RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18105
(333 letters)
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 152 bits (385), Expect = 1e-41
Identities = 39/303 (12%), Positives = 71/303 (23%), Gaps = 94/303 (31%)
Query: 18 DDPFELFVASTNIRYTYYSETHKILGNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVL 77
D + + S +LG + V A T++ G +VL
Sbjct: 45 GDWLWISPRPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWLVL 104
Query: 78 LLRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERFLLSLSSCNRCLVV-DDQLTVLP 136
LL + R+ F + L++ N ++ +Q L
Sbjct: 105 LLPVWEEWENQPDAD---SLRWSDCPDPIATPHFVQHLKRVLTADNEAILWRQNQPFSLA 161
Query: 137 ITSQHVLNITPVSKTSDLSQQEQELNALKTSLKDTQPVSALIDCCKTLDQGKALLKFIDS 196
+ + +Q + L + +
Sbjct: 162 HFTP-------------------------------RTDWYPATGAPQPEQQQLLKQLM-- 188
Query: 197 ISEKTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTV 256
++TAARGRGKSA G ++ +
Sbjct: 189 ---TMPPGVAAVTAARGRGKSALAGQLISR-------------------------IAGRA 220
Query: 257 SLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAYQEHLD 316
+TA P+ + + QF + F +A L
Sbjct: 221 IVTA-----------------------------PAKASTDVLAQFAGEKFRFIAPDALLA 251
Query: 317 YSI 319
Sbjct: 252 SDE 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 5e-08
Identities = 53/301 (17%), Positives = 99/301 (32%), Gaps = 77/301 (25%)
Query: 2 KSVQRKVQAGKLNVNED---DPFELFVASTNIRYTYYSETHKILGNT------YGMCVLQ 52
+ VQ+ V+ L +N P + ++ Y E L N Y + LQ
Sbjct: 77 EMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 53 DFEALTPNLL----ARTIETVEG-GGV--IVLLLRTLSSLKQLYTMSMDIHERYRTEAHS 105
+ L LL A+ + ++G G + L S K
Sbjct: 136 PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYK------------------- 175
Query: 106 DVVCRFNER-FLLSLSSCNRCLVVDDQLTVLPITSQHVLNITPVSKTSDLSQQEQELNAL 164
V C+ + + F L+L +CN V + L L + ++ S++ S + ++++
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 165 KTSLKDTQ-----PVSALIDCCKTLD--QGKALLKFIDSISEKTLRSTVSLTAARGRGKS 217
+ L+ L+ L Q + +S K L +T R + +
Sbjct: 231 QAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFN-LSCKILLTT------RFKQVT 278
Query: 218 AALGLAVAGAVAFG-YSNIFGKA-----LLKFIDGISEKTLRS--------TVSLTAARG 263
L A ++ +S LLK++ + L +S+ A
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 264 R 264
R
Sbjct: 338 R 338
Score = 41.0 bits (95), Expect = 5e-04
Identities = 36/269 (13%), Positives = 72/269 (26%), Gaps = 88/269 (32%)
Query: 10 AGKLNVNEDD-PFE----------LFVAST---NIRYTYYSE-THKILGNTYGMCV---- 50
L+ D P E + S + + L +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 51 ---LQD-FEAL---------TPNLLAR-----TIETVEGGGVIVLLLRTLSSLKQ----- 87
+ F+ L LL+ V V+V L S +++
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKES 424
Query: 88 ---LYTMSMDI--HERYRTEAHSDVVCRFNERFLLSLSSCNRCLVVDDQLTVLPITSQ-- 140
+ ++ +++ H +V +N + DD + P Q
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIP---------KTFDSDD--LIPPYLDQYF 473
Query: 141 ------HVLNITPVSKTS-------DLSQQEQELNALKTSLKDTQPVSALI--------- 178
H+ NI + + D EQ++ T+ + + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 179 --DCCKTLDQG-KALLKFIDSISEKTLRS 204
D ++ A+L F+ I E + S
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICS 562
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 119/287 (41%)
Query: 91 MSMDIHERY--------RTEAHSDVVCRFNERFLLSLSSCNRCLVVDD---QLTVL---- 135
M MD+++ R + H F + + S+ +V + LT+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNH------FKDTYGFSILD-----IVINNPVNLTIHFGGE 1679
Query: 136 ----------PITSQHVLNITPVSK------TSDLSQ-----QEQELNALKTSLKDTQPV 174
+ + +++ ++ + ++ L+A T TQP
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQF--TQPA 1735
Query: 175 SALIDCCKTLDQGKALLKFIDSISEKTLRSTVSLTAARGRGKS----AALGLAVAGAVAF 230
L+ KA + + K L + A G S AAL ++A
Sbjct: 1736 LTLM--------EKAAFE---DLKSKGLIPADATFA----GHSLGEYAAL-ASLADV--- 1776
Query: 231 GYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSP 290
+ V + RG + +AV G SN + +
Sbjct: 1777 ----------MSIES---------LVEVVFYRGM----TMQVAVPRD-ELGRSNYGMIAI 1812
Query: 291 SPENLNTFFQFIFKGFDALAYQEHLDYSIVQSTEPE---------YN 328
+P + F QE L Y +V+ YN
Sbjct: 1813 NPGR-------VAASFS----QEALQY-VVERVGKRTGWLVEIVNYN 1847
Score = 44.3 bits (104), Expect = 4e-05
Identities = 52/301 (17%), Positives = 108/301 (35%), Gaps = 79/301 (26%)
Query: 23 LFVASTNIRYTYYSETHKILGNTY--GMCVLQDF--EALTPNLLARTIETVEGGGVIVLL 78
+ +A T+ +++ K + + G+ + + +L P++L ++E EG +L
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 79 LRTLSSLKQLYTMSMDIHERYRTEAHSDVVCRFNERF----LLSLSSCN--RCLVVDDQL 132
+ L + +Q+ + + V + N + +S N + LVV
Sbjct: 341 ISNL-TQEQV-------------QDY---VNKTNSHLPAGKQVEISLVNGAKNLVV---- 379
Query: 133 TVLPITSQHVLNIT--PVSKTSDLSQQEQELNALKTSLKDTQ--PVSA------LIDCCK 182
+ P S + LN+T S L Q + K + PV++ L+
Sbjct: 380 SGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVASPFHSHLLVPASD 437
Query: 183 TLDQGKALLKFIDSISEKTLRSTV--SLTAARGRGKSAALGLAVA-----------GAVA 229
+++ L+K S + K ++ V + + R S ++ +
Sbjct: 438 LINK--DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 230 FGYSNI--FGKALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGAV------AFG 281
F ++I FG G+ T R+ G G + + VAG + +G
Sbjct: 496 FKATHILDFGPGGAS---GLGVLTHRNK------DGTG----VRVIVAGTLDINPDDDYG 542
Query: 282 Y 282
+
Sbjct: 543 F 543
Score = 40.8 bits (95), Expect = 6e-04
Identities = 56/376 (14%), Positives = 105/376 (27%), Gaps = 126/376 (33%)
Query: 20 PFELFVASTNIRYTYYSETHKILGNTYGMC-VLQD-FEALTPNLLARTIETVEGGGVIVL 77
P L + ++ + T ++ + LQ+ F + P E L
Sbjct: 8 PLTL--SHGSLEHVLLVPT-----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 78 LLRTLSSLKQLYTMSMDIHERYRTEAHSDVV----CRFNERFLLSLSSCNRCLVVDDQLT 133
+ + L Y S+ E + V+ F +L +D
Sbjct: 61 VGKFLG-----YVSSLV--EPSKVGQFDQVLNLCLTEFENCYLEG----------ND--- 100
Query: 134 VLPITSQH--VLNITPVSKTSDLSQQEQELNALKTSLKDTQPV-----SALIDCCKTLD- 185
I H + + T+ + +E N + + +P SAL +
Sbjct: 101 ---I---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 186 --------QG----------------KALLK-FIDSISE---KTLRSTVSLTAARGRG-- 215
QG L+ I +E + +R+T+ +G
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 216 -----------------KSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSL 258
S + + G + + + K L G + LRS +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-----GFTPGELRSYLKG 269
Query: 259 TAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAY-----QE 313
+G A+ A+A + S E+ FF + K L + E
Sbjct: 270 ATGHSQGLVTAV--AIA------------ETDSWES---FFVSVRKAITVLFFIGVRCYE 312
Query: 314 H-----LDYSIVQSTE 324
L SI++ +
Sbjct: 313 AYPNTSLPPSILEDSL 328
Score = 28.1 bits (62), Expect = 5.6
Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 25/66 (37%)
Query: 33 TYYSETHKIL----GNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLLRTLSS---- 84
T + TH IL G G+ VL T +G GV V++ TL
Sbjct: 494 TQFKATH-ILDFGPGGASGLGVL-------------THRNKDGTGVRVIVAGTLDINPDD 539
Query: 85 ---LKQ 87
KQ
Sbjct: 540 DYGFKQ 545
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 157 QEQELNALKTSLK----DTQP---VSALID 179
++Q L L+ SLK D+ P + A ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.1
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 196 SISEKTLRSTVSLTAARGRGKSAALGLAVAGAV 228
++ K L++++ L A SA LA+ +
Sbjct: 21 AL--KKLQASLKLYAD----DSAP-ALAIKATM 46
Score = 28.0 bits (61), Expect = 3.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 250 KTLRSTVSLTAARGRGKSAALGLAVAGAV 278
K L++++ L A SA LA+ +
Sbjct: 23 KKLQASLKLYAD----DSAP-ALAIKATM 46
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 37.6 bits (88), Expect = 0.003
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
ARG+G+S A+ LA GA + I + + L GR
Sbjct: 18 GARGQGRSHAVKLAEEGADIILFD--ICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYT 75
Query: 265 -----GKSAALGLAVAGAVA-FG 281
AA+ +A AVA FG
Sbjct: 76 AEVDVRDRAAVSRELANAVAEFG 98
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 36.4 bits (85), Expect = 0.009
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
AARG+G++ A+ LA GA + + + + + L +TV L G
Sbjct: 21 AARGQGRAHAVRLAADGADIIAVD--LCDQIASVPYPLATPEELAATVKLVEDIGSRIVA 78
Query: 265 -----GKSAALGLAVAGAVA-FG 281
+L A+ + G
Sbjct: 79 RQADVRDRESLSAALQAGLDELG 101
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 36.0 bits (84), Expect = 0.010
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
AARG+G++ A+ +A GA + + + + S L TV L A R
Sbjct: 19 AARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPA-SPDDLSETVRLVEAANRRIVA 77
Query: 265 -----GKSAALGLAVAGAVA-FG 281
L V VA G
Sbjct: 78 AVVDTRDFDRLRKVVDDGVAALG 100
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 35.7 bits (83), Expect = 0.015
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
AARG+G+S A+ LA GA + + + + + L TV A GR
Sbjct: 36 AARGQGRSHAITLAREGADIIAID--VCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIA 93
Query: 265 -----GKSAALGLAVAGAVA-FG 281
A+ AV V G
Sbjct: 94 SQVDVRDFDAMQAAVDDGVTQLG 116
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 35.3 bits (82), Expect = 0.019
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
AARG+G++ A+ LA GA + + + S + L+ TV L +GR
Sbjct: 54 AARGQGRTHAVRLAQDGADIVAID--LCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIA 111
Query: 265 -----GKSAALGLAVAGAVA-FG 281
A+L V A+A FG
Sbjct: 112 RQADVRDLASLQAVVDEALAEFG 134
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 34.9 bits (81), Expect = 0.027
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 210 AARGRGKSAALGLAVAGA---VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR-- 264
AARG+G+S A+ LA GA I + I + + L T L R
Sbjct: 19 AARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRI 78
Query: 265 -------GKSAALGLAVAGAVA-FG 281
AL AV V G
Sbjct: 79 VTAEVDVRDYDALKAAVDSGVEQLG 103
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 35.0 bits (81), Expect = 0.030
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAA 261
AARG G + A A GA V + + L + D + L V+ A
Sbjct: 221 AARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDA 273
Score = 28.0 bits (63), Expect = 4.9
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AARG G + A A GA V +
Sbjct: 221 AARGIGATIAEVFARDGATVVAIDVD 246
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 34.4 bits (80), Expect = 0.034
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRG--- 265
ARG G+S A+ LA AGA +A + + + L TV+L GR
Sbjct: 18 GARGMGRSHAVALAEAGADIAICD--RCENSDVVGYPLATADDLAETVALVEKTGRRCIS 75
Query: 266 ------KSAALGLAVAGAVA-FG 281
AAL VA A G
Sbjct: 76 AKVDVKDRAALESFVAEAEDTLG 98
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 33.7 bits (78), Expect = 0.058
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
AARG+G+S A+ LA GA + A + + S + L T L +GR
Sbjct: 23 AARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPA-SPEDLDETARLVEDQGRKALT 81
Query: 265 -----GKSAALGLAVAGAVA-FG 281
AAL VA + FG
Sbjct: 82 RVLDVRDDAALRELVADGMEQFG 104
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 33.3 bits (77), Expect = 0.080
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
RG G + +A AGA VA Y + + + T + G K+
Sbjct: 22 GNRGIGLAFTRAVAAAGANVAVIYRS-------------AADAVEVTEKVGKEFG-VKTK 67
Query: 269 ALGLAVA 275
A V+
Sbjct: 68 AYQCDVS 74
Score = 32.1 bits (74), Expect = 0.19
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
RG G + +A AGA VA Y +
Sbjct: 22 GNRGIGLAFTRAVAAAGANVAVIYRS 47
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 33.3 bits (77), Expect = 0.088
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 25/91 (27%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
++ G G + A A AGA VA Y S L G
Sbjct: 42 SSGGIGWAVAEAYAQAGADVAIWY--------------NSHPADEKAEHLQKTYGVHSKA 87
Query: 265 -----GKSAALGLAVAGAVA-FGYSNIFVTS 289
++ ++ FG ++FV +
Sbjct: 88 YKCNISDPKSVEETISQQEKDFGTIDVFVAN 118
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 33.0 bits (76), Expect = 0.10
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
A+ G G + A A AGA I + E ++ G +A Y
Sbjct: 42 ASYGIGFAIASAYAKAGA------TIVFNDINQELVDRGMAAYKAAGINAHGYV 89
Score = 29.9 bits (68), Expect = 1.1
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR 264
A+ G G + A A AGA I + I+++ + ++ A G
Sbjct: 42 ASYGIGFAIASAYAKAGA------TI-------VFNDINQELVDRGMAAYKAAGI 83
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 32.5 bits (75), Expect = 0.15
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 261 ARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFIFK--GFDALAYQ 312
+G G AA G A GA VA Y++ + + + K G A AY+
Sbjct: 31 PKGMGIEAARGCAEMGAAVAITYAS------RAQGAEENVKELEKTYGIKAKAYK 79
Score = 30.2 bits (69), Expect = 0.77
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 211 ARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
+G G AA G A GA VA Y++ A
Sbjct: 31 PKGMGIEAARGCAEMGAAVAITYASRAQGA 60
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 31.7 bits (73), Expect = 0.24
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 25/89 (28%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
A+ G GK AL A AGA VA L+ A G
Sbjct: 40 ASTGIGKKVALAYAEAGAQVAVAA--------------RHSDALQVVADEIAGVGGKALP 85
Query: 265 -----GKSAALGLAVAGAVA-FGYSNIFV 287
+ + + G +I V
Sbjct: 86 IRCDVTQPDQVRGMLDQMTGELGGIDIAV 114
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 31.9 bits (73), Expect = 0.29
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 267 SAALGLAVAGAVAFG-YSNIF-----------VTSPSPENLNTFFQFIFKGFDALAYQEH 314
+ LG A+ G VA G + ++ +P + ++ ++ F + Y +H
Sbjct: 478 AMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTNKIKAYYDRKYRVFHQM-YHDH 536
Query: 315 LDY-SIVQSTEPEYN 328
+ Y +++Q E ++
Sbjct: 537 MRYQALMQEGEGHHH 551
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 31.7 bits (73), Expect = 0.30
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQ 312
+G G + A GA I + + LN KGF
Sbjct: 22 GTKGIGHAIVEEFAGFGA------VIHTCARNEYELNECLSKWQKKGFQVTGSV 69
Score = 27.9 bits (63), Expect = 4.4
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+G G + A GA + N
Sbjct: 22 GTKGIGHAIVEEFAGFGAVIHTCARN 47
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 31.4 bits (72), Expect = 0.30
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 20/71 (28%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+RG G+ AL L AGA V I G TLR + G G+
Sbjct: 13 ASRGIGRGIALQLCKAGATVY--------------ITGRHLDTLRVVAQEAQSLG-GQ-- 55
Query: 269 ALGLAVAGAVA 279
+ V +
Sbjct: 56 --CVPVVCDSS 64
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 31.3 bits (72), Expect = 0.35
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVS 257
AA G G++ A GA + L + + + + V+
Sbjct: 13 AAHGIGRATLELFAKEGARLVACDIE--EGPLREAAEAVGAHPVVMDVA 59
Score = 29.0 bits (66), Expect = 1.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA G G++ A GA +
Sbjct: 13 AAHGIGRATLELFAKEGARLVACDIE 38
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 31.4 bits (72), Expect = 0.36
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
+++G G + A A AGA V + + T++ A G G +A
Sbjct: 15 SSQGIGLATARLFARAGAKVGLHGRK-------------APANIDETIASMRADG-GDAA 60
Query: 269 ALGLAVA 275
+A
Sbjct: 61 FFAADLA 67
Score = 30.2 bits (69), Expect = 0.83
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+++G G + A A AGA V
Sbjct: 15 SSQGIGLATARLFARAGAKVGLHGRK 40
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 31.3 bits (72), Expect = 0.37
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+RG G++ AL LA G +A Y + + RG A
Sbjct: 9 ASRGIGRAIALRLAEDGFALAIHYGQ-------------NREKAEEVAEEARRRGSPLVA 55
Query: 269 ALGLAVA 275
LG +
Sbjct: 56 VLGANLL 62
Score = 29.8 bits (68), Expect = 0.94
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYS 283
A+RG G++ AL LA G +A Y
Sbjct: 9 ASRGIGRAIALRLAEDGFALAIHYG 33
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 31.0 bits (71), Expect = 0.42
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 27/90 (30%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A +G GK+ AL L G VA ++ T ++ S G G +
Sbjct: 10 AGQGIGKAIALRLVKDGFAVAIAD--------------YNDATAKAVASEINQAG-GHAV 54
Query: 269 ALGL----------AVAGAVA-FGYSNIFV 287
A+ + AV A G ++ V
Sbjct: 55 AVKVDVSDRDQVFAAVEQARKTLGGFDVIV 84
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 30.9 bits (71), Expect = 0.43
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+ G + LA AGA V + E V G +
Sbjct: 21 GAQNIGLACVTALAEAGARVIIAD--------------LDEAMATKAVEDLRMEG-HDVS 65
Query: 269 ALGLAVA 275
++ + V
Sbjct: 66 SVVMDVT 72
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 30.9 bits (71), Expect = 0.45
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A+RG GK+ AL L AG V Y+ A
Sbjct: 9 ASRGIGKAIALSLGKAGCKVLVNYARSAKAA 39
Score = 30.1 bits (69), Expect = 0.83
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A+RG GK+ AL L AG V Y+
Sbjct: 9 ASRGIGKAIALSLGKAGCKVLVNYAR 34
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 30.6 bits (70), Expect = 0.51
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
G +AL L+ AG VA +
Sbjct: 9 VKHFGGMGSALRLSEAGHTVACHDES 34
Score = 30.6 bits (70), Expect = 0.51
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
G +AL L+ AG VA +
Sbjct: 9 VKHFGGMGSALRLSEAGHTVACHDES 34
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 30.5 bits (70), Expect = 0.53
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G GK A+ A AGA V N
Sbjct: 19 AGAGIGKEIAITFATAGASVVVSDIN 44
Score = 30.5 bits (70), Expect = 0.53
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A G GK A+ A AGA V N
Sbjct: 19 AGAGIGKEIAITFATAGASVVVSDIN 44
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 30.5 bits (70), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A+RG G++ A+ LA GA V Y+ KA
Sbjct: 12 ASRGIGRAIAIDLAKQGANVVVNYAGNEQKA 42
Score = 30.1 bits (69), Expect = 0.89
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYS 283
A+RG G++ A+ LA GA V Y+
Sbjct: 12 ASRGIGRAIAIDLAKQGANVVVNYA 36
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 30.6 bits (70), Expect = 0.55
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
+G GK L G V Y +
Sbjct: 15 GTKGLGKQVTEKLLAKGYSVTVTYHSDTTAM 45
Score = 29.4 bits (67), Expect = 1.2
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+G GK L G V Y +
Sbjct: 15 GTKGLGKQVTEKLLAKGYSVTVTYHS 40
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 30.6 bits (70), Expect = 0.55
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A+RG G++ AL LA AGA VA Y++ G A
Sbjct: 36 ASRGIGRAIALELAAAGAKVAVNYASSAGAA 66
Score = 29.8 bits (68), Expect = 1.2
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYS 283
A+RG G++ AL LA AGA VA Y+
Sbjct: 36 ASRGIGRAIALELAAAGAKVAVNYA 60
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 30.5 bits (70), Expect = 0.58
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
++RG GK+ A L GA + S
Sbjct: 13 SSRGLGKAIAWKLGNMGANIVLNGSPASTSL 43
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
++RG GK+ A L GA + S
Sbjct: 13 SSRGLGKAIAWKLGNMGANIVLNGSP 38
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 30.5 bits (70), Expect = 0.63
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A+RG G+S AL LA G VA Y+ KA
Sbjct: 12 ASRGIGRSIALQLAEEGYNVAVNYAGSKEKA 42
Score = 30.1 bits (69), Expect = 0.89
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
A+RG G+S AL LA G VA Y+ S E + I G D+ A Q
Sbjct: 12 ASRGIGRSIALQLAEEGYNVAVNYAG------SKEKAEAVVEEIKAKGVDSFAIQ 60
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 30.6 bits (70), Expect = 0.64
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A G G++ ++ LA GA VA + A + + + +
Sbjct: 15 AGSGIGRAVSVRLAGEGATVAACDLD--RAAAQETVRLLGGPGSKEGPPRGNHAAFQADV 72
Query: 269 ALGLAVAGAVA 279
+ A +
Sbjct: 73 SEARAARCLLE 83
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 30.6 bits (70), Expect = 0.67
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQ 312
++G G + LA GA ++ S + + L+ + KG +
Sbjct: 29 GSKGIGYAIVEELAGLGA------RVYTCSRNEKELDECLEIWREKGLNVEGSV 76
Score = 26.7 bits (60), Expect = 9.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
++G G + LA GA V N
Sbjct: 29 GSKGIGYAIVEELAGLGARVYTCSRN 54
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 30.2 bits (69), Expect = 0.73
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
AA G G++ A A AGA V
Sbjct: 20 AAAGIGRAIAGTFAKAGASVVVTDLK 45
Score = 30.2 bits (69), Expect = 0.73
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA G G++ A A AGA V
Sbjct: 20 AAAGIGRAIAGTFAKAGASVVVTDLK 45
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 30.2 bits (69), Expect = 0.76
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
++ G GKS A+ A A V Y + +A
Sbjct: 15 SSTGLGKSMAIRFATEKAKVVVNYRSKEDEA 45
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
++ G GKS A+ A A V Y +
Sbjct: 15 SSTGLGKSMAIRFATEKAKVVVNYRS 40
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 30.1 bits (69), Expect = 0.77
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 13/74 (17%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
ARG G++ A A GA VA GK + + I + +
Sbjct: 14 GARGIGRAIAQAFAREGALVALCDLRPEGKEV---AEAIGGAFFQVDLE--------DER 62
Query: 269 ALGLAVAGAVA-FG 281
V A G
Sbjct: 63 ERVRFVEEAAYALG 76
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 30.2 bits (69), Expect = 0.82
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ G G++ A LA GA V N
Sbjct: 17 SGGGIGQAYAEALAREGAAVVVADIN 42
Score = 30.2 bits (69), Expect = 0.82
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ G G++ A LA GA V N
Sbjct: 17 SGGGIGQAYAEALAREGAAVVVADIN 42
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 30.2 bits (69), Expect = 0.91
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
++RG GK+AA+ LA G + Y+ A
Sbjct: 12 SSRGVGKAAAIRLAENGYNIVINYARSKKAA 42
Score = 29.4 bits (67), Expect = 1.4
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
++RG GK+AA+ LA G + Y+
Sbjct: 12 SSRGVGKAAAIRLAENGYNIVINYAR 37
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 30.1 bits (68), Expect = 0.92
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 16/103 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
AA+ G+S A GL G V Y S + + AR +
Sbjct: 54 AAKRLGRSIAEGLHAEGYAVCLHYHR-------------SAAEANALSATLNARRPNSAI 100
Query: 269 ALG--LAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDAL 309
+ L+ ++ + +
Sbjct: 101 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRC 143
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 30.2 bits (69), Expect = 0.93
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
A RG G+ A LA + + ++ S + ++ ++ I G+++ Y
Sbjct: 52 AGRGIGREIAKMLAKSVS------HVICISRTQKSCDSVVDEIKSFGYESSGYA 99
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVS-LTAARGRGKSA 268
A RG G+ A LA + + ++K+ S V + +
Sbjct: 52 AGRGIGREIAKMLAKSVSHVICI-------------SRTQKSCDSVVDEIKSFGYESSGY 98
Query: 269 ALGLAVAGAVA 279
A ++ ++
Sbjct: 99 AGDVSKKEEIS 109
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.43A
{Pyrococcus furiosus dsm 3638}
Length = 369
Score = 30.1 bits (67), Expect = 0.98
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 20 PFELFVASTNIRYTYYSETHKILGNTYGMCVLQDFEALTPNLLARTIETVEGGGVIVLLL 79
P ++ + R ++S +I TP++L R ++ + ++
Sbjct: 249 PVDVTFIDKDDRVRFFSPGERIFTR-------------TPSVLGRPVQLCHPPKSVYVVN 295
Query: 80 RTLSSLKQ----LYTMSMDIHERY 99
+ L + K+ T + + E+Y
Sbjct: 296 KILKAFKEGRKKEATFWLRLREKY 319
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 29.8 bits (68), Expect = 0.99
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A++G G V +I A
Sbjct: 36 ASQGIGAGLVRAYRDRNYRVVATSRSIKPSA 66
Score = 29.1 bits (66), Expect = 1.7
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A++G G V +
Sbjct: 36 ASQGIGAGLVRAYRDRNYRVVATSRS 61
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G G++ A AV GA +A
Sbjct: 15 GANGIGRAIAERFAVEGADIAIADLV 40
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A G G++ A AV GA +A
Sbjct: 15 GANGIGRAIAERFAVEGADIAIADLV 40
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
AA+ G++ A+ L G V Y N A
Sbjct: 31 AAKRIGRAIAVKLHQTGYRVVIHYHNSAEAA 61
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA+ G++ A+ L G V Y N
Sbjct: 31 AAKRIGRAIAVKLHQTGYRVVIHYHN 56
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 30.0 bits (68), Expect = 1.0
Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 16/103 (15%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
AA+ G+S A GL G V Y S + + AR +
Sbjct: 17 AAKRLGRSIAEGLHAEGYAVCLHYHR-------------SAAEANALSATLNARRPNSAI 63
Query: 269 ALG--LAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDAL 309
+ L+ ++ + +
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRC 106
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
AA G G++A A GA +
Sbjct: 14 AASGIGRAALDLFAREGASLVAVDRE 39
Score = 29.8 bits (68), Expect = 1.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA G G++A A GA +
Sbjct: 14 AASGIGRAALDLFAREGASLVAVDRE 39
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 29.8 bits (68), Expect = 1.2
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQ 312
+RG G LA GA +++ S + + LN KGF A
Sbjct: 17 GSRGIGYGIVEELASLGA------SVYTCSRNQKELNDCLTQWRSKGFKVEASV 64
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 29.8 bits (68), Expect = 1.2
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 30/109 (27%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+RG G++ A LA GA VA Y N ++ TV + G G +
Sbjct: 15 ASRGIGRAIAKRLANDGALVAIHYGN-------------RKEEAEETVYEIQSNG-GSAF 60
Query: 269 ALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAYQEHLDY 317
++G + S + + + D
Sbjct: 61 SIGANLE---------------SLHGVEALYSSLDNELQNRTGSTKFDI 94
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 29.8 bits (68), Expect = 1.2
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A G +A L G V ++ A
Sbjct: 9 ARHFAGPAAVEALTQDGYTVVCHDASFADAA 39
Score = 29.0 bits (66), Expect = 1.8
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A G +A L G V ++
Sbjct: 9 ARHFAGPAAVEALTQDGYTVVCHDAS 34
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/77 (18%), Positives = 18/77 (23%), Gaps = 21/77 (27%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
G G+ A L+ G V I G L + R
Sbjct: 41 GGTGVGRGIAQALSAEGYSVV--------------ITGRRPDVLDAAAGEIGGRTGNIVR 86
Query: 269 ALGL------AVAGAVA 279
A+ VA A
Sbjct: 87 AVVCDVGDPDQVAALFA 103
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 29.4 bits (67), Expect = 1.3
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
G GK L AG V F +
Sbjct: 10 GGHGIGKQICLDFLEAGDKVCFIDID 35
Score = 29.4 bits (67), Expect = 1.3
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
G GK L AG V F +
Sbjct: 10 GGHGIGKQICLDFLEAGDKVCFIDID 35
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 29.5 bits (67), Expect = 1.4
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQ 312
A G G A L G +FV + E L T + + G +A
Sbjct: 30 ATSGIGLEIARRLGKEGL------RVFVCARGEEGLRTTLKELREAGVEADGRT 77
Score = 28.4 bits (64), Expect = 3.4
Identities = 7/26 (26%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G G A L G V
Sbjct: 30 ATSGIGLEIARRLGKEGLRVFVCARG 55
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 29.5 bits (67), Expect = 1.4
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A+RG G + A L GA V +
Sbjct: 37 ASRGIGAAIARKLGSLGARVVLTARD 62
Score = 29.5 bits (67), Expect = 1.4
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A+RG G + A L GA V +
Sbjct: 37 ASRGIGAAIARKLGSLGARVVLTARD 62
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+G G+ A A AGA VA +
Sbjct: 18 GTKGIGRGIATVFARAGANVAVAGRS 43
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+G G+ A A AGA VA +
Sbjct: 18 GTKGIGRGIATVFARAGANVAVAGRS 43
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 29.4 bits (67), Expect = 1.5
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 22/86 (25%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRG--- 265
++G G + A L AGA VA + ++ V+ G
Sbjct: 20 GSKGIGAAIARALDKAGATVAIAD--------------LDVMAAQAVVAGLENGGFAVEV 65
Query: 266 ---KSAALGLAVAGAVA-FGYSNIFV 287
K A++ A+ A+ G ++
Sbjct: 66 DVTKRASVDAAMQKAIDALGGFDLLC 91
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 29.4 bits (67), Expect = 1.5
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A G G + A + GA V E+ L T A G G+
Sbjct: 31 AGTGIGSTTARRALLEGADVVISD--------------YHERRLGETRDQLADLGLGRVE 76
Query: 269 ALGLAVA 275
A+ V
Sbjct: 77 AVVCDVT 83
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
+G G+ A A AGA VA + +
Sbjct: 49 GTKGIGRGIATVFARAGANVAVAARSPRELS 79
Score = 29.1 bits (66), Expect = 1.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+G G+ A A AGA VA +
Sbjct: 49 GTKGIGRGIATVFARAGANVAVAARS 74
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 29.4 bits (67), Expect = 1.6
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR----- 264
+ARG G + A GLA AGA + ++ I L +V +G
Sbjct: 17 SARGLGFAYAEGLAAAGA------RV-------ILNDIRATLLAESVDTLTRKGYDAHGV 63
Query: 265 ----GKSAALGLAVAGAVA-FGYSNIFV 287
A+ A + A + +I +
Sbjct: 64 AFDVTDELAIEAAFSKLDAEGIHVDILI 91
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 24/89 (26%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
+RG G A GLA AG V N E+ + LT G
Sbjct: 29 GSRGLGFGIAQGLAEAGCSVVVASRN-------------LEEASEAAQKLTEKYGVETMA 75
Query: 265 -----GKSAALGLAVAGAVA-FGYSNIFV 287
+ + FG + V
Sbjct: 76 FRCDVSNYEEVKKLLEAVKEKFGKLDTVV 104
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
RG G A LA +G +A + + ++ + G +
Sbjct: 37 GRRGIGLGIARALAASGFDIAITGIG-------------DAEGVAPVIAELSGLG-ARVI 82
Query: 269 ALGLAVA 275
L +A
Sbjct: 83 FLRADLA 89
Score = 28.7 bits (65), Expect = 2.6
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
RG G A LA +G +A
Sbjct: 37 GRRGIGLGIARALAASGFDIAITGIG 62
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 29.4 bits (67), Expect = 1.6
Identities = 17/66 (25%), Positives = 18/66 (27%), Gaps = 15/66 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
G GK A GL AGA V I G + L V A G A
Sbjct: 19 GGSGIGKGVAAGLVAAGASVM--------------IVGRNPDKLAGAVQELEALGANGGA 64
Query: 269 ALGLAV 274
Sbjct: 65 IRYEPT 70
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 29.0 bits (66), Expect = 1.7
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+ G G+ AA+ A GA V + G +E+ LR S +
Sbjct: 20 ASDGIGREAAMTYARYGATVI--------------LLGRNEEKLRQVASHINEETGRQPQ 65
Query: 269 ALGLAVAGA 277
L +
Sbjct: 66 WFILDLLTC 74
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 29.0 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
AA+G GK+ A LA GA V N
Sbjct: 14 AAQGIGKAIAARLAADGATVIVSDIN 39
Score = 29.0 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA+G GK+ A LA GA V N
Sbjct: 14 AAQGIGKAIAARLAADGATVIVSDIN 39
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 29.0 bits (66), Expect = 1.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A +G G + AL AGA V +
Sbjct: 15 AGKGIGYATALAFVEAGAKVTGFDQAFTQEQ 45
Score = 29.0 bits (66), Expect = 2.1
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSNI 285
A +G G + AL AGA V
Sbjct: 15 AGKGIGYATALAFVEAGAKVTGFDQAF 41
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 29.0 bits (66), Expect = 1.8
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDALAYQEHLDYSI 319
+RG G++ A L G + + S +PE + A+ L+
Sbjct: 10 GSRGIGRAIAEALVARGY------RVAIASRNPEEAA-------QSLGAVPLPTDLEKDD 56
Query: 320 VQS 322
+
Sbjct: 57 PKG 59
Score = 28.6 bits (65), Expect = 2.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+RG G++ A L G VA N
Sbjct: 10 GSRGIGRAIAEALVARGYRVAIASRN 35
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 29.1 bits (66), Expect = 1.9
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENL 295
+RG G+ A GL AGA +F+ + E
Sbjct: 37 GSRGIGQMIAQGLLEAGA------RVFICARDAEAC 66
Score = 28.3 bits (64), Expect = 3.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 210 AARGRGKSAALGLAVAGA 227
+RG G+ A GL AGA
Sbjct: 37 GSRGIGQMIAQGLLEAGA 54
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 29.0 bits (66), Expect = 2.0
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
+ G GK A A GA + +T + E L I + L Q
Sbjct: 14 GSSGMGKGMATRFAKEGA------RVVITGRTKEKLEEAKLEIEQFPGQILTVQ 61
Score = 26.7 bits (60), Expect = 9.6
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ G GK A A GA V
Sbjct: 14 GSSGMGKGMATRFAKEGARVVITGRT 39
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 29.0 bits (66), Expect = 2.1
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQEH 314
+ G G + A LA GA ++ V+S EN++ + +G H
Sbjct: 22 STDGIGLAIARRLAQDGA------HVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 71
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 29.0 bits (66), Expect = 2.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
+ RG G++ A LA AG+ V ++
Sbjct: 15 STRGIGRAIAEKLASAGSTVIITGTSGERAK 45
Score = 28.2 bits (64), Expect = 3.6
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ RG G++ A LA AG+ V ++
Sbjct: 15 STRGIGRAIAEKLASAGSTVIITGTS 40
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 28.7 bits (65), Expect = 2.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
A R G++ A+ A GA V Y+ A
Sbjct: 16 AGRDIGRACAIRFAQEGANVVLTYNGAAEGA 46
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 28.6 bits (65), Expect = 2.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ARG G++ A GA VA +
Sbjct: 16 SARGIGRAFAEAYVREGATVAIADID 41
Score = 28.6 bits (65), Expect = 2.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ARG G++ A GA VA +
Sbjct: 16 SARGIGRAFAEAYVREGATVAIADID 41
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 28.6 bits (65), Expect = 2.3
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFI-FKGFDALAYQ 312
G G S L G V G P+ + + GFD A +
Sbjct: 21 GMGGIGTSICQRLHKDGFRVVAGC------GPNSPRRVKWLEDQKALGFDFYASE 69
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/31 (22%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
G G S L G V G +
Sbjct: 21 GMGGIGTSICQRLHKDGFRVVAGCGPNSPRR 51
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 28.7 bits (65), Expect = 2.3
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 23/87 (26%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR----- 264
A G G++ A G A AGA ++ G ++ ++ A G
Sbjct: 39 AGSGIGRAIAHGYARAGA------HV-------LAWGRTDG-VKEVADEIADGGGSAEAV 84
Query: 265 ----GKSAALGLAVAGAVAFGYSNIFV 287
A ++ V
Sbjct: 85 VADLADLEGAANVAEELAATRRVDVLV 111
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 28.6 bits (65), Expect = 2.4
Identities = 12/82 (14%), Positives = 17/82 (20%), Gaps = 26/82 (31%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRG--- 265
A G G A +GA + + L
Sbjct: 19 AGSGIGLEICRAFAASGARLI--------------LIDREAAALDRAAQ--ELGAAVAAR 62
Query: 266 ------KSAALGLAVAGAVAFG 281
+ A+ A A A A
Sbjct: 63 IVADVTDAEAMTAAAAEAEAVA 84
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 29.0 bits (65), Expect = 2.4
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
A+RG GK+ AL A GA + + T + I G AL
Sbjct: 53 ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCI 107
Score = 27.5 bits (61), Expect = 7.4
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+RG GK+ AL A GA + L T+ + A G GK+
Sbjct: 53 ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKL-------LGTIYTAAEEIEAVG-GKAL 104
Query: 269 ALGLAVA 275
+ V
Sbjct: 105 PCIVDVR 111
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 28.7 bits (65), Expect = 2.7
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 25/90 (27%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+G G+ + LA G +A E+ T+ L A K+
Sbjct: 10 GAQGIGRGISEKLAADGFDIAVADLP------------QQEEQAAETIKLIEAAD-QKAV 56
Query: 269 ALGL----------AVAGAVA-FGYSNIFV 287
+GL A+ A G ++ V
Sbjct: 57 FVGLDVTDKANFDSAIDEAAEKLGGFDVLV 86
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 28.7 bits (65), Expect = 2.7
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTV-SLTAARGRGKS 267
AR G S A+ L G V Y + SE + V L AAR G +
Sbjct: 19 GARRIGHSIAVRLHQQGFRVVVHYRH-------------SEGAAQRLVAELNAARA-GSA 64
Query: 268 AALG--LAVAGAVAFGYSNIF 286
L+++ ++ +I
Sbjct: 65 VLCKGDLSLSSSLLDCCEDII 85
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 25/83 (30%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
G + A A GA + + + + L GR
Sbjct: 19 VGPALGTTLARRCAEQGADLV--------------LAARTVERLEDVAKQVTDTGRRALS 64
Query: 265 -----GKSAALGLAVAGAVA-FG 281
A + V + +G
Sbjct: 65 VGTDITDDAQVAHLVDETMKAYG 87
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 28.7 bits (65), Expect = 2.9
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVS-LTAARGRGKSA 268
A+RG G++ AL LA GA+ G +E + A G+ A
Sbjct: 36 ASRGIGRAIALELARRGAMVIGT-------------ATTEAGAEGIGAAFKQAGLEGRGA 82
Query: 269 ALGLAVAGAVA 279
L + A AV
Sbjct: 83 VLNVNDATAVD 93
Score = 27.5 bits (62), Expect = 6.4
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFK-GFDALAYQ 312
A+RG G++ AL LA GA + T+ + + G +
Sbjct: 36 ASRGIGRAIALELARRGA------MVIGTATTEAGAEGIGAAFKQAGLEGRGAV 83
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 28.3 bits (64), Expect = 3.0
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKA 239
G G + + L AG VA +S
Sbjct: 33 GMGGLGAAISRRLHDAGMAVAVSHSERNDHV 63
Score = 27.5 bits (62), Expect = 5.4
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSNIFVTSPSPENLNTFFQFI-FKGFDALAYQ 312
G G + + L AG VA + S ++++T+ G D AY
Sbjct: 33 GMGGLGAAISRRLHDAGMAVAVSH------SERNDHVSTWLMHERDAGRDFKAYA 81
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 28.4 bits (64), Expect = 3.0
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 18/83 (21%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGR---- 264
+RG G + A +A GA VA + L T+ + G
Sbjct: 17 GSRGIGLAIAKRVAADGANVALVAKSAEPHPKL-------PGTIYTAAKEIEEAGGQALP 69
Query: 265 -----GKSAALGLAVAGAV-AFG 281
A+ AVA V FG
Sbjct: 70 IVGDIRDGDAVAAAVAKTVEQFG 92
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 28.3 bits (64), Expect = 3.3
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 27/84 (32%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A G G++ AL LA G V G + + G G++
Sbjct: 36 AGSGIGRATALALAADGVTVG--------------ALGRTRTEVEEVADEIVGAG-GQAI 80
Query: 269 ALGL----------AVAGAVA-FG 281
AL AV V FG
Sbjct: 81 ALEADVSDELQMRNAVRDLVLKFG 104
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 28.3 bits (64), Expect = 3.4
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
AARG G +AA A GA V
Sbjct: 22 AARGIGAAAARAYAAHGASVVLLGRT 47
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFI------FKGFDALAYQ 312
A G GK+ L G+ N+ + S E L + + K + Q
Sbjct: 26 GATGIGKAIVKELLELGS------NVVIASRKLERLKSAADELQANLPPTKQARVIPIQ 78
Score = 26.9 bits (60), Expect = 9.7
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G GK+ L G+ V
Sbjct: 26 GATGIGKAIVKELLELGSNVVIASRK 51
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 28.0 bits (63), Expect = 3.8
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
A+RG G + AL A GA VA + L T+ S + A G G+
Sbjct: 14 ASRGIGLAIALRAARDGANVAIAAKSAVANPKL-------PGTIHSAAAAVNAAG-GQGL 65
Query: 269 ALGL----------AVAGAVA-FGYSNIFVTSPSPENLNTFFQFIFKGFDA 308
AL AVA V FG +I V + S L K FD
Sbjct: 66 ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDL 116
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 27.9 bits (63), Expect = 3.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 246 GISEKTLRSTVSL-T-AARGRGKSAALGLAVAGA-VAFGYSN 284
G+ ++ S L T RG G + A A AG VA Y +
Sbjct: 13 GLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS 54
Score = 27.1 bits (61), Expect = 7.0
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
RG G + A A AG VA Y +
Sbjct: 29 GNRGIGLAIARAFADAGDKVAITYRS 54
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A RG G+ A+ L G V Y+N
Sbjct: 37 AGRGIGREMAMELGRRGCKVIVNYAN 62
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A RG G+ A+ L G V Y+N
Sbjct: 37 AGRGIGREMAMELGRRGCKVIVNYAN 62
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 27.9 bits (63), Expect = 4.0
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
++ G G++ A+ A GA V + + L T + G +
Sbjct: 14 SSNGIGRTTAILFAQEGANVTITGRS--------------SERLEETRQIILKSGVSEKQ 59
Query: 269 ALGLAV 274
+
Sbjct: 60 VNSVVA 65
Score = 27.9 bits (63), Expect = 4.5
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
++ G G++ A+ A GA V +
Sbjct: 14 SSNGIGRTTAILFAQEGANVTITGRS 39
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 28.0 bits (63), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
AA+G G++ A L + GA VA N
Sbjct: 15 AAQGIGRAFAEALLLKGAKVALVDWN 40
Score = 28.0 bits (63), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
AA+G G++ A L + GA VA N
Sbjct: 15 AAQGIGRAFAEALLLKGAKVALVDWN 40
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ RG G + A+ L GA V Y+N
Sbjct: 26 SGRGIGAAVAVHLGRLGAKVVVNYAN 51
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ RG G + A+ L GA V Y+N
Sbjct: 26 SGRGIGAAVAVHLGRLGAKVVVNYAN 51
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A RG G+ A+ L GA V Y +
Sbjct: 29 AGRGIGRGIAIELGRRGASVVVNYGS 54
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A RG G+ A+ L GA V Y +
Sbjct: 29 AGRGIGRGIAIELGRRGASVVVNYGS 54
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 28.0 bits (63), Expect = 4.3
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 17/71 (23%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
++ G G+SAA+ A GA V N E L T G A
Sbjct: 34 SSNGIGRSAAVIFAKEGAQVTITGRN--------------EDRLEETKQQILKAGV--PA 77
Query: 269 ALGLAVAGAVA 279
AV V
Sbjct: 78 EKINAVVADVT 88
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A+RG G + A LA G V Y+
Sbjct: 35 ASRGIGAAIAARLASDGFTVVINYAG 60
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A+RG G + A LA G V Y+
Sbjct: 35 ASRGIGAAIAARLASDGFTVVINYAG 60
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.0 bits (63), Expect = 4.5
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTV-SLTAARGRGKSA 268
+ G G + A LA G +G K + + V L AA +
Sbjct: 32 VSSGIGLAVARTLAARGIAVYGC-------------ARDAKNVSAAVDGLRAAGHDVDGS 78
Query: 269 ALGLAVAGAVA 279
+ + V
Sbjct: 79 SCDVTSTDEVH 89
Score = 26.8 bits (60), Expect = 8.9
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 260 AARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIF-KGFDALAYQ 312
+ G G + A LA G ++ + +N++ + G D
Sbjct: 32 VSSGIGLAVARTLAARGI------AVYGCARDAKNVSAAVDGLRAAGHDVDGSS 79
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo
sapiens}
Length = 460
Score = 27.9 bits (61), Expect = 5.4
Identities = 7/56 (12%), Positives = 12/56 (21%), Gaps = 4/56 (7%)
Query: 253 RSTVSLTAARGRGKSAALGLAVAGAVAFGYSNIFVTSPSPENLNTFFQFIFKGFDA 308
R+ A R + A Y + + +GF
Sbjct: 16 RAVPPTPAYELRAATPAPAEGQCADFVSFYGGL----AETAQRAELLGRLARGFGV 67
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A++ G AL L G V Y
Sbjct: 35 ASQRVGLHCALRLLEHGHRVIISYRT 60
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A++ G AL L G V Y
Sbjct: 35 ASQRVGLHCALRLLEHGHRVIISYRT 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 28.1 bits (63), Expect = 5.6
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 218 AALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSAALGLAVAGA 277
+ G + +S IF K + F +G +T R +L + L L +
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL------LFLILGIISF 763
Query: 278 VAFGYSNIF 286
+ F
Sbjct: 764 ITFFLQGFT 772
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 27.5 bits (62), Expect = 5.9
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ G A A+ + Y
Sbjct: 19 GIKNLGALTAKTFALESVNLVLHYHQ 44
Score = 27.5 bits (62), Expect = 5.9
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ G A A+ + Y
Sbjct: 19 GIKNLGALTAKTFALESVNLVLHYHQ 44
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 27.5 bits (62), Expect = 6.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+ G G + L AGA VAF +
Sbjct: 16 GSSGIGLATVELLLEAGAAVAFCARD 41
Score = 27.5 bits (62), Expect = 6.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+ G G + L AGA VAF +
Sbjct: 16 GSSGIGLATVELLLEAGAAVAFCARD 41
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 AARGRGKSAALGLAVAGA 227
A +G G A A AGA
Sbjct: 28 ATKGIGADIARAFAAAGA 45
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 260 AARGRGKSAALGLAVAGA 277
A +G G A A AGA
Sbjct: 28 ATKGIGADIARAFAAAGA 45
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.1 bits (61), Expect = 6.7
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
RG G + A LA G VA +
Sbjct: 23 GNRGIGLAIAQRLAADGHKVAVTHRG 48
Score = 27.1 bits (61), Expect = 6.7
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
RG G + A LA G VA +
Sbjct: 23 GNRGIGLAIAQRLAADGHKVAVTHRG 48
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 27.1 bits (61), Expect = 6.7
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G + AL LA G +A N
Sbjct: 15 AGGNIGLATALRLAEEGTAIALLDMN 40
Score = 27.1 bits (61), Expect = 6.7
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A G + AL LA G +A N
Sbjct: 15 AGGNIGLATALRLAEEGTAIALLDMN 40
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 27.1 bits (61), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
+RG G + A LA+ GA VA Y N
Sbjct: 39 GSRGIGAAIAKRLALEGAAVALTYVN 64
Score = 27.1 bits (61), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
+RG G + A LA+ GA VA Y N
Sbjct: 39 GSRGIGAAIAKRLALEGAAVALTYVN 64
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 27.1 bits (61), Expect = 7.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 210 AARGRGKSAALGLAVAGA 227
A +G G+ L +GA
Sbjct: 15 AGKGIGRDTVKALHASGA 32
Score = 27.1 bits (61), Expect = 7.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 260 AARGRGKSAALGLAVAGA 277
A +G G+ L +GA
Sbjct: 15 AGKGIGRDTVKALHASGA 32
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 27.1 bits (61), Expect = 7.7
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 210 AARGRGKSAALGLAVAGA 227
A +G G+ L GA
Sbjct: 15 AGKGIGRGTVQALHATGA 32
Score = 27.1 bits (61), Expect = 7.7
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 260 AARGRGKSAALGLAVAGA 277
A +G G+ L GA
Sbjct: 15 AGKGIGRGTVQALHATGA 32
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.1 bits (61), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A+RG GK+ A LA GA V ++
Sbjct: 17 ASRGIGKAIAELLAERGAKVIGTATS 42
Score = 27.1 bits (61), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A+RG GK+ A LA GA V ++
Sbjct: 17 ASRGIGKAIAELLAERGAKVIGTATS 42
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 27.1 bits (61), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A+ G G + A L G+ V SN
Sbjct: 22 ASSGIGSAIARLLHKLGSKVIISGSN 47
Score = 27.1 bits (61), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A+ G G + A L G+ V SN
Sbjct: 22 ASSGIGSAIARLLHKLGSKVIISGSN 47
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 27.1 bits (61), Expect = 8.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSN 234
A G G++ A GA V +
Sbjct: 35 ATGGIGEAIARCFHAQGAIVGLHGTR 60
Score = 27.1 bits (61), Expect = 8.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYSN 284
A G G++ A GA V +
Sbjct: 35 ATGGIGEAIARCFHAQGAIVGLHGTR 60
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 27.1 bits (61), Expect = 8.4
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYS 233
+RG G + A G V Y+
Sbjct: 34 GSRGIGAAVCRLAARQGWRVGVNYA 58
Score = 27.1 bits (61), Expect = 8.4
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 260 AARGRGKSAALGLAVAGA-VAFGYS 283
+RG G + A G V Y+
Sbjct: 34 GSRGIGAAVCRLAARQGWRVGVNYA 58
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 26.8 bits (60), Expect = 9.1
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFI 244
A+ G G++ A G+ V + G+A I
Sbjct: 16 ASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHI 51
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 26.8 bits (60), Expect = 9.4
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 210 AARGRGKSAALGLAVAGA-VAFGYSNIFGKALLKFIDGISEKTLRSTVSLTAARGRGKSA 268
++ G G++ A+ A GA V I G + L T A G +
Sbjct: 14 SSNGIGRATAVLFAREGAKVT--------------ITGRHAERLEETRQQILAAGVSEQN 59
Query: 269 ALGLAV 274
+
Sbjct: 60 VNSVVA 65
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger,
ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo
sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A
1ldk_A 1ldk_B 3rtr_A
Length = 760
Score = 27.1 bits (59), Expect = 9.4
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 30 IRYTYYSETHKILGNTYGMCVLQDF---EALTPNLLARTIETVEGGGVIVLLLRTLSSL- 85
+ + + + +T+ M +L + +A T L + + +L + L L
Sbjct: 574 LVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMD-----ILAQVLQILL 628
Query: 86 -KQLYTMSMDIHERYRTEAHSDVVCRFNERF 115
+L + + E D + + +
Sbjct: 629 KSKLLVLEDENANVDEVELKPDTLIKLYLGY 659
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 26.7 bits (60), Expect = 10.0
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 210 AARGRGKSAALGLAVAGAVAFGYSNIFGKALLKFIDGISEKTLRSTVS-LTAARGRGKSA 268
A+RG G A LA GA G S+ + + + + +
Sbjct: 13 ASRGIGFEVAHALASKGATVVGT-------------ATSQASAEKFENSMKEKGFKARGL 59
Query: 269 ALGLAVAGAVA 279
L ++ ++
Sbjct: 60 VLNISDIESIQ 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.368
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,759,042
Number of extensions: 285555
Number of successful extensions: 928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 211
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)