BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18106
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 52/70 (74%)
Query: 7 FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGS 66
F+ K++++Y L +L ++ LE+ GLG+SLAG+KDR++M++FV G+NP G A+ G
Sbjct: 10 FTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 69
Query: 67 VLVGDELLEI 76
+ +GDELLEI
Sbjct: 70 MRIGDELLEI 79
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D V LER G G SL G ++ M ++V L G A ++G + +GDE+LEI
Sbjct: 24 DFYTVELERGAKGFGFSLRGGRE-YNMDLYVLRLAEDGPAERSGKMRIGDEILEI 77
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 63 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 115
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD++L +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD++L +
Sbjct: 104 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD++L +
Sbjct: 101 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 155
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 57
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 58
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELL 74
+TLER ++GLG S+AG D + ++F+ + P G+A++ G + V D +L
Sbjct: 16 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 68
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D V +E+ G G S+ G ++ KM ++V L G A + G + VGD+++EI
Sbjct: 11 DYFTVDMEKGAKGFGFSIRGGRE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+TLER ++GLG S+AG D + +F+ + P G+A++ G + V D +L +
Sbjct: 13 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRV 67
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 14 KKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
KK +GP V+ L+ H GLGIS+ G K+ + + + ++P A + G + VGD +
Sbjct: 2 KKSQGVGPIRKVLLLKEDHEGLGISITGGKEHG-VPILISEIHPGQPADRCGGLHVGDAI 60
Query: 74 LEI 76
L +
Sbjct: 61 LAV 63
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ + + +GLG+S+ G KD A+ + + G+A++ G + GD++LE+
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV 71
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGD 71
GS G +L V LE+ GLGIS+ G K+ +FV + G+A + G + V D
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 72 ELLEI 76
+++E+
Sbjct: 64 QIVEV 68
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 25 VVTLERSHTGLGISLAGHKDRTK-----MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L RS GLG S+AG K T +FV + G+A + G++ VGD +L I
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GP V+ L+ H GLGIS+ G K+ + + + ++P A + G + VGD +L +
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHG-VPILISEIHPGQPADRCGGLHVGDAILAV 56
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D+++E+
Sbjct: 80 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 139
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+TLER ++GLG S+AG D + ++F+ + G+A++ G + V D +L +
Sbjct: 15 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRV 69
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+TLER ++GLG S+AG D + ++F+ + G+A++ G + V D +L +
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRV 59
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + + TGLG+S+ G D A+ + + G+A K G + GD++LE+
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEV 58
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D+++E+
Sbjct: 4 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 63
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKM-----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + +T+ R GLGIS+AG K T +F+ ++ G A++ G V VGD+LLE+
Sbjct: 15 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKM-----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ +T+ R GLGIS+AG K T +F+ ++ G A++ G V VGD+LLE+
Sbjct: 5 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V+ L+ H GLGIS+ G K+ + + + ++P A + G + VGD +L +
Sbjct: 31 VLLLKEDHEGLGISITGGKEHG-VPILISEIHPGQPADRCGGLHVGDAILAV 81
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LER ++GLG S+AG D + +F+ + P G+A+ G + V D +L +
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GLG SLAG D + V + P+G AS+ G++ G+E+L I
Sbjct: 28 GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
>pdb|1IZ1|A Chain A, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
pdb|1IZ1|B Chain B, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
pdb|1IZ1|P Chain P, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
pdb|1IZ1|Q Chain Q, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
Length = 294
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGH 42
S + ++ +L DL VV LERSH G+ ++ AGH
Sbjct: 28 SQPPITRQMQALEADLGVVLLERSHRGIELTAAGH 62
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ VTL++ + G+G+S+ K + K+ ++V + G+A G + GD+LL +
Sbjct: 4 PEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|1IXC|A Chain A, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
pdb|1IXC|B Chain B, Crystal Structure Of Cbnr, A Lysr Family Transcriptional
Regulator
Length = 294
Score = 32.3 bits (72), Expect = 0.071, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGH 42
S + ++ +L DL VV LERSH G+ ++ AGH
Sbjct: 28 SQPPITRQXQALEADLGVVLLERSHRGIELTAAGH 62
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ VTL++ + G+G+S+ K + K+ ++V + G+A G + GD+LL +
Sbjct: 4 PEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ VTL++ G+G+S+ K + K+ ++V + G+A G + GD+LL +
Sbjct: 10 PEIITVTLKK-QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ VTL++ + G+G+S+ K + K+ ++V + G+A G + GD+LL +
Sbjct: 10 PEIITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D L+E+
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D L+E+
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D L+E+
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 21 PDLVVVTLERSH-------------TGLGISLAGHKDR---TKMAVFVCGLNPSGSASKT 64
PD ++LE S GLG+SL G+K R T + +F+ + G+A K
Sbjct: 12 PDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 71
Query: 65 GSVLVGDELLEI 76
G + + D+L+ +
Sbjct: 72 GRLRMNDQLIAV 83
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 24 VVVTLERSHTGLGISLAG--HKDRTK-MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V VTL + G + G H DR K V + + P G A + G++ GD LL +
Sbjct: 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VV L ++ GLG ++ G K++ +++ + P G A + G + GD+LL +
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNS-PIYISRVIPGGVADRHGGLKRGDQLLSV 58
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 24 VVVTLERSHTGLGISLAG--HKDRTK-MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V VTL + G + G H DR K V + + P G A + G++ GD LL +
Sbjct: 108 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 35 LGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
LGIS+ G +D T +F+ ++P+G+A + G + VG LLE+
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 33 TGLGISLAGHKDRTKMA---VFVCGLNPSGSASKTGSVLVGDELLEI 76
GLG+S+ G++ + A +FV + G+ASK G + V D+L+ +
Sbjct: 18 AGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAV 64
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 33 TGLGISLAGHKDRTKMA---VFVCGLNPSGSASKTGSVLVGDELLEI 76
GLG+S+ G++ + A +FV + G+ASK G + V D+L+ +
Sbjct: 21 AGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAV 67
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 21 PDLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
P +TLER GLG S+ G H D + ++V + G+AS+ G + GD+++
Sbjct: 24 PQCKSITLERGPDGLGFSIVGGYGSPHGD---LPIYVKTVFAKGAASEDGRLKRGDQIIA 80
Query: 76 I 76
+
Sbjct: 81 V 81
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ L ++ LG ++ KD A+ V + G+A ++G + VGDEL E+
Sbjct: 7 IIRLVKNREPLGATI--KKDEQTGAIIVARIXRGGAADRSGLIHVGDELREV 56
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM---AVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L ++ GLGI++AG+ K+ +FV + S + G + +GD+++ +
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 31 SHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
S GLGI + G K+ ++ ++ + P GSA +TG ++ G ++LE
Sbjct: 28 SGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLE 76
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S G + V L+R LGI+++G ++ + + L G A +TG++ +GD +L I
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEEPFD-PIIISSLTKGGLAERTGAIHIGDRILAI 58
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
Length = 120
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 35 LGISLAGHKDRT--KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
LGIS+AG + +F+ ++P+G A++T + VGD ++ I
Sbjct: 38 LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMA-VFVCGLNPSGSASKTGSVLVGDELLEI 76
P V+T+ + TGLG+ + G +R + V++ + P G K G + GD+L+ I
Sbjct: 14 PAFRVITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 25 VVTLERSHTGLGISLAG--HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V LER +GLG+ L H +++ L P A+ G + +GD +LE+
Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R +GLG ++ G D+ ++ ++V + +G+A+ G + GD++L +
Sbjct: 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues
451-549)
Length = 121
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 5 GNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSA 61
G++++ K+ K+ + L++ GLG S+ +D T ++V + P G+A
Sbjct: 21 GSYNTKKIGKRLN--------IQLKKGTEGLGFSIT-SRDVTIGGSAPIYVKNILPRGAA 71
Query: 62 SKTGSVLVGDELLEI 76
+ G + GD L+E+
Sbjct: 72 IQDGRLKAGDRLIEV 86
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R +GLG ++ G D+ ++ ++V + +G+A+ G + GD++L +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R +GLG ++ G D+ ++ ++V + +G+A+ G + GD++L +
Sbjct: 13 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 67
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76
+F+ L P G A TG + V DE+LE+
Sbjct: 67 IFISRLVPGGLAQSTGLLAVNDEVLEV 93
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GLG+S+ G ++ T VFV + G A G ++ GD++L +
Sbjct: 17 GLGLSIVGKRNDT--GVFVSDIVKGGIADADGRLMQGDQILMV 57
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 16 YGSLGPDLVVVTLERSHTGLGISLAGHKDRTKM--------AVFVCGLNPSGSASKTGSV 67
+ GP +V + LGIS+ G + K +F+ + A KT ++
Sbjct: 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69
Query: 68 LVGDELLEI 76
GD++LE+
Sbjct: 70 KTGDKILEV 78
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 SDKVKKKYGSLGPDLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
S+ + + S+ PD VV L S G LG+++ + ++ +AVF+ + P + S T
Sbjct: 59 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLT 116
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+V + L + GLG S+AG + +++V + G+A K G + VGD LL +
Sbjct: 25 VVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 SDKVKKKYGSLGPDLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
S+ + + S+ PD VV L S G LG+++ + ++ +AVF+ + P + S T
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLT 122
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 SDKVKKKYGSLGPDLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
S+ + + S+ PD VV L S G LG+++ + ++ +AVF+ + P + S T
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLT 122
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 9 SDKVKKKYGSLGPDLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
S+ + + S+ PD VV L S G LG+++ + ++ +AVF+ + P + S T
Sbjct: 65 SEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLT 122
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L++ GLG S+ +D T ++V + P G+A + G + GD L+E+
Sbjct: 15 IQLKKGTEGLGFSIT-SRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ V L + GLG S+AG + ++++ + G+A K G + +GD LL +
Sbjct: 4 IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 3 SFGNFSSDKVKKKYGSLGPDLV-VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGS 60
S G + ++V + G G + V +V +E++ LG ++ D ++ V G G+
Sbjct: 5 SSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKG----GA 60
Query: 61 ASKTGSVLVGDELLEI 76
A K+G + GDE+LEI
Sbjct: 61 AEKSGLLHEGDEVLEI 76
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSAS 62
N++ +KVK++ + P+ +V ++ S L I L G K T V GL P+ +
Sbjct: 246 LSNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 305
Query: 63 KTGSVLVGDEL 73
KTG + + +
Sbjct: 306 KTGGLEIDSDF 316
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRT---KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L++ GLG S+ +D T ++V + P G+A + G + GD L+E+
Sbjct: 9 IQLKKGTEGLGFSIT-SRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 61
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSAS 62
N++ +KVK++ + P+ +V ++ S L I L G K T V GL P+ +
Sbjct: 270 LSNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 329
Query: 63 KTGSVLVGDEL 73
KTG + + +
Sbjct: 330 KTGGLEIDSDF 340
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSAS 62
N++ +KV+++ + P+ +V ++ S L I L G K T V GL P+ +
Sbjct: 228 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 287
Query: 63 KTGSVLVGDEL 73
KTG + + +
Sbjct: 288 KTGGLEIDSDF 298
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSAS 62
N++ +KV+++ + P+ +V ++ S L I L G K T V GL P+ +
Sbjct: 246 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 305
Query: 63 KTGSV 67
KTG +
Sbjct: 306 KTGGL 310
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSAS 62
N++ +KVK++ + P+ +V ++ S L I L G K T V GL P+ +
Sbjct: 265 LSNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 324
Query: 63 KTGSVLVGDEL 73
KTG + + +
Sbjct: 325 KTGGLEIDSDF 335
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76
+F+ L P G A TG + V DE++E+
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R TG G + G + + +++ + P G+A G + GDEL+ +
Sbjct: 6 IFLWRKETGFGFRILGGNEPGE-PIYIGHIVPLGAADTDGRLRSGDELISV 55
>pdb|1OW4|A Chain A, Crystal Structure Of A Pheromone Binding Protein From
The Cockroach Leucophaea Maderae In Complex With The
Fluorescent Reporter Ans (1-
Anilinonaphtalene-8-sulfonic Acid)
pdb|1OW4|B Chain B, Crystal Structure Of A Pheromone Binding Protein From
The Cockroach Leucophaea Maderae In Complex With The
Fluorescent Reporter Ans (1-
Anilinonaphtalene-8-sulfonic Acid)
pdb|1P28|A Chain A, The Crystal Structure Of A Pheromone Binding Protein
From The Cockroach Leucophaea Maderae In Complex With A
Component Of The Pheromonal Blend:
3-Hydroxy-Butan-2-One.
pdb|1P28|B Chain B, The Crystal Structure Of A Pheromone Binding Protein
From The Cockroach Leucophaea Maderae In Complex With A
Component Of The Pheromonal Blend:
3-Hydroxy-Butan-2-One
Length = 129
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 45 RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
RT + C L+ G S G++ GD+L+ +
Sbjct: 50 RTAQCLLACALDKVGLISPEGAIYTGDDLMPV 81
>pdb|1ORG|A Chain A, The Crystal Structure Of A Pheromone Binding Protein
From The Cockroach Leucophaea Maderae Reveals A New
Mechanism Of Pheromone Binding
pdb|1ORG|B Chain B, The Crystal Structure Of A Pheromone Binding Protein
From The Cockroach Leucophaea Maderae Reveals A New
Mechanism Of Pheromone Binding
Length = 118
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 45 RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
RT + C L+ G S G++ GD+L+ +
Sbjct: 39 RTAQCLLACALDKVGLISPEGAIYTGDDLMPV 70
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76
+F+ L P G A TG + V DE++E+
Sbjct: 42 IFISRLVPGGLAESTGLLAVNDEVIEV 68
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 35 LGISLAG---HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
LG+++AG H++ + ++V + P G S+ G + GD LL +
Sbjct: 38 LGMTVAGGASHRE-WDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76
+F+ L P G A TG + V DE++E+
Sbjct: 40 IFISRLVPGGLAESTGLLAVNDEVIEV 66
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GP L+V ++ + LGISL R K + + + P+ ++G++ GD +L I
Sbjct: 15 GP-LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI 70
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 30 RSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
R GLG S+AG +++V + G+A K G + +GD+LL +
Sbjct: 10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 60
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 15 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 3 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 57
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKM--AVFVCGLNPSGSASKTGSVLVGDELLEI 76
D+ V L ++ LGIS+ G + + ++V + P G+A G + GD +L +
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 56
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ + L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 10 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 67
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD+LL +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKM--AVFVCGLNPSGSASKTGSVLVGDELLEI 76
D+ V L ++ LGIS+ G + + ++V + P G+A G + GD +L +
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76
+F+ L P G A TG + V DE++E+
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 10 DKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCG------LNPSGSASK 63
DK+KK G G D+++ L + +SL H R V V G +NP + +K
Sbjct: 229 DKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGR----VIVVGSRGTIEINPRDTMAK 284
Query: 64 TGSVL 68
S++
Sbjct: 285 ESSII 289
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GS G +V +++S LGI++ G + + + + GSA G + VG +LE+
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ + L + GLG S+AG +++V + G+A K G + +GD+LL +
Sbjct: 9 IMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 66
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKDRTKM----AVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + GLG S+AG + +++V + G+A K G + +GD++L +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,222,608
Number of Sequences: 62578
Number of extensions: 70297
Number of successful extensions: 268
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 107
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)