 (1724)
136 2dr3_A UPF0273 protein PH0284; 79.2 2.1 7.2E-05 36.9 4.8 38 254-291 24-61 (247)
137 1vma_A Cell division protein F 79.1 3.2 0.00011 38.9 6.3 37 254-290 105-141 (306)
138 3t61_A Gluconokinase; PSI-biol 79.1 1.1 3.7E-05 38.2 2.8 23 255-277 20-42 (202)
139 3o8b_A HCV NS3 protease/helica 79.1 2.2 7.4E-05 44.6 5.6 49 254-306 233-281 (666)
140 2yvu_A Probable adenylyl-sulfa 78.6 2 6.7E-05 36.0 4.3 28 255-282 15-42 (186)
141 1s96_A Guanylate kinase, GMP k 78.6 1 3.5E-05 40.0 2.6 25 254-278 17-41 (219)
142 3tau_A Guanylate kinase, GMP k 78.4 0.69 2.3E-05 40.1 1.4 25 254-278 9-33 (208)
143 2ewv_A Twitching motility prot 78.4 1.6 5.5E-05 41.9 4.1 32 255-286 138-169 (372)
144 1n0w_A DNA repair protein RAD5 78.3 2.6 8.8E-05 36.3 5.1 38 254-291 25-68 (243)
145 2b8t_A Thymidine kinase; deoxy 78.2 1.6 5.6E-05 39.2 3.8 38 255-293 14-51 (223)
146 2yhs_A FTSY, cell division pro 78.1 1.6 5.4E-05 44.2 4.1 35 254-289 294-328 (503)
147 3asz_A Uridine kinase; cytidin 78.0 1.2 4.2E-05 38.0 2.8 24 255-278 8-31 (211)
148 1sxj_A Activator 1 95 kDa subu 77.9 2.3 8E-05 42.3 5.2 41 253-296 77-117 (516)
149 4eun_A Thermoresistant glucoki 77.8 1.2 4.1E-05 38.1 2.7 23 255-277 31-53 (200)
150 2wv9_A Flavivirin protease NS2 77.8 2 6.7E-05 44.8 4.8 49 254-302 242-290 (673)
151 2cvh_A DNA repair and recombin 77.7 3.1 0.00011 35.2 5.3 35 254-291 21-55 (220)
152 4tmk_A Protein (thymidylate ki 77.7 2.1 7.3E-05 37.9 4.4 35 255-289 5-39 (213)
153 2eyu_A Twitching motility prot 77.5 1.9 6.4E-05 39.3 4.1 33 255-287 27-59 (261)
154 4dzz_A Plasmid partitioning pr 77.0 7.5 0.00026 32.5 7.6 35 255-289 4-38 (206)
155 1gtv_A TMK, thymidylate kinase 77.0 0.96 3.3E-05 38.5 1.9 28 255-282 2-29 (214)
156 1lv7_A FTSH; alpha/beta domain 77.0 11 0.00038 33.0 9.0 18 256-273 48-65 (257)
157 3co5_A Putative two-component 76.9 1.1 3.7E-05 36.5 2.1 19 253-271 27-45 (143)
158 1rz3_A Hypothetical protein rb 76.8 2.4 8.2E-05 36.3 4.4 33 255-288 24-56 (201)
159 1qhx_A CPT, protein (chloramph 76.7 1.2 4.1E-05 36.8 2.3 23 255-277 5-27 (178)
160 1y63_A LMAJ004144AAA protein; 76.5 1.5 5E-05 37.1 2.9 22 255-276 12-33 (184)
161 1njg_A DNA polymerase III subu 76.4 2 6.8E-05 36.0 3.7 34 187-220 29-62 (250)
162 1gvn_B Zeta; postsegregational 76.3 1.7 5.7E-05 40.1 3.4 24 254-277 34-57 (287)
163 2qz4_A Paraplegin; AAA+, SPG7, 76.2 4.9 0.00017 35.0 6.4 47 254-303 40-95 (262)
164 3dr5_A Putative O-methyltransf 75.9 6.6 0.00023 34.4 7.1 71 43-126 127-197 (221)
165 2rhm_A Putative kinase; P-loop 75.8 1.6 5.4E-05 36.4 2.9 23 255-277 7-29 (193)
166 2v54_A DTMP kinase, thymidylat 75.8 1.6 5.4E-05 36.8 2.9 35 255-291 6-40 (204)
167 2j41_A Guanylate kinase; GMP, 75.6 1.3 4.6E-05 37.3 2.4 23 255-277 8-30 (207)
168 1z6g_A Guanylate kinase; struc 75.5 1.3 4.5E-05 38.8 2.4 23 255-277 25-47 (218)
169 2bbw_A Adenylate kinase 4, AK4 75.3 1.5 5.1E-05 38.8 2.7 23 255-277 29-51 (246)
170 1zu4_A FTSY; GTPase, signal re 75.1 2.6 9E-05 39.6 4.5 35 254-289 106-140 (320)
171 1tue_A Replication protein E1; 75.1 1.8 6.3E-05 39.0 3.2 39 236-278 44-82 (212)
172 3c8u_A Fructokinase; YP_612366 75.0 3.1 0.00011 35.7 4.7 25 255-279 24-48 (208)
173 3trf_A Shikimate kinase, SK; a 75.0 1.7 5.7E-05 36.2 2.8 23 255-277 7-29 (185)
174 2www_A Methylmalonic aciduria 74.9 2.5 8.4E-05 40.1 4.3 38 255-293 76-113 (349)
175 3cm0_A Adenylate kinase; ATP-b 74.9 1.6 5.5E-05 36.2 2.7 23 255-277 6-28 (186)
176 2x8a_A Nuclear valosin-contain 74.5 3.7 0.00013 37.4 5.2 45 256-303 47-100 (274)
177 1jr3_A DNA polymerase III subu 74.3 1.9 6.5E-05 39.8 3.3 26 253-278 38-63 (373)
178 2if2_A Dephospho-COA kinase; a 74.2 1.6 5.4E-05 37.1 2.5 21 255-275 3-23 (204)
179 2pcj_A ABC transporter, lipopr 74.2 1.9 6.6E-05 38.2 3.1 22 255-276 32-53 (224)
180 3vaa_A Shikimate kinase, SK; s 74.0 1.8 6.1E-05 37.0 2.8 23 255-277 27-49 (199)
181 1j8m_F SRP54, signal recogniti 73.9 6.3 0.00021 36.6 6.7 36 255-290 100-135 (297)
182 2bdt_A BH3686; alpha-beta prot 73.8 1.6 5.5E-05 36.6 2.4 21 255-275 4-24 (189)
183 2p5t_B PEZT; postsegregational 73.7 1.8 6E-05 38.7 2.8 24 254-277 33-56 (253)
184 1htw_A HI0065; nucleotide-bind 73.5 1.7 5.9E-05 36.6 2.5 27 255-281 35-61 (158)
185 3iij_A Coilin-interacting nucl 73.4 1.9 6.6E-05 35.8 2.8 24 254-277 12-35 (180)
186 3fb4_A Adenylate kinase; psych 73.3 1.8 6.3E-05 37.0 2.7 22 256-277 3-24 (216)
187 2qm8_A GTPase/ATPase; G protei 73.0 2.9 9.9E-05 39.5 4.2 37 255-292 57-93 (337)
188 3jvv_A Twitching mobility prot 72.9 2.7 9.3E-05 40.2 4.1 26 255-280 125-150 (356)
189 1ls1_A Signal recognition part 72.8 4.4 0.00015 37.4 5.4 34 255-289 100-133 (295)
190 3tr6_A O-methyltransferase; ce 72.6 4.7 0.00016 34.4 5.2 70 44-126 139-208 (225)
191 2jaq_A Deoxyguanosine kinase; 72.4 2 6.8E-05 35.9 2.7 23 256-278 3-25 (205)
192 1tev_A UMP-CMP kinase; ploop, 72.4 2.1 7.1E-05 35.5 2.8 23 255-277 5-27 (196)
193 2c95_A Adenylate kinase 1; tra 72.4 2.1 7.2E-05 35.7 2.8 23 255-277 11-33 (196)
194 1e6c_A Shikimate kinase; phosp 72.3 2.1 7.1E-05 35.0 2.7 23 255-277 4-26 (173)
195 1uaa_A REP helicase, protein ( 72.3 3.8 0.00013 41.9 5.2 52 254-305 16-70 (673)
196 3ney_A 55 kDa erythrocyte memb 72.2 1.9 6.6E-05 38.0 2.6 25 254-278 20-44 (197)
197 4gp7_A Metallophosphoesterase; 72.2 1.3 4.6E-05 37.1 1.5 18 255-272 11-28 (171)
198 2qor_A Guanylate kinase; phosp 72.1 1.8 6.2E-05 37.1 2.4 24 254-277 13-36 (204)
199 1xwi_A SKD1 protein; VPS4B, AA 72.0 5.6 0.00019 36.9 5.9 49 254-304 46-103 (322)
200 1mv5_A LMRA, multidrug resista 72.0 2.1 7.2E-05 38.4 2.9 23 255-277 30-52 (243)
201 2cbz_A Multidrug resistance-as 72.0 2.4 8.2E-05 37.9 3.3 23 255-277 33-55 (237)
202 4eaq_A DTMP kinase, thymidylat 72.0 4.6 0.00016 35.7 5.1 32 255-288 28-59 (229)
203 2pze_A Cystic fibrosis transme 72.0 2.3 7.8E-05 37.8 3.1 23 255-277 36-58 (229)
204 3kta_A Chromosome segregation 71.9 2 6.7E-05 35.7 2.5 22 254-275 27-48 (182)
205 3tfw_A Putative O-methyltransf 71.9 5.3 0.00018 35.3 5.5 70 44-126 135-204 (248)
206 4ag6_A VIRB4 ATPase, type IV s 71.8 2.8 9.7E-05 39.8 3.9 39 255-294 37-75 (392)
207 1qf9_A UMP/CMP kinase, protein 71.8 2.2 7.7E-05 35.2 2.8 23 255-277 8-30 (194)
208 1tf7_A KAIC; homohexamer, hexa 71.7 3.3 0.00011 41.3 4.5 38 254-291 40-78 (525)
209 2jeo_A Uridine-cytidine kinase 71.5 2.1 7.2E-05 37.9 2.7 23 255-277 27-49 (245)
210 3p32_A Probable GTPase RV1496/ 71.5 2.7 9.1E-05 39.7 3.6 36 255-291 81-116 (355)
211 1via_A Shikimate kinase; struc 71.4 2.2 7.6E-05 35.3 2.7 23 255-277 6-28 (175)
212 1sxj_E Activator 1 40 kDa subu 71.4 2.4 8.1E-05 39.1 3.2 23 256-278 39-61 (354)
213 1sgw_A Putative ABC transporte 70.8 2.5 8.7E-05 37.4 3.1 23 255-277 37-59 (214)
214 3dl0_A Adenylate kinase; phosp 70.8 1.9 6.6E-05 36.9 2.3 22 256-277 3-24 (216)
215 3syl_A Protein CBBX; photosynt 70.7 4.1 0.00014 36.7 4.5 28 254-281 68-95 (309)
216 3tif_A Uncharacterized ABC tra 70.7 2.6 8.8E-05 37.7 3.2 23 255-277 33-55 (235)
217 2woo_A ATPase GET3; tail-ancho 70.7 5.3 0.00018 37.3 5.5 39 250-288 16-54 (329)
218 3r3h_A O-methyltransferase, SA 70.6 5.4 0.00019 35.4 5.3 71 43-126 134-204 (242)
219 2bwj_A Adenylate kinase 5; pho 70.4 2.5 8.4E-05 35.3 2.8 23 255-277 14-36 (199)
220 1jbk_A CLPB protein; beta barr 70.4 3.2 0.00011 33.5 3.4 31 189-220 30-60 (195)
221 1znw_A Guanylate kinase, GMP k 70.4 2 6.8E-05 36.9 2.3 23 255-277 22-44 (207)
222 1ji0_A ABC transporter; ATP bi 70.3 2.6 8.8E-05 37.7 3.1 23 255-277 34-56 (240)
223 3duw_A OMT, O-methyltransferas 70.2 9.7 0.00033 32.4 6.7 70 44-126 132-201 (223)
224 1jjv_A Dephospho-COA kinase; P 70.2 2 6.9E-05 36.5 2.2 21 255-275 4-24 (206)
225 1kht_A Adenylate kinase; phosp 70.1 4.1 0.00014 33.6 4.1 27 255-281 5-31 (192)
226 1b0u_A Histidine permease; ABC 70.0 2.7 9.1E-05 38.3 3.2 23 255-277 34-56 (262)
227 2pt5_A Shikimate kinase, SK; a 70.0 2.4 8.4E-05 34.5 2.7 22 256-277 3-24 (168)
228 2iyv_A Shikimate kinase, SK; t 69.9 2.5 8.5E-05 35.2 2.7 23 255-277 4-26 (184)
229 2w00_A HSDR, R.ECOR124I; ATP-b 69.9 7.9 0.00027 42.4 7.3 44 256-300 303-348 (1038)
230 2v3c_C SRP54, signal recogniti 69.8 3.2 0.00011 40.8 3.9 35 255-289 101-135 (432)
231 1xx6_A Thymidine kinase; NESG, 69.5 3.8 0.00013 35.7 3.9 39 255-294 10-48 (191)
232 1d2n_A N-ethylmaleimide-sensit 69.4 4.4 0.00015 36.1 4.4 36 253-291 64-99 (272)
233 4edh_A DTMP kinase, thymidylat 69.2 7 0.00024 34.4 5.6 37 255-291 8-44 (213)
234 2d2e_A SUFC protein; ABC-ATPas 69.1 3.4 0.00012 37.2 3.6 22 255-276 31-52 (250)
235 3lw7_A Adenylate kinase relate 69.0 2.3 8E-05 34.1 2.3 19 255-273 3-21 (179)
236 2olj_A Amino acid ABC transpor 68.8 3 0.0001 38.1 3.3 23 255-277 52-74 (263)
237 2z4s_A Chromosomal replication 68.7 3.6 0.00012 40.2 3.9 38 254-291 131-170 (440)
238 3rc3_A ATP-dependent RNA helic 68.5 5 0.00017 41.8 5.2 46 254-304 156-201 (677)
239 1m7g_A Adenylylsulfate kinase; 68.5 4.4 0.00015 34.7 4.1 33 255-287 27-60 (211)
240 2ff7_A Alpha-hemolysin translo 68.5 2.9 9.8E-05 37.7 3.0 23 255-277 37-59 (247)
241 1ws6_A Methyltransferase; stru 68.1 3.6 0.00012 33.2 3.2 43 44-86 109-154 (171)
242 3lv8_A DTMP kinase, thymidylat 67.9 8.3 0.00028 34.7 5.9 37 255-291 29-66 (236)
243 2onk_A Molybdate/tungstate ABC 67.9 2.3 8E-05 38.3 2.2 24 254-277 25-48 (240)
244 1ojl_A Transcriptional regulat 67.8 3.2 0.00011 38.3 3.2 38 253-290 25-62 (304)
245 2ixe_A Antigen peptide transpo 67.7 3.2 0.00011 38.0 3.2 23 255-277 47-69 (271)
246 3h4m_A Proteasome-activating n 67.6 6.8 0.00023 34.8 5.3 34 254-290 52-85 (285)
247 2nq2_C Hypothetical ABC transp 67.5 3.2 0.00011 37.6 3.1 23 255-277 33-55 (253)
248 3b85_A Phosphate starvation-in 67.3 2.7 9.1E-05 37.0 2.4 29 255-283 24-52 (208)
249 1pjr_A PCRA; DNA repair, DNA r 67.2 7.4 0.00025 40.4 6.2 51 254-304 25-78 (724)
250 3zq6_A Putative arsenical pump 67.1 9.2 0.00032 35.5 6.3 49 251-299 12-60 (324)
251 1vpl_A ABC transporter, ATP-bi 66.8 3.5 0.00012 37.4 3.3 23 255-277 43-65 (256)
252 1zuh_A Shikimate kinase; alpha 66.7 3.2 0.00011 34.0 2.7 23 255-277 9-31 (168)
253 4g1u_C Hemin import ATP-bindin 66.7 3.3 0.00011 37.8 3.1 23 255-277 39-61 (266)
254 1cr0_A DNA primase/helicase; R 66.7 5.6 0.00019 35.9 4.6 35 255-289 37-72 (296)
255 2yz2_A Putative ABC transporte 66.6 3.6 0.00012 37.4 3.3 22 255-276 35-56 (266)
256 2qi9_C Vitamin B12 import ATP- 66.5 3.4 0.00012 37.4 3.1 23 255-277 28-50 (249)
257 2v9p_A Replication protein E1; 66.4 3.4 0.00012 38.8 3.2 41 243-287 115-156 (305)
258 1ly1_A Polynucleotide kinase; 66.4 3 0.0001 34.1 2.4 21 255-275 4-24 (181)
259 4fcw_A Chaperone protein CLPB; 66.2 3.5 0.00012 37.1 3.1 35 254-288 48-82 (311)
260 1yrb_A ATP(GTP)binding protein 66.2 5.3 0.00018 34.9 4.2 34 254-289 15-48 (262)
261 2cdn_A Adenylate kinase; phosp 66.1 3.3 0.00011 35.1 2.7 23 255-277 22-44 (201)
262 2ghi_A Transport protein; mult 66.0 3.8 0.00013 37.2 3.3 23 255-277 48-70 (260)
263 1in4_A RUVB, holliday junction 66.0 3.1 0.0001 38.8 2.7 23 255-277 53-75 (334)
264 2zu0_C Probable ATP-dependent 65.8 4.5 0.00015 36.8 3.8 22 255-276 48-69 (267)
265 3gfo_A Cobalt import ATP-bindi 65.7 3.5 0.00012 38.0 3.0 23 255-277 36-58 (275)
266 2v1x_A ATP-dependent DNA helic 65.7 13 0.00045 37.7 7.6 44 256-303 62-105 (591)
267 2chg_A Replication factor C sm 65.4 23 0.00079 29.0 7.9 31 189-220 25-55 (226)
268 1jr3_A DNA polymerase III subu 65.3 4.4 0.00015 37.3 3.6 35 186-220 21-55 (373)
269 2avd_A Catechol-O-methyltransf 65.3 13 0.00046 31.6 6.6 69 44-125 144-212 (229)
270 2ihy_A ABC transporter, ATP-bi 65.0 3.7 0.00013 37.8 3.1 23 255-277 49-71 (279)
271 1nij_A Hypothetical protein YJ 64.8 4.2 0.00014 37.8 3.4 23 255-277 6-28 (318)
272 3igf_A ALL4481 protein; two-do 64.8 4.8 0.00016 38.9 3.9 45 254-299 3-47 (374)
273 2qt1_A Nicotinamide riboside k 64.7 3.1 0.00011 35.4 2.3 23 255-277 23-45 (207)
274 2qen_A Walker-type ATPase; unk 64.4 5.5 0.00019 35.9 4.0 18 204-221 32-49 (350)
275 2zts_A Putative uncharacterize 64.3 8.2 0.00028 33.1 5.0 36 254-289 31-67 (251)
276 2bbs_A Cystic fibrosis transme 63.9 4.4 0.00015 37.6 3.4 23 255-277 66-88 (290)
277 1p9r_A General secretion pathw 63.7 4 0.00014 40.0 3.2 25 255-279 169-193 (418)
278 1f2t_A RAD50 ABC-ATPase; DNA d 63.7 2.6 8.8E-05 34.9 1.5 20 254-273 24-43 (149)
279 1vht_A Dephospho-COA kinase; s 63.5 8.5 0.00029 32.9 4.9 21 255-275 6-26 (218)
280 1g6h_A High-affinity branched- 63.5 2.7 9.1E-05 38.0 1.7 23 255-277 35-57 (257)
281 1sq5_A Pantothenate kinase; P- 63.4 3.8 0.00013 37.8 2.8 24 255-278 82-105 (308)
282 2x77_A ADP-ribosylation factor 63.0 2.7 9.3E-05 34.7 1.6 18 256-273 25-42 (189)
283 2ze6_A Isopentenyl transferase 62.9 3.9 0.00013 36.6 2.7 23 255-277 3-25 (253)
284 1uf9_A TT1252 protein; P-loop, 62.8 3.8 0.00013 34.2 2.5 22 255-276 10-31 (203)
285 1np6_A Molybdopterin-guanine d 62.8 7.7 0.00026 33.2 4.5 37 255-291 8-45 (174)
286 1aky_A Adenylate kinase; ATP:A 62.7 4.1 0.00014 35.1 2.7 23 255-277 6-28 (220)
287 1xjc_A MOBB protein homolog; s 62.6 7.8 0.00027 33.2 4.5 28 255-282 6-33 (169)
288 2zr9_A Protein RECA, recombina 62.4 7.6 0.00026 36.8 4.8 38 254-291 62-99 (349)
289 2j37_W Signal recognition part 62.3 6.1 0.00021 39.7 4.3 35 255-289 103-137 (504)
290 2p67_A LAO/AO transport system 62.2 5.7 0.0002 37.2 3.8 35 255-290 58-92 (341)
291 3nwj_A ATSK2; P loop, shikimat 62.2 4.2 0.00014 36.9 2.8 24 254-277 49-72 (250)
292 2it1_A 362AA long hypothetical 62.1 5.4 0.00018 38.4 3.7 23 255-277 31-53 (362)
293 1ek0_A Protein (GTP-binding pr 62.0 2.9 0.0001 33.2 1.5 21 256-276 6-26 (170)
294 1zd8_A GTP:AMP phosphotransfer 62.0 3.7 0.00013 35.6 2.4 23 255-277 9-31 (227)
295 1pui_A ENGB, probable GTP-bind 62.0 2.9 0.0001 35.1 1.6 20 255-274 28-47 (210)
296 2yvl_A TRMI protein, hypotheti 62.0 6.9 0.00024 33.7 4.1 39 43-84 156-195 (248)
297 1z2a_A RAS-related protein RAB 61.9 2.9 0.0001 33.2 1.5 20 256-275 8-27 (168)
298 1zak_A Adenylate kinase; ATP:A 61.8 4.6 0.00016 34.8 2.9 23 255-277 7-29 (222)
299 1e9r_A Conjugal transfer prote 61.7 10 0.00035 36.3 5.6 43 254-297 54-96 (437)
300 2dyk_A GTP-binding protein; GT 61.5 3 0.0001 33.0 1.5 20 256-275 4-23 (161)
301 3pqc_A Probable GTP-binding pr 61.5 3.1 0.00011 34.0 1.7 22 255-276 25-46 (195)
302 2vli_A Antibiotic resistance p 61.5 3.5 0.00012 34.0 2.0 23 255-277 7-29 (183)
303 1z47_A CYSA, putative ABC-tran 61.3 5.5 0.00019 38.2 3.6 23 255-277 43-65 (355)
304 2ged_A SR-beta, signal recogni 61.3 3.9 0.00013 33.8 2.2 21 255-275 50-70 (193)
305 2yyz_A Sugar ABC transporter, 61.2 5.9 0.0002 38.1 3.8 23 255-277 31-53 (359)
306 3qks_A DNA double-strand break 61.2 3 0.0001 36.2 1.6 20 254-273 24-43 (203)
307 3u61_B DNA polymerase accessor 61.1 14 0.00047 33.5 6.2 46 251-300 46-91 (324)
308 1sxj_B Activator 1 37 kDa subu 61.1 8.4 0.00029 34.4 4.6 43 256-298 45-89 (323)
309 3uk6_A RUVB-like 2; hexameric 61.0 5.5 0.00019 36.7 3.5 25 254-278 71-95 (368)
310 1e4v_A Adenylate kinase; trans 60.8 4.8 0.00016 34.5 2.8 22 256-277 3-24 (214)
311 2pjz_A Hypothetical protein ST 60.8 3.2 0.00011 38.0 1.7 23 255-277 32-54 (263)
312 1svi_A GTP-binding protein YSX 60.8 4.2 0.00014 33.5 2.4 21 255-275 25-45 (195)
313 3v9p_A DTMP kinase, thymidylat 60.7 14 0.00048 32.9 6.0 36 255-291 27-67 (227)
314 1v43_A Sugar-binding transport 60.6 5.9 0.0002 38.2 3.7 23 255-277 39-61 (372)
315 2xxa_A Signal recognition part 60.6 7.7 0.00026 38.1 4.6 38 254-292 101-139 (433)
316 3cbg_A O-methyltransferase; cy 60.4 14 0.00047 32.2 5.8 70 44-126 147-216 (232)
317 2zan_A Vacuolar protein sortin 60.4 9.5 0.00033 37.1 5.2 48 254-303 168-224 (444)
318 3te6_A Regulatory protein SIR3 60.3 9.2 0.00032 36.1 4.9 48 254-301 46-100 (318)
319 3ake_A Cytidylate kinase; CMP 60.2 4.9 0.00017 33.7 2.7 23 255-277 4-26 (208)
320 1ukz_A Uridylate kinase; trans 60.2 4.2 0.00014 34.3 2.3 22 255-276 17-38 (203)
321 1a7j_A Phosphoribulokinase; tr 60.0 7.1 0.00024 35.9 4.0 36 255-290 7-42 (290)
322 1u94_A RECA protein, recombina 59.8 8.7 0.0003 36.7 4.7 37 254-290 64-100 (356)
323 2qp9_X Vacuolar protein sortin 59.8 10 0.00035 35.7 5.1 47 254-303 85-140 (355)
324 3cf0_A Transitional endoplasmi 59.7 13 0.00045 33.8 5.8 48 254-304 50-106 (301)
325 1wms_A RAB-9, RAB9, RAS-relate 59.7 3.4 0.00011 33.4 1.5 21 255-275 9-29 (177)
326 3aez_A Pantothenate kinase; tr 59.6 4.7 0.00016 37.7 2.7 25 255-279 92-116 (312)
327 1oix_A RAS-related protein RAB 59.6 3.4 0.00012 34.6 1.6 22 255-276 31-52 (191)
328 1z08_A RAS-related protein RAB 59.5 3.4 0.00012 33.0 1.5 20 256-275 9-28 (170)
329 1g29_1 MALK, maltose transport 59.5 6.2 0.00021 38.0 3.6 23 255-277 31-53 (372)
330 1g16_A RAS-related protein SEC 59.3 3.6 0.00012 32.8 1.6 19 256-274 6-24 (170)
331 3fvq_A Fe(3+) IONS import ATP- 59.3 6.6 0.00023 37.8 3.8 23 255-277 32-54 (359)
332 3clv_A RAB5 protein, putative; 59.3 4.4 0.00015 33.0 2.2 21 256-276 10-30 (208)
333 3d31_A Sulfate/molybdate ABC t 59.2 4.7 0.00016 38.5 2.7 23 255-277 28-50 (348)
334 1iqp_A RFCS; clamp loader, ext 59.2 13 0.00044 33.2 5.5 44 255-298 48-93 (327)
335 3ug7_A Arsenical pump-driving 59.1 13 0.00044 35.0 5.7 39 250-288 23-61 (349)
336 2zej_A Dardarin, leucine-rich 59.1 3.4 0.00012 34.2 1.5 21 255-275 4-24 (184)
337 1z0j_A RAB-22, RAS-related pro 59.0 3.5 0.00012 32.8 1.5 21 256-276 9-29 (170)
338 1byi_A Dethiobiotin synthase; 58.9 8.2 0.00028 32.9 4.0 33 255-288 4-36 (224)
339 3tlx_A Adenylate kinase 2; str 58.7 5.2 0.00018 35.5 2.7 23 255-277 31-53 (243)
340 2ce2_X GTPase HRAS; signaling 58.6 4.9 0.00017 31.5 2.3 21 256-276 6-26 (166)
341 3sop_A Neuronal-specific septi 58.6 5.4 0.00018 36.4 2.9 23 256-278 5-27 (270)
342 4e22_A Cytidylate kinase; P-lo 58.6 4.7 0.00016 36.0 2.4 21 255-275 29-49 (252)
343 1moz_A ARL1, ADP-ribosylation 58.5 3.6 0.00012 33.5 1.5 18 255-272 20-37 (183)
344 1r8s_A ADP-ribosylation factor 58.5 3.6 0.00012 32.7 1.5 20 256-275 3-22 (164)
345 2ffh_A Protein (FFH); SRP54, s 58.5 8.2 0.00028 38.0 4.3 36 255-291 100-135 (425)
346 3tw8_B RAS-related protein RAB 58.5 3.6 0.00012 33.1 1.5 19 256-274 12-30 (181)
347 1upt_A ARL1, ADP-ribosylation 58.4 3.7 0.00013 32.8 1.5 21 255-275 9-29 (171)
348 2y8e_A RAB-protein 6, GH09086P 58.3 3.8 0.00013 32.9 1.6 21 255-275 16-36 (179)
349 1ky3_A GTP-binding protein YPT 58.3 3.7 0.00013 33.1 1.5 21 255-275 10-30 (182)
350 1r2q_A RAS-related protein RAB 58.3 3.7 0.00013 32.6 1.5 21 255-275 8-28 (170)
351 1jwy_B Dynamin A GTPase domain 58.2 5.1 0.00017 36.3 2.6 21 255-275 26-46 (315)
352 2p65_A Hypothetical protein PF 58.1 5.6 0.00019 32.1 2.7 32 188-220 29-60 (187)
353 2xb4_A Adenylate kinase; ATP-b 58.0 5.4 0.00019 34.7 2.7 22 256-277 3-24 (223)
354 1nlf_A Regulatory protein REPA 58.0 10 0.00035 34.0 4.6 25 254-278 31-55 (279)
355 1z63_A Helicase of the SNF2/RA 58.0 34 0.0012 32.9 8.7 37 256-292 59-96 (500)
356 1sxj_D Activator 1 41 kDa subu 58.0 6.7 0.00023 35.7 3.4 24 255-278 60-83 (353)
357 3d8b_A Fidgetin-like protein 1 58.0 12 0.0004 35.2 5.2 35 254-291 118-152 (357)
358 2dpy_A FLII, flagellum-specifi 58.0 4.5 0.00015 39.8 2.4 24 255-278 159-182 (438)
359 1uj2_A Uridine-cytidine kinase 57.8 4.9 0.00017 35.6 2.4 23 255-277 24-46 (252)
360 2obl_A ESCN; ATPase, hydrolase 57.8 4.6 0.00016 38.4 2.4 24 255-278 73-96 (347)
361 1q3t_A Cytidylate kinase; nucl 57.7 5.7 0.00019 34.8 2.8 23 255-277 18-40 (236)
362 3be4_A Adenylate kinase; malar 57.7 5.8 0.0002 34.2 2.8 23 255-277 7-29 (217)
363 3q85_A GTP-binding protein REM 57.6 3.9 0.00013 32.7 1.5 19 256-274 5-23 (169)
364 1fs0_G ATP synthase gamma subu 57.5 2.5 8.4E-05 38.1 0.4 76 205-305 60-141 (230)
365 2z43_A DNA repair and recombin 57.4 13 0.00044 34.4 5.3 39 254-292 108-152 (324)
366 2erx_A GTP-binding protein DI- 57.3 5.1 0.00017 31.8 2.2 20 256-275 6-25 (172)
367 2grj_A Dephospho-COA kinase; T 57.2 5.9 0.0002 34.3 2.7 22 255-276 14-35 (192)
368 3q72_A GTP-binding protein RAD 57.1 4.1 0.00014 32.4 1.6 18 256-273 5-22 (166)
369 1ofh_A ATP-dependent HSL prote 57.1 8.4 0.00029 34.3 3.9 34 254-290 51-84 (310)
370 3bc1_A RAS-related protein RAB 56.9 4 0.00014 33.2 1.5 21 255-275 13-33 (195)
371 1fnn_A CDC6P, cell division co 56.9 11 0.00037 34.7 4.7 38 184-221 23-62 (389)
372 3ntv_A MW1564 protein; rossman 56.9 7.4 0.00025 33.9 3.4 36 42-77 139-174 (232)
373 2f9l_A RAB11B, member RAS onco 56.9 5 0.00017 33.6 2.2 21 256-276 8-28 (199)
374 3iqw_A Tail-anchored protein t 56.8 12 0.0004 35.4 5.0 47 253-299 16-62 (334)
375 2cxx_A Probable GTP-binding pr 56.8 5.4 0.00019 32.5 2.4 20 256-275 4-23 (190)
376 2w58_A DNAI, primosome compone 56.8 15 0.00053 30.7 5.3 39 183-221 31-72 (202)
377 3rlf_A Maltose/maltodextrin im 56.8 7.5 0.00026 37.8 3.7 23 255-277 31-53 (381)
378 3b9p_A CG5977-PA, isoform A; A 56.7 5.3 0.00018 35.8 2.5 35 254-291 55-89 (297)
379 2wjg_A FEOB, ferrous iron tran 56.7 5.2 0.00018 32.7 2.2 21 255-275 9-29 (188)
380 2j9r_A Thymidine kinase; TK1, 56.5 11 0.00036 33.9 4.4 51 255-307 30-84 (214)
381 1sui_A Caffeoyl-COA O-methyltr 56.3 7 0.00024 34.8 3.2 35 43-77 154-188 (247)
382 1a5t_A Delta prime, HOLB; zinc 56.2 15 0.00051 34.0 5.6 30 250-279 21-50 (334)
383 3e05_A Precorrin-6Y C5,15-meth 56.2 9.7 0.00033 32.0 3.9 42 44-85 107-148 (204)
384 2yv5_A YJEQ protein; hydrolase 56.2 4.4 0.00015 37.5 1.9 21 254-274 166-186 (302)
385 2r62_A Cell division protease 56.2 5.3 0.00018 35.3 2.3 24 254-277 45-68 (268)
386 2f1r_A Molybdopterin-guanine d 56.0 7.1 0.00024 33.2 3.0 27 255-281 4-30 (171)
387 2qby_B CDC6 homolog 3, cell di 55.9 12 0.00042 34.4 4.9 37 184-220 26-62 (384)
388 2chq_A Replication factor C sm 55.9 8.7 0.0003 34.2 3.8 40 255-294 40-81 (319)
389 1u8z_A RAS-related protein RAL 55.8 5.6 0.00019 31.3 2.2 20 256-275 7-26 (168)
390 2fg5_A RAB-22B, RAS-related pr 55.7 4.4 0.00015 33.7 1.6 21 255-275 25-45 (192)
391 2hnk_A SAM-dependent O-methylt 55.7 17 0.00059 31.4 5.6 70 44-126 146-215 (239)
392 1fzq_A ADP-ribosylation factor 55.6 4.4 0.00015 33.5 1.6 20 255-274 18-37 (181)
393 1kao_A RAP2A; GTP-binding prot 55.2 5.8 0.0002 31.2 2.2 21 256-276 6-26 (167)
394 2fn4_A P23, RAS-related protei 55.1 6 0.0002 31.8 2.3 22 255-276 11-32 (181)
395 1v5w_A DMC1, meiotic recombina 55.0 14 0.00046 34.7 5.1 47 254-300 123-175 (343)
396 2bme_A RAB4A, RAS-related prot 54.9 4.7 0.00016 32.9 1.6 21 255-275 12-32 (186)
397 1ixz_A ATP-dependent metallopr 54.9 5.9 0.0002 34.8 2.4 31 256-289 52-82 (254)
398 1tq4_A IIGP1, interferon-induc 54.6 6.1 0.00021 38.7 2.7 36 239-276 57-92 (413)
399 1sxj_C Activator 1 40 kDa subu 54.5 6.6 0.00022 36.3 2.8 24 256-279 49-72 (340)
400 1oxx_K GLCV, glucose, ABC tran 54.5 5.3 0.00018 38.2 2.1 23 255-277 33-55 (353)
401 2nzj_A GTP-binding protein REM 54.4 6 0.00021 31.6 2.2 19 256-274 7-25 (175)
402 3io3_A DEHA2D07832P; chaperone 54.3 14 0.00048 35.1 5.1 48 252-299 17-66 (348)
403 3kkq_A RAS-related protein M-R 54.3 4.6 0.00016 32.9 1.5 22 255-276 20-41 (183)
404 2woj_A ATPase GET3; tail-ancho 54.3 14 0.00047 35.0 5.0 50 251-300 16-67 (354)
405 1c4o_A DNA nucleotide excision 54.3 21 0.00073 36.7 6.8 21 284-304 55-75 (664)
406 1inl_A Spermidine synthase; be 54.2 10 0.00035 34.8 4.0 38 43-80 161-206 (296)
407 2gza_A Type IV secretion syste 54.2 5.7 0.0002 37.7 2.3 34 255-289 177-210 (361)
408 3t5g_A GTP-binding protein RHE 54.2 4.9 0.00017 32.7 1.6 20 255-274 8-27 (181)
409 2wji_A Ferrous iron transport 54.0 6.1 0.00021 32.0 2.2 21 255-275 5-25 (165)
410 2r8r_A Sensor protein; KDPD, P 54.0 19 0.00064 32.6 5.6 36 255-290 8-43 (228)
411 1c1y_A RAS-related protein RAP 54.0 6.2 0.00021 31.2 2.2 20 256-275 6-25 (167)
412 3bwd_D RAC-like GTP-binding pr 53.8 4.8 0.00016 32.6 1.5 19 256-274 11-29 (182)
413 2fna_A Conserved hypothetical 53.7 9.1 0.00031 34.5 3.5 17 204-220 31-47 (357)
414 1z0f_A RAB14, member RAS oncog 53.7 6.3 0.00021 31.6 2.2 22 255-276 17-38 (179)
415 1lw7_A Transcriptional regulat 53.6 5.3 0.00018 37.6 2.0 27 252-278 169-195 (365)
416 4bas_A ADP-ribosylation factor 53.6 4.8 0.00016 33.2 1.5 20 255-274 19-38 (199)
417 3bh0_A DNAB-like replicative h 53.6 11 0.00038 34.9 4.1 36 254-289 69-104 (315)
418 2qby_A CDC6 homolog 1, cell di 53.5 7.3 0.00025 35.5 2.9 22 200-221 42-63 (386)
419 2hxs_A RAB-26, RAS-related pro 53.5 4.9 0.00017 32.4 1.5 20 255-274 8-27 (178)
420 3njr_A Precorrin-6Y methylase; 53.5 15 0.0005 31.5 4.7 38 45-84 122-159 (204)
421 2b6h_A ADP-ribosylation factor 53.3 4.7 0.00016 33.7 1.4 19 255-273 31-49 (192)
422 2fhp_A Methylase, putative; al 53.3 6 0.00021 32.4 2.1 44 43-86 114-161 (187)
423 1m2o_B GTP-binding protein SAR 53.1 6.8 0.00023 32.7 2.4 21 255-275 25-45 (190)
424 2fsf_A Preprotein translocase 53.0 14 0.00047 39.8 5.2 54 257-311 91-144 (853)
425 2lkc_A Translation initiation 53.0 6.3 0.00021 31.7 2.1 21 255-275 10-30 (178)
426 2vp4_A Deoxynucleoside kinase; 53.0 4.4 0.00015 35.5 1.2 30 255-289 22-51 (230)
427 2pt7_A CAG-ALFA; ATPase, prote 53.0 4.6 0.00016 38.0 1.5 35 255-290 173-207 (330)
428 2g6b_A RAS-related protein RAB 52.9 5.1 0.00017 32.3 1.5 20 256-275 13-32 (180)
429 3con_A GTPase NRAS; structural 52.8 5.1 0.00017 32.9 1.5 22 255-276 23-44 (190)
430 2fu5_C RAS-related protein RAB 52.7 4.3 0.00015 33.0 1.1 20 255-274 10-29 (183)
431 1ihu_A Arsenical pump-driving 52.7 15 0.00051 36.9 5.3 37 253-289 8-44 (589)
432 2h57_A ADP-ribosylation factor 52.5 5.3 0.00018 32.9 1.6 21 256-276 24-44 (190)
433 1svm_A Large T antigen; AAA+ f 52.5 7.4 0.00025 37.6 2.9 24 254-277 170-193 (377)
434 1f6b_A SAR1; gtpases, N-termin 52.4 5.3 0.00018 33.7 1.6 20 255-274 27-46 (198)
435 1ak2_A Adenylate kinase isoenz 52.4 7.6 0.00026 33.8 2.7 23 255-277 18-40 (233)
436 4dsu_A GTPase KRAS, isoform 2B 52.4 6.7 0.00023 31.8 2.2 21 256-276 7-27 (189)
437 1z06_A RAS-related protein RAB 52.4 5.2 0.00018 33.0 1.5 21 255-275 22-42 (189)
438 3vkw_A Replicase large subunit 52.2 6.2 0.00021 39.3 2.3 44 254-303 162-205 (446)
439 1iy2_A ATP-dependent metallopr 52.2 6.8 0.00023 35.1 2.4 32 255-289 75-106 (278)
440 2rcn_A Probable GTPase ENGC; Y 52.2 5.7 0.00019 38.3 1.9 24 254-277 216-239 (358)
441 3qf7_A RAD50; ABC-ATPase, ATPa 52.0 5 0.00017 38.2 1.5 19 254-272 24-42 (365)
442 2a5j_A RAS-related protein RAB 52.0 5.2 0.00018 33.1 1.5 20 255-274 23-42 (191)
443 3t1o_A Gliding protein MGLA; G 51.9 5.4 0.00018 32.6 1.5 17 255-271 16-32 (198)
444 3tui_C Methionine import ATP-b 51.8 10 0.00034 36.7 3.7 23 255-277 56-78 (366)
445 1h65_A Chloroplast outer envel 51.6 8.2 0.00028 34.5 2.8 33 243-275 28-61 (270)
446 3rht_A (gatase1)-like protein; 51.5 13 0.00044 34.2 4.2 61 19-80 20-87 (259)
447 1uaa_A REP helicase, protein ( 51.5 11 0.00037 38.5 4.1 30 182-220 3-32 (673)
448 1vg8_A RAS-related protein RAB 51.4 7 0.00024 32.4 2.2 22 255-276 10-31 (207)
449 3tqc_A Pantothenate kinase; bi 51.3 7.9 0.00027 36.6 2.8 24 255-278 94-117 (321)
450 3dz8_A RAS-related protein RAB 51.2 5.7 0.0002 32.9 1.6 22 256-277 26-47 (191)
451 2atv_A RERG, RAS-like estrogen 51.1 5.6 0.00019 33.1 1.5 21 255-275 30-50 (196)
452 3fwy_A Light-independent proto 51.1 12 0.00042 34.9 4.1 33 255-288 50-82 (314)
453 2bcg_Y Protein YP2, GTP-bindin 51.1 5.8 0.0002 33.2 1.6 21 255-275 10-30 (206)
454 3gd7_A Fusion complex of cysti 51.0 11 0.00038 36.5 3.9 33 255-289 49-81 (390)
455 2h92_A Cytidylate kinase; ross 51.0 7.6 0.00026 33.1 2.4 23 255-277 5-27 (219)
456 2gf9_A RAS-related protein RAB 50.8 5.7 0.00019 32.7 1.5 21 255-275 24-44 (189)
457 1zj6_A ADP-ribosylation factor 50.8 5.9 0.0002 32.6 1.6 20 255-274 18-37 (187)
458 3nh6_A ATP-binding cassette SU 50.7 6.4 0.00022 36.9 2.0 23 255-277 82-104 (306)
459 3c3p_A Methyltransferase; NP_9 50.7 9.5 0.00032 32.3 3.0 36 42-78 124-159 (210)
460 2a9k_A RAS-related protein RAL 50.7 5.8 0.0002 32.1 1.5 21 255-275 20-40 (187)
461 3tkl_A RAS-related protein RAB 50.6 5.7 0.0002 32.6 1.5 21 255-275 18-38 (196)
462 1w5s_A Origin recognition comp 50.6 11 0.00038 35.0 3.7 37 185-221 29-70 (412)
463 2gco_A H9, RHO-related GTP-bin 50.5 5.9 0.0002 33.2 1.6 21 255-275 27-47 (201)
464 3tqf_A HPR(Ser) kinase; transf 50.5 7.3 0.00025 34.3 2.2 21 255-275 18-38 (181)
465 1ksh_A ARF-like protein 2; sma 50.5 5.8 0.0002 32.4 1.5 20 255-274 20-39 (186)
466 3llu_A RAS-related GTP-binding 50.3 6 0.00021 33.0 1.6 17 255-271 22-38 (196)
467 3cph_A RAS-related protein SEC 50.2 5.8 0.0002 33.1 1.5 20 255-274 22-41 (213)
468 3mti_A RRNA methylase; SAM-dep 50.1 17 0.00059 29.7 4.5 41 41-81 85-137 (185)
469 3q9l_A Septum site-determining 50.0 14 0.00048 32.0 4.1 45 254-299 4-50 (260)
470 2iwr_A Centaurin gamma 1; ANK 50.0 5.2 0.00018 32.4 1.1 21 255-275 9-29 (178)
471 2bov_A RAla, RAS-related prote 49.9 6 0.0002 32.8 1.5 21 255-275 16-36 (206)
472 1l3i_A Precorrin-6Y methyltran 49.9 9.7 0.00033 30.9 2.8 40 44-83 99-138 (192)
473 2il1_A RAB12; G-protein, GDP, 49.8 6 0.00021 32.9 1.5 20 256-275 29-48 (192)
474 3c3y_A Pfomt, O-methyltransfer 49.8 6.1 0.00021 34.8 1.6 36 43-78 145-180 (237)
475 3ch4_B Pmkase, phosphomevalona 49.7 9.4 0.00032 33.9 2.9 24 254-277 12-35 (202)
476 3def_A T7I23.11 protein; chlor 49.7 10 0.00035 33.7 3.2 36 240-275 22-58 (262)
477 3ld9_A DTMP kinase, thymidylat 49.7 25 0.00085 31.3 5.7 36 255-291 23-61 (223)
478 1odf_A YGR205W, hypothetical 3 49.6 9.8 0.00033 35.1 3.1 27 255-281 33-59 (290)
479 3hjn_A DTMP kinase, thymidylat 49.3 28 0.00095 29.9 5.8 32 256-288 3-34 (197)
480 2p5s_A RAS and EF-hand domain 49.3 6.1 0.00021 33.0 1.5 20 255-274 30-49 (199)
481 1xp8_A RECA protein, recombina 49.3 17 0.00059 34.7 4.9 38 254-291 75-112 (366)
482 1mh1_A RAC1; GTP-binding, GTPa 49.3 8.1 0.00028 31.2 2.2 20 256-275 8-27 (186)
483 2gf0_A GTP-binding protein DI- 49.3 8.3 0.00028 31.7 2.3 21 255-275 10-30 (199)
484 1tf7_A KAIC; homohexamer, hexa 49.3 14 0.00048 36.7 4.4 47 254-302 282-328 (525)
485 4djt_A GTP-binding nuclear pro 49.0 6.2 0.00021 33.3 1.5 20 255-274 13-32 (218)
486 1g8p_A Magnesium-chelatase 38 49.0 7.5 0.00026 35.4 2.2 25 254-278 46-70 (350)
487 1mjf_A Spermidine synthase; sp 49.0 12 0.00041 33.9 3.6 44 37-80 142-194 (281)
488 1dek_A Deoxynucleoside monopho 49.0 8.7 0.0003 34.8 2.6 36 255-296 3-38 (241)
489 1a5t_A Delta prime, HOLB; zinc 49.0 14 0.00048 34.2 4.1 37 184-220 5-41 (334)
490 1zbd_A Rabphilin-3A; G protein 48.9 6.3 0.00022 32.8 1.5 20 256-275 11-30 (203)
491 2q3h_A RAS homolog gene family 48.9 6.3 0.00022 32.7 1.5 20 255-274 22-41 (201)
492 2oil_A CATX-8, RAS-related pro 48.9 8 0.00027 31.8 2.2 21 255-275 27-47 (193)
493 1x3s_A RAS-related protein RAB 48.8 6.4 0.00022 32.2 1.5 21 255-275 17-37 (195)
494 1pjr_A PCRA; DNA repair, DNA r 48.8 14 0.00049 38.2 4.5 38 181-227 11-48 (724)
495 2f6r_A COA synthase, bifunctio 48.7 8 0.00027 35.2 2.3 20 255-274 77-96 (281)
496 3bos_A Putative DNA replicatio 48.6 13 0.00045 31.3 3.6 33 187-220 37-69 (242)
497 3c5c_A RAS-like protein 12; GD 48.5 6.5 0.00022 32.6 1.5 21 255-275 23-43 (187)
498 3ihw_A Centg3; RAS, centaurin, 48.3 6.5 0.00022 32.7 1.5 22 255-276 22-43 (184)
499 1ltq_A Polynucleotide kinase; 48.3 9.1 0.00031 34.4 2.6 22 255-276 4-25 (301)
500 2efe_B Small GTP-binding prote 48.2 8.5 0.00029 31.0 2.2 21 255-275 14-34 (181)
No 1
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=100.00 E-value=4.3e-42 Score=358.16 Aligned_cols=201 Identities=21% Similarity=0.267 Sum_probs=154.7
Q ss_pred ccceeehhhhhhhcccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcc
Q psy18105 29 NIRYTYYSETHKILGNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVV 108 (333)
Q Consensus 29 ~i~~~~yk~a~~lLGqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~ 108 (333)
.+++|+|++++++|||||+++|||++++|+||+||+++|||+|||++|||+|+|++|+++++ .++.||....+.+++
T Consensus 56 ~~~~~~~~~~~~~LG~e~~~~v~d~~~~~~pn~la~~~gtv~gGG~lvll~p~~~~w~~~~d---~~~~r~~~~~~~~~~ 132 (671)
T 2zpa_A 56 AENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWLVLLLPVWEEWENQPD---ADSLRWSDCPDPIAT 132 (671)
T ss_dssp ----------CCTTTCCBSSEEEECSSCCCHHHHHHHHTTBCTTCEEEEEESCGGGTTTSCB---GGGHHHHCCSSCBCC
T ss_pred cccccCHHHHHHhhCCccCEEEEEcCCCCCHHHHHHHhhheecceEEEEEcCChhhhhhcCC---hhhhccccccCCccc
Confidence 45899999999999999999999999999999999999999999999999999999999853 445666666778899
Q ss_pred hhHHHHHHHhhhcCCceEEEeCCCCccccccccccccccCCCCCcchhhHHHHHHhhhccccCCcchhhhccCCCHHHHH
Q psy18105 109 CRFNERFLLSLSSCNRCLVVDDQLTVLPITSQHVLNITPVSKTSDLSQQEQELNALKTSLKDTQPVSALIDCCKTLDQGK 188 (333)
Q Consensus 109 ~rF~~Rf~~~L~~~~~~~i~d~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~T~dQ~~ 188 (333)
|||++||+++|.+|+++++++++.. +|++. .++. .++.+ +.+|+|.||++
T Consensus 133 ~~F~~rf~~~l~~~~~~~~~~~~~~-~~~~~--------~~~~-----------------~~~~~----~~~~~T~dQ~~ 182 (671)
T 2zpa_A 133 PHFVQHLKRVLTADNEAILWRQNQP-FSLAH--------FTPR-----------------TDWYP----ATGAPQPEQQQ 182 (671)
T ss_dssp HHHHHHHHHHHTSSSSSEEEETTSC-CCCCC--------CCCC-----------------CCCCC----CCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhCCCeEEEcCCCC-ccCCC--------CCCC-----------------ccccC----CCCCCCHHHHH
Confidence 9999999999999999999997632 23211 1111 01222 24799999999
Q ss_pred HHHHHHHHHhhhcccceeeEEecCCCChhhhhhhhhhhhhhcccchhhhhhhhhhhhccchhccccceeeeeccCCCchh
Q psy18105 189 ALLKFIDSISEKTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268 (333)
Q Consensus 189 al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaLGla~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~vltA~RGRGKSa 268 (333)
++++|++.. .| .+||||+|||||||
T Consensus 183 al~~~~~~~--------------~~-----------------------------------------~~vlta~RGRGKSa 207 (671)
T 2zpa_A 183 LLKQLMTMP--------------PG-----------------------------------------VAAVTAARGRGKSA 207 (671)
T ss_dssp HHHHHTTCC--------------SE-----------------------------------------EEEEEECTTSSHHH
T ss_pred HHHHHHHhh--------------hC-----------------------------------------eEEEecCCCCCHHH
Confidence 998887431 12 36899999999999
Q ss_pred HHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchh------cccccccceEEEe
Q psy18105 269 ALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDA------LAYQEHLDYSIVQ 321 (333)
Q Consensus 269 llGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~------lg~~~~~d~~~i~ 321 (333)
++|++++++.. +++||||+++|+++||+|+.+.++- +...++.|+.||.
T Consensus 208 ~lG~~~a~~~~----~~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVD 262 (671)
T 2zpa_A 208 LAGQLISRIAG----RAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVD 262 (671)
T ss_dssp HHHHHHHHSSS----CEEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEE
T ss_pred HHHHHHHHHHh----CcEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEE
Confidence 99999999973 5899999999999999999886542 1344567998885
No 2
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.33 E-value=0.00046 Score=68.23 Aligned_cols=48 Identities=13% Similarity=0.319 Sum_probs=42.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
+++|+|..|.|||+++.-.++.+...|..+|+++||+..++..+-+.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 578889999999999999999999888778999999999998877654
No 3
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.29 E-value=0.00012 Score=76.75 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=20.9
Q ss_pred eEEecCCCChhhhhhhhhhhhhh
Q psy18105 207 SLTAARGRGKSAALGLAVAGAVA 229 (333)
Q Consensus 207 vlTAdRGRGKSAaLGla~~~~~~ 229 (333)
||||+||||||+++|++++.+..
T Consensus 196 vlta~RGRGKSa~lG~~~a~~~~ 218 (671)
T 2zpa_A 196 AVTAARGRGKSALAGQLISRIAG 218 (671)
T ss_dssp EEEECTTSSHHHHHHHHHHHSSS
T ss_pred EEecCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999998743
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.72 E-value=0.0029 Score=65.22 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+.+|.|+-|-|||+++--++++++..|. +|+||||+..+|..+.+-+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEcCchHHHHHHHHHHH
Confidence 4788999999999988888888888774 89999999999999987653
No 5
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.85 E-value=0.013 Score=60.27 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=40.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+.+|+|+-|.|||+++--+++.+......+|+||||+..++..+.+-+.+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46788888999998888788887764455899999999999999877643
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.55 E-value=0.016 Score=59.31 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=39.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
.++|+|.-|.|||+++.-.+..+...|. +|+++||+..++..+-+-.
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~-~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGL-EVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEecCcHHHHHHhHhhh
Confidence 4788888888999988888888887775 8999999999999887643
No 7
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.49 E-value=0.021 Score=60.80 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=40.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
..+|+|+-|.|||+++--+++.++.....+|+||||+..++..+.+-+.+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 46788888999998888788888764456899999999999999887643
No 8
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.22 E-value=0.072 Score=47.00 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc---CCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF---GYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~---g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
+++.|+-|.|||.+..+.+...+.. ...+++|.+|..+-+..+++.+.+-++..|
T Consensus 69 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 69 LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 5667777777777666665555432 233799999999999999888776555444
No 9
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.16 E-value=0.033 Score=57.22 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=38.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHc---CCceEEEeCCChhhHHHHHHHHHh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAF---GYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~---g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.++|+|.-|.|||+++.-+++.+... ...+|+++||+..++..+-+-+..
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 57788888888888888777777642 224899999999999998776554
No 10
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.023 Score=60.51 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=40.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+.+|.|+-|.|||+++--+++.++.....+|+||||+..++..+.+-+.+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 46788888888888888778777764345899999999999999876643
No 11
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.98 E-value=0.094 Score=46.42 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=37.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc-------CCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF-------GYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~-------g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|..+-+..+.+.+.+-+...|
T Consensus 69 ~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 130 (242)
T 3fe2_A 69 MVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR 130 (242)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 5666777777776656555544431 234799999999999999887776554444
No 12
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.82 E-value=0.11 Score=46.52 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=36.6
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC--CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG--YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g--~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+.+...+..+ ..+++|.+|+.+-+..+.+.+.+-..
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 136 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 136 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 56777778888876666665544332 34799999999998888876655433
No 13
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.08 Score=47.88 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=38.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc------CCceEEEeCCChhhHHHHHHHHHhcchhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF------GYSNIFVTSPSPENLNTFFQFIFKGFDAL 309 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~------g~~~I~VTAPs~~~v~tlf~fa~~~L~~l 309 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|..+-++..++.+.+-+...
T Consensus 94 ~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 153 (262)
T 3ly5_A 94 LLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH 153 (262)
T ss_dssp CEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC
T ss_pred EEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 5667777777777666665554432 23479999999999999988877755433
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.68 E-value=0.1 Score=44.39 Aligned_cols=51 Identities=22% Similarity=0.144 Sum_probs=35.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHH-----cCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVA-----FGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~-----~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+...+. .+..+++|.+|+.+-+....+.+.+-.
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 566677777777666666555543 123479999999999888887766543
No 15
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=94.53 E-value=0.13 Score=46.74 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=36.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.+|.|+-|-|||.+.-+++...+..+..+++|.+|..+-++...+-+.+
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3567888888888776666666666666899999999888777665544
No 16
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.45 E-value=0.14 Score=44.79 Aligned_cols=51 Identities=25% Similarity=0.200 Sum_probs=34.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHH------cCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVA------FGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~------~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+...+. ....+++|.+|+.+-+...++.+.+-.
T Consensus 65 ~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 566777777777665655544432 123479999999999988887766543
No 17
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.27 E-value=0.12 Score=44.79 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=35.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+..+.+...+.. ...+++|.+|+.+-+..+.+.+.+-.
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 5667777777776656655554432 23479999999999888887665533
No 18
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.21 E-value=0.051 Score=45.84 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=26.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH-HcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV-AFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~-~~g~~~I~VTAP 290 (333)
.++|+|+.|.|||+++=..+..+. ..|..-++++.+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 578899999999999887777776 556555666543
No 19
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.16 E-value=0.16 Score=43.97 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=34.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-+...++.+.+-.
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 5667777777776656655555432 23479999999999888877665543
No 20
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.07 E-value=0.18 Score=43.91 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=32.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHH--------cCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVA--------FGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~--------~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+.-+.+...+. ....+++|.+|+.+-+.++.+.+.+
T Consensus 60 ~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 60 LIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 456666666666655554443332 1334799999999999888877655
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.94 E-value=0.23 Score=42.16 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=35.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+....+.+.+-.+
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 5667777777776555555444422 234799999999998888776655443
No 22
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.93 E-value=0.14 Score=54.29 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=42.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
.+|.|+-|.|||...-+++...+..|. +++|.+|..+-+...++-+.+-+..+|
T Consensus 392 ~Ll~a~TGSGKTlvall~il~~l~~g~-qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 392 RLLQGDVGSGKTVVAQLAILDNYEAGF-QTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp CEEECCSSSSHHHHHHHHHHHHHHHTS-CEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 677888888888888888877776664 799999999988888877766554433
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.89 E-value=0.19 Score=47.16 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=40.0
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|..+-+..+.+.+.+-.+..+
T Consensus 80 ~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 80 VIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp EEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred EEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 5677888888887767766665543 334799999999999888887776544333
No 24
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.86 E-value=0.13 Score=45.43 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=36.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+.++.+.+.+-..
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhh
Confidence 5667777788876655555554432 234899999999999988877765443
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.85 E-value=0.16 Score=43.86 Aligned_cols=49 Identities=22% Similarity=0.162 Sum_probs=34.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-+....+.+.+
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 5667777777776656666555433 234899999999988888766554
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.84 E-value=0.17 Score=46.77 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=37.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+....+.+.+-.
T Consensus 47 ~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 47 MIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 6778888888887777666655432 23479999999999988887766533
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.097 Score=57.65 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=45.0
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
+++.|+-|.|||....+++...+..|. +++||+|.++-+.+.++.+.+.+...|
T Consensus 202 vLV~ApTGSGKTlva~l~i~~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~~~Vg 255 (1108)
T 3l9o_A 202 VLVSAHTSAGKTVVAEYAIAQSLKNKQ-RVIYTSPIKALSNQKYRELLAEFGDVG 255 (1108)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTSSEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHHHhCCcc
Confidence 678899999999988999888887654 899999999999999988877665444
No 28
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.71 E-value=0.27 Score=43.51 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=32.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc-----------CCceEEEeCCChhhHHHHHHHHHhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF-----------GYSNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~-----------g~~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+...++.+.+-
T Consensus 63 ~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 63 IMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4556666666666555555444432 1247999999999998888766543
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.67 E-value=0.14 Score=48.65 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=35.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||. ..+..+........+++|.+|..+-+....+.+.+
T Consensus 39 ~lv~apTGsGKT~-~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 39 FTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp EECCSCSSSSHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHH-HHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 6778888888888 45444433333445899999999999999887776
No 30
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.56 E-value=0.11 Score=45.98 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=41.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH-cC---CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA-FG---YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~-~g---~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
.+++.|+-|.|||+++-+.+..... .+ ..++++++|..+.+.++++...+.+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 5899999999999988777665433 22 23799999999999999877765544
No 31
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.43 E-value=0.21 Score=45.64 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=36.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+..++.. +..+++|.+|+.+-+....+.+.+-+
T Consensus 47 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 47 IVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 5667777778877666666665543 33479999999998888887766543
No 32
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.34 E-value=0.21 Score=46.68 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=36.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcchhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGFDAL 309 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L~~l 309 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-+...++.+.+-...+
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC 116 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 5667777777776655555554432 23479999999999988887776644433
No 33
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.04 E-value=0.25 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=19.5
Q ss_pred ceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 283 SNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 283 ~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
.+++|.+|+.+-+..+++.+.+-.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFS 125 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHh
Confidence 469999999999999888776543
No 34
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.03 E-value=0.14 Score=47.47 Aligned_cols=49 Identities=22% Similarity=0.146 Sum_probs=35.7
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHc------CCceEEEeCCChhhHHHHHHH
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAF------GYSNIFVTSPSPENLNTFFQF 301 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~------g~~~I~VTAPs~~~v~tlf~f 301 (333)
..+++|+|++|-|||+++-..+..+... +..-++|.++...+...++..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 4589999999999999999888777543 444577887765554444433
No 35
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.84 E-value=0.29 Score=47.90 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=37.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.+|.|+-|-|||...-+++...+..+..+++|.+|..+-++..++-+.+
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH
Confidence 5677888888888777777666666666999999999888777765543
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.78 E-value=0.084 Score=45.17 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+++|+|+.|.|||+++-..+..+...|..-++|++|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6899999999999999988888887767666677775
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.68 E-value=0.42 Score=46.37 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=39.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC----CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG----YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g----~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||....+.+...+..+ ..+++|.+|..+-+...++.+.+-+.
T Consensus 22 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 22 TIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 56778888888888788887777653 45799999999888877776666444
No 38
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.66 E-value=0.3 Score=45.62 Aligned_cols=50 Identities=26% Similarity=0.212 Sum_probs=36.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|+.+-+....+.+.+-
T Consensus 67 ~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 67 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 6777888888887766666555443 2237999999999999887766553
No 39
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.66 E-value=0.37 Score=46.61 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=35.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHH-Hc------CCceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAV-AF------GYSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~-~~------g~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+.+...+ .. +..+++|.+|+.+-+..+++.+.+-..
T Consensus 96 ~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 154 (434)
T 2db3_A 96 LMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 154 (434)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhc
Confidence 56677777777776565444333 22 234799999999999999887766443
No 40
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.57 E-value=0.12 Score=47.84 Aligned_cols=42 Identities=10% Similarity=0.297 Sum_probs=31.4
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHc---CCceEEEeCCChhh
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAF---GYSNIFVTSPSPEN 294 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~---g~~~I~VTAPs~~~ 294 (333)
...++|+|++|-|||+++=.++..+... +..-++|.++....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3579999999999999999887777654 45557777554333
No 41
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.42 E-value=0.42 Score=41.79 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.6
Q ss_pred eeeeeccCCCchhHHHHHHHHHHH--cCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVA--FGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~--~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+..+.+...+. ....+++|.+|+.+-+...++.+.+
T Consensus 64 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 64 LIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 566777777777665555544432 1234899999999988888876654
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.36 E-value=0.14 Score=42.83 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=32.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP 292 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~ 292 (333)
++.|+|+.|.|||+|+-+++..+...|+..+++++...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 68899999999999999999888777766788877643
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.26 Score=53.76 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=41.7
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDA 308 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~ 308 (333)
++|.|+-|.|||....+++...+..| .++++++|.++-+...++-+.+.+..
T Consensus 104 vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~~~~ 155 (1010)
T 2xgj_A 104 VLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFGD 155 (1010)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHHhCC
Confidence 67788888899888888888877665 48999999999888888776665443
No 44
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.29 E-value=0.52 Score=45.93 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=39.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC----CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG----YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g----~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|-|||....+.+...+..+ ..+++|.+|..+=+...++.+.+-+.
T Consensus 25 ~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 25 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 56778888888877788877776653 45799999999888888777666444
No 45
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.24 E-value=0.2 Score=46.55 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeCCChhhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
.++|+|++|-|||+++-..+..+... +..-+++.+....+...++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 79999999999999998877776654 44457777666555555554443
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.20 E-value=0.18 Score=43.38 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=31.5
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
..+++|+|+.|.|||+++-..+..+...++.-+++++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 478999999999999999988888877666556666543
No 47
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.15 E-value=0.2 Score=51.15 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
+..++.+.||-|||+++...+...+.. +..+|+++||+.+.+..+|+.+..-++.++
T Consensus 179 r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 568999999999999987655554444 334899999999999999988877777654
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.10 E-value=0.24 Score=51.09 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=43.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
-++|.|+-|.|||+..-+++...+.....+|++++|.++-+...++-. +.+..+|
T Consensus 48 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~-~~~~~~g 102 (715)
T 2va8_A 48 RLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF-KDWELIG 102 (715)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH-GGGGGGT
T ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH-HHhhcCC
Confidence 489999999999999998887666532358999999999888888776 3444443
No 49
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=91.83 E-value=0.62 Score=42.03 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=32.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||.+.-+.+.. .+ .+++|.+|..+-+....+.+.+-.
T Consensus 34 ~lv~~~TGsGKT~~~~~~~~~---~~-~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 34 VVVRAKTGSGKTAAYAIPILE---LG-MKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp EEEECCTTSSHHHHHHHHHHH---HT-CCEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCcHHHHHHHHHHh---hc-CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 567777788887654443332 23 379999999999888887766533
No 50
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.81 E-value=0.31 Score=45.21 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.0
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+....+.+.+-+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF 114 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 5667777888887656665555432 234799999999988888776655443
No 51
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.76 E-value=0.46 Score=44.67 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.2
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+.-+.+...+.. ...+++|.+|+.+-+....+.+.+
T Consensus 77 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 77 VIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH
Confidence 5666777777776656655555431 334899999999988888876655
No 52
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.70 E-value=0.36 Score=43.09 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=30.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.+|.|+-|.|||.++-.++..+ + .+++|.+|+.+-++...+.+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~-~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---S-TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---C-SCEEEEESSHHHHHHHHHHHGG
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---C-CCEEEEeCCHHHHHHHHHHHHh
Confidence 5667777778877655544433 2 3688889998877776665544
No 53
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.57 E-value=0.15 Score=44.19 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=24.9
Q ss_pred ceeeeeccCCCchhHH-HHHHHHHHHcCCceEEEeCCChh
Q psy18105 255 TVSLTAARGRGKSAAL-GLAVAGAVAFGYSNIFVTSPSPE 293 (333)
Q Consensus 255 ~~vltA~RGRGKSall-Gla~a~~~~~g~~~I~VTAPs~~ 293 (333)
..++||+||.||||+| +++. .+...|. ++++-.|..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~-~~~~~g~-~v~~~~~~~d 42 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE-IYKLGKK-KVAVFKPKID 42 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHHHTTC-EEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHCCC-eEEEEeeccc
Confidence 5789999999999997 5554 4444465 5555556543
No 54
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.49 E-value=0.49 Score=47.48 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=37.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC------CceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG------YSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g------~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+..+.+...+..+ ..+++|.+|..+-+.++.+.+.+
T Consensus 63 vlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 63 VIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 67778888888887777766665433 23799999999998888877665
No 55
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.44 E-value=0.26 Score=48.18 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=49.8
Q ss_pred hhhhhhccchhccccceeeeeccCCCchhHHHHHHHHH-HHcCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 240 LLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 240 ~~~~~~~~~~~~~~~~~vltA~RGRGKSallGla~a~~-~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
|+.+++.+. .++..++...|+-|||+++...+... +..+..+|+++||+.+.+..+|+.+..-++.+.
T Consensus 168 Qk~il~~l~---~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 168 QRDMLKIMS---SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp HHHHHHHHH---HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhc---cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 444555442 23568999999999999977666553 333345899999999999999988877666543
No 56
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.34 E-value=0.57 Score=51.70 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=38.6
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDA 308 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~ 308 (333)
.+|.|+-|-|||...-+++-.++..|. +++|.+|+.+-+++.++-+.+.+..
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~-~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHK-QVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-eEEEEechHHHHHHHHHHHHHHhhc
Confidence 577888888888766656555555554 8999999999888888777665543
No 57
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.25 E-value=0.55 Score=46.54 Aligned_cols=50 Identities=16% Similarity=0.087 Sum_probs=37.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCC------ceEEEeCCChhhHHHHHHHHHhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGY------SNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~------~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
+++.|+-|.|||.+.-+.+...+..+. .+++|.+|..+-+..+++.+.+-
T Consensus 114 ~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 114 VIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHH
Confidence 667788888888776776665554332 37999999999999888877663
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.18 E-value=0.32 Score=51.41 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=38.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH-cC-CceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA-FG-YSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~-~g-~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
.++|+|+-|.|||+++-+++..... .+ ..+|+|++|..+.+..+.+.+.+.+
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHh
Confidence 5788999999999987776544321 11 3469999999999988887665544
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.10 E-value=0.19 Score=46.81 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=30.6
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHc--------CCceEEEeCCChh
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAF--------GYSNIFVTSPSPE 293 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~--------g~~~I~VTAPs~~ 293 (333)
.+.++|+|++|-|||+++-.++..+... +..-++|.+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 3579999999999999998877776544 5555777655433
No 60
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.09 E-value=0.36 Score=46.88 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=35.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC--CceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG--YSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g--~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||.+.-+++...+..+ ..+++|.+|..+-+..+++.+.+
T Consensus 134 ~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 134 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp EEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 66777777777777666666555432 23799999999999988766544
No 61
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.07 E-value=0.23 Score=51.31 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=43.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH-cCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA-FGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~-~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
-++|.|+-|.|||...-+++...+. .| .++++++|.++-+...++-+ +.+..+|
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~~-~~~l~i~P~raLa~q~~~~~-~~l~~~g 95 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQG-GKAVYIVPLKALAEEKFQEF-QDWEKIG 95 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHHC-SEEEEECSSGGGHHHHHHHT-GGGGGGT
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHHHH-HHHHhcC
Confidence 4889999999999998888876654 34 48999999999999998877 3444444
No 62
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=90.89 E-value=0.85 Score=49.60 Aligned_cols=50 Identities=26% Similarity=0.182 Sum_probs=38.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+++.|+-|.|||...-+++..+...| .+++|++|..+-+...++.+.+.+
T Consensus 57 vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 57 VFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp EEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHTTC
T ss_pred EEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHc
Confidence 67788888888876556666665544 489999999999999998877744
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=90.83 E-value=0.6 Score=43.15 Aligned_cols=50 Identities=26% Similarity=0.212 Sum_probs=34.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
+++.|+-|.|||.+.-+.+...+.. +..+++|.+|.++-+..+++.+.+-
T Consensus 134 ~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 134 LIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 5667777777777655555544432 2337999999999999887766553
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.79 E-value=0.27 Score=41.70 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=30.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC-----CceEEEeCCChhhHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG-----YSNIFVTSPSPENLNT 297 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g-----~~~I~VTAPs~~~v~t 297 (333)
++|.|+-|.|||.+.-+.+...+..+ ..+++|.+|+.+-+..
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHH
Confidence 56778888888877777666655431 3479999999887766
No 65
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.67 E-value=0.16 Score=47.57 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=32.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH-HcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV-AFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~-~~g~~~I~VTAP 290 (333)
.+++|+|+.|.|||+|+-..+..+. ..|+.-+++++|
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4799999999999999998888888 778766778876
No 66
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.47 E-value=0.85 Score=46.34 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=37.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCC----ceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGY----SNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~----~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
++|.|+-|-|||....+.+...+..+. .+++|.+|..+-+....+.+.+-+
T Consensus 31 ~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 31 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 677888888888887887776665432 589999999887777666665544
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.38 E-value=0.47 Score=47.59 Aligned_cols=44 Identities=14% Similarity=-0.029 Sum_probs=24.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC--------CceEEEeCCChhhHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG--------YSNIFVTSPSPENLNTFF 299 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g--------~~~I~VTAPs~~~v~tlf 299 (333)
.+|.++-|-|||.++-.++..++..+ ..+|+|.+|..+=+.+.+
T Consensus 201 ~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 201 SLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred eEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 45667777888877666666666543 357999999887766665
No 68
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.68 E-value=0.29 Score=45.97 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.0
Q ss_pred cceee--eeccCCCchhHHHHHHHHHHHc------CCceEEEeCCChhhHHHHHHH
Q psy18105 254 STVSL--TAARGRGKSAALGLAVAGAVAF------GYSNIFVTSPSPENLNTFFQF 301 (333)
Q Consensus 254 ~~~vl--tA~RGRGKSallGla~a~~~~~------g~~~I~VTAPs~~~v~tlf~f 301 (333)
..++| +|++|-|||+++-.++..+... +..-++|.+....+...++..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSL 106 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHH
Confidence 46888 9999999999999888776542 344577776444444444433
No 69
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.46 E-value=0.88 Score=42.12 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=35.0
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHHHHHhc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
+++.|+-|-|||.+.-+.+...+.. +..+++|.+|+.+-+....+.+.+-
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 5677778888886655555555432 3347999999999888877666553
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.35 E-value=0.94 Score=37.77 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=33.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCc--eEEEeCCChhhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYS--NIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~--~I~VTAPs~~~v~tlf~fa~ 303 (333)
+++|+|+.|-|||+++-..+..+...++. -+.+..........+.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 48999999999999998888777544322 35566665555555544433
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.21 E-value=0.4 Score=47.10 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=38.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+.+++.|+-|.|||.+..+.+...+.....+++|++|.++-+..+++-+.
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 57899999999999986655544333233589999999998888887653
No 72
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.91 E-value=0.33 Score=50.05 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=42.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhcc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALA 310 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg 310 (333)
-+++.|+-|.|||...-+++...+..| .++++++|.++-++..++-. +.+..+|
T Consensus 42 ~~lv~apTGsGKT~~~~l~il~~~~~~-~~~l~i~P~r~La~q~~~~~-~~~~~~g 95 (702)
T 2p6r_A 42 NLLLAMPTAAGKTLLAEMAMVREAIKG-GKSLYVVPLRALAGEKYESF-KKWEKIG 95 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHH-TTTTTTT
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhC-CcEEEEeCcHHHHHHHHHHH-HHHHhcC
Confidence 389999999999999988887766554 48999999999998888776 3344333
No 73
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.91 E-value=0.79 Score=38.42 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
++|+|.-|.||||++-+++..+...|+.-+....|.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 38 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC
Confidence 789999999999999999988877776444444444
No 74
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=88.82 E-value=0.61 Score=47.03 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=43.8
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcC---CceEEEeCCChhhHHHHHHHHHh
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFG---YSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g---~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
..|++|.|.-|.|||+++=--+++++..+ ..+|++++++..++..+-+-+.+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 47999999999999999999999999763 24899999999998887765543
No 75
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.67 E-value=1.4 Score=46.05 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=39.2
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC----CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG----YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g----~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|-|||....+.+...+..+ ..+++|.+|..+-+...++.+.+-+.
T Consensus 266 ~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 56778888888877788887777653 45899999999888887766655444
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.12 E-value=0.54 Score=38.30 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.0
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~ 279 (333)
..+++|+|++|.|||+++-.++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999887777754
No 77
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.46 E-value=0.27 Score=41.85 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
++++|+|+-|.||||++-+++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999888765
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=86.63 E-value=0.43 Score=43.41 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=24.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|+||-|||+|+--++..+ + -++|....
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 58899999999999998776653 3 56776543
No 79
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.33 E-value=0.87 Score=41.38 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=25.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|+||-|||+|+--++..+- ..-++|.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 589999999999999987776653 2247777653
No 80
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.13 E-value=0.64 Score=45.41 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=38.6
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+-+++.|+-|.|||.+.-+++...+..+..+++|.+|..+-+...++.+.
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh
Confidence 46899999999999997665555443344589999999998888886543
No 81
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.11 E-value=1.2 Score=37.78 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=29.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|.-|.||||+.-.++..+-..|+.-+.+..|.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~ 47 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE 47 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCC
Confidence 5899999999999999999988876676545555564
No 82
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.92 E-value=1 Score=40.96 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=35.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.+++|+|++|-|||+++-..+..+ +..-+++..+.......++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHHHHHH
Confidence 478999999999999998766654 344467777777766677665443
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.89 E-value=0.51 Score=38.54 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=31.8
Q ss_pred cccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh---hhHHHHHHHH
Q psy18105 252 LRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP---ENLNTFFQFI 302 (333)
Q Consensus 252 ~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~---~~v~tlf~fa 302 (333)
...|++|+|+.|-|||+++-.........+..=| |.+... .....+|+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a 75 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA 75 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc
Confidence 3469999999999999999876665544343334 544433 2344445444
No 84
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=85.89 E-value=1.3 Score=49.00 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=30.2
Q ss_pred eeeeccCCCchhHHHHHHHHHHHcCC-----ceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 257 SLTAARGRGKSAALGLAVAGAVAFGY-----SNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 257 vltA~RGRGKSallGla~a~~~~~g~-----~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+|+|.=|.||++.|=--+++++..|. .+|+|.+++..++..+.+-+...|.
T Consensus 27 ~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 27 LVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 33333334444443444555554432 4799999998888888776666543
No 85
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.60 E-value=0.4 Score=41.96 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
||+||+||-|.||||++-.+++..-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6999999999999999987776653
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.54 E-value=2.4 Score=39.59 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=27.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.|.|+.|.||||+++.++..+...+. +|.+-+-
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~ 136 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAG 136 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEee
Confidence 6789999999999999999988876543 5665543
No 87
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=85.54 E-value=1.5 Score=48.29 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=35.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+++.|+-|.|||. .++.++........+++|.+|..+-+.++++.+.+
T Consensus 96 vlv~ApTGSGKTl-~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 96 FTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp EEECCSTTCCHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHH-HHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 6778888888888 45444333323345899999999999999988777
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.53 E-value=0.99 Score=38.45 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=29.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
..++|+|+.|.|||+++-.++..+...+..-++++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 47899999999999999888877776554445555544
No 89
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=85.17 E-value=0.77 Score=44.86 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=36.1
Q ss_pred cceeeeeccCCCchhHHHHHH-HHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAV-AGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~-a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
..++++|+-|.|||.+.-+.+ ..+...| .+++|++|..+-++.+++.+
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHh
Confidence 456999999999999644443 3444444 58999999999888888755
No 90
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.85 E-value=0.44 Score=39.35 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+.|.||||++-+++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999988776654
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.79 E-value=2.6 Score=35.24 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+++|+|++|-|||+++=..+..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999987776664
No 92
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=84.65 E-value=1.7 Score=41.93 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=29.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.+|.|+-|-|||...-+++..+ + .+++|.+|+.+-+.+..+-+.+
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~---~-~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL---S-TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---C-SCEEEEESSHHHHHHHHHHGGG
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---C-CCEEEEECCHHHHHHHHHHHHh
Confidence 4667777777777655555443 3 3788889998776666554444
No 93
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=84.61 E-value=1.9 Score=46.27 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=37.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC----CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG----YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g----~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
.+|.|+-|-|||....+.+...+..+ ..+++|.+|+.+-+...++.+.+-+.
T Consensus 266 ~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 266 ALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 56677777777777777776666542 34799999999888877766655443
No 94
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.51 E-value=0.79 Score=42.18 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=29.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
+++|+|++|-|||+++=..+..+...+..-++|++..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 7999999999999999988888876555556676543
No 95
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=84.37 E-value=0.85 Score=46.37 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=35.5
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCC-----ceEEEeCCChhhHHHH-HHHHHh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGY-----SNIFVTSPSPENLNTF-FQFIFK 304 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~-----~~I~VTAPs~~~v~tl-f~fa~~ 304 (333)
++|.|+-|-|||....+.+...+..+. .+++|.+|..+-+... .+.+.+
T Consensus 25 ~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 25 IIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 677888888888888888877665431 4799999999776666 444333
No 96
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.19 E-value=0.93 Score=38.81 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=26.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.++|+|+.|.||||++-+++..+-..|...+++-
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 5889999999999999988888765565333543
No 97
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.17 E-value=0.97 Score=43.92 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=37.8
Q ss_pred cceeeeeccCCCchhHHHHHHH-HHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVA-GAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a-~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
+.+++.|+-|.|||.+.-+++. .++..| .+++|.+|..+-++++++.+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKR-LRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHh
Confidence 3588999999999998766555 455545 48999999999888877655
No 98
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.05 E-value=1.5 Score=40.87 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=41.2
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
.+|.++-|-|||....+++...+.....+++|.+|+.+-+....+-+.+-+
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 789999999999999888887765444589999999888877776665544
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.58 E-value=2.5 Score=43.42 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=29.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
.+++.|+-|-|||.+.-+.+-..+.....+|+|++|..+-.+.+++-+
T Consensus 24 ~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 24 GVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH
Confidence 356666667777654444333333222248999999999777776543
No 100
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=83.29 E-value=1.6 Score=47.57 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=48.9
Q ss_pred hhhhhhhhccchhccccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhccc
Q psy18105 238 KALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAY 311 (333)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg~ 311 (333)
.-|.+.|..+-+ .+-+++.|+-|.|||+ ..+.+...+.....+++|.+|..+-+..+++.+.+-+..+|.
T Consensus 59 ~iQ~~ai~~il~---g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 59 AIQKMWAKRILR---KESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp HHHHHHHHHHHT---TCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHh---CCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 445554444322 1468999999999997 666665555444458999999999999998887765554444
No 101
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=83.27 E-value=2.8 Score=48.30 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
+++.|+-|.|||.+.-+++.+.+.. ...++++++|.++-++..++-..+.+.
T Consensus 945 vlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 945 VFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 7789999999999999998887754 345899999999999998877665553
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.16 E-value=1 Score=38.99 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=28.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH-HcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV-AFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~-~~g~~~I~VTAPs 291 (333)
..+.|+|+.|.|||||+-+++.... ..+...++++...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3689999999999999998875444 4455556666543
No 103
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.14 E-value=0.7 Score=41.20 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=27.0
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
..|++|+|+.|-|||+++=..+..+...+..=+.|...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 47999999999999999876666554433334555544
No 104
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=83.01 E-value=1.7 Score=43.02 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=42.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC--CceEEEeCCChhhHHHHHHHHHhcch
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG--YSNIFVTSPSPENLNTFFQFIFKGFD 307 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g--~~~I~VTAPs~~~v~tlf~fa~~~L~ 307 (333)
-++|.|+-|.|||...-+++...+..+ ..+++|.+|..+-+...++.+.+-..
T Consensus 160 ~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp CEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 488999999999998777776665443 33799999999999988887766544
No 105
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.00 E-value=0.69 Score=37.75 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=24.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP 292 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~ 292 (333)
.++|+|..|.||||++-.++..+ |+ .++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~~ 35 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSSF 35 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eeecCccc
Confidence 47899999999999988777664 32 34666543
No 106
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.87 E-value=1.1 Score=40.35 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=27.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.++|+|..|.||||++-.++..+...|+.-|+++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5889999999999999999888776776544444
No 107
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.86 E-value=1.2 Score=37.23 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=25.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEE
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFV 287 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~V 287 (333)
.++|+|.-|.||||++-+++..+...|+.-|.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 578999999999999998888776556543433
No 108
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.67 E-value=2 Score=40.66 Aligned_cols=34 Identities=12% Similarity=0.307 Sum_probs=27.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
..+.|.|+-|.||||++..++..+...+. +|.+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEE
Confidence 47899999999999999999988877665 45443
No 109
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.53 E-value=2.1 Score=35.43 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=27.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|.-|.||||+.-+++..+-..|+.-|..-.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~ 38 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG 38 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3789999999999999999888866676433332443
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.50 E-value=1.8 Score=42.84 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC--hhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS--PENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs--~~~v~tlf~fa 302 (333)
..++++|+-|.||||+++-++..+...|+.-.+|++.. +.+++.+-.+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~ 148 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG 148 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHH
Confidence 46888999999999999999999988887445566553 23444444443
No 111
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.41 E-value=1.7 Score=40.40 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHH-cCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVA-FGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~-~g~~~I~VTA 289 (333)
..+.++|+-|.||||++..++..+.. .|+.=.+|++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 57889999999999999999988875 6753344444
No 112
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=82.27 E-value=1.1 Score=46.02 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=37.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
+-+++.|+-|.|||++..+.+...+..+..+++|++|.++-++.+++.+
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l 235 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEAL 235 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHh
Confidence 5789999999999998766444333333458999999999888888655
No 113
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=82.26 E-value=0.52 Score=41.28 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=12.9
Q ss_pred ceeeeeccCCCchhHHHHHH-HH
Q psy18105 255 TVSLTAARGRGKSAALGLAV-AG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~-a~ 276 (333)
.+.|+|+.|.||||++-+++ ..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57788888888888888777 44
No 114
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.12 E-value=0.74 Score=39.76 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
++++|+|+-|.||||++-+++....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999887653
No 115
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.92 E-value=1.8 Score=36.49 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=23.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.++|+|.-|.||||++-.++..+-..|
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 578999999999999999888776545
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.71 E-value=2.3 Score=34.50 Aligned_cols=26 Identities=23% Similarity=0.173 Sum_probs=21.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~ 279 (333)
.+++|+|+.|-|||+++=.++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999877777654
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.70 E-value=2.7 Score=41.73 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
+..++++|.-|-||||+++-++..+...|+.-++|++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35788999999999999999998888878744455543
No 118
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=81.05 E-value=0.78 Score=38.80 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+-|.||||++-+++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68899999999999999887764
No 119
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.93 E-value=2.3 Score=39.03 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=28.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTF 298 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tl 298 (333)
.+++|+|++|-|||+++-..+..+ +..-+.+.++.......+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKSGDL 97 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccchhHH
Confidence 589999999999999987765443 333466666554444433
No 120
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.63 E-value=1.3 Score=41.48 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
..+.|.|+-|.||||++..++..+...+. +|.+-+-
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~ 138 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAG 138 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEee
Confidence 46788999999999999999888876543 5666543
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.61 E-value=4.1 Score=39.15 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=30.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
+...|.|+-|.|||+|+=.+++.+...|..-++|++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 47899999999999999888888777665456787765
No 122
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=80.50 E-value=2 Score=36.45 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=28.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|.-|.||||+.-+++..+-..++.-.++-.|.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~ 48 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPN 48 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5899999999999999999888766665444444453
No 123
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.40 E-value=0.91 Score=37.60 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||++-+++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 58899999999999998876654
No 124
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=80.40 E-value=2.7 Score=40.40 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=28.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.|.|+-|.||||+++.++..+...+. +|.+-+-
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~ 193 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAG 193 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecc
Confidence 6889999999999999999988876543 5665543
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.18 E-value=2.2 Score=36.45 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=32.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHH------cCCceEEEeCCC---hhhHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVA------FGYSNIFVTSPS---PENLNTFFQ 300 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~------~g~~~I~VTAPs---~~~v~tlf~ 300 (333)
..+.|.|+.|.||||++=+++..+.. .+...|++.... +..+..+++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999988876543 123367777755 344444444
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=80.15 E-value=0.92 Score=38.90 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
+.|+|+.|.|||||+-+.+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999998887776
No 127
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=80.02 E-value=4.4 Score=40.59 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=29.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
.+++.|+-|-|||.+.-+.+-. ...+|+|.+|..+-.+.+.+-+.
T Consensus 24 ~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 24 LVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHT
T ss_pred cEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHH
Confidence 3666777777774433332222 23489999999999988775443
No 128
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=79.90 E-value=1.1 Score=38.96 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=22.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.+.|+|+.|.||||++.+++..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 367999999999999999988876334
No 129
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.69 E-value=1.3 Score=40.20 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=27.0
Q ss_pred ceeeeeccCCCchh-HHHHHHHHHHHcCCceEEEeCCChhh
Q psy18105 255 TVSLTAARGRGKSA-ALGLAVAGAVAFGYSNIFVTSPSPEN 294 (333)
Q Consensus 255 ~~vltA~RGRGKSa-llGla~a~~~~~g~~~I~VTAPs~~~ 294 (333)
..++||+.|.|||| |++.+ -.+...|. +++|-.|...+
T Consensus 30 I~vitG~M~sGKTT~Llr~~-~r~~~~g~-kvli~kp~~D~ 68 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRL-RRGIYAKQ-KVVVFKPAIDD 68 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHHTTC-CEEEEEEC---
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHcCC-ceEEEEeccCC
Confidence 57999999999999 77885 44444454 68888786654
No 130
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.57 E-value=0.97 Score=38.92 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.||||++-+++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887764
No 131
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=79.54 E-value=4.5 Score=40.45 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=28.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+++.|+-|-|||.+ .|+.+. .. ..+|+|.+|+.+-.+.+++-+.
T Consensus 29 ~~~~a~TGtGKT~~-~l~~~~-~~--~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 29 LLLNAKPGLGKTVF-VEVLGM-QL--KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp EEEECCTTSCHHHH-HHHHHH-HH--TCEEEEEESCHHHHHHHHHHHG
T ss_pred EEEEcCCCCcHHHH-HHHHHH-hC--CCcEEEEcCCHHHHHHHHHHHH
Confidence 56677777777743 333332 22 2489999999998888775443
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=79.45 E-value=0.96 Score=37.83 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.4
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.++|+|+.|.||||++-+++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999998877664
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=79.39 E-value=1.7 Score=35.88 Aligned_cols=33 Identities=21% Similarity=0.075 Sum_probs=26.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.++|+|.-|.||||++-.++..+-..|+. +.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~-~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGIN-NKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCce-EEEE
Confidence 47899999999999999998888766653 4444
No 134
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.37 E-value=0.99 Score=38.11 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+++|+|+-|.||||++-+++...-
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999887653
No 135
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=79.28 E-value=2.6 Score=48.48 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc----------CCceEEEeCCChhhHHHHHHHHHhcchhcccc
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF----------GYSNIFVTSPSPENLNTFFQFIFKGFDALAYQ 312 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~----------g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg~~ 312 (333)
+++.||-|.|||.++-|++...+.. ...+++.+||.++=++..++...+.++.+|++
T Consensus 98 ~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~ 164 (1724)
T 4f92_B 98 LLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGIT 164 (1724)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCC
T ss_pred EEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCE
Confidence 7889999999999999998887753 12379999999999999999888888877764
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.15 E-value=2.1 Score=36.92 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=28.6
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
...+|+|+.|.|||+++=..+..+...|..-++++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 36899999999999997666666665665567777654
No 137
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.13 E-value=3.2 Score=38.88 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
..+.|+|+-|.||||++..++..+...|..=.++.+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 3678999999999999999999888766533444443
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.09 E-value=1.1 Score=38.23 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||++-.++..+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998877765
No 139
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=79.06 E-value=2.2 Score=44.62 Aligned_cols=49 Identities=29% Similarity=0.351 Sum_probs=38.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcc
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGF 306 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L 306 (333)
+-+++.|+-|.|||++.-+.+.. .| .+++|++|.++-+..+++.+.+.+
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ll~---~g-~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAAYAA---QG-YKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHH---TT-CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCchhHHHHHHHHHHH---CC-CeEEEEcchHHHHHHHHHHHHHHh
Confidence 46899999999999887765443 34 389999999999999987665544
No 140
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.64 E-value=2 Score=36.03 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGY 282 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~ 282 (333)
.++|+|.-|.||||++-.++..+-..|+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~ 42 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGY 42 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 5889999999999999998888876665
No 141
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.56 E-value=1 Score=39.98 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+++|+|+-|.|||||+-+++....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999887654
No 142
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.41 E-value=0.69 Score=40.13 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
..++|+|+-|.||||++-+++..+-
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4689999999999999998887763
No 143
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=78.40 E-value=1.6 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=25.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEE
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIF 286 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~ 286 (333)
.++|+|+-|.||||++.+++..+...+..+|+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 58899999999999999998877654233553
No 144
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.27 E-value=2.6 Score=36.32 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=29.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHH------cCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVA------FGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~------~g~~~I~VTAPs 291 (333)
....|+|+-|.|||+++-.++..... .+...++|+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 36899999999999999888776432 134468888766
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.16 E-value=1.6 Score=39.16 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=27.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPE 293 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~ 293 (333)
..++||+-|.||||+|=-.+..+...|. ++++-.|..+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~~d 51 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPKID 51 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEeccC
Confidence 5899999999999976555666665565 5666656554
No 146
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.11 E-value=1.6 Score=44.23 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.2
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
..+.|.|.-|.||||++++++..+...+ .+|++-+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~-G~V~l~g 328 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQG-KSVMLAA 328 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcC-CeEEEec
Confidence 4788999999999999999888776654 3677753
No 147
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.00 E-value=1.2 Score=37.99 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=20.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+.|+|+-|.||||++-+++..+-
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999998877653
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.86 E-value=2.3 Score=42.27 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.6
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHH
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLN 296 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~ 296 (333)
.++++|+|++|-|||+++=.++..+ |..-+.+.+++..+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~ 117 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKT 117 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHH
Confidence 3689999999999999998766655 5556778887765544
No 149
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.80 E-value=1.2 Score=38.11 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+.|.||||++-+++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68899999999999999887765
No 150
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=77.77 E-value=2 Score=44.75 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=37.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
+-+++.|+-|.|||.+.-+++...+..+..+++|.+|..+-++.+++-+
T Consensus 242 ~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 242 QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp CEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHH
Confidence 5689999999999998766555443334458999999999888877644
No 151
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=77.73 E-value=3.1 Score=35.24 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=27.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
...+|+|+-|.|||+++=.++. ..|..-++++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 3689999999999999888777 3455567887664
No 152
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=77.71 E-value=2.1 Score=37.90 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.+++.|.-|.||||.+-+++..+...|+..+++|-
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r 39 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR 39 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee
Confidence 57889999999999999999999888875555543
No 153
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.47 E-value=1.9 Score=39.33 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEE
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFV 287 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~V 287 (333)
.+.|+|+-|.||||++-+++..+......+|++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 688999999999999999887765431235544
No 154
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.03 E-value=7.5 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
..+..++-|-|||++.--++..+...|+.-++|-+
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45556889999999998888888887874455544
No 155
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.97 E-value=0.96 Score=38.50 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGY 282 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~ 282 (333)
.++|.|.-|.||||++-+++..+-..|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999888865554
No 156
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.97 E-value=11 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=9.0
Q ss_pred eeeeeccCCCchhHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLA 273 (333)
Q Consensus 256 ~vltA~RGRGKSallGla 273 (333)
++|+|+.|-|||+++=..
T Consensus 48 vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 445555555555554433
No 157
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.87 E-value=1.1 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.6
Q ss_pred ccceeeeeccCCCchhHHH
Q psy18105 253 RSTVSLTAARGRGKSAALG 271 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallG 271 (333)
..|++|+|+.|-|||+++-
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4689999999999998764
No 158
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=76.78 E-value=2.4 Score=36.31 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=26.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.+.|+|+-|.||||++-+++..+...|. .|++.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEEe
Confidence 5889999999999999998887765554 45443
No 159
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.65 E-value=1.2 Score=36.79 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-.++..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999988777654
No 160
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.50 E-value=1.5 Score=37.06 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=13.6
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.++|||..|.||||+.-+++..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3566666666666666555554
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.38 E-value=2 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 187 GKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 187 ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
.+++..+.+.+..++..+.++|+|.+|.|||+.+
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3344455555545444568999999999999877
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.26 E-value=1.7 Score=40.07 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..++|+|+-|.||||+...++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887765
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.24 E-value=4.9 Score=35.03 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=32.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh---------hhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP---------ENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~---------~~v~tlf~fa~ 303 (333)
++++|+|+.|-|||+++=..+..+ +..-+.|..++. ..+..+|+.+.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR 95 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhccChhHHHHHHHHHHHH
Confidence 478999999999999987666544 334466666553 34556666554
No 164
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=75.89 E-value=6.6 Score=34.37 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=48.1
Q ss_pred ccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcC
Q psy18105 43 GNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSC 122 (333)
Q Consensus 43 GqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~ 122 (333)
...||++++|+...-.++.+..+...++.||++++---- |.... ..+...+..-.-++.|...+...
T Consensus 127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~---~~g~v----------~~~~~~~~~~~~~~~~~~~l~~~ 193 (221)
T 3dr5_A 127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADAL---LDGTI----------ADQTRKDRDTQAARDADEYIRSI 193 (221)
T ss_dssp TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT---GGGTC----------SCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC---CCCcC----------CCCCCCChHHHHHHHHHHHHhhC
Confidence 578999999998888888999999999999999982111 22211 01111222233567888888887
Q ss_pred CceE
Q psy18105 123 NRCL 126 (333)
Q Consensus 123 ~~~~ 126 (333)
+++.
T Consensus 194 ~~~~ 197 (221)
T 3dr5_A 194 EGAH 197 (221)
T ss_dssp TTEE
T ss_pred CCee
Confidence 7653
No 165
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=75.82 E-value=1.6 Score=36.40 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-.++..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999988877655
No 166
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.78 E-value=1.6 Score=36.78 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=26.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|.-|.||||+.-+++..+ .|+.-+.+.-|.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~ 40 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQ 40 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCC
Confidence 58999999999999999888766 234334455554
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.61 E-value=1.3 Score=37.28 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+-|.||||++-+++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999887765
No 168
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=75.53 E-value=1.3 Score=38.82 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
++.|.|+-|.|||||+-+++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999988766
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.33 E-value=1.5 Score=38.77 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+.|.||||++-+++..+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887554
No 170
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.11 E-value=2.6 Score=39.64 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=27.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
..+.|+++-|.||||++..++..+...|. +|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 36888999999999999999988887665 455543
No 171
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.06 E-value=1.8 Score=39.02 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=29.0
Q ss_pred hhhhhhhhhhccchhccccceeeeeccCCCchhHHHHHHHHHH
Q psy18105 236 FGKALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~vltA~RGRGKSallGla~a~~~ 278 (333)
|++++..++.+++. +..+++.|+-|.|||+++ ++++..+
T Consensus 44 f~~~l~~~~~~iPk---kn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPK---KNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTT---CSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhcCCc---ccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45677777776544 345999999999999998 5556555
No 172
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=75.02 E-value=3.1 Score=35.73 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=21.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~ 279 (333)
.+.|+|+-|.|||||+-+++..+-.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999988877764
No 173
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=74.96 E-value=1.7 Score=36.22 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999988776654
No 174
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=74.89 E-value=2.5 Score=40.10 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=28.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPE 293 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~ 293 (333)
.+.|+|.-|.|||||+-.++..+...+. +|.|.+..+.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~-~v~V~~~dp~ 113 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGH-KLSVLAVDPS 113 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEECCC-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCC-eEEEEeecCC
Confidence 4789999999999999988887765432 5666665444
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.88 E-value=1.6 Score=36.25 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-+++..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999988887654
No 176
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.49 E-value=3.7 Score=37.40 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=32.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh---------hhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP---------ENLNTFFQFIF 303 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~---------~~v~tlf~fa~ 303 (333)
++|.|+.|.|||+++=..+..+ +...|.|..+.. .++..+|+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNMYVGESERAVRQVFQRAK 100 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8899999999999998766543 334677777653 34667777653
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.34 E-value=1.9 Score=39.78 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.2
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHH
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~ 278 (333)
...++|+|++|-|||+++-.++..+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999977766654
No 178
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.23 E-value=1.6 Score=37.07 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.+.|+|..|.||||++-+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 378999999999999988776
No 179
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=74.18 E-value=1.9 Score=38.17 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=18.2
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|+|+.|.|||||+-+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999876543
No 180
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.96 E-value=1.8 Score=36.96 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||++-.++..+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999988777654
No 181
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=73.85 E-value=6.3 Score=36.57 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.++|+-|-||||++..++..+...|..-.++.+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 567789999999999999998888777643444443
No 182
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=73.82 E-value=1.6 Score=36.63 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.++|+|+.|.||||++-+++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998865
No 183
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.73 E-value=1.8 Score=38.72 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..++|+|..|.||||++-.++..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999988877665
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=73.54 E-value=1.7 Score=36.65 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.+.|.|+-|.|||||+=+++..+...|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~~~G 61 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIGHQG 61 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCC
Confidence 578999999999999998888773334
No 185
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.38 E-value=1.9 Score=35.79 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=20.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..++|+|..|.||||++-.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 358899999999999988776654
No 186
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.29 E-value=1.8 Score=36.98 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|+|.-|.||||++-+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999887654
No 187
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=72.99 E-value=2.9 Score=39.46 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCCh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSP 292 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~ 292 (333)
.+.|+|+.|.|||||+-.++..+...+ .+|.|.+..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~~~-g~v~i~~~d~ 93 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVLAVDP 93 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECG
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhCC-CEEEEEEEcC
Confidence 588999999999999998887776543 2566665544
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=72.91 E-value=2.7 Score=40.22 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAF 280 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~ 280 (333)
.++|+|+-|.||||+|-.++..+...
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 58999999999999999888877654
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.76 E-value=4.4 Score=37.43 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.+.++++-|.||||++..++..+...|. +|++-.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~-~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEec
Confidence 5667799999999999998888877665 454433
No 190
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=72.58 E-value=4.7 Score=34.42 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=47.6
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|....-.+..+..+...++.||++++--.- |.... ..+.........++.|...+..++
T Consensus 139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~---~~g~~----------~~~~~~~~~~~~~~~~~~~l~~~~ 205 (225)
T 3tr6_A 139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL---RRGQV----------ADEENQSENNQLIRLFNQKVYKDE 205 (225)
T ss_dssp TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS---GGGGG----------GCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC---cCCcc----------cCccccChHHHHHHHHHHHHhcCC
Confidence 68999999998666788899999999999999974333 22211 111122233456778888887776
Q ss_pred ceE
Q psy18105 124 RCL 126 (333)
Q Consensus 124 ~~~ 126 (333)
.+.
T Consensus 206 ~~~ 208 (225)
T 3tr6_A 206 RVD 208 (225)
T ss_dssp TEE
T ss_pred CeE
Confidence 653
No 191
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=72.44 E-value=2 Score=35.93 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~ 278 (333)
++|+|.-|.||||++-+++..+-
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 68999999999999988877653
No 192
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.44 E-value=2.1 Score=35.48 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988776653
No 193
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=72.39 E-value=2.1 Score=35.67 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-+++..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988877654
No 194
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.34 E-value=2.1 Score=35.05 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988877764
No 195
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=72.32 E-value=3.8 Score=41.88 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=43.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc-C--CceEEEeCCChhhHHHHHHHHHhc
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF-G--YSNIFVTSPSPENLNTFFQFIFKG 305 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~-g--~~~I~VTAPs~~~v~tlf~fa~~~ 305 (333)
.|++|.|.-|.|||++|=--+++++.. | ..+|++.+.+..++..+-+-+.+.
T Consensus 16 ~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 16 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 489999999999999999888888865 3 358999999999888877655543
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.23 E-value=1.9 Score=38.01 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
++++|.|+-|.|||||+-.++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999998887653
No 197
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.15 E-value=1.3 Score=37.08 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.6
Q ss_pred ceeeeeccCCCchhHHHH
Q psy18105 255 TVSLTAARGRGKSAALGL 272 (333)
Q Consensus 255 ~~vltA~RGRGKSallGl 272 (333)
.+.|.|+-|.||||++-+
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999999995
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.11 E-value=1.8 Score=37.07 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=21.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
.+++|+|+-|.||||++-.++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999998887766
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=72.03 E-value=5.6 Score=36.94 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=34.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC---------hhhHHHHHHHHHh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS---------PENLNTFFQFIFK 304 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs---------~~~v~tlf~fa~~ 304 (333)
+.++|+|+.|.|||+++=..+..+. +..-+.|.++. ...+..+|+.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 4689999999999999987776652 33335566653 4567778876643
No 200
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.02 E-value=2.1 Score=38.35 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999866543
No 201
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.01 E-value=2.4 Score=37.93 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999876554
No 202
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=71.96 E-value=4.6 Score=35.71 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.++|+|.-|.||||++-+++..+-. |+ .++.|
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~-~~-~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK-DY-DVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT-TS-CEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc-CC-Cceee
Confidence 5899999999999999999888876 54 56555
No 203
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.95 E-value=2.3 Score=37.82 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999876554
No 204
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=71.93 E-value=2 Score=35.75 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.4
Q ss_pred cceeeeeccCCCchhHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a 275 (333)
...+|+|+.|.|||+++-....
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999876544
No 205
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=71.91 E-value=5.3 Score=35.35 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=46.3
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|+...-.+..|..+...++.||+|++--.- |..... .+........-.+.|.+.+..++
T Consensus 135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~---~~g~v~----------~~~~~~~~~~~~~~~~~~l~~~~ 201 (248)
T 3tfw_A 135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV---RDGEVV----------NPQSADERVQGVRQFIEMMGAEP 201 (248)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS---GGGGGG----------CTTCCCHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC---cCCccc----------CccccchHHHHHHHHHHHHhhCC
Confidence 38999999998777788999999999999988874332 221110 01112223345677777777777
Q ss_pred ceE
Q psy18105 124 RCL 126 (333)
Q Consensus 124 ~~~ 126 (333)
.+.
T Consensus 202 ~~~ 204 (248)
T 3tfw_A 202 RLT 204 (248)
T ss_dssp TEE
T ss_pred CEE
Confidence 653
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=71.82 E-value=2.8 Score=39.76 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=32.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPEN 294 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~ 294 (333)
-.+|+|+-|.|||+++...+.++...|. +|+|-=|..+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~-~~~~~D~~~~~ 75 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGS-RVIIIDPEREY 75 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEESSCCS
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCC-EEEEEeCCcCH
Confidence 4689999999999999999998887664 68888787654
No 207
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.80 E-value=2.2 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-.++..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988777654
No 208
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.73 E-value=3.3 Score=41.29 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.6
Q ss_pred cceeeeeccCCCchhHHHHH-HHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLA-VAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla-~a~~~~~g~~~I~VTAPs 291 (333)
..+.|+|+-|.|||||+=++ ++.+...+...|+|+.-.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 58999999999999999986 467776455689998644
No 209
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=71.52 E-value=2.1 Score=37.89 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+-|+|+-|.||||++-+++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999877755
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=71.52 E-value=2.7 Score=39.73 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.++|+|+-|.||||++.-++..+...|+ +|.|.+-.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~-kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGH-RVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-ceEEEecC
Confidence 5789999999999999988888776665 55554444
No 211
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=71.42 E-value=2.2 Score=35.31 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999987776654
No 212
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.37 E-value=2.4 Score=39.05 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred eeeeeccCCCchhHHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~ 278 (333)
++|+|++|-||||++=..+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999988777664
No 213
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.83 E-value=2.5 Score=37.43 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999866543
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=70.79 E-value=1.9 Score=36.93 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=18.9
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|+|.-|.||||++-+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998876653
No 215
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.74 E-value=4.1 Score=36.66 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.2
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.+++|+|+.|-|||+++=..+..+...+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999987777776544
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=70.67 E-value=2.6 Score=37.66 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=19.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+=+.+..+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999998766543
No 217
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=70.67 E-value=5.3 Score=37.31 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=30.2
Q ss_pred hccccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 250 KTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 250 ~~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
+..++.++.+++-|-||||+.--++..+.+.|+.-++|.
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344678899999999999998888888877787444443
No 218
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=70.56 E-value=5.4 Score=35.40 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=47.6
Q ss_pred ccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcC
Q psy18105 43 GNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSC 122 (333)
Q Consensus 43 GqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~ 122 (333)
...||++++|....-.++.|..+...++.||+|++---- |.... ..+...+....-++.|.+.|.++
T Consensus 134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~---~~g~v----------~~~~~~~~~~~~~~~~~~~l~~~ 200 (242)
T 3r3h_A 134 EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF---WDGKV----------IDPNDTSGQTREIKKLNQVIKND 200 (242)
T ss_dssp SSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS---SSSCS----------SCTTCCCHHHHHHHHHHHHHHTC
T ss_pred CCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc---cCCcc----------cCccccChHHHHHHHHHHHHhhC
Confidence 368999999998777778899999999999999983221 11110 00111222234677888888887
Q ss_pred CceE
Q psy18105 123 NRCL 126 (333)
Q Consensus 123 ~~~~ 126 (333)
+.+-
T Consensus 201 ~~~~ 204 (242)
T 3r3h_A 201 SRVF 204 (242)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 7654
No 219
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=70.43 E-value=2.5 Score=35.34 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999988777665
No 220
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=70.42 E-value=3.2 Score=33.54 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 189 ALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 189 al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
.+..+.+.+.. ...+.++|+|.+|.|||+.+
T Consensus 30 ~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 30 EIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHHTS-SSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHhc-CCCCceEEECCCCCCHHHHH
Confidence 34444444433 34578999999999999877
No 221
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=70.40 E-value=2 Score=36.94 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+-|.|||||+-+++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999887765
No 222
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.33 E-value=2.6 Score=37.73 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999998766543
No 223
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=70.24 E-value=9.7 Score=32.43 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=46.3
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|......++.|..+...++.||++++--+- |..... .+........-.+.|.+.+..++
T Consensus 132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~---~~g~~~----------~~~~~~~~~~~~~~~~~~l~~~~ 198 (223)
T 3duw_A 132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV---REGEVI----------DNTSNDPRVQGIRRFYELIAAEP 198 (223)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS---GGGGGG----------CTTCCCHHHHHHHHHHHHHHHCT
T ss_pred CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC---cCCccc----------CccccchHHHHHHHHHHHHhhCC
Confidence 56999999998777789999999999999988875443 221110 01111222344667777777776
Q ss_pred ceE
Q psy18105 124 RCL 126 (333)
Q Consensus 124 ~~~ 126 (333)
.+.
T Consensus 199 ~~~ 201 (223)
T 3duw_A 199 RVS 201 (223)
T ss_dssp TEE
T ss_pred CeE
Confidence 653
No 224
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.17 E-value=2 Score=36.53 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.4
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.+.|||..|.||||++-+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999888755
No 225
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.07 E-value=4.1 Score=33.56 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.++|+|.-|.||||++-.++..+-..|
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 589999999999999998888776545
No 226
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.04 E-value=2.7 Score=38.25 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999766543
No 227
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.03 E-value=2.4 Score=34.49 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|+|.-|.||||++-+++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999988877754
No 228
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=69.95 E-value=2.5 Score=35.16 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999988777654
No 229
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=69.91 E-value=7.9 Score=42.40 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCChhhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPSPENLNTFFQ 300 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs~~~v~tlf~ 300 (333)
.++.++-|.|||.+. +.++.++.. +..+|+|-+|+.+=+.++.+
T Consensus 303 gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred EEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 577888899998886 666666643 23589999998887766654
No 230
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=69.80 E-value=3.2 Score=40.80 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.++++|.-|.||||++.-++..+...|+.-++|++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 57889999999999999998888877764444443
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=69.48 E-value=3.8 Score=35.74 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=25.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPEN 294 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~ 294 (333)
..+++|+-|.||||+|=-.+.++...|+ +++|--|...+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~-kV~v~k~~~d~ 48 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQ-KIQVFKPEIDN 48 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEEC---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEeccCc
Confidence 6899999999999665444555555565 66666677653
No 232
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=69.41 E-value=4.4 Score=36.09 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=25.8
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
..+++|+|+.|.|||+++=..+..+ +..-+.+.+|+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~ 99 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPD 99 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGG
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHH
Confidence 3689999999999999987655542 34345565653
No 233
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=69.25 E-value=7 Score=34.40 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.+++.|.-|.||||++-+++..+-..|+.-+..--|.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 5889999999999999999998887777433333454
No 234
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=69.14 E-value=3.4 Score=37.20 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|+|+.|.|||||+-+.+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999887664
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.98 E-value=2.3 Score=34.12 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.8
Q ss_pred ceeeeeccCCCchhHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLA 273 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla 273 (333)
.++|+|..|.||||++-.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999988766
No 236
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.77 E-value=3 Score=38.09 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=18.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57788999999999988765443
No 237
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=68.65 E-value=3.6 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc--CCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF--GYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~--g~~~I~VTAPs 291 (333)
.|++|+|+.|-|||+|+=..+..+... +..-++|+++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 479999999999999998877777654 44346666554
No 238
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=68.52 E-value=5 Score=41.82 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=35.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
+-+++.|+-|.|||+ .++..+...+ +.++++|.++-+..+++.+.+
T Consensus 156 k~vlv~apTGSGKT~---~al~~l~~~~--~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTY---HAIQKYFSAK--SGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp EEEEEECCTTSSHHH---HHHHHHHHSS--SEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHH---HHHHHHHhcC--CeEEEeCHHHHHHHHHHHHHh
Confidence 578999999999998 5555555543 347779999999999887544
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=68.49 E-value=4.4 Score=34.74 Aligned_cols=33 Identities=21% Similarity=0.017 Sum_probs=25.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH-HcCCceEEE
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV-AFGYSNIFV 287 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~-~~g~~~I~V 287 (333)
.++|+|.-|.||||++-+++..+- ..|+.-+++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 578999999999999998888776 556533444
No 240
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=68.46 E-value=2.9 Score=37.70 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+++..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999865543
No 241
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=68.07 E-value=3.6 Score=33.16 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=34.5
Q ss_pred cccceEEEec-CCCCCHHHHHHHh--hhhccCcEEEEEeCCccchh
Q psy18105 44 NTYGMCVLQD-FEALTPNLLARTI--ETVEGGGVIVLLLRTLSSLK 86 (333)
Q Consensus 44 qE~d~lIlD~-~~gl~PNaLaala--GTVrGGGlLILL~P~~~~w~ 86 (333)
..||+++.|. +....++.+..+. ..++.||++++-+++...++
T Consensus 109 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~~ 154 (171)
T 1ws6_A 109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLP 154 (171)
T ss_dssp CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCCT
T ss_pred CceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCCc
Confidence 3799999985 2266778888888 88999999999999866543
No 242
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=67.94 E-value=8.3 Score=34.70 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=30.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe-CCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT-SPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT-APs 291 (333)
.+++.|.-|.||||++-.++..+-..|+..+.+| .|.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 5899999999999999999999988887634444 454
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=67.91 E-value=2.3 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.2
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..+.|+|+.|.|||||+-+.+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999866543
No 244
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.75 E-value=3.2 Score=38.35 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=26.9
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
..|++|+|+.|-|||+++-.........+..=|.|..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 46999999999999999877666554433333555443
No 245
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=67.66 E-value=3.2 Score=37.97 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+-|.|||||+-+.+..+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999866554
No 246
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=67.64 E-value=6.8 Score=34.80 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=23.5
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+++|+|+.|.|||+++=..+..+ +..-+.|..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 469999999999999987665443 3333444443
No 247
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=67.54 E-value=3.2 Score=37.55 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999876554
No 248
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.32 E-value=2.7 Score=37.03 Aligned_cols=29 Identities=17% Similarity=-0.008 Sum_probs=22.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCc
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYS 283 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~ 283 (333)
.+.|+|+-|.|||||+=+++..-...|..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcCCee
Confidence 57889999999999999887762234644
No 249
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=67.20 E-value=7.4 Score=40.37 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=42.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc-C--CceEEEeCCChhhHHHHHHHHHh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF-G--YSNIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~-g--~~~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.|++|.|.-|.|||+.|=--+++++.. | ..+|++.+.+..++..+-+-+.+
T Consensus 25 g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 489999999999999999999999974 3 34899999999888887655443
No 250
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=67.10 E-value=9.2 Score=35.47 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=33.4
Q ss_pred ccccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHH
Q psy18105 251 TLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFF 299 (333)
Q Consensus 251 ~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf 299 (333)
+.++.++.+++-|-||||+.--++..+.+.|+.-++|.+=-..++..+|
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l 60 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSL 60 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHh
Confidence 3467899999999999999877777777777744444441133444444
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.79 E-value=3.5 Score=37.44 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+=+.+..+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57788999999999888765543
No 252
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=66.74 E-value=3.2 Score=34.05 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=19.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-+++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887776654
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=66.68 E-value=3.3 Score=37.80 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.|||||+-+++..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999998776544
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.68 E-value=5.6 Score=35.90 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=26.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTA 289 (333)
.++|+|+.|.||||++=.++..+... |..-++++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68999999999999998887777654 532234543
No 255
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=66.61 E-value=3.6 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.4
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|+|+.|.|||||+-+.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999876544
No 256
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=66.54 E-value=3.4 Score=37.39 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999998765544
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=66.43 E-value=3.4 Score=38.84 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=28.9
Q ss_pred hhhccchhccc-cceeeeeccCCCchhHHHHHHHHHHHcCCceEEE
Q psy18105 243 FIDGISEKTLR-STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFV 287 (333)
Q Consensus 243 ~~~~~~~~~~~-~~~vltA~RGRGKSallGla~a~~~~~g~~~I~V 287 (333)
+++.++-..-+ ..+.|+|+-|.|||||+-+++..+ .| +|++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G--~I~~ 156 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GG--SVLS 156 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TC--EEEC
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--Cc--eEEE
Confidence 34444443333 578999999999999999888776 44 4544
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.39 E-value=3 Score=34.09 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.3
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.++|+|.-|.||||+.-.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999877766
No 259
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.23 E-value=3.5 Score=37.09 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=25.6
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.+++|+|+.|.|||+++=..+..+...+..-+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 37899999999999999888777754333234443
No 260
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=66.16 E-value=5.3 Score=34.95 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=27.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
...+++++-|-||||++--++..+. .|+ ++.|..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~-~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNY-KVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTS-CEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCC-eEEEEe
Confidence 4578899999999999998888877 776 555544
No 261
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=66.06 E-value=3.3 Score=35.08 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-.++..+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999988777654
No 262
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.01 E-value=3.8 Score=37.21 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=18.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57788999999999888766543
No 263
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.01 E-value=3.1 Score=38.80 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+.|-|||||+-+.+..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 58899999999999999888766
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=65.79 E-value=4.5 Score=36.81 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.0
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|+|+.|.|||||+=+++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5778899999999998876664
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=65.72 E-value=3.5 Score=38.00 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+++..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68899999999999998776544
No 266
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=65.66 E-value=13 Score=37.71 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=29.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+++.|+-|-|||...-+.+ +.. ...++|.+|..+=++...+.+.
T Consensus 62 ~lv~~pTGsGKTl~~~lpa--l~~--~g~~lVisP~~~L~~q~~~~l~ 105 (591)
T 2v1x_A 62 VFLVMPTGGGKSLCYQLPA--LCS--DGFTLVICPLISLMEDQLMVLK 105 (591)
T ss_dssp EEEECCTTSCTTHHHHHHH--HTS--SSEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHH--HHc--CCcEEEEeCHHHHHHHHHHHHH
Confidence 6678888888886443332 222 2379999999988776665543
No 267
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.43 E-value=23 Score=28.97 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 189 ALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 189 al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
++..+.+.+..+ ...+++|+|..|.|||+.+
T Consensus 25 ~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 25 VIQRLKGYVERK-NIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp HHHHHHHHHHTT-CCCCEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhCC-CCCeEEEECCCCCCHHHHH
Confidence 334444444333 3345999999999999877
No 268
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.31 E-value=4.4 Score=37.27 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 186 QGKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 186 Q~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
|.+++..+.+.+..++..++++++|.+|.|||+.+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 44555566666655555668999999999999877
No 269
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=65.31 E-value=13 Score=31.56 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=46.2
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|....-.++.+..+...++.||++++--.- |..... .+........-++.|.+.+..++
T Consensus 144 ~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~---~~g~~~----------~~~~~~~~~~~~~~~~~~l~~~~ 210 (229)
T 2avd_A 144 GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL---WRGKVL----------QPPKGDVAAECVRNLNERIRRDV 210 (229)
T ss_dssp TCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS---GGGGGG----------SCCTTCHHHHHHHHHHHHHHHCT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCC---cCCccc----------CcccCChHHHHHHHHHHHHhhCC
Confidence 68999999987666678899999999999999884332 222110 01112223445677777777776
Q ss_pred ce
Q psy18105 124 RC 125 (333)
Q Consensus 124 ~~ 125 (333)
.+
T Consensus 211 ~~ 212 (229)
T 2avd_A 211 RV 212 (229)
T ss_dssp TE
T ss_pred CE
Confidence 65
No 270
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.04 E-value=3.7 Score=37.77 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=18.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+++..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999998766544
No 271
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=64.84 E-value=4.2 Score=37.77 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
..+|||.-|.|||||+-.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999887654
No 272
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=64.77 E-value=4.8 Score=38.90 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=34.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFF 299 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf 299 (333)
+.++++++=|-||||+.--++..+...|+.-++|.+ ...++..+|
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~ 47 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLL 47 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhh
Confidence 357889999999999998888888888887778887 444555444
No 273
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=64.67 E-value=3.1 Score=35.40 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|.-|.||||++-+++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999877654
No 274
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.42 E-value=5.5 Score=35.93 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=16.4
Q ss_pred ceeeEEecCCCChhhhhh
Q psy18105 204 STVSLTAARGRGKSAALG 221 (333)
Q Consensus 204 ~~lvlTAdRGRGKSAaLG 221 (333)
+.++|+|.||.|||+.+-
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 789999999999999873
No 275
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=64.30 E-value=8.2 Score=33.09 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=25.1
Q ss_pred cceeeeeccCCCchhHHHHHHHH-HHHcCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAG-AVAFGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~-~~~~g~~~I~VTA 289 (333)
...+|.|+-|-|||+++--.++. +...|..-+++|.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 36899999999999998766555 4444543345554
No 276
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=63.92 E-value=4.4 Score=37.58 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+-|.|||||+-+.+..+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999866554
No 277
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.74 E-value=4 Score=39.96 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~ 279 (333)
.++|+|+-|.||||+|-.++..+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5899999999999999988877653
No 278
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.71 E-value=2.6 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.7
Q ss_pred cceeeeeccCCCchhHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLA 273 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla 273 (333)
...+|+|+.|.|||+++=-.
T Consensus 24 g~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36899999999999997633
No 279
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=63.54 E-value=8.5 Score=32.89 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.4
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.++|+|.-|.||||++-+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887754
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.48 E-value=2.7 Score=38.05 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999876554
No 281
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.42 E-value=3.8 Score=37.84 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+.|+|+-|.||||++-+++..+-
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999998877664
No 282
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=62.97 E-value=2.7 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=16.0
Q ss_pred eeeeeccCCCchhHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLA 273 (333)
Q Consensus 256 ~vltA~RGRGKSallGla 273 (333)
++|.|+.|.|||+++--+
T Consensus 25 i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp EEEEEETTSSHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999998643
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.90 E-value=3.9 Score=36.64 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=18.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|+-|.||||+.-.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999887666543
No 284
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.82 E-value=3.8 Score=34.24 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.1
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|+|.-|.||||+.-+++..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5889999999999998877664
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=62.81 E-value=7.7 Score=33.16 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCc-eEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYS-NIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~-~I~VTAPs 291 (333)
.++|+|.-|.||||++-.++..+...|+. -++.-.|.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 57899999999999999888887766653 23333443
No 286
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.69 E-value=4.1 Score=35.07 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-+++..+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999988887654
No 287
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=62.57 E-value=7.8 Score=33.24 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGY 282 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~ 282 (333)
.+.|+|.-|.||||++--++..+...|+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 4789999999999999988888877775
No 288
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=62.38 E-value=7.6 Score=36.84 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=30.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
+..+|.|+-|.|||+++=.+++.+...|..-++|++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 47899999999999998877777776666567888764
No 289
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=62.34 E-value=6.1 Score=39.75 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=27.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.++|+|.-|.||||++.-++..+...|+.-.+|++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 57788999999999999999888877764444444
No 290
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=62.18 E-value=5.7 Score=37.24 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=26.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.|+|+.|-||||++-.++..+...|. +|.|.+.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v~~~ 92 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIAV 92 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEEee
Confidence 5788999999999999988877765543 4444443
No 291
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=62.18 E-value=4.2 Score=36.90 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..++|+|..|.||||++=+++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999987776644
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=62.10 E-value=5.4 Score=38.39 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||-+.+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68899999999999999876543
No 293
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.99 E-value=2.9 Score=33.22 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=17.7
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.||||++--++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999998766543
No 294
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.98 E-value=3.7 Score=35.57 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||++-.++..+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999988777654
No 295
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=61.97 E-value=2.9 Score=35.09 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.9
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
.++|.|+.|.|||||+=.++
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999986443
No 296
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=61.97 E-value=6.9 Score=33.72 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=32.3
Q ss_pred ccccceEEEecCCCCCH-HHHHHHhhhhccCcEEEEEeCCccc
Q psy18105 43 GNTYGMCVLQDFEALTP-NLLARTIETVEGGGVIVLLLRTLSS 84 (333)
Q Consensus 43 GqE~d~lIlD~~~gl~P-NaLaalaGTVrGGGlLILL~P~~~~ 84 (333)
+..||+++.|.. +| ..+..+...++.||.+++.+|..+.
T Consensus 156 ~~~~D~v~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 195 (248)
T 2yvl_A 156 EGIFHAAFVDVR---EPWHYLEKVHKSLMEGAPVGFLLPTANQ 195 (248)
T ss_dssp TTCBSEEEECSS---CGGGGHHHHHHHBCTTCEEEEEESSHHH
T ss_pred CCcccEEEECCc---CHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 457999998654 55 8899999999999999999997543
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=61.94 E-value=2.9 Score=33.24 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.5
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.||||++--++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999986654
No 298
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=61.76 E-value=4.6 Score=34.81 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-+++..+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999988877765
No 299
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.67 E-value=10 Score=36.27 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=36.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNT 297 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~t 297 (333)
.-.+|.|.-|.|||+++-..+.+++..|. .++|.=|--+....
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~-~viv~Dpkge~~~~ 96 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGD-RMVIVDPNGDMLSK 96 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEEEETTHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCCchhHH
Confidence 45889999999999998889999888775 79999998888654
No 300
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=61.55 E-value=3 Score=33.00 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.1
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|-||||++--++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999876553
No 301
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=61.46 E-value=3.1 Score=34.04 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.2
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|.||||++--++..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999765543
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.46 E-value=3.5 Score=33.97 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=15.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-.++..+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999987765543
No 303
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=61.34 E-value=5.5 Score=38.23 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||-+.+...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999866543
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=61.29 E-value=3.9 Score=33.76 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.0
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.||||++-.++.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999976654
No 305
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=61.19 E-value=5.9 Score=38.05 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||-+.+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68899999999999999866543
No 306
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=61.17 E-value=3 Score=36.20 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=17.2
Q ss_pred cceeeeeccCCCchhHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLA 273 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla 273 (333)
...+|+|+.|.|||+++=..
T Consensus 24 ~~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 46899999999999998643
No 307
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=61.15 E-value=14 Score=33.54 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=28.9
Q ss_pred ccccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHH
Q psy18105 251 TLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQ 300 (333)
Q Consensus 251 ~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~ 300 (333)
....+++++|+.|-|||+++=..+..+ +..-+.+.+.+ ..+..+-+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~-~~~~~i~~ 91 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD-CKIDFVRG 91 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT-CCHHHHHT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc-cCHHHHHH
Confidence 344578889999999999986655444 33345566544 33444433
No 308
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.05 E-value=8.4 Score=34.39 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=29.4
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCC--ceEEEeCCChhhHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGY--SNIFVTSPSPENLNTF 298 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~--~~I~VTAPs~~~v~tl 298 (333)
++|+|+.|-|||+++=..+..+...+. .-+.+.+++...+..+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 89 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV 89 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH
Confidence 899999999999999888777653221 1355666654344443
No 309
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.01 E-value=5.5 Score=36.74 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+++|+|+.|-|||+++=..+..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999998876666654
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=60.84 E-value=4.8 Score=34.53 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.3
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|+|.-|.||||+.-.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999998887755
No 311
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=60.80 E-value=3.2 Score=37.98 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+.|.|||||+-+.+..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999877655
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=60.77 E-value=4.2 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.2
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.||||++--++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999987654
No 313
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=60.74 E-value=14 Score=32.94 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=26.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHc----CCceEEEe-CCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAF----GYSNIFVT-SPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~----g~~~I~VT-APs 291 (333)
.+++.|.-|.||||++-.++..+... |+ ++++| -|.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~-~v~~~rep~ 67 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGR-HVVVTREPG 67 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTC-CEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccce-eeeeecCCC
Confidence 58899999999999999999998876 76 44444 454
No 314
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=60.64 E-value=5.9 Score=38.25 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+-|.||||||-+.+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999866543
No 315
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.63 E-value=7.7 Score=38.08 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=29.2
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc-CCceEEEeCCCh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF-GYSNIFVTSPSP 292 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~-g~~~I~VTAPs~ 292 (333)
+.++++|+-|-||||+.+-+++.+... |+ +|++.+-.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 356777999999999999999888887 76 555544443
No 316
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=60.40 E-value=14 Score=32.15 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=47.3
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|+...-.++.+..+...++.||++++--.. |..... .+...+....-++.|...+..++
T Consensus 147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~---~~g~~~----------~~~~~~~~~~~~~~~~~~l~~~~ 213 (232)
T 3cbg_A 147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL---WHGKVT----------EVDPQEAQTQVLQQFNRDLAQDE 213 (232)
T ss_dssp CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT---GGGGGG----------CSSCCSHHHHHHHHHHHHHTTCT
T ss_pred CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC---cCCccC----------CcccCChHHHHHHHHHHHHhhCC
Confidence 67999999987666678899999999999999984433 322111 01112233456777888887776
Q ss_pred ceE
Q psy18105 124 RCL 126 (333)
Q Consensus 124 ~~~ 126 (333)
.+.
T Consensus 214 ~~~ 216 (232)
T 3cbg_A 214 RVR 216 (232)
T ss_dssp TEE
T ss_pred CeE
Confidence 653
No 317
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.36 E-value=9.5 Score=37.12 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=32.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC---------hhhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS---------PENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs---------~~~v~tlf~fa~ 303 (333)
+.++|+|+.|.|||+++=..+..+. +..-+.|.++. ...+..+|+.+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~ 224 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 224 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------CCCTHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH
Confidence 5799999999999999876666552 33235555554 345677777664
No 318
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=60.33 E-value=9.2 Score=36.08 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=32.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc-------CCceEEEeCCChhhHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF-------GYSNIFVTSPSPENLNTFFQF 301 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~-------g~~~I~VTAPs~~~v~tlf~f 301 (333)
..++|+|+.|-|||+++=..+..+... ++.-|.|-+....+-..+|..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 468899999999999999888888643 223466776655444444433
No 319
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=60.18 E-value=4.9 Score=33.68 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|.-|.||||+.-+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999988776654
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.17 E-value=4.2 Score=34.32 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.8
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.++|+|.-|.||||+.-.++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999998777654
No 321
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=60.00 E-value=7.1 Score=35.95 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=23.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.|||+-|.||||+.-.++..+-..|..-.+|.+-
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 478999999999999998888765445433445433
No 322
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=59.79 E-value=8.7 Score=36.67 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=30.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
+..+|+|+-|.|||+++=-+++.+...|..-++|++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999999999999987777777777666788874
No 323
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=59.78 E-value=10 Score=35.68 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=31.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC---------hhhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS---------PENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs---------~~~v~tlf~fa~ 303 (333)
+.++|+|+.|.|||+++=..+..+ +..-+.|.++. ...+..+|+.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~ 140 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 140 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSCC---CHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHH
Confidence 458999999999999987666655 33335555442 345666776653
No 324
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=59.73 E-value=13 Score=33.81 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=32.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC---------hhhHHHHHHHHHh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS---------PENLNTFFQFIFK 304 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs---------~~~v~tlf~fa~~ 304 (333)
+.++|+|+.|.|||+++=..+..+ +..-+.|..+. ..++..+|+.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVREIFDKARQ 106 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHh
Confidence 368999999999999987666544 33345565432 3456677776643
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=59.70 E-value=3.4 Score=33.37 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.||||++--++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999886653
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=59.63 E-value=4.7 Score=37.71 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~ 279 (333)
.+.|.|+-|.|||||+-+++..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 6789999999999999988777654
No 327
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=59.57 E-value=3.4 Score=34.65 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=18.9
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.++|.|+.|.|||||+=.++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999877654
No 328
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=59.53 E-value=3.4 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=17.1
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.||||++--++.
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 88999999999999965553
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=59.53 E-value=6.2 Score=38.03 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+-|.||||||-+.+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68899999999999999866543
No 330
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=59.33 E-value=3.6 Score=32.77 Aligned_cols=19 Identities=37% Similarity=0.350 Sum_probs=16.8
Q ss_pred eeeeeccCCCchhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~ 274 (333)
++|.|+.|-|||+++--++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999987655
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=59.28 E-value=6.6 Score=37.78 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||=+.+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68899999999999999776654
No 332
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=59.25 E-value=4.4 Score=33.02 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=18.4
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.|||+|+--++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999876654
No 333
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=59.25 E-value=4.7 Score=38.54 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||-+.+...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68899999999999999866543
No 334
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.20 E-value=13 Score=33.23 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCC--ceEEEeCCChhhHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGY--SNIFVTSPSPENLNTF 298 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~--~~I~VTAPs~~~v~tl 298 (333)
+++++|++|-|||+++=..+..+...+. .-+.+.+.+...+..+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 93 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI 93 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH
Confidence 4889999999999999877777643221 1355566555444433
No 335
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=59.13 E-value=13 Score=35.04 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=30.2
Q ss_pred hccccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 250 KTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 250 ~~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
+.-++.++.+++=|-||||+.--++..+...|+.-++|.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 555678999999999999998777777777787444554
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=59.12 E-value=3.4 Score=34.24 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|-|||||+=.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999876654
No 337
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=59.00 E-value=3.5 Score=32.81 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=18.0
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|-|||+++--++..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 889999999999999866544
No 338
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=58.85 E-value=8.2 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=23.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
..|...+-|-|||++.--++..+.+.|+ +|++-
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~-rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGY-RTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEE
Confidence 4555667899999888777777777776 55553
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=58.72 E-value=5.2 Score=35.50 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=20.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-+++..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999998887654
No 340
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=58.64 E-value=4.9 Score=31.53 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=17.9
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
+++.|+.|.||||++--++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999998766543
No 341
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=58.63 E-value=5.4 Score=36.42 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~ 278 (333)
+.|.|+.|.|||||+-+++....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999998887664
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=58.61 E-value=4.7 Score=36.01 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.+.|+|+-|.||||++-+++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988874
No 343
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=58.52 E-value=3.6 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=15.8
Q ss_pred ceeeeeccCCCchhHHHH
Q psy18105 255 TVSLTAARGRGKSAALGL 272 (333)
Q Consensus 255 ~~vltA~RGRGKSallGl 272 (333)
-++|.|+.|-||||++--
T Consensus 20 ~i~v~G~~~~GKssli~~ 37 (183)
T 1moz_A 20 RILILGLDGAGKTTILYR 37 (183)
T ss_dssp EEEEEEETTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 489999999999999853
No 344
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=58.50 E-value=3.6 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=17.4
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||+++--++.
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999986654
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=58.50 E-value=8.2 Score=37.96 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=27.6
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
.+.++|+-|.||||++..++..+...|. +|++-.-.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~-~Vllvd~D 135 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAAD 135 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEeecc
Confidence 5677899999999999999888877665 45544433
No 346
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=58.47 E-value=3.6 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.6
Q ss_pred eeeeeccCCCchhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~ 274 (333)
++|.|+.|.|||+|+--++
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999999987543
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=58.36 E-value=3.7 Score=32.83 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.7
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+++--++.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999876643
No 348
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=58.33 E-value=3.8 Score=32.92 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=17.7
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 388999999999999886653
No 349
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=58.32 E-value=3.7 Score=33.12 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.||||++--++.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999976654
No 350
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=58.31 E-value=3.7 Score=32.60 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+++--++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 388999999999999876554
No 351
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=58.21 E-value=5.1 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|+|+-|.||||++--++.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHC
Confidence 388999999999999976654
No 352
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=58.06 E-value=5.6 Score=32.11 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 188 KALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 188 ~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
..+..+.+.+.. ...+.++|+|..|.|||+.+
T Consensus 29 ~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 29 TEIRRAIQILSR-RTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHhC-CCCCceEEECCCCCCHHHHH
Confidence 344555554433 34568899999999999876
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=58.05 E-value=5.4 Score=34.69 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.5
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|+|.-|.||||+.-.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998887765
No 354
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=58.03 E-value=10 Score=34.00 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.0
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
...+|.|+-|.||||++=.++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999887777544
No 355
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=58.02 E-value=34 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.6
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcC-CceEEEeCCCh
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFG-YSNIFVTSPSP 292 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g-~~~I~VTAPs~ 292 (333)
.+|.++-|-|||-....++..+...+ ..+++|.+|..
T Consensus 59 ~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 96 (500)
T 1z63_A 59 ICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS 96 (500)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH
Confidence 45566778888877666666666543 23688888843
No 356
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.01 E-value=6.7 Score=35.71 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.++|+|++|-|||+++=..+..+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999987777764
No 357
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.01 E-value=12 Score=35.19 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=25.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
+.++|+|+.|.|||+++=..+..+ +..-+.|.++.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~ 152 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS---GATFFSISASS 152 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHH
Confidence 579999999999999987665543 34345666654
No 358
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=58.00 E-value=4.5 Score=39.82 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+.|.|+.|.|||||+.+.+..+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478899999999999998877653
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=57.82 E-value=4.9 Score=35.61 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|||.-|.||||+.-+++..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998877754
No 360
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=57.76 E-value=4.6 Score=38.42 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+.|.|+.|.|||||+.+.+....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999998887754
No 361
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=57.69 E-value=5.7 Score=34.76 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|..|.||||++-+++..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999988776643
No 362
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=57.68 E-value=5.8 Score=34.20 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|..|.||||+.-+++..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988777765
No 363
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=57.56 E-value=3.9 Score=32.72 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=16.6
Q ss_pred eeeeeccCCCchhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~ 274 (333)
++|.|+.|-|||+|+--++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999987553
No 364
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=57.47 E-value=2.5 Score=38.06 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=40.9
Q ss_pred eeeEEecCCCChhhhhhhhhhhhhhcccchhhhhhhhhhhhccchhccccceeeeeccCCCchhHHHHHHHHHHHcCCce
Q psy18105 205 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSN 284 (333)
Q Consensus 205 ~lvlTAdRGRGKSAaLGla~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~vltA~RGRGKSallGla~a~~~~~g~~~ 284 (333)
.+|+|+|||= .| +|++-+....++.|.....++....+++.|++||+- +...|+ +
T Consensus 60 ~IvitSDrGL----------cG----~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~----------~~~~~~-~ 114 (230)
T 1fs0_G 60 YLVVSTDRGL----------CG----GLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSF----------FNSVGG-N 114 (230)
T ss_dssp EEEECCSSSC----------ST----THHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHH----------HHHHCC-C
T ss_pred EEEEeCCccc----------cc----cccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHH----------HHhCCC-c
Confidence 6899999993 11 232222334445555443343345688999997641 112243 2
Q ss_pred EE--Ee----CCChhhHHHHHHHHHhc
Q psy18105 285 IF--VT----SPSPENLNTFFQFIFKG 305 (333)
Q Consensus 285 I~--VT----APs~~~v~tlf~fa~~~ 305 (333)
|. .+ .|+.+.+..+.+.+...
T Consensus 115 i~~~~~~~~~~p~~~~a~~i~~~i~~~ 141 (230)
T 1fs0_G 115 VVAQVTGMGDNPSLSELIGPVKVMLQA 141 (230)
T ss_dssp EEEEECCCTTCCCSHHHHHHHHHHHHH
T ss_pred eEEeecCCCCCCCHHHHHHHHHHHHHH
Confidence 32 22 26666677776655443
No 365
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=57.37 E-value=13 Score=34.44 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=29.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHc------CCceEEEeCCCh
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAF------GYSNIFVTSPSP 292 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~------g~~~I~VTAPs~ 292 (333)
...+|.|+-|.|||+++=.+++..... |..-++|+....
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 478999999999999987777665432 444688888764
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=57.28 E-value=5.1 Score=31.81 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=17.4
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||+++--++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999976654
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=57.16 E-value=5.9 Score=34.32 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.5
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.+.|||.-|.||||+.-+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999888775
No 368
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=57.13 E-value=4.1 Score=32.44 Aligned_cols=18 Identities=44% Similarity=0.410 Sum_probs=15.8
Q ss_pred eeeeeccCCCchhHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLA 273 (333)
Q Consensus 256 ~vltA~RGRGKSallGla 273 (333)
++|.|+.|-|||+|+=-+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999998644
No 369
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.08 E-value=8.4 Score=34.26 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=24.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+++|+|+.|-|||+++=..+..+ +..-+.|.++
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 479999999999999997666655 3334555544
No 370
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=56.95 E-value=4 Score=33.22 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.7
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999876553
No 371
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=56.95 E-value=11 Score=34.65 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhcccc--eeeEEecCCCChhhhhh
Q psy18105 184 LDQGKALLKFIDSISEKTLRS--TVSLTAARGRGKSAALG 221 (333)
Q Consensus 184 ~dQ~~al~~l~~~~~~~~~r~--~lvlTAdRGRGKSAaLG 221 (333)
.++.+.+...++....+.... .++|+|.+|.|||+.+-
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 344455555444433333334 79999999999999883
No 372
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=56.92 E-value=7.4 Score=33.89 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=32.4
Q ss_pred cccccceEEEecCCCCCHHHHHHHhhhhccCcEEEE
Q psy18105 42 LGNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVL 77 (333)
Q Consensus 42 LGqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLIL 77 (333)
+...||++++|....-.++.+..+...++.||++++
T Consensus 139 ~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 139 NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred ccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 357899999999877788999999999999999977
No 373
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=56.89 E-value=5 Score=33.65 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.6
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.|||||+-.++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 889999999999999877654
No 374
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=56.85 E-value=12 Score=35.38 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=34.8
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHH
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFF 299 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf 299 (333)
++.++++++=|-||||+.--++..+...|+.-++|.+=...++..+|
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHh
Confidence 46789999999999999887777777778755666664444555555
No 375
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=56.81 E-value=5.4 Score=32.49 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.4
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.||||++--++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999986654
No 376
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=56.78 E-value=15 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHhhhcc---cceeeEEecCCCChhhhhh
Q psy18105 183 TLDQGKALLKFIDSISEKTL---RSTVSLTAARGRGKSAALG 221 (333)
Q Consensus 183 T~dQ~~al~~l~~~~~~~~~---r~~lvlTAdRGRGKSAaLG 221 (333)
...|.+++..+.+.+.+... .++++|+|..|.|||..+-
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 34667777766655543322 1799999999999998763
No 377
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=56.75 E-value=7.5 Score=37.75 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.||||||-+.+...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68899999999999999776544
No 378
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.72 E-value=5.3 Score=35.81 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
..++|+|+.|-|||+++=..+..+ +..-+.|.++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 89 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC---SATFLNISAAS 89 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHH
Confidence 468999999999999988666554 23234555543
No 379
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=56.70 E-value=5.2 Score=32.72 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.3
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||||+-.++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999987654
No 380
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=56.51 E-value=11 Score=33.89 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=25.9
Q ss_pred ceeeeeccCCCchh-HHHHHHHHHHHcCCceEEEeCCChhh---HHHHHHHHHhcch
Q psy18105 255 TVSLTAARGRGKSA-ALGLAVAGAVAFGYSNIFVTSPSPEN---LNTFFQFIFKGFD 307 (333)
Q Consensus 255 ~~vltA~RGRGKSa-llGla~a~~~~~g~~~I~VTAPs~~~---v~tlf~fa~~~L~ 307 (333)
..++||+-|.|||| |+|++--. ...|. +++|--|...+ ...+..+.....+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~-~~~g~-kVli~k~~~d~R~ge~~i~s~~g~~~~ 84 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRT-QFAKQ-HAIVFKPCIDNRYSEEDVVSHNGLKVK 84 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH-HHTTC-CEEEEECC-----------------CC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHCCC-EEEEEEeccCCcchHHHHHhhcCCeeE
Confidence 57899999999995 55665544 44455 67766687764 2345555533333
No 381
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=56.28 E-value=7 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccccceEEEecCCCCCHHHHHHHhhhhccCcEEEE
Q psy18105 43 GNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVL 77 (333)
Q Consensus 43 GqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLIL 77 (333)
...||++++|+.....++.+..+...++.||+|++
T Consensus 154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~ 188 (247)
T 1sui_A 154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGY 188 (247)
T ss_dssp TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEE
Confidence 46899999999877788999999999999999987
No 382
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=56.25 E-value=15 Score=34.01 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=23.9
Q ss_pred hccccceeeeeccCCCchhHHHHHHHHHHH
Q psy18105 250 KTLRSTVSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 250 ~~~~~~~vltA~RGRGKSallGla~a~~~~ 279 (333)
..+...++++|++|-||++++=.++..+..
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 334446899999999999999888877763
No 383
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=56.23 E-value=9.7 Score=32.00 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=34.3
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccch
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSL 85 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w 85 (333)
.+||+++.+....-.+..+..+...++.||.+++..+..+++
T Consensus 107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 148 (204)
T 3e05_A 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTL 148 (204)
T ss_dssp CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccH
Confidence 569999998866666678888999999999999988775443
No 384
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=56.20 E-value=4.4 Score=37.46 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.3
Q ss_pred cceeeeeccCCCchhHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~ 274 (333)
....|.|+.|.|||||+-+++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999988
No 385
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.18 E-value=5.3 Score=35.26 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
.+++|+|+.|.|||+++=..+..+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999998766654
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=56.00 E-value=7.1 Score=33.23 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.+.|+|+-|.||||++-+++..+...|
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 467999999999999999888887654
No 387
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.91 E-value=12 Score=34.36 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 184 LDQGKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 184 ~dQ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
.++.+.+...+.....+...+.++|+|.+|.|||+.+
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 4455555555544434444568999999999999877
No 388
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=55.90 E-value=8.7 Score=34.22 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.0
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCc--eEEEeCCChhh
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYS--NIFVTSPSPEN 294 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~--~I~VTAPs~~~ 294 (333)
+++++|+.|-|||+++=..+..+...+.. -+.+.+++...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 59999999999999998877776432211 25566665433
No 389
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=55.76 E-value=5.6 Score=31.33 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=17.4
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
+++.|+.|.|||+++--++.
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999876654
No 390
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=55.70 E-value=4.4 Score=33.70 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 389999999999999876654
No 391
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=55.69 E-value=17 Score=31.44 Aligned_cols=70 Identities=10% Similarity=0.037 Sum_probs=45.8
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccchhhhhcccccccccccccCCcCcchhHHHHHHHhhhcCC
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCN 123 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~w~~~~~~~~~~~~r~~~~~~~~v~~rF~~Rf~~~L~~~~ 123 (333)
..||++++|....-.++.|..+...++.||++++-... |..... .+..........++|...+...+
T Consensus 146 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~---~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 146 SSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVL---WDGSVA----------DLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS---GGGGGG----------CTTCCCHHHHHHHHHHHHHHHCT
T ss_pred CCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccc---cCCccc----------CccccchHHHHHHHHHHHHhhCC
Confidence 67999999976555678899999999999999985433 322110 01111223455677777777666
Q ss_pred ceE
Q psy18105 124 RCL 126 (333)
Q Consensus 124 ~~~ 126 (333)
.+-
T Consensus 213 ~~~ 215 (239)
T 2hnk_A 213 LVD 215 (239)
T ss_dssp TEE
T ss_pred CeE
Confidence 553
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=55.59 E-value=4.4 Score=33.48 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||||+-.++
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999987654
No 393
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=55.17 E-value=5.8 Score=31.20 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=17.6
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.|||+++--++..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999998765543
No 394
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=55.14 E-value=6 Score=31.78 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=18.6
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|.|||+|+--++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999766654
No 395
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.03 E-value=14 Score=34.71 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=32.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHH------cCCceEEEeCCChhhHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVA------FGYSNIFVTSPSPENLNTFFQ 300 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~------~g~~~I~VTAPs~~~v~tlf~ 300 (333)
...+|.|+-|.|||+++=.+++.... .|..-++|++-..-....+.+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 47899999999999998776665432 244468888876323333333
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=54.88 E-value=4.7 Score=32.86 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.0
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999986654
No 397
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.86 E-value=5.9 Score=34.78 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=23.1
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
++|.|+.|.|||+++=..+..+- ...|.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 89999999999999987665542 23466654
No 398
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=54.58 E-value=6.1 Score=38.69 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=25.2
Q ss_pred hhhhhhhccchhccccceeeeeccCCCchhHHHHHHHH
Q psy18105 239 ALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~vltA~RGRGKSallGla~a~ 276 (333)
.++++|...+.+. ..+.|+|+.|.|||||+-+++..
T Consensus 57 ~i~~~L~~~~~~~--~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 57 AISDALKEIDSSV--LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHCC--EEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhcccCC--eEEEEECCCCCcHHHHHHHHhCC
Confidence 4555555443322 25889999999999999987653
No 399
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.55 E-value=6.6 Score=36.28 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.8
Q ss_pred eeeeeccCCCchhHHHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVA 279 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~ 279 (333)
++++|+.|-|||+++-.++..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999888777653
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=54.46 E-value=5.3 Score=38.20 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=19.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+-|.||||||-+.+...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999866543
No 401
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=54.42 E-value=6 Score=31.64 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.8
Q ss_pred eeeeeccCCCchhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~ 274 (333)
++|.|+.|-|||+|+--++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 8999999999999987554
No 402
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=54.32 E-value=14 Score=35.09 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=34.1
Q ss_pred cccceeeeeccCCCchhHHHHHHHHHH--HcCCceEEEeCCChhhHHHHH
Q psy18105 252 LRSTVSLTAARGRGKSAALGLAVAGAV--AFGYSNIFVTSPSPENLNTFF 299 (333)
Q Consensus 252 ~~~~~vltA~RGRGKSallGla~a~~~--~~g~~~I~VTAPs~~~v~tlf 299 (333)
-++.++++++-|-||||+.--++..+. ..|+.-++|.+=...++..+|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~ 66 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAF 66 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHh
Confidence 346889999999999999887777776 667755666663334444444
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=54.31 E-value=4.6 Score=32.85 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=18.4
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|.|||+|+--++..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999998766643
No 404
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=54.29 E-value=14 Score=35.02 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=32.7
Q ss_pred ccccceeeeeccCCCchhHHHHHHHHHH--HcCCceEEEeCCChhhHHHHHH
Q psy18105 251 TLRSTVSLTAARGRGKSAALGLAVAGAV--AFGYSNIFVTSPSPENLNTFFQ 300 (333)
Q Consensus 251 ~~~~~~vltA~RGRGKSallGla~a~~~--~~g~~~I~VTAPs~~~v~tlf~ 300 (333)
..++.++.+++-|-|||++.--++..+. +.|+.-++|.+=-..|+..+|.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg 67 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFG 67 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhC
Confidence 4467889999999999998776666666 5676444444411245555553
No 405
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=54.28 E-value=21 Score=36.71 Aligned_cols=21 Identities=10% Similarity=-0.017 Sum_probs=16.3
Q ss_pred eEEEeCCChhhHHHHHHHHHh
Q psy18105 284 NIFVTSPSPENLNTFFQFIFK 304 (333)
Q Consensus 284 ~I~VTAPs~~~v~tlf~fa~~ 304 (333)
.++|-+|+..-++.+++-+..
T Consensus 55 ~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 55 PALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEecCHHHHHHHHHHHHH
Confidence 588889999988888865443
No 406
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=54.25 E-value=10 Score=34.79 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=30.4
Q ss_pred ccccceEEEecCCC--------CCHHHHHHHhhhhccCcEEEEEeC
Q psy18105 43 GNTYGMCVLQDFEA--------LTPNLLARTIETVEGGGVIVLLLR 80 (333)
Q Consensus 43 GqE~d~lIlD~~~g--------l~PNaLaalaGTVrGGGlLILL~P 80 (333)
...||++|.|..+. +..+.+..+...++.||++++-+.
T Consensus 161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 56799999998765 457889999999999999999654
No 407
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=54.22 E-value=5.7 Score=37.71 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=25.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.++|+|+-|.||||++-+++..+-. ....|.+.-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~ 210 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF-DQRLITIED 210 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECC
Confidence 6889999999999999988766543 222455553
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=54.18 E-value=4.9 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.5
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48899999999999987665
No 409
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=54.04 E-value=6.1 Score=32.00 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.2
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
.++|.|+.|-|||||+-.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999987653
No 410
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=53.96 E-value=19 Score=32.59 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=24.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+++.++-|-|||++.=-.+..+...|+.-+++..-
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 478899999999999544455555668744344443
No 411
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=53.96 E-value=6.2 Score=31.19 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=17.5
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||+++--++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999886654
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=53.82 E-value=4.8 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.024 Sum_probs=16.2
Q ss_pred eeeeeccCCCchhHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~ 274 (333)
++|.|+.|.|||+++--++
T Consensus 11 i~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999985443
No 413
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=53.75 E-value=9.1 Score=34.47 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.8
Q ss_pred ceeeEEecCCCChhhhh
Q psy18105 204 STVSLTAARGRGKSAAL 220 (333)
Q Consensus 204 ~~lvlTAdRGRGKSAaL 220 (333)
+.++|+|.||.|||+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999987
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=53.75 E-value=6.3 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.5
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|.|||+++--++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999876543
No 415
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=53.61 E-value=5.3 Score=37.63 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.2
Q ss_pred cccceeeeeccCCCchhHHHHHHHHHH
Q psy18105 252 LRSTVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 252 ~~~~~vltA~RGRGKSallGla~a~~~ 278 (333)
+...+.|+|+-|.|||||+=+++..+.
T Consensus 169 lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 169 FAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999998776643
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=53.59 E-value=4.8 Score=33.18 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=17.0
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 19 ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999987543
No 417
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=53.58 E-value=11 Score=34.86 Aligned_cols=36 Identities=14% Similarity=-0.069 Sum_probs=26.7
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
...+|+|..|-|||+++=..+..+...|..-++++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 478999999999999987777666655643345543
No 418
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.55 E-value=7.3 Score=35.52 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.2
Q ss_pred hcccceeeEEecCCCChhhhhh
Q psy18105 200 KTLRSTVSLTAARGRGKSAALG 221 (333)
Q Consensus 200 ~~~r~~lvlTAdRGRGKSAaLG 221 (333)
....+.++|+|.+|.|||+.+-
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4445689999999999998873
No 419
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=53.51 E-value=4.9 Score=32.38 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=17.4
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|-|||+|+--++
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 38899999999999997665
No 420
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=53.48 E-value=15 Score=31.47 Aligned_cols=38 Identities=24% Similarity=0.101 Sum_probs=31.8
Q ss_pred ccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCccc
Q psy18105 45 TYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSS 84 (333)
Q Consensus 45 E~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~~ 84 (333)
.||+++++. ++++..+..+...++.||.+++-++..++
T Consensus 122 ~~D~v~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 159 (204)
T 3njr_A 122 LPEAVFIGG--GGSQALYDRLWEWLAPGTRIVANAVTLES 159 (204)
T ss_dssp CCSEEEECS--CCCHHHHHHHHHHSCTTCEEEEEECSHHH
T ss_pred CCCEEEECC--cccHHHHHHHHHhcCCCcEEEEEecCccc
Confidence 699999887 56777888999999999999998876443
No 421
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=53.33 E-value=4.7 Score=33.74 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=16.8
Q ss_pred ceeeeeccCCCchhHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLA 273 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla 273 (333)
-++|.|+.|-|||+|+--+
T Consensus 31 ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3999999999999998854
No 422
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=53.29 E-value=6 Score=32.36 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=33.5
Q ss_pred ccccceEEEecC--CCCCHHHHHHH--hhhhccCcEEEEEeCCccchh
Q psy18105 43 GNTYGMCVLQDF--EALTPNLLART--IETVEGGGVIVLLLRTLSSLK 86 (333)
Q Consensus 43 GqE~d~lIlD~~--~gl~PNaLaal--aGTVrGGGlLILL~P~~~~w~ 86 (333)
...||+++.|.. ....++.+..+ ...++.||++++.+|....++
T Consensus 114 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~ 161 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLP 161 (187)
T ss_dssp TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCCC
T ss_pred CCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccccc
Confidence 678999999864 34456667777 677999999999998865543
No 423
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=53.10 E-value=6.8 Score=32.67 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.0
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|-|||+++-.++.
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999886654
No 424
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.05 E-value=14 Score=39.76 Aligned_cols=54 Identities=15% Similarity=0.018 Sum_probs=40.3
Q ss_pred eeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHHhcchhccc
Q psy18105 257 SLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAY 311 (333)
Q Consensus 257 vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~~~L~~lg~ 311 (333)
|..++-|.|||.+.+|.+......|. .++|-+|+.+=+...++.+.+-.+.+|+
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~g~-~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALTGK-GVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTSS-CCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeecCCchHHHHHHHHHHHHHHcCC-cEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 77899999999999988864333354 6889999999877777666555454554
No 425
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=53.02 E-value=6.3 Score=31.71 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.7
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.||||++--++.
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999986543
No 426
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=52.99 E-value=4.4 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=23.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.+.|.|.-|.||||++-+++.. .| +|.++.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~---~g--~v~~~~ 51 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY---KN--DICLLT 51 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG---TT--TEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhc---cC--CeEEEe
Confidence 5889999999999999876654 22 577765
No 427
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.99 E-value=4.6 Score=37.97 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=25.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAP 290 (333)
.+.|+|+-|.||||++-+++..+.. ....|.+-.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCe
Confidence 6889999999999999987765543 2235666544
No 428
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=52.86 E-value=5.1 Score=32.34 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=17.3
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||+|+--++.
T Consensus 13 i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 89999999999999876543
No 429
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=52.80 E-value=5.1 Score=32.92 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.6
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-+++.|+.|.||||++--++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999876644
No 430
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=52.74 E-value=4.3 Score=33.04 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=9.0
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 10 ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999986554
No 431
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=52.66 E-value=15 Score=36.85 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.3
Q ss_pred ccceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 253 ~~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
++.++++|+-|-||||+.--++..+.+.|+.-++|.+
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3578999999999999998888888888875455544
No 432
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=52.49 E-value=5.3 Score=32.95 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.8
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.|||+|+--++..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999998765543
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=52.48 E-value=7.4 Score=37.56 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=20.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..++|.|+.|.||||++-+++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999887653
No 434
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=52.44 E-value=5.3 Score=33.67 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.1
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|-|||||+=.++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999987553
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=52.44 E-value=7.6 Score=33.82 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.8
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.++|+|.-|.||||+.-+++..+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999988777665
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=52.38 E-value=6.7 Score=31.78 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.2
Q ss_pred eeeeeccCCCchhHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~ 276 (333)
++|.|+.|.|||+|+--++..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999877643
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=52.36 E-value=5.2 Score=32.99 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999876553
No 438
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=52.23 E-value=6.2 Score=39.26 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=34.4
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF 303 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa~ 303 (333)
+..+|+|.-|.|||+++=-.+ . ..+++|.+|+.++.+.+-+-+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~----~--~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRV----N--FEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHC----C--TTTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHh----c--cCCeEEEeCCHHHHHHHHHHhh
Confidence 577899999999999883222 1 1468999999999988877664
No 439
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.17 E-value=6.8 Score=35.07 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=23.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.++|.|+.|.|||+++=..+..+- .+ .|.|..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~-~~--~i~~~~ 106 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR-VP--FITASG 106 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT-CC--EEEEEH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC-CC--EEEecH
Confidence 389999999999999976665542 23 466654
No 440
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=52.16 E-value=5.7 Score=38.26 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.2
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..+.|.|+-|-|||||+=+++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999998776544
No 441
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=52.03 E-value=5 Score=38.18 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.4
Q ss_pred cceeeeeccCCCchhHHHH
Q psy18105 254 STVSLTAARGRGKSAALGL 272 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGl 272 (333)
...+|+|+-|.||||++=.
T Consensus 24 g~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3688999999999999943
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=51.98 E-value=5.2 Score=33.12 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=17.1
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 38999999999999986554
No 443
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=51.88 E-value=5.4 Score=32.58 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=15.5
Q ss_pred ceeeeeccCCCchhHHH
Q psy18105 255 TVSLTAARGRGKSAALG 271 (333)
Q Consensus 255 ~~vltA~RGRGKSallG 271 (333)
-++|.|+.|-|||+|+-
T Consensus 16 ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999984
No 444
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=51.84 E-value=10 Score=36.65 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=19.2
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|.|+.|.|||||+=+.+...
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68899999999999998766543
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=51.57 E-value=8.2 Score=34.48 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=22.8
Q ss_pred hhhccchhccc-cceeeeeccCCCchhHHHHHHH
Q psy18105 243 FIDGISEKTLR-STVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 243 ~~~~~~~~~~~-~~~vltA~RGRGKSallGla~a 275 (333)
.+..+.++..+ .-+++.|+.|.|||||+.-++.
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34444433332 3588999999999999987664
No 446
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=51.53 E-value=13 Score=34.18 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=43.1
Q ss_pred Ccchhhhhcc--ccceeehhhhh---hhcccccceEEEecCCC--CCHHHHHHHhhhhccCcEEEEEeC
Q psy18105 19 DPFELFVAST--NIRYTYYSETH---KILGNTYGMCVLQDFEA--LTPNLLARTIETVEGGGVIVLLLR 80 (333)
Q Consensus 19 ~~~~~f~~~~--~i~~~~yk~a~---~lLGqE~d~lIlD~~~g--l~PNaLaalaGTVrGGGlLILL~P 80 (333)
+.|...++.. ++.+++..+.. .-| ..||++|+++... ++++.+.++..-|+.||-||++--
T Consensus 20 ~~l~~aL~~~g~~V~~i~~~~~~~~~~~L-~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG 87 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYIPSHVGLDVGELL-AKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGG 87 (259)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCBCSSHHH-HTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHhCCceEEEecccccccChhHH-hcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecC
Confidence 4455555543 45555555442 223 5899999997654 999999999999998888888754
No 447
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=51.52 E-value=11 Score=38.45 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 182 KTLDQGKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 182 ~T~dQ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
.|++|.+++.. ...|++|.|.-|.|||.+|
T Consensus 3 L~~~Q~~av~~---------~~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 3 LNPGQQQAVEF---------VTGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CCHHHHHHHHC---------CSSEEEECCCTTSCHHHHH
T ss_pred CCHHHHHHHhC---------CCCCEEEEeCCCCChHHHH
Confidence 57899998643 2578999999999999988
No 448
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=51.45 E-value=7 Score=32.44 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.5
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|.|||||+--++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999866543
No 449
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=51.27 E-value=7.9 Score=36.59 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+.|+|+-|.||||++-++...+-
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999988766654
No 450
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=51.20 E-value=5.7 Score=32.85 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.6
Q ss_pred eeeeeccCCCchhHHHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~ 277 (333)
++|.|+.|-|||+|+--++..-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999997666543
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=51.10 E-value=5.6 Score=33.09 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999876554
No 452
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=51.06 E-value=12 Score=34.89 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.7
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.+.|+|+=|-||||..-=+++.|.+.|+ +|++-
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllI 82 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 82 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4556899999999999988888888887 56554
No 453
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=51.05 E-value=5.8 Score=33.20 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=17.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999876543
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=51.02 E-value=11 Score=36.50 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=23.4
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTS 289 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTA 289 (333)
.+.|.|+-|.||||||=+.+.... . ..+|.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G 81 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDG 81 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESS
T ss_pred EEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECC
Confidence 688999999999999987765433 2 23566543
No 455
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=51.01 E-value=7.6 Score=33.06 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|..|.||||+.-+++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999987776543
No 456
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=50.77 E-value=5.7 Score=32.74 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999876543
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=50.75 E-value=5.9 Score=32.57 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+++--++
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999987554
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.72 E-value=6.4 Score=36.86 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=19.3
Q ss_pred ceeeeeccCCCchhHHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~ 277 (333)
.+.|+|+-|.|||||+-+++..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68899999999999998765543
No 459
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=50.72 E-value=9.5 Score=32.29 Aligned_cols=36 Identities=6% Similarity=0.069 Sum_probs=31.4
Q ss_pred cccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEE
Q psy18105 42 LGNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLL 78 (333)
Q Consensus 42 LGqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL 78 (333)
+.. ||++++|......+..+..+...++.||++++-
T Consensus 124 ~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 124 QRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp CCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 344 999999988778899999999999999999873
No 460
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=50.72 E-value=5.8 Score=32.06 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999876654
No 461
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=50.65 E-value=5.7 Score=32.59 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=17.9
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 389999999999999876654
No 462
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.61 E-value=11 Score=34.97 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHHHHHH-HHHhhh--cccceeeE--EecCCCChhhhhh
Q psy18105 185 DQGKALLKFI-DSISEK--TLRSTVSL--TAARGRGKSAALG 221 (333)
Q Consensus 185 dQ~~al~~l~-~~~~~~--~~r~~lvl--TAdRGRGKSAaLG 221 (333)
++.+.|...+ ..+..+ ...+.++| +|.+|.|||+.+-
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 4444455544 443344 34567888 9999999998873
No 463
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=50.54 E-value=5.9 Score=33.21 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=17.4
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+++--++.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999865543
No 464
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=50.48 E-value=7.3 Score=34.30 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++++|+-|.|||+++-.++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999988765554
No 465
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=50.47 E-value=5.8 Score=32.42 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+++--++
T Consensus 20 ~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999987654
No 466
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=50.25 E-value=6 Score=33.01 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.4
Q ss_pred ceeeeeccCCCchhHHH
Q psy18105 255 TVSLTAARGRGKSAALG 271 (333)
Q Consensus 255 ~~vltA~RGRGKSallG 271 (333)
-++|.|+.|-|||+|+-
T Consensus 22 ki~~vG~~~vGKTsLi~ 38 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQK 38 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999999975
No 467
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=50.20 E-value=5.8 Score=33.10 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 22 ~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999997555
No 468
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=50.14 E-value=17 Score=29.72 Aligned_cols=41 Identities=10% Similarity=0.244 Sum_probs=29.2
Q ss_pred hcccccceEEEecCC-CC-------CH----HHHHHHhhhhccCcEEEEEeCC
Q psy18105 41 ILGNTYGMCVLQDFE-AL-------TP----NLLARTIETVEGGGVIVLLLRT 81 (333)
Q Consensus 41 lLGqE~d~lIlD~~~-gl-------~P----NaLaalaGTVrGGGlLILL~P~ 81 (333)
++...||+++++... .. .| .+|..+...++.||.+++.+.+
T Consensus 85 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 85 YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp TCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred hccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 567789999988411 11 33 5678888999999999998753
No 469
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=49.98 E-value=14 Score=32.04 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=31.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEE--eCCChhhHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFV--TSPSPENLNTFF 299 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~V--TAPs~~~v~tlf 299 (333)
...|..++-|-||||+.--++..+.+.|+ +|++ +-|...++..+|
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD~D~~~~~~~~~l 50 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGK-KTVVIDFAIGLRNLDLIM 50 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEECCCSSCCHHHHT
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCC-cEEEEECCCCCCChhHHh
Confidence 45677889999999999888888887776 5555 334345555443
No 470
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=49.95 E-value=5.2 Score=32.39 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=17.6
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|-|||+++=-++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999875554
No 471
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=49.91 E-value=6 Score=32.77 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=17.7
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||||+--++.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999876654
No 472
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=49.89 E-value=9.7 Score=30.89 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=32.3
Q ss_pred cccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCcc
Q psy18105 44 NTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLS 83 (333)
Q Consensus 44 qE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL~P~~~ 83 (333)
..||+++.+..-.--...+..+...++.||.+++..+..+
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~ 138 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLE 138 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcc
Confidence 3799999887644457888899999999999999887643
No 473
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=49.79 E-value=6 Score=32.92 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.4
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||+|+--++.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999976653
No 474
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=49.79 E-value=6.1 Score=34.76 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=31.7
Q ss_pred ccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEE
Q psy18105 43 GNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLL 78 (333)
Q Consensus 43 GqE~d~lIlD~~~gl~PNaLaalaGTVrGGGlLILL 78 (333)
...||++++|+.....++.+..+...++.||+|++-
T Consensus 145 ~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 145 EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 367999999988777789999999999999998873
No 475
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=49.71 E-value=9.4 Score=33.91 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.8
Q ss_pred cceeeeeccCCCchhHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGA 277 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~ 277 (333)
..+.|||.+|.||+++..++...+
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHc
Confidence 468999999999999999887754
No 476
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=49.66 E-value=10 Score=33.73 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=24.2
Q ss_pred hhhhhhccchhccc-cceeeeeccCCCchhHHHHHHH
Q psy18105 240 LLKFIDGISEKTLR-STVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 240 ~~~~~~~~~~~~~~-~~~vltA~RGRGKSallGla~a 275 (333)
+.+++..+..+..+ .-++|.|+-|.||||++--++.
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444444443222 4589999999999999986664
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=49.66 E-value=25 Score=31.29 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.1
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHH-cCCceEEE-e-CCC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVA-FGYSNIFV-T-SPS 291 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~-~g~~~I~V-T-APs 291 (333)
.+++.|.-|.||||++-.++..+-. .|+. +++ | -|.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~-v~~~treP~ 61 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVN-NVVLTREPG 61 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGG-GEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCce-eeEeeeCCC
Confidence 5889999999999999999999887 7764 444 5 443
No 478
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=49.62 E-value=9.8 Score=35.12 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=22.5
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcC
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFG 281 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g 281 (333)
.+.|+|+-|.||||++-+++..+-..|
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 477999999999999998888776543
No 479
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=49.32 E-value=28 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=26.9
Q ss_pred eeeeeccCCCchhHHHHHHHHHHHcCCceEEEe
Q psy18105 256 VSLTAARGRGKSAALGLAVAGAVAFGYSNIFVT 288 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a~~~~~g~~~I~VT 288 (333)
.++-|.=|.||||.+-+++..+.+.|+ ++++|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~-~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK-KVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 467789999999999999999998887 45555
No 480
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=49.31 E-value=6.1 Score=33.02 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.4
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 30 ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 38999999999999997655
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=49.30 E-value=17 Score=34.73 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=30.1
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCC
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPS 291 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs 291 (333)
+..+|.|+-|-|||+++=-+++.+...|..-++|++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 47889999999999998777777766666567777664
No 482
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=49.29 E-value=8.1 Score=31.20 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.1
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|.|||||+--++.
T Consensus 8 i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999975543
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=49.28 E-value=8.3 Score=31.68 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=18.2
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||||+--++.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999987665
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=49.26 E-value=14 Score=36.67 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=32.3
Q ss_pred cceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI 302 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~tlf~fa 302 (333)
..+.|+|+-|.|||+|+=.++..+...|..-++++.-.+ ..+++..+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~ 328 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNA 328 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHH
Confidence 378999999999999999888777665653356654332 23454443
No 485
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=49.05 E-value=6.2 Score=33.31 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.8
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|.|||+|+--++
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999986444
No 486
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.04 E-value=7.5 Score=35.41 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=20.9
Q ss_pred cceeeeeccCCCchhHHHHHHHHHH
Q psy18105 254 STVSLTAARGRGKSAALGLAVAGAV 278 (333)
Q Consensus 254 ~~~vltA~RGRGKSallGla~a~~~ 278 (333)
.+++|+|+.|-|||+++=..+..+-
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3699999999999999987766553
No 487
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=48.98 E-value=12 Score=33.92 Aligned_cols=44 Identities=5% Similarity=0.235 Sum_probs=34.2
Q ss_pred hhhhhc--ccccceEEEecCCC-------CCHHHHHHHhhhhccCcEEEEEeC
Q psy18105 37 ETHKIL--GNTYGMCVLQDFEA-------LTPNLLARTIETVEGGGVIVLLLR 80 (333)
Q Consensus 37 ~a~~lL--GqE~d~lIlD~~~g-------l~PNaLaalaGTVrGGGlLILL~P 80 (333)
++.++| ...||++|+|.... ++.+.+..+...++.||++++-+.
T Consensus 142 D~~~~l~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 142 DGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CHHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHHHhcccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 344444 67899999999753 257789999999999999998653
No 488
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=48.97 E-value=8.7 Score=34.77 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=24.9
Q ss_pred ceeeeeccCCCchhHHHHHHHHHHHcCCceEEEeCCChhhHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLN 296 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~~~~~g~~~I~VTAPs~~~v~ 296 (333)
.+.|||.+|.||||+.-++... .| +-+.+|+....+
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g---~~~~~~~~~~~~ 38 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YS---AVKYQLAGPIKD 38 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SC---EEECCTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cC---CeEEecChHHHH
Confidence 3679999999999999877554 24 335666544333
No 489
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=48.97 E-value=14 Score=34.21 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 184 LDQGKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 184 ~dQ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
+.|.++...+...+.+++..+.+.++|..|.||++..
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 5667777788877877777778999999999999765
No 490
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=48.95 E-value=6.3 Score=32.79 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=17.1
Q ss_pred eeeeeccCCCchhHHHHHHH
Q psy18105 256 VSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 256 ~vltA~RGRGKSallGla~a 275 (333)
++|.|+.|-|||+|+--++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999875543
No 491
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=48.94 E-value=6.3 Score=32.73 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=17.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
-++|.|+.|-|||+++--++
T Consensus 22 ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999987655
No 492
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=48.89 E-value=8 Score=31.83 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+--++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 389999999999999876554
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=48.84 E-value=6.4 Score=32.19 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|-|||+|+--++.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999876654
No 494
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=48.77 E-value=14 Score=38.22 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhcccceeeEEecCCCChhhhhhhhhhhh
Q psy18105 181 CKTLDQGKALLKFIDSISEKTLRSTVSLTAARGRGKSAALGLAVAGA 227 (333)
Q Consensus 181 ~~T~dQ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaLGla~~~~ 227 (333)
.++++|.+|+.. ...|++|.|.-|.|||.+|=--++++
T Consensus 11 ~Ln~~Q~~av~~---------~~g~~lV~AgAGSGKT~vL~~ri~~l 48 (724)
T 1pjr_A 11 HLNKEQQEAVRT---------TEGPLLIMAGAGSGKTRVLTHRIAYL 48 (724)
T ss_dssp TSCHHHHHHHHC---------CSSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC---------CCCCEEEEEcCCCCHHHHHHHHHHHH
Confidence 368899998643 24689999999999999883333333
No 495
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=48.72 E-value=8 Score=35.20 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.3
Q ss_pred ceeeeeccCCCchhHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAV 274 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~ 274 (333)
.++|||.-|.||||++-+++
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998887
No 496
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.62 E-value=13 Score=31.31 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhcccceeeEEecCCCChhhhh
Q psy18105 187 GKALLKFIDSISEKTLRSTVSLTAARGRGKSAAL 220 (333)
Q Consensus 187 ~~al~~l~~~~~~~~~r~~lvlTAdRGRGKSAaL 220 (333)
.+++..+...+ .....++++|+|..|.|||+.+
T Consensus 37 ~~~~~~l~~~~-~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 37 DELIGALKSAA-SGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp HHHHHHHHHHH-HTCSCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHH
Confidence 34444444333 3335679999999999999877
No 497
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=48.49 E-value=6.5 Score=32.63 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.5
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+|+=-++.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 389999999999999865543
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=48.29 E-value=6.5 Score=32.68 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.3
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
-++|.|+.|-|||+|+--++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999765543
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=48.27 E-value=9.1 Score=34.37 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.0
Q ss_pred ceeeeeccCCCchhHHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVAG 276 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a~ 276 (333)
.++|+|.-|.||||+.-.++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999998877764
No 500
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=48.20 E-value=8.5 Score=30.98 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.8
Q ss_pred ceeeeeccCCCchhHHHHHHH
Q psy18105 255 TVSLTAARGRGKSAALGLAVA 275 (333)
Q Consensus 255 ~~vltA~RGRGKSallGla~a 275 (333)
-++|.|+.|.|||+++--++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999876654
Done!