Query psy18106
Match_columns 76
No_of_seqs 122 out of 922
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:41:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3550|consensus 99.4 4.4E-13 9.6E-18 90.3 4.9 54 22-76 90-143 (207)
2 PF00595 PDZ: PDZ domain (Also 99.3 6.4E-12 1.4E-16 73.7 4.9 51 25-76 1-52 (81)
3 KOG3209|consensus 99.3 1.1E-11 2.4E-16 98.0 6.1 56 20-76 896-951 (984)
4 KOG1892|consensus 99.1 1E-10 2.2E-15 95.0 6.0 55 21-76 932-988 (1629)
5 KOG3209|consensus 99.0 1.2E-09 2.7E-14 86.6 6.1 58 19-76 341-399 (984)
6 KOG3571|consensus 98.8 8E-09 1.7E-13 79.5 6.3 58 19-76 246-305 (626)
7 KOG3580|consensus 98.7 1.7E-08 3.7E-13 79.5 5.1 53 22-76 8-66 (1027)
8 KOG3651|consensus 98.7 3.4E-08 7.3E-13 72.8 5.6 52 24-76 6-58 (429)
9 cd00992 PDZ_signaling PDZ doma 98.7 1.3E-07 2.9E-12 54.5 6.4 51 24-76 2-53 (82)
10 smart00228 PDZ Domain present 98.7 1.6E-07 3.4E-12 54.1 6.6 52 23-76 2-53 (85)
11 KOG3551|consensus 98.6 2.3E-08 4.9E-13 75.3 3.5 53 23-76 85-138 (506)
12 KOG3553|consensus 98.6 1E-07 2.3E-12 60.4 5.3 51 25-76 18-86 (124)
13 KOG3549|consensus 98.6 5.7E-08 1.2E-12 72.7 4.3 55 21-76 53-108 (505)
14 KOG3580|consensus 98.5 3.4E-07 7.3E-12 72.4 5.6 59 12-76 398-456 (1027)
15 cd00136 PDZ PDZ domain, also c 98.3 1.8E-06 3.8E-11 48.6 4.6 39 34-76 2-40 (70)
16 PF13180 PDZ_2: PDZ domain; PD 98.0 6.8E-06 1.5E-10 48.2 3.8 40 34-76 2-41 (82)
17 KOG3606|consensus 98.0 5.5E-06 1.2E-10 60.4 3.5 53 24-76 160-222 (358)
18 KOG0609|consensus 97.7 6.1E-05 1.3E-09 58.4 4.4 52 22-76 122-174 (542)
19 cd00988 PDZ_CTP_protease PDZ d 97.7 9.3E-05 2E-09 42.9 4.1 39 33-76 2-40 (85)
20 KOG3542|consensus 97.6 7E-05 1.5E-09 60.4 3.5 53 22-76 535-589 (1283)
21 cd00990 PDZ_glycyl_aminopeptid 97.5 0.00029 6.3E-09 40.4 4.3 37 35-76 3-39 (80)
22 KOG3552|consensus 97.3 0.00019 4E-09 59.2 3.1 47 22-76 55-101 (1298)
23 cd00991 PDZ_archaeal_metallopr 97.2 0.00039 8.5E-09 40.5 3.1 29 47-76 9-37 (79)
24 cd00986 PDZ_LON_protease PDZ d 97.2 0.00051 1.1E-08 39.7 3.2 27 48-76 8-34 (79)
25 cd00989 PDZ_metalloprotease PD 97.1 0.00074 1.6E-08 38.5 3.7 28 48-76 12-39 (79)
26 cd00987 PDZ_serine_protease PD 96.9 0.0012 2.7E-08 38.2 2.9 28 48-76 24-51 (90)
27 PLN00049 carboxyl-terminal pro 96.8 0.0021 4.6E-08 47.7 4.7 44 32-76 84-129 (389)
28 PRK11186 carboxy-terminal prot 96.8 0.0015 3.2E-08 52.1 4.0 41 32-76 243-283 (667)
29 TIGR00225 prc C-terminal pepti 96.7 0.0022 4.7E-08 46.5 3.8 40 32-76 50-89 (334)
30 KOG3605|consensus 96.6 0.001 2.2E-08 53.2 1.8 54 23-76 646-701 (829)
31 COG0793 Prc Periplasmic protea 96.6 0.003 6.5E-08 47.5 3.9 42 31-76 98-139 (406)
32 TIGR02037 degP_htrA_DO peripla 96.5 0.0044 9.4E-08 46.2 4.2 28 48-76 257-284 (428)
33 TIGR00054 RIP metalloprotease 96.0 0.015 3.2E-07 43.6 5.1 28 48-76 203-230 (420)
34 KOG3605|consensus 95.7 0.012 2.5E-07 47.4 3.5 46 22-76 736-783 (829)
35 KOG3129|consensus 95.7 0.01 2.2E-07 41.9 2.7 29 47-76 138-166 (231)
36 PRK10139 serine endoprotease; 95.6 0.062 1.3E-06 40.9 7.0 28 48-76 390-417 (455)
37 PRK10139 serine endoprotease; 95.3 0.02 4.3E-07 43.6 3.4 28 48-76 290-317 (455)
38 PRK10779 zinc metallopeptidase 95.3 0.072 1.6E-06 40.2 6.2 28 48-76 221-248 (449)
39 PRK10898 serine endoprotease; 95.2 0.02 4.4E-07 42.1 3.1 28 48-76 279-306 (353)
40 TIGR02037 degP_htrA_DO peripla 95.2 0.021 4.5E-07 42.6 3.1 28 48-76 362-389 (428)
41 TIGR02038 protease_degS peripl 95.0 0.02 4.3E-07 42.0 2.6 28 48-76 278-305 (351)
42 PRK10942 serine endoprotease; 95.0 0.027 5.8E-07 43.0 3.4 28 48-76 311-338 (473)
43 KOG3938|consensus 94.9 0.027 5.8E-07 41.3 2.9 54 18-74 122-175 (334)
44 PRK10779 zinc metallopeptidase 94.6 0.019 4.1E-07 43.3 1.7 26 50-76 128-153 (449)
45 PF04495 GRASP55_65: GRASP55/6 94.5 0.11 2.5E-06 33.8 5.0 57 18-75 6-70 (138)
46 PRK10942 serine endoprotease; 94.4 0.041 8.9E-07 42.0 3.0 28 48-76 408-435 (473)
47 TIGR00054 RIP metalloprotease 93.9 0.042 9.2E-07 41.2 2.2 29 47-76 127-155 (420)
48 TIGR01713 typeII_sec_gspC gene 93.4 0.13 2.8E-06 36.6 3.9 29 47-76 190-218 (259)
49 COG3975 Predicted protease wit 93.3 0.18 4E-06 39.7 4.9 40 32-76 450-489 (558)
50 KOG1738|consensus 89.8 0.31 6.8E-06 39.0 2.8 44 30-76 210-253 (638)
51 COG0265 DegQ Trypsin-like seri 89.4 0.42 9.1E-06 34.6 3.0 29 47-76 269-297 (347)
52 KOG4371|consensus 87.7 0.51 1.1E-05 40.1 2.8 51 23-75 1246-1297(1332)
53 TIGR02860 spore_IV_B stage IV 82.0 2.7 5.9E-05 32.0 4.3 28 48-76 105-140 (402)
54 KOG1421|consensus 71.0 4.4 9.6E-05 33.5 2.9 27 48-76 303-329 (955)
55 COG3480 SdrC Predicted secrete 70.4 4.5 9.7E-05 30.3 2.6 27 48-76 130-156 (342)
56 KOG0606|consensus 68.9 10 0.00022 32.7 4.6 51 25-76 629-685 (1205)
57 KOG1320|consensus 60.7 10 0.00022 29.7 3.0 28 48-76 398-425 (473)
58 PRK15464 cold shock-like prote 56.4 37 0.0008 19.5 4.4 43 25-74 8-52 (70)
59 COG2144 Selenophosphate synthe 56.1 7.8 0.00017 28.8 1.6 46 30-75 118-168 (324)
60 PF14685 Tricorn_PDZ: Tricorn 53.1 18 0.00038 21.9 2.6 29 48-76 12-49 (88)
61 TIGR00223 panD L-aspartate-alp 49.8 71 0.0015 20.8 5.6 54 12-74 32-86 (126)
62 cd06919 Asp_decarbox Aspartate 49.2 68 0.0015 20.4 5.6 54 12-74 31-85 (111)
63 KOG4407|consensus 47.0 6.5 0.00014 34.8 0.1 27 49-76 144-170 (1973)
64 PRK05449 aspartate alpha-decar 46.7 80 0.0017 20.6 5.6 53 13-74 33-86 (126)
65 PF11874 DUF3394: Domain of un 44.0 30 0.00065 23.8 2.9 29 47-76 121-149 (183)
66 COG1018 Hmp Flavodoxin reducta 42.1 1.1E+02 0.0024 21.7 5.7 55 20-74 37-95 (266)
67 KOG1945|consensus 40.9 16 0.00035 27.8 1.3 52 23-74 100-156 (377)
68 PF02261 Asp_decarbox: Asparta 37.6 15 0.00033 23.6 0.6 54 12-74 32-86 (116)
69 COG0750 Predicted membrane-ass 36.5 35 0.00075 24.6 2.4 24 52-76 133-156 (375)
70 COG0853 PanD Aspartate 1-decar 34.0 1.4E+02 0.0029 19.5 5.1 18 55-74 68-85 (126)
71 KOG3834|consensus 33.3 1.4E+02 0.0031 23.4 5.3 54 21-74 76-135 (462)
72 KOG3532|consensus 31.4 58 0.0012 27.4 3.1 29 47-76 397-425 (1051)
73 TIGR03802 Asp_Ala_antiprt aspa 30.5 44 0.00095 26.3 2.3 54 22-75 218-274 (562)
74 cd03703 aeIF5B_II aeIF5B_II: T 30.1 28 0.0006 22.0 1.0 11 64-74 24-34 (110)
75 TIGR01379 thiL thiamine-monoph 30.1 1.1E+02 0.0025 21.7 4.2 43 33-75 109-155 (317)
76 COG2985 Predicted permease [Ge 30.0 1.9E+02 0.0042 23.2 5.6 54 23-76 202-259 (544)
77 PF15057 DUF4537: Domain of un 29.9 25 0.00054 22.3 0.7 26 49-75 39-64 (124)
78 PF02080 TrkA_C: TrkA-C domain 28.9 14 0.0003 20.1 -0.5 12 64-75 45-56 (71)
79 TIGR00476 selD selenium donor 28.3 63 0.0014 23.5 2.7 43 33-75 131-177 (347)
80 cd02195 SelD Selenophosphate s 28.2 74 0.0016 22.4 3.0 42 33-74 124-169 (287)
81 PRK10354 RNA chaperone/anti-te 28.2 1.2E+02 0.0026 17.1 5.3 37 31-74 14-52 (70)
82 PRK10926 ferredoxin-NADP reduc 28.1 2E+02 0.0043 19.6 5.1 54 20-73 33-88 (248)
83 PRK05326 potassium/proton anti 27.5 76 0.0016 24.6 3.1 27 49-75 440-469 (562)
84 PF08541 ACP_syn_III_C: 3-Oxoa 26.8 32 0.00068 19.7 0.7 14 62-75 61-74 (90)
85 PRK13289 bifunctional nitric o 26.5 2.4E+02 0.0053 20.4 5.5 53 20-73 187-245 (399)
86 cd06209 BenDO_FAD_NAD Benzoate 26.1 2E+02 0.0043 19.0 4.8 57 18-74 31-88 (228)
87 PRK09507 cspE cold shock prote 25.7 1.3E+02 0.0029 16.9 5.0 42 26-74 8-51 (69)
88 KOG4407|consensus 25.6 1E+02 0.0022 27.9 3.7 52 24-76 48-123 (1973)
89 cd03701 IF2_IF5B_II IF2_IF5B_I 25.1 37 0.00079 20.4 0.8 11 64-74 24-34 (95)
90 PRK00943 selenophosphate synth 25.1 1.1E+02 0.0023 22.4 3.4 42 33-74 130-175 (347)
91 TIGR00432 arcsn_tRNA_tgt tRNA- 23.6 1.2E+02 0.0027 24.0 3.7 51 26-76 439-506 (540)
92 cd06195 FNR1 Ferredoxin-NADP+ 22.8 2.3E+02 0.0051 18.8 4.6 56 19-74 26-84 (241)
93 PRK03818 putative transporter; 22.7 1.1E+02 0.0025 24.0 3.3 40 36-75 303-345 (552)
94 cd00396 PurM-like AIR (aminoim 22.7 1.5E+02 0.0033 19.7 3.6 43 33-75 69-120 (222)
95 PRK14105 selenophosphate synth 22.5 1.5E+02 0.0033 21.5 3.8 41 33-74 127-172 (345)
96 cd02196 PurM PurM (Aminoimidaz 22.4 1.2E+02 0.0025 21.5 3.1 42 33-74 93-144 (297)
97 TIGR00878 purM phosphoribosyla 22.3 1.5E+02 0.0033 21.4 3.7 43 33-75 125-177 (332)
98 KOG2921|consensus 22.2 1.1E+02 0.0024 23.9 3.1 30 47-76 219-248 (484)
99 cd00756 MoaE MoaE family. Memb 22.1 51 0.0011 20.9 1.1 18 59-76 67-84 (124)
100 PRK03760 hypothetical protein; 21.8 59 0.0013 20.4 1.3 25 48-74 89-113 (117)
101 PRK02268 hypothetical protein; 21.5 95 0.0021 20.4 2.3 20 54-74 24-43 (141)
102 PRK05385 phosphoribosylaminoim 21.0 1.3E+02 0.0029 21.6 3.2 41 33-74 125-176 (327)
103 cd02194 ThiL ThiL (Thiamine-mo 20.9 1.8E+02 0.0039 20.3 3.8 42 33-75 108-154 (291)
104 PRK06222 ferredoxin-NADP(+) re 20.9 2.9E+02 0.0063 19.3 4.8 55 18-74 28-83 (281)
105 COG0031 CysK Cysteine synthase 20.4 66 0.0014 23.7 1.5 16 60-75 52-67 (300)
106 COG4100 Cystathionine beta-lya 20.4 51 0.0011 25.1 0.9 17 60-76 97-113 (416)
107 cd02197 HypE HypE (Hydrogenase 20.3 1.3E+02 0.0028 21.1 3.0 42 33-75 107-158 (293)
108 PLN02557 phosphoribosylformylg 20.2 1.4E+02 0.003 22.6 3.2 41 34-74 171-221 (379)
No 1
>KOG3550|consensus
Probab=99.39 E-value=4.4e-13 Score=90.33 Aligned_cols=54 Identities=30% Similarity=0.628 Sum_probs=50.4
Q ss_pred cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..+.|+|.|...||||.++||++. +.+|||++|+|||.|++-|.|+.||++|.|
T Consensus 90 hprvvelpktdeglgfnvmggkeq-nspiyisriipggvadrhgglkrgdqllsv 143 (207)
T KOG3550|consen 90 HPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSV 143 (207)
T ss_pred CCceeecCccccccceeeccCccc-CCceEEEeecCCccccccCcccccceeEee
Confidence 357899999999999999999996 789999999999999999999999999976
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.28 E-value=6.4e-12 Score=73.69 Aligned_cols=51 Identities=41% Similarity=0.687 Sum_probs=45.9
Q ss_pred EEEEec-CCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 25 VVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 25 ~v~L~k-~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+|+|.| ...+|||++.++.+....++||+.|.|++||+++| |++||+|++|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~I 52 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEI 52 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhhee
Confidence 478888 48899999999998544799999999999999999 9999999986
No 3
>KOG3209|consensus
Probab=99.25 E-value=1.1e-11 Score=97.96 Aligned_cols=56 Identities=39% Similarity=0.660 Sum_probs=52.6
Q ss_pred CCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 20 ~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
...+.+|+|+|+.+||||||.||++. .+++||-++.++|||.+||||++||+|+||
T Consensus 896 n~~~~~VelErG~kGFGFSiRGGrey-nM~LfVLRlAeDGPA~rdGrm~VGDqi~eI 951 (984)
T KOG3209|consen 896 NGDLYTVELERGAKGFGFSIRGGREY-NMDLFVLRLAEDGPAIRDGRMRVGDQITEI 951 (984)
T ss_pred cCCeeEEEeeccccccceEeeccccc-ccceEEEEeccCCCccccCceeecceEEEe
Confidence 45688999999999999999999886 799999999999999999999999999986
No 4
>KOG1892|consensus
Probab=99.12 E-value=1e-10 Score=94.97 Aligned_cols=55 Identities=31% Similarity=0.702 Sum_probs=49.7
Q ss_pred CcEEEEEEecCCCcccEEEecCCC--CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 21 ~e~~~v~L~k~~~gLG~si~Gg~~--~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.|+.+|+|.|+ +|+|+||+..++ ...++|||++|.+||+|+.||||+.||+||.|
T Consensus 932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsV 988 (1629)
T KOG1892|consen 932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSV 988 (1629)
T ss_pred CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeee
Confidence 46899999998 899999987766 34789999999999999999999999999986
No 5
>KOG3209|consensus
Probab=98.96 E-value=1.2e-09 Score=86.57 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=53.8
Q ss_pred CCCcEEEEEEecCCCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 19 LGPDLVVVTLERSHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 19 ~~~e~~~v~L~k~~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+.+++..++|.|+..||||+|.||.+ .++..+-|++|.++|||++||+|.+||.|+.|
T Consensus 341 lkG~~ist~LvKg~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~I 399 (984)
T KOG3209|consen 341 LKGELISTKLVKGYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHI 399 (984)
T ss_pred hCCeEEEEEEeecccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEE
Confidence 56789999999999999999999997 56889999999999999999999999999875
No 6
>KOG3571|consensus
Probab=98.83 E-value=8e-09 Score=79.53 Aligned_cols=58 Identities=26% Similarity=0.492 Sum_probs=49.9
Q ss_pred CCCcEEEEEEecC-CCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 19 LGPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 19 ~~~e~~~v~L~k~-~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+.-++.+|.|.-. -+=|||||+|... ..+.+|||..|.++|+.+.||||.+||.||+|
T Consensus 246 mslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQV 305 (626)
T KOG3571|consen 246 MSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQV 305 (626)
T ss_pred cceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEe
Confidence 3446788888655 5669999999876 45889999999999999999999999999997
No 7
>KOG3580|consensus
Probab=98.73 E-value=1.7e-08 Score=79.51 Aligned_cols=53 Identities=25% Similarity=0.557 Sum_probs=47.9
Q ss_pred cEEEEEEecC-CCcccEEEecCCCCCC-----CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERS-HTGLGISLAGHKDRTK-----MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~-~~gLG~si~Gg~~~~~-----~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
|.++++|.|+ ..||||.|.||+|++. ..|+|+.|.|||||+ |+||.+|+|+.|
T Consensus 8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMV 66 (1027)
T KOG3580|consen 8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMV 66 (1027)
T ss_pred hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEE
Confidence 5689999999 7899999999999754 399999999999997 899999999875
No 8
>KOG3651|consensus
Probab=98.69 E-value=3.4e-08 Score=72.75 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=46.9
Q ss_pred EEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 24 VVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 24 ~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
-+|+|.|+ .+=+||||-||... ++.+||.+|+.+.||++||+++.||+|+.|
T Consensus 6 ~~v~ltKD~~nliGISIGGGapy-CPClYiVQvFD~tPAa~dG~i~~GDEi~av 58 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPY-CPCLYIVQVFDKTPAAKDGRIRCGDEIVAV 58 (429)
T ss_pred CcEEEeeccccceeEEecCCCCc-CCeEEEEEeccCCchhccCccccCCeeEEe
Confidence 46899999 55669999999875 899999999999999999999999999975
No 9
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.66 E-value=1.3e-07 Score=54.49 Aligned_cols=51 Identities=43% Similarity=0.735 Sum_probs=43.9
Q ss_pred EEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 24 VVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 24 ~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+.++|.+. ..+|||++.++.+. ..+++|..|.++++|++ ..|++||+|++|
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~-~gl~~GD~I~~i 53 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS-GGGIFVSRVEPGGPAER-GGLRVGDRILEV 53 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC-CCCeEEEEECCCChHHh-CCCCCCCEEEEE
Confidence 46788887 78999999987653 46899999999999999 669999999985
No 10
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.65 E-value=1.6e-07 Score=54.07 Aligned_cols=52 Identities=42% Similarity=0.632 Sum_probs=43.5
Q ss_pred EEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 23 ~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
...+++.|....|||++...... ..+++|..|.++++|++.| |++||+|++|
T Consensus 2 ~~~~~~~~~~~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~I 53 (85)
T smart00228 2 PRLVELEKGGGGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEV 53 (85)
T ss_pred cEEEEEEECCCcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence 35678888778999999876542 2689999999999999988 9999999975
No 11
>KOG3551|consensus
Probab=98.65 E-value=2.3e-08 Score=75.33 Aligned_cols=53 Identities=28% Similarity=0.547 Sum_probs=49.1
Q ss_pred EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+.|++.|. .+||||||.||+++ +++|.|++|++|=+|++.+.|..||.||.|
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSV 138 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSV 138 (506)
T ss_pred cceeEEEEecCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEe
Confidence 367888887 78999999999996 899999999999999999999999999986
No 12
>KOG3553|consensus
Probab=98.61 E-value=1e-07 Score=60.43 Aligned_cols=51 Identities=25% Similarity=0.523 Sum_probs=42.5
Q ss_pred EEEEecCC----Cc-----ccEEEecCCCC---------CCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 25 VVTLERSH----TG-----LGISLAGHKDR---------TKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 25 ~v~L~k~~----~g-----LG~si~Gg~~~---------~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.|+|.|.. .| +||+|-||.|. ++.+|||.+|.+|+||+..| |+.+|.||+|
T Consensus 18 ~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQv 86 (124)
T KOG3553|consen 18 RVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQV 86 (124)
T ss_pred EEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEe
Confidence 46666552 34 79999999983 35799999999999999976 9999999986
No 13
>KOG3549|consensus
Probab=98.59 E-value=5.7e-08 Score=72.66 Aligned_cols=55 Identities=29% Similarity=0.551 Sum_probs=50.6
Q ss_pred CcEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 21 PDLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 21 ~e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
...++|+|.|. -+|||+||.||.++ +.+|.|++|..+-+|+..|.|.+||.||+|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqv 108 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQV 108 (505)
T ss_pred CCceeEEEEeeecCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEe
Confidence 35688999888 78999999999995 799999999999999999999999999986
No 14
>KOG3580|consensus
Probab=98.46 E-value=3.4e-07 Score=72.41 Aligned_cols=59 Identities=29% Similarity=0.616 Sum_probs=48.6
Q ss_pred hhhhcCCCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 12 VKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 12 ~~~~~~~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+..|... +..+.|.+.|+ ...|+.++||.| .+|||+.|..++||+.+| |+.||+||.|
T Consensus 398 ~m~~ygys-P~tk~VrF~KG-dSvGLRLAGGND---VGIFVaGvqegspA~~eG-lqEGDQIL~V 456 (1027)
T KOG3580|consen 398 DMAIYGYS-PNTKMVRFKKG-DSVGLRLAGGND---VGIFVAGVQEGSPAEQEG-LQEGDQILKV 456 (1027)
T ss_pred HHHHhcCC-CCceeEEeecC-CeeeeEeccCCc---eeEEEeecccCCchhhcc-ccccceeEEe
Confidence 34444433 34677888875 799999999986 799999999999999987 9999999986
No 15
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.29 E-value=1.8e-06 Score=48.62 Aligned_cols=39 Identities=31% Similarity=0.605 Sum_probs=33.9
Q ss_pred cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+|||++.+..+ .+++|..|.+++||++ ..|++||+|++|
T Consensus 2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~-~gl~~GD~I~~I 40 (70)
T cd00136 2 GLGFSIRGGTE---GGVVVLSVEPGSPAER-AGLQAGDVILAV 40 (70)
T ss_pred CccEEEecCCC---CCEEEEEeCCCCHHHH-cCCCCCCEEEEE
Confidence 68999987764 5799999999999998 459999999985
No 16
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.05 E-value=6.8e-06 Score=48.18 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=32.2
Q ss_pred cccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 34 GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 34 gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.||+++..-.+ ..+++|..|.+++||++.| |++||.|++|
T Consensus 2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~i 41 (82)
T PF13180_consen 2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAI 41 (82)
T ss_dssp E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEE
T ss_pred EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEE
Confidence 57888775544 4689999999999999987 9999999975
No 17
>KOG3606|consensus
Probab=98.01 E-value=5.5e-06 Score=60.38 Aligned_cols=53 Identities=30% Similarity=0.470 Sum_probs=45.9
Q ss_pred EEEEEecC--CCcccEEEecCCC--------CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 24 VVVTLERS--HTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 24 ~~v~L~k~--~~gLG~si~Gg~~--------~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+.|.|.|- .++|||-|.-|.. ...++|||+++.|||-|+..|-|-+.|++|||
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEV 222 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEV 222 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEE
Confidence 46788776 5799999998875 12479999999999999999999999999997
No 18
>KOG0609|consensus
Probab=97.67 E-value=6.1e-05 Score=58.42 Aligned_cols=52 Identities=29% Similarity=0.488 Sum_probs=45.4
Q ss_pred cEEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.++.|++.|. ...||.++.--.. ..+||.+|..||.|++.|.|++||+|+||
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~---~~~~vARI~~GG~~~r~glL~~GD~i~Ev 174 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED---TKVVVARIMHGGMADRQGLLHVGDEILEV 174 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC---CccEEeeeccCCcchhccceeeccchhee
Confidence 3678999998 8899999984332 27999999999999999999999999986
No 19
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.66 E-value=9.3e-05 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=32.3
Q ss_pred CcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 33 TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+||+.+.- + ..+++|..|.+++||++. .|++||+|++|
T Consensus 2 ~~lG~~~~~--~--~~~~~V~~v~~~s~a~~~-gl~~GD~I~~v 40 (85)
T cd00988 2 GGIGLELKY--D--DGGLVITSVLPGSPAAKA-GIKAGDIIVAI 40 (85)
T ss_pred eEEEEEEEE--c--CCeEEEEEecCCCCHHHc-CCCCCCEEEEE
Confidence 478888753 2 367999999999999996 59999999975
No 20
>KOG3542|consensus
Probab=97.57 E-value=7e-05 Score=60.40 Aligned_cols=53 Identities=26% Similarity=0.494 Sum_probs=47.0
Q ss_pred cEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..+.|.|.|. ...|=|++.||.+. ..+|||..|.|+.-|++.| |+.||+||||
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEV 589 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEV 589 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhc
Confidence 4567888885 56999999999995 6899999999999999977 9999999987
No 21
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.45 E-value=0.00029 Score=40.42 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=29.6
Q ss_pred ccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 35 LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 35 LG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+|+.+.- + +.++.|..|.++++|++.| |++||+|++|
T Consensus 3 ~G~~~~~--~--~~~~~V~~V~~~s~a~~aG-l~~GD~I~~I 39 (80)
T cd00990 3 LGLTLDK--E--EGLGKVTFVRDDSPADKAG-LVAGDELVAV 39 (80)
T ss_pred ccEEEEc--c--CCcEEEEEECCCChHHHhC-CCCCCEEEEE
Confidence 4666642 1 3469999999999999976 9999999986
No 22
>KOG3552|consensus
Probab=97.31 E-value=0.00019 Score=59.18 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=38.6
Q ss_pred cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+.+.|++.|+ ..|||-++.| .+++|..|.+|||+. |+|++||+||+|
T Consensus 55 ~pr~vq~~r~-~~lGFgfvag-----rPviVr~VT~GGps~--GKL~PGDQIl~v 101 (1298)
T KOG3552|consen 55 EPRQVQLQRN-ASLGFGFVAG-----RPVIVRFVTEGGPSI--GKLQPGDQILAV 101 (1298)
T ss_pred cchhhhhhcc-ccccceeecC-----CceEEEEecCCCCcc--ccccCCCeEEEe
Confidence 4677888886 4566665555 579999999999998 899999999986
No 23
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.23 E-value=0.00039 Score=40.52 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..+++|..|.+++||++.| |++||+|++|
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~I 37 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSI 37 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEE
Confidence 3589999999999999865 9999999985
No 24
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.17 E-value=0.00051 Score=39.67 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||+. + |++||.|++|
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~I 34 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAV 34 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEE
Confidence 4689999999999986 6 9999999975
No 25
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.15 E-value=0.00074 Score=38.46 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.++.|..|.++++|++.| |++||+|++|
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~i 39 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAI 39 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEE
Confidence 568999999999999866 9999999985
No 26
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.86 E-value=0.0012 Score=38.22 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.++++|++.| |++||.|++|
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~I 51 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAV 51 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEE
Confidence 489999999999999865 9999999975
No 27
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=96.84 E-value=0.0021 Score=47.71 Aligned_cols=44 Identities=27% Similarity=0.494 Sum_probs=34.4
Q ss_pred CCcccEEEecCCC--CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 32 HTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 32 ~~gLG~si~Gg~~--~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..|+|+.+.-... .+..+++|..|.+++||++.| |++||+|++|
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~I 129 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAI 129 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence 4688988763222 112379999999999999987 9999999986
No 28
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.83 E-value=0.0015 Score=52.07 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=34.2
Q ss_pred CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..|+|+.+.- + +..++|..|.|||||++.+.|++||+|++|
T Consensus 243 ~~GIGa~l~~--~--~~~~~V~~vipGsPA~ka~gLk~GD~IlaV 283 (667)
T PRK11186 243 LEGIGAVLQM--D--DDYTVINSLVAGGPAAKSKKLSVGDKIVGV 283 (667)
T ss_pred eeEEEEEEEE--e--CCeEEEEEccCCChHHHhCCCCCCCEEEEE
Confidence 4688888753 2 246899999999999998789999999986
No 29
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=96.71 E-value=0.0022 Score=46.46 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..++|+.+.-- ...++|..|.+++||++.| |++||+|++|
T Consensus 50 ~~~lG~~~~~~----~~~~~V~~V~~~spA~~aG-L~~GD~I~~I 89 (334)
T TIGR00225 50 LEGIGIQVGMD----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKI 89 (334)
T ss_pred eEEEEEEEEEE----CCEEEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence 35788887531 3479999999999999988 9999999986
No 30
>KOG3605|consensus
Probab=96.62 E-value=0.001 Score=53.19 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=44.3
Q ss_pred EEEEEEecC-CCcccEEEe-cCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 23 LVVVTLERS-HTGLGISLA-GHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 23 ~~~v~L~k~-~~gLG~si~-Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+.|.|.|- ++.||+-|+ -|-.+.-+.++|....++|||++.|+|-+||+|+.|
T Consensus 646 qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaI 701 (829)
T KOG3605|consen 646 QKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSI 701 (829)
T ss_pred cceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEee
Confidence 467888887 789999766 333344568899999999999999999999999875
No 31
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=96.57 E-value=0.003 Score=47.48 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 31 SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 31 ~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
...|+|+.+.-... ..+.|.++.+++||++.| |++||+|+.|
T Consensus 98 ~~~GiG~~i~~~~~---~~~~V~s~~~~~PA~kag-i~~GD~I~~I 139 (406)
T COG0793 98 EFGGIGIELQMEDI---GGVKVVSPIDGSPAAKAG-IKPGDVIIKI 139 (406)
T ss_pred cccceeEEEEEecC---CCcEEEecCCCChHHHcC-CCCCCEEEEE
Confidence 36799999885432 679999999999999998 9999999976
No 32
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.46 E-value=0.0044 Score=46.20 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=26.0
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||++.| |++||+|++|
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~V 284 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSV 284 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEE
Confidence 589999999999999977 9999999986
No 33
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.04 E-value=0.015 Score=43.62 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+..|..|.+++||++.| |++||+|++|
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~V 230 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSI 230 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEE
Confidence 478999999999999966 9999999986
No 34
>KOG3605|consensus
Probab=95.74 E-value=0.012 Score=47.41 Aligned_cols=46 Identities=33% Similarity=0.598 Sum_probs=38.3
Q ss_pred cEEEEEEecC--CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 22 e~~~v~L~k~--~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|.+.|. .--||||+..| +|-++..||.|+| |.+++|.+|+||
T Consensus 736 PV~~V~I~RPd~kyQLGFSVQNG--------iICSLlRGGIAER-GGVRVGHRIIEI 783 (829)
T KOG3605|consen 736 PVTTVLIRRPDLRYQLGFSVQNG--------IICSLLRGGIAER-GGVRVGHRIIEI 783 (829)
T ss_pred CceEEEeecccchhhccceeeCc--------Eeehhhcccchhc-cCceeeeeEEEE
Confidence 3567777776 45899999866 6778999999999 779999999986
No 35
>KOG3129|consensus
Probab=95.69 E-value=0.01 Score=41.91 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.5
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+-++|..|.|++||++. .|++||+|+++
T Consensus 138 ~~Fa~V~sV~~~SPA~~a-Gl~~gD~il~f 166 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEA-GLCVGDEILKF 166 (231)
T ss_pred cceEEEeecCCCChhhhh-CcccCceEEEe
Confidence 457899999999999995 59999999974
No 36
>PRK10139 serine endoprotease; Provisional
Probab=95.62 E-value=0.062 Score=40.90 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=25.4
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||++.| |++||.|++|
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~I 417 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGV 417 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence 478999999999999966 9999999986
No 37
>PRK10139 serine endoprotease; Provisional
Probab=95.30 E-value=0.02 Score=43.55 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||++.| |++||.|++|
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~I 317 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSL 317 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEE
Confidence 589999999999999865 9999999986
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=95.26 E-value=0.072 Score=40.23 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=24.9
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
....|..|.+++||++.| |++||+|++|
T Consensus 221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~I 248 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAG-LQAGDRIVKV 248 (449)
T ss_pred cCcEEEeeCCCCHHHHcC-CCCCCEEEEE
Confidence 357999999999999976 9999999986
No 39
>PRK10898 serine endoprotease; Provisional
Probab=95.20 E-value=0.02 Score=42.06 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||++.| |++||.|++|
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I 306 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISV 306 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEE
Confidence 589999999999999965 9999999986
No 40
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.16 E-value=0.021 Score=42.61 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.++++|++.| |++||.|++|
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~I 389 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSV 389 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEE
Confidence 589999999999999976 9999999986
No 41
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.02 E-value=0.02 Score=41.98 Aligned_cols=28 Identities=32% Similarity=0.758 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.+++||++.| |++||.|++|
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~I 305 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKY 305 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEE
Confidence 489999999999999866 9999999985
No 42
>PRK10942 serine endoprotease; Provisional
Probab=95.01 E-value=0.027 Score=43.03 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.++++|++.| |++||.|++|
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~I 338 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSL 338 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEE
Confidence 589999999999999966 9999999975
No 43
>KOG3938|consensus
Probab=94.87 E-value=0.027 Score=41.28 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=44.5
Q ss_pred CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
...++.++|++.|+.+-||++|. |+.-.--||++|.++++.++--.+++||.|=
T Consensus 122 HvkGq~kEv~v~KsedalGlTIT---DNG~GyAFIKrIkegsvidri~~i~VGd~IE 175 (334)
T KOG3938|consen 122 HVKGQAKEVEVVKSEDALGLTIT---DNGAGYAFIKRIKEGSVIDRIEAICVGDHIE 175 (334)
T ss_pred hhcCcceeEEEEecccccceEEe---eCCcceeeeEeecCCchhhhhhheeHHhHHH
Confidence 34677789999999999999996 3334567999999999999988889999763
No 44
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=94.64 E-value=0.019 Score=43.31 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred EEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 50 VFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 50 I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
-+|..|.|++||++.| |++||.|++|
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~v 153 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAV 153 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEE
Confidence 4789999999999976 9999999975
No 45
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=94.54 E-value=0.11 Score=33.82 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCCcEEEEEEecC-----CCcccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCC-CCEEEE
Q psy18106 18 SLGPDLVVVTLERS-----HTGLGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLV-GDELLE 75 (76)
Q Consensus 18 ~~~~e~~~v~L~k~-----~~gLG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~-GD~ile 75 (76)
.-....+.|.+... ..-||++|.=.... .....=|.+|.|++||++.| |++ .|-|+.
T Consensus 6 ~k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig 70 (138)
T PF04495_consen 6 AKGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIG 70 (138)
T ss_dssp TTTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEE
T ss_pred CCCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEE
Confidence 33445677777532 45779988754432 35688899999999999988 887 598875
No 46
>PRK10942 serine endoprotease; Provisional
Probab=94.40 E-value=0.041 Score=42.04 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|..|.++++|++.| |++||.|++|
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~V 435 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGA 435 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEE
Confidence 479999999999999866 9999999986
No 47
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=93.89 E-value=0.042 Score=41.22 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..+.+|..|.|++||++.| |++||.|++|
T Consensus 127 ~~g~~V~~V~~~SpA~~AG-L~~GDvI~~v 155 (420)
T TIGR00054 127 EVGPVIELLDKNSIALEAG-IEPGDEILSV 155 (420)
T ss_pred CCCceeeccCCCCHHHHcC-CCCCCEEEEE
Confidence 3567899999999999955 9999999975
No 48
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=93.42 E-value=0.13 Score=36.63 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=25.9
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..++.|..+.++++|++-| |++||.|++|
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~I 218 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVAL 218 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEE
Confidence 3689999999999999976 9999999975
No 49
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.35 E-value=0.18 Score=39.67 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 32 HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 32 ~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.-.||+.+. .+ .....|+.|.++|||++.| |.+||+|+.|
T Consensus 450 ~~~LGl~v~--~~--~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai 489 (558)
T COG3975 450 AYYLGLKVK--SE--GGHEKITFVFPGGPAYKAG-LSPGDKIVAI 489 (558)
T ss_pred CcccceEec--cc--CCeeEEEecCCCChhHhcc-CCCccEEEEE
Confidence 447888865 22 3568999999999999987 9999999975
No 50
>KOG1738|consensus
Probab=89.81 E-value=0.31 Score=38.96 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=37.4
Q ss_pred cCCCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 30 RSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 30 k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
|.+.|+|+-|.--- +...+|+.+.++++|+....|..||++++|
T Consensus 210 kp~eglg~~I~Ssy---dg~h~~s~~~e~Spad~~~kI~dgdEv~qi 253 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY---DGPHVTSKIFEQSPADYRQKILDGDEVLQI 253 (638)
T ss_pred CcccCCceEEeeec---CCceeccccccCChHHHhhcccCccceeee
Confidence 45778999887444 356799999999999999999999999986
No 51
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.42 Score=34.57 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..+++|..|.|++||++.| ++.||.|+++
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~v 297 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAV 297 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEE
Confidence 3569999999999999976 9999999874
No 52
>KOG4371|consensus
Probab=87.74 E-value=0.51 Score=40.09 Aligned_cols=51 Identities=31% Similarity=0.514 Sum_probs=41.0
Q ss_pred EEEEEEecC-CCcccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 23 LVVVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 23 ~~~v~L~k~-~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
++.+.|.|. ..++|++++-. .+..+||+..+..+.+|...|++++||++..
T Consensus 1246 l~~~~~~~~p~~~~~~~~~~~--~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~ 1297 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKR--TMSDGIFIRNIAQDSAASSEGTLRVGDRLVS 1297 (1332)
T ss_pred hhhheeeeccccccccccccc--CcCCceeeecccccccccccccccccceeec
Confidence 344555555 78999998744 3468999999999999999999999999863
No 53
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=81.97 E-value=2.7 Score=32.01 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=19.8
Q ss_pred CcEEEEEeC--------CCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLN--------PSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~--------~gg~A~~dG~L~~GD~ileV 76 (76)
.+++|.... .++||++.| |++||.|++|
T Consensus 105 ~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsI 140 (402)
T TIGR02860 105 KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKI 140 (402)
T ss_pred CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEE
Confidence 466775542 257887754 9999999986
No 54
>KOG1421|consensus
Probab=71.04 E-value=4.4 Score=33.51 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.-+.|..|.|+|+|++ .|.+||.++.|
T Consensus 303 gmLvV~~vL~~gpa~k--~Le~GDillav 329 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEK--KLEPGDILLAV 329 (955)
T ss_pred eeEEEEEeccCCchhh--ccCCCcEEEEE
Confidence 4577899999999997 69999999975
No 55
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=70.43 E-value=4.5 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.++|+..+..++++. |.|+.||.|..|
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~av 156 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAV 156 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEee
Confidence 589999999999987 789999999875
No 56
>KOG0606|consensus
Probab=68.92 E-value=10 Score=32.69 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=37.1
Q ss_pred EEEEecCCCcccEEEe------cCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 25 VVTLERSHTGLGISLA------GHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 25 ~v~L~k~~~gLG~si~------Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.|.+.++..++||++. |..|.--.--.|-.|.+++||.. -+|+++|-|..|
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~-agls~~DlIthv 685 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFE-AGLSAGDLITHV 685 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccc-cCCCccceeEec
Confidence 4888888889997754 55542112346778999999977 459999999865
No 57
>KOG1320|consensus
Probab=60.69 E-value=10 Score=29.67 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..++|++|.|+++++. +.++.||+|+.|
T Consensus 398 q~v~is~Vlp~~~~~~-~~~~~g~~V~~v 425 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGG-YGLKPGDQVVKV 425 (473)
T ss_pred eEEEEEEeccCCCccc-ccccCCCEEEEE
Confidence 3689999999999998 679999999865
No 58
>PRK15464 cold shock-like protein CspH; Provisional
Probab=56.40 E-value=37 Score=19.52 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEecCCCcccEEEecCCCCCCCcEEE--EEeCCCChhcccCCCCCCCEEE
Q psy18106 25 VVTLERSHTGLGISLAGHKDRTKMAVFV--CGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 25 ~v~L~k~~~gLG~si~Gg~~~~~~~I~V--~~V~~gg~A~~dG~L~~GD~il 74 (76)
+|+-....+|+||-.... . ...||| +.+.+.+. -+|++||++-
T Consensus 8 ~Vk~fn~~KGfGFI~~~~-g--~~DvFvH~s~l~~~g~----~~l~~G~~V~ 52 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSD-G--RKEVQVHISAFTPRDA----EVLIPGLRVE 52 (70)
T ss_pred EEEEEECCCCeEEEccCC-C--CccEEEEehhehhcCC----CCCCCCCEEE
Confidence 344444578999843221 1 234665 44655543 3588999863
No 59
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=56.09 E-value=7.8 Score=28.85 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=32.1
Q ss_pred cCCCcccEEEecCCCCCCC-----cEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 30 RSHTGLGISLAGHKDRTKM-----AVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 30 k~~~gLG~si~Gg~~~~~~-----~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
++..+||+-|.||-.+++. .+.|..+...-+.-+++.-++||.|+-
T Consensus 118 ~~a~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~ 168 (324)
T COG2144 118 KGARKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIF 168 (324)
T ss_pred HHHHhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEE
Confidence 4467899999999765543 344445555555566788899999875
No 60
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=53.07 E-value=18 Score=21.87 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=15.1
Q ss_pred CcEEEEEeCCCChhc--------ccC-CCCCCCEEEEC
Q psy18106 48 MAVFVCGLNPSGSAS--------KTG-SVLVGDELLEI 76 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~--------~dG-~L~~GD~ileV 76 (76)
...-|.+|.++-+.. +-| .+++||.|++|
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aI 49 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAI 49 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEE
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEE
Confidence 456777888764443 222 56899999976
No 61
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=49.79 E-value=71 Score=20.82 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred hhhhcCCCCCcEEEEEEecCCCccc-EEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 12 VKKKYGSLGPDLVVVTLERSHTGLG-ISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 12 ~~~~~~~~~~e~~~v~L~k~~~gLG-~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+.+.-+-+|.|...|-=.-++..|- ..|.|-+++ + .|.-+|+|++ ..++||+|+
T Consensus 32 Lm~aagi~p~E~V~V~Nv~NG~Rf~TYvI~G~~GS---g----~I~lNGAAAr--l~~~GD~VI 86 (126)
T TIGR00223 32 LLDAAGILENEKVDIVNVNNGKRFSTYAIAGKRGS---R----IICVNGAAAR--CVSVGDIVI 86 (126)
T ss_pred HHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCC---C----EEEeCCHHHh--cCCCCCEEE
Confidence 3444455665544333222334443 235555442 1 2566888887 468999986
No 62
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=49.17 E-value=68 Score=20.45 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=28.6
Q ss_pred hhhhcCCCCCcEEEEEEecCCCccc-EEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 12 VKKKYGSLGPDLVVVTLERSHTGLG-ISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 12 ~~~~~~~~~~e~~~v~L~k~~~gLG-~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+.+.-+-++.|...|-=.-++..|- ..|.|-+.+ + .|.-+|+|++ ..++||+|+
T Consensus 31 Ll~aagi~~~E~V~I~Nv~NG~Rf~TYvI~g~~gS---g----~I~lNGAAAr--~~~~GD~vI 85 (111)
T cd06919 31 LLEAAGILPYEKVLVVNVNNGARFETYVIPGERGS---G----VICLNGAAAR--LGQPGDRVI 85 (111)
T ss_pred HHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCC---C----EEEeCCHHHh--cCCCCCEEE
Confidence 3344444555544333222234443 235554442 1 2566888887 468999986
No 63
>KOG4407|consensus
Probab=47.01 E-value=6.5 Score=34.77 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.4
Q ss_pred cEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 49 AVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 49 ~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
-|||+.|.++|+|+.. .||.||+++.|
T Consensus 144 T~~~~eV~~n~~~~~a-~LQ~~~~V~~v 170 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYA-NLQTGDRVLMV 170 (1973)
T ss_pred hhhhhhhccCChhHHH-hhhccceeEEe
Confidence 6899999999999995 69999999875
No 64
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=46.70 E-value=80 Score=20.55 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=28.3
Q ss_pred hhhcCCCCCcEEEEEEecCCCccc-EEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 13 KKKYGSLGPDLVVVTLERSHTGLG-ISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 13 ~~~~~~~~~e~~~v~L~k~~~gLG-~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
.+.-+-++.|...|-=.-++..|- ..|.|-+.+ + .|.-+|+|++ ..++||+|+
T Consensus 33 l~aagi~p~E~V~V~Nv~NG~Rf~TYvI~g~~GS---g----~I~lNGAAAr--~~~~GD~vI 86 (126)
T PRK05449 33 LDAAGILENEKVQIVNVNNGARFETYVIAGERGS---G----VICLNGAAAR--LVQVGDLVI 86 (126)
T ss_pred HHhcCCCCCCEEEEEECCCCcEEEEEEEEcCCCC---C----EEEeCCHHHh--cCCCCCEEE
Confidence 344445555544333222234443 235554442 1 2566888887 468999986
No 65
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=44.02 E-value=30 Score=23.76 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+..+.|..|..|++|++.| +.-+++|.+|
T Consensus 121 ~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 121 GGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 4678999999999999976 7788888764
No 66
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=42.09 E-value=1.1e+02 Score=21.67 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCcEEEEEEecCCCcc--cEEEecCCCCC-CCcEEEEEeCCCC-hhcccCCCCCCCEEE
Q psy18106 20 GPDLVVVTLERSHTGL--GISLAGHKDRT-KMAVFVCGLNPSG-SASKTGSVLVGDELL 74 (76)
Q Consensus 20 ~~e~~~v~L~k~~~gL--G~si~Gg~~~~-~~~I~V~~V~~gg-~A~~dG~L~~GD~il 74 (76)
+++...|.|.-+...+ -.||+...... ...|-|+...-++ -....-.|++||+|.
T Consensus 37 pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~Lh~~lk~Gd~l~ 95 (266)
T COG1018 37 PGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNWLHDHLKVGDTLE 95 (266)
T ss_pred CCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHHHHhcCCCCCEEE
Confidence 4677777776553333 35677666543 4566677666333 333334799999975
No 67
>KOG1945|consensus
Probab=40.91 E-value=16 Score=27.77 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=41.5
Q ss_pred EEEEEEecCCCcccEEEecCCCC-----CCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 23 LVVVTLERSHTGLGISLAGHKDR-----TKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 23 ~~~v~L~k~~~gLG~si~Gg~~~-----~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
...+.+.++..|+|+++.|-... ...+|++.+..+++..+++|+..+-|...
T Consensus 100 ~~e~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~ 156 (377)
T KOG1945|consen 100 LFEVAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEV 156 (377)
T ss_pred hhhhhccCCcCCCCccccccccchhccchhhcceeeccccccccccccccccccccc
Confidence 45677888889999998883221 24699999999999999999998887654
No 68
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=37.61 E-value=15 Score=23.59 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=24.6
Q ss_pred hhhhcCCCCCcEEEEEEecCCCccc-EEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 12 VKKKYGSLGPDLVVVTLERSHTGLG-ISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 12 ~~~~~~~~~~e~~~v~L~k~~~gLG-~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+.+.-+-+|.|...|-=.-++..|- .-|.|-.++ . .|.-+|+|++ ..++||+|+
T Consensus 32 Ll~aagi~p~E~V~V~Nv~nG~Rf~TYvI~g~~GS--g-----~I~lNGaAAr--l~~~GD~vI 86 (116)
T PF02261_consen 32 LLDAAGILPYEQVQVVNVNNGERFETYVIPGERGS--G-----VICLNGAAAR--LVQVGDRVI 86 (116)
T ss_dssp HHHHCT--TTBEEEEEETTT--EEEEEEEEESTTT--T------EEEEGGGGG--CS-TT-EEE
T ss_pred HHHHcCCCcCCEEEEEECCCCcEEEEEEEEccCCC--c-----EEEECCHHHh--ccCCCCEEE
Confidence 3344445555544333222233332 235555442 1 1556788887 468999986
No 69
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=36.47 E-value=35 Score=24.57 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 52 VCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 52 V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
+..+...++|+..+ +++||+++++
T Consensus 133 ~~~v~~~s~a~~a~-l~~Gd~iv~~ 156 (375)
T COG0750 133 VGEVAPKSAAALAG-LRPGDRIVAV 156 (375)
T ss_pred eeecCCCCHHHHcC-CCCCCEEEeE
Confidence 34788999999976 9999999874
No 70
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=34.02 E-value=1.4e+02 Score=19.52 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=14.4
Q ss_pred eCCCChhcccCCCCCCCEEE
Q psy18106 55 LNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 55 V~~gg~A~~dG~L~~GD~il 74 (76)
|..+|+|++ ..++||.++
T Consensus 68 I~lNGAAAr--l~~~GD~VI 85 (126)
T COG0853 68 ICLNGAAAR--LVQVGDLVI 85 (126)
T ss_pred EEechHHHh--hCCCCCEEE
Confidence 667889987 468999976
No 71
>KOG3834|consensus
Probab=33.28 E-value=1.4e+02 Score=23.44 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=35.6
Q ss_pred CcEEEEEEecC-CCc---ccEEEecCCCC--CCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 21 PDLVVVTLERS-HTG---LGISLAGHKDR--TKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 21 ~e~~~v~L~k~-~~g---LG~si~Gg~~~--~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
-+++++++... ..+ ||++|.=.... ...--=|-+|.++++|++.|-..-.|-|+
T Consensus 76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYiv 135 (462)
T KOG3834|consen 76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIV 135 (462)
T ss_pred ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEe
Confidence 35667777655 456 89888755441 12233466799999999987444667665
No 72
>KOG3532|consensus
Probab=31.37 E-value=58 Score=27.41 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
...+-|-.|.|+.+|.+. .+.+||.|+.|
T Consensus 397 ~~~v~v~tv~~ns~a~k~-~~~~gdvlvai 425 (1051)
T KOG3532|consen 397 NRAVKVCTVEDNSLADKA-AFKPGDVLVAI 425 (1051)
T ss_pred ceEEEEEEecCCChhhHh-cCCCcceEEEe
Confidence 356788899999999995 68999999875
No 73
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=30.47 E-value=44 Score=26.29 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=32.8
Q ss_pred cEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCCh---hcccCCCCCCCEEEE
Q psy18106 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGS---ASKTGSVLVGDELLE 75 (76)
Q Consensus 22 e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~---A~~dG~L~~GD~ile 75 (76)
..+.+++.+++.=.|-++.--....+.++.|.+|..++- +..|..|++||.|+-
T Consensus 218 ~~r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R~g~~~~p~~dtvL~~GD~L~V 274 (562)
T TIGR03802 218 VGRAYRVNRASSLIGKTVGDLENLFAGRVTIERIRRDGKLLTVSPDLVLNAGDVVLV 274 (562)
T ss_pred eeEEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEECCEEEcCCCCCeeCCCCEEEE
Confidence 345666665533335554433333345788888877652 345578999999863
No 74
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=30.14 E-value=28 Score=22.01 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=9.0
Q ss_pred cCCCCCCCEEE
Q psy18106 64 TGSVLVGDELL 74 (76)
Q Consensus 64 dG~L~~GD~il 74 (76)
+|.|+.||.|+
T Consensus 24 ~GtL~~GD~Iv 34 (110)
T cd03703 24 DGTLREGDTIV 34 (110)
T ss_pred CCeEecCCEEE
Confidence 46799999986
No 75
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=30.05 E-value=1.1e+02 Score=21.68 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=26.2
Q ss_pred CcccEEEecCCCCC----CCcEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~~----~~~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
+-+|+.+.||.... ...+.+..+.+....-...+.++||.|+-
T Consensus 109 ~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~a~~Gd~I~l 155 (317)
T TIGR01379 109 KQYGVPLVGGDTVSSPELVVTVTAIGEAPKGRALLRSGAKPGDLVFV 155 (317)
T ss_pred HHcCCeEECccCCCCCCcEEEEEEEEEeCCCCceecCCCCCCCEEEE
Confidence 45788999987531 23445555555543223345789999874
No 76
>COG2985 Predicted permease [General function prediction only]
Probab=29.99 E-value=1.9e+02 Score=23.19 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=30.7
Q ss_pred EEEEEEecCCCcc-cEEEecCCCCCCCcEEEEEeCCCCh---hcccCCCCCCCEEEEC
Q psy18106 23 LVVVTLERSHTGL-GISLAGHKDRTKMAVFVCGLNPSGS---ASKTGSVLVGDELLEI 76 (76)
Q Consensus 23 ~~~v~L~k~~~gL-G~si~Gg~~~~~~~I~V~~V~~gg~---A~~dG~L~~GD~ileV 76 (76)
...|.+.+....+ |.++.-=..-.+..||++++..++. ++-|--+|.||+|.-|
T Consensus 202 l~~i~~~~~~p~~~g~~l~d~p~l~~~~v~~sRikrd~~~~~p~~~~~i~~Gd~l~lV 259 (544)
T COG2985 202 LPVIRAYVVNPNLDGLNLRDLPILRQEGVYCSRIKRDGILAVPDPDTIIQVGDELHLV 259 (544)
T ss_pred cceeeEEecCCCccccchhhcccccCCceEEEEEecCCeeecCCCCcccccCcEEEec
Confidence 4556665553222 3333211112246899999998842 3344558889988643
No 77
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=29.88 E-value=25 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=18.6
Q ss_pred cEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 49 AVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 49 ~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
.+....+++.+.|. ...|++||.+|.
T Consensus 39 ~v~~~~iI~~~~~~-~~~L~~GD~VLA 64 (124)
T PF15057_consen 39 EVPISDIIALSDAM-RHSLQVGDKVLA 64 (124)
T ss_pred EeChHHeEEccCcc-cCcCCCCCEEEE
Confidence 34445566766666 578999999985
No 78
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=28.89 E-value=14 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.327 Sum_probs=7.5
Q ss_pred cCCCCCCCEEEE
Q psy18106 64 TGSVLVGDELLE 75 (76)
Q Consensus 64 dG~L~~GD~ile 75 (76)
+-.|++||.|+-
T Consensus 45 ~~~l~~gD~l~v 56 (71)
T PF02080_consen 45 DTVLQAGDILIV 56 (71)
T ss_dssp T-BE-TTEEEEE
T ss_pred CCEECCCCEEEE
Confidence 567888998863
No 79
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=28.33 E-value=63 Score=23.46 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=25.2
Q ss_pred CcccEEEecCCCCCC----CcEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDRTK----MAVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~----~~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
+-+|+.|.||..... ..+.+..+.+....-.....++||.|+-
T Consensus 131 ~~~g~~lvGGdT~~~~~~~i~~t~~G~~~~~~~i~~~~ak~GD~Iil 177 (347)
T TIGR00476 131 REAGTSLTGGHTILNPWPVFGGAVTGVCPEEEVITPSGAQVGDVLIL 177 (347)
T ss_pred HHcCCCeEeeeeecCCcCEEEEEEEEEECccceecCCCCCCCCEEEE
Confidence 456788888876321 2344455554332233355899999873
No 80
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=28.24 E-value=74 Score=22.43 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=25.3
Q ss_pred CcccEEEecCCCCC--C--CcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 33 TGLGISLAGHKDRT--K--MAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 33 ~gLG~si~Gg~~~~--~--~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+-+|+.|.||.... . ..+++..+.+....-.....++||.|+
T Consensus 124 ~~~g~~ivGGdt~~~~~~~i~~t~~G~~~~~~~~~~~~a~~GD~I~ 169 (287)
T cd02195 124 REAGAVLVGGHTIEGPEPKYGLSVTGLVHPNKILRNSGAKPGDVLI 169 (287)
T ss_pred HHcCCcEEeeeeccCCCcEEEEEEEEEEcchheecCCCCCCCCEEE
Confidence 45778888887632 1 234445555544333345688999987
No 81
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=28.17 E-value=1.2e+02 Score=17.08 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCCcccEEEecCCCCCCCcEEE--EEeCCCChhcccCCCCCCCEEE
Q psy18106 31 SHTGLGISLAGHKDRTKMAVFV--CGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 31 ~~~gLG~si~Gg~~~~~~~I~V--~~V~~gg~A~~dG~L~~GD~il 74 (76)
..+|+||--.- .. ...||+ +.+...+. -+|++||++-
T Consensus 14 ~~kGfGFI~~~-~g--~~dvfvH~s~l~~~g~----~~l~~G~~V~ 52 (70)
T PRK10354 14 ADKGFGFITPD-DG--SKDVFVHFSAIQNDGY----KSLDEGQKVS 52 (70)
T ss_pred CCCCcEEEecC-CC--CccEEEEEeeccccCC----CCCCCCCEEE
Confidence 35799984321 11 234555 44554442 3588898763
No 82
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=28.14 E-value=2e+02 Score=19.64 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCcEEEEEEecCCCc--ccEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEE
Q psy18106 20 GPDLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73 (76)
Q Consensus 20 ~~e~~~v~L~k~~~g--LG~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~i 73 (76)
+++...+.+.-.... =-+||+...+....-++|+.+..|-....-..+++||+|
T Consensus 33 pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~l~~Gd~v 88 (248)
T PRK10926 33 AGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAALKPGDEV 88 (248)
T ss_pred CCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHhCCCCCEE
Confidence 466666666422111 135565443322344566666333332222369999987
No 83
>PRK05326 potassium/proton antiporter; Reviewed
Probab=27.49 E-value=76 Score=24.62 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=18.7
Q ss_pred cEEEEEeCCCC---hhcccCCCCCCCEEEE
Q psy18106 49 AVFVCGLNPSG---SASKTGSVLVGDELLE 75 (76)
Q Consensus 49 ~I~V~~V~~gg---~A~~dG~L~~GD~ile 75 (76)
++.|..|.+++ ....+.+|++||+++-
T Consensus 440 ~~~i~~v~R~g~~~~p~~~t~L~~GD~l~l 469 (562)
T PRK05326 440 GALIALIIRDGKLLVPTGSTRLKAGDVLLV 469 (562)
T ss_pred CcEEEEEEECCEEeCCCCCCeECCCCEEEE
Confidence 55666666654 3456788999999863
No 84
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=26.80 E-value=32 Score=19.72 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=10.5
Q ss_pred cccCCCCCCCEEEE
Q psy18106 62 SKTGSVLVGDELLE 75 (76)
Q Consensus 62 ~~dG~L~~GD~ile 75 (76)
.+.+++++||.++-
T Consensus 61 ~~~g~~~~Gd~vl~ 74 (90)
T PF08541_consen 61 LEEGRIKPGDRVLL 74 (90)
T ss_dssp HHTTSSCTTEEEEE
T ss_pred HHcCCCCCCCEEEE
Confidence 44578899998874
No 85
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=26.53 E-value=2.4e+02 Score=20.43 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCCcc----cEEEecCCCCCCCcEEEEEeCCCChhc--ccCCCCCCCEE
Q psy18106 20 GPDLVVVTLERSHTGL----GISLAGHKDRTKMAVFVCGLNPSGSAS--KTGSVLVGDEL 73 (76)
Q Consensus 20 ~~e~~~v~L~k~~~gL----G~si~Gg~~~~~~~I~V~~V~~gg~A~--~dG~L~~GD~i 73 (76)
+++...|.+..+..+. -+||+...+.....+.|+.. ++|... ....+++||+|
T Consensus 187 pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~-~~G~~S~~L~~~l~~Gd~v 245 (399)
T PRK13289 187 PGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKRE-AGGKVSNYLHDHVNVGDVL 245 (399)
T ss_pred CCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEEC-CCCeehHHHhhcCCCCCEE
Confidence 4555566654322121 25665433222345666655 445432 22348999986
No 86
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=26.08 E-value=2e+02 Score=18.97 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCCcEEEEEEecCCCcccEEEecCCCCCCCcEEEEEeCCCChhc-ccCCCCCCCEEE
Q psy18106 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSAS-KTGSVLVGDELL 74 (76)
Q Consensus 18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~~~~~~I~V~~V~~gg~A~-~dG~L~~GD~il 74 (76)
-.++....+.+......--+||+.........++|+.+..|.... ..-.+++||.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~l~~G~~v~ 88 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDRAQPGDRLT 88 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCCCCeEEEEEEEcCCCcchhhHHhccCCCCEEE
Confidence 345666666653221122455554332234566666654432222 222488999863
No 87
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=25.75 E-value=1.3e+02 Score=16.87 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=21.7
Q ss_pred EEEecCCCcccEEEecCCCCCCCcEEEE--EeCCCChhcccCCCCCCCEEE
Q psy18106 26 VTLERSHTGLGISLAGHKDRTKMAVFVC--GLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 26 v~L~k~~~gLG~si~Gg~~~~~~~I~V~--~V~~gg~A~~dG~L~~GD~il 74 (76)
|+-.-..+|+||--. -. ....||++ .+...+. .+|++||++-
T Consensus 8 Vk~f~~~kGyGFI~~-~~--g~~dvfvH~s~l~~~g~----~~l~~G~~V~ 51 (69)
T PRK09507 8 VKWFNESKGFGFITP-ED--GSKDVFVHFSAIQTNGF----KTLAEGQRVE 51 (69)
T ss_pred EEEEeCCCCcEEEec-CC--CCeeEEEEeecccccCC----CCCCCCCEEE
Confidence 333334679998322 11 12346664 3444332 3578888763
No 88
>KOG4407|consensus
Probab=25.61 E-value=1e+02 Score=27.90 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred EEEEEecCCCcccEEEe--------------------cCCC----CCCCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 24 VVVTLERSHTGLGISLA--------------------GHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 24 ~~v~L~k~~~gLG~si~--------------------Gg~~----~~~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
.+|.+.|.+.||||++. +|.. .+...++|.++..++|+...| +..+|.|.-|
T Consensus 48 ~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~i 123 (1973)
T KOG4407|consen 48 LIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGI 123 (1973)
T ss_pred eEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeee
Confidence 55777777899999863 2222 123578999999998888766 7788887644
No 89
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=25.07 E-value=37 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=8.7
Q ss_pred cCCCCCCCEEE
Q psy18106 64 TGSVLVGDELL 74 (76)
Q Consensus 64 dG~L~~GD~il 74 (76)
+|.|++||.|+
T Consensus 24 ~GtL~~Gd~iv 34 (95)
T cd03701 24 NGTLKKGDVIV 34 (95)
T ss_pred cCeEecCCEEE
Confidence 36799999886
No 90
>PRK00943 selenophosphate synthetase; Provisional
Probab=25.06 E-value=1.1e+02 Score=22.38 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=25.3
Q ss_pred CcccEEEecCCCC--CC--CcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 33 TGLGISLAGHKDR--TK--MAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 33 ~gLG~si~Gg~~~--~~--~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+-+|+.|.||-.. +. ..+.+..+.+....-.....++||.|+
T Consensus 130 ~~~gv~lvGGdT~~~~~~~i~~t~~G~~~~~~~l~~~~ak~GD~Ii 175 (347)
T PRK00943 130 RQAGIPLAGGHSIDAPEPIFGLAVTGVVPPERVKRNATAQAGDKLF 175 (347)
T ss_pred HHcCCceecccccCCCCceEEEEEEEEEcCCceeeCCCCCCCCEEE
Confidence 4578889988763 11 233444444443333445689999987
No 91
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=23.55 E-value=1.2e+02 Score=24.01 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=31.3
Q ss_pred EEEecCCCcccEEEecCCC------CCCCcEEEEE-----------eCCCChhcccCCCCCCCEEEEC
Q psy18106 26 VTLERSHTGLGISLAGHKD------RTKMAVFVCG-----------LNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 26 v~L~k~~~gLG~si~Gg~~------~~~~~I~V~~-----------V~~gg~A~~dG~L~~GD~ileV 76 (76)
.++.-+.+-|-+++.|++- .+...+.|.. |..-++.+-|-.|++||+++-|
T Consensus 439 ~t~r~~dg~l~lt~~Ga~~l~~~~~~p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv 506 (540)
T TIGR00432 439 CTMRASDGLLVLGAEGAVRLHKGTDYPAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIV 506 (540)
T ss_pred EEEEcCCCeEEeCHHHHHHHHhcCCCCceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEE
Confidence 3443335566778888732 2234555533 4444566777889999998854
No 92
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=22.80 E-value=2.3e+02 Score=18.85 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=29.0
Q ss_pred CCCcEEEEEEecC-CCcc--cEEEecCCCCCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 19 LGPDLVVVTLERS-HTGL--GISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 19 ~~~e~~~v~L~k~-~~gL--G~si~Gg~~~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
.++....+.+... ...+ -+|++...+.....+.|+.+..|.....-..+++||.|.
T Consensus 26 ~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l~~Gd~v~ 84 (241)
T cd06195 26 QAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPGDTIY 84 (241)
T ss_pred CCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcCCCCCEEE
Confidence 4566666666432 1112 456654433234456666654443333333688999864
No 93
>PRK03818 putative transporter; Validated
Probab=22.68 E-value=1.1e+02 Score=23.99 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=26.7
Q ss_pred cEEEecCCCCCCCcEEEEEeCCCCh---hcccCCCCCCCEEEE
Q psy18106 36 GISLAGHKDRTKMAVFVCGLNPSGS---ASKTGSVLVGDELLE 75 (76)
Q Consensus 36 G~si~Gg~~~~~~~I~V~~V~~gg~---A~~dG~L~~GD~ile 75 (76)
|-++.--.-....+++|.+|..++. +..|-+|+.||.|+-
T Consensus 303 GkTL~eL~~r~~~Gv~VlaI~R~g~~l~~~~d~~Lq~GD~LlV 345 (552)
T PRK03818 303 GKKLRDLHLKNKYGVVISRLNRAGVELVASPDLSLQFGDILNL 345 (552)
T ss_pred CCcHHHhcccccCCeEEEEEeECCeecCCCCCCEEecCCEEEE
Confidence 4444433333467889998877553 245778999999874
No 94
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=22.65 E-value=1.5e+02 Score=19.68 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=25.0
Q ss_pred CcccEEEecCCCCC-------C--CcEEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDRT-------K--MAVFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~~-------~--~~I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
+-+|+.+.||.... . ..+.+..+.+....-+....++||.|+-
T Consensus 69 ~~~gi~ivgG~t~~~~~~~~~~~~i~~t~~G~~~~~~~~~~~~~~~Gd~lv~ 120 (222)
T cd00396 69 NQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSGARPGDVLIL 120 (222)
T ss_pred HHcCCeEeceeeEEccCCcCCCceEEEEEEEEecCCccccccCCCCCCEEEE
Confidence 45778888887631 1 2334444555444333345789999874
No 95
>PRK14105 selenophosphate synthetase; Provisional
Probab=22.54 E-value=1.5e+02 Score=21.48 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=24.3
Q ss_pred CcccEEEecCCCCCC----CcEEEEEeCCC-ChhcccCCCCCCCEEE
Q psy18106 33 TGLGISLAGHKDRTK----MAVFVCGLNPS-GSASKTGSVLVGDELL 74 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~----~~I~V~~V~~g-g~A~~dG~L~~GD~il 74 (76)
+-+|+.|.||..... ..+.|..+-+. .+..+ ...++||.|+
T Consensus 127 ~~~gv~lvGGdT~~~~~~~l~~svtg~g~~~~~i~r-~ga~~GD~I~ 172 (345)
T PRK14105 127 RENDTTIIGGHTILNPWPLIGGAVTGVGKEEDILTK-AGAKEGDVLI 172 (345)
T ss_pred HHhCCEEEeeeeccCCCCEEEEEEEEEEcccceeeC-CCCCCCCEEE
Confidence 456788888876321 12245555543 33333 5589999987
No 96
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=22.36 E-value=1.2e+02 Score=21.48 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred CcccEEEecCCCCCC----------CcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 33 TGLGISLAGHKDRTK----------MAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~----------~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
+.+|+.|.||..... ..+.+..+.+....-.....++||.|+
T Consensus 93 ~~~gi~ivGGdt~~~~~~~~~~~~~isvt~iG~~~~~~~~~~~~a~~Gd~I~ 144 (297)
T cd02196 93 RQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDGSKIKPGDVLI 144 (297)
T ss_pred HHcCCeEeeecceEccCcccCCceeEEEEEEEEEeccccccccCCCCCCEEE
Confidence 457788888875311 223344444443333334578899987
No 97
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=22.32 E-value=1.5e+02 Score=21.40 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=24.2
Q ss_pred CcccEEEecCCCCCCC--------c--EEEEEeCCCChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDRTKM--------A--VFVCGLNPSGSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~~--------~--I~V~~V~~gg~A~~dG~L~~GD~ile 75 (76)
+-+|+.|.||.-.... . +.+..+.+....-.....++||.|+-
T Consensus 125 ~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~~~~~~~~~a~~GD~i~l 177 (332)
T TIGR00878 125 KQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEKVKPGDVLIG 177 (332)
T ss_pred HHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcCccccCccCCCCCCEEEE
Confidence 4578888888763111 1 22334444433333355789999863
No 98
>KOG2921|consensus
Probab=22.24 E-value=1.1e+02 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCcEEEEEeCCCChhcccCCCCCCCEEEEC
Q psy18106 47 KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76 (76)
Q Consensus 47 ~~~I~V~~V~~gg~A~~dG~L~~GD~ileV 76 (76)
..++.|..|...+|+--.-.|.+||+|.++
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsl 248 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSL 248 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEec
Confidence 357888889888888766679999999764
No 99
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=22.08 E-value=51 Score=20.89 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=14.1
Q ss_pred ChhcccCCCCCCCEEEEC
Q psy18106 59 GSASKTGSVLVGDELLEI 76 (76)
Q Consensus 59 g~A~~dG~L~~GD~ileV 76 (76)
-..|+-|+|++||.++-|
T Consensus 67 ~v~HR~G~l~vGe~~v~i 84 (124)
T cd00756 67 AIIHRVGRLPPGEAIVLV 84 (124)
T ss_pred EEEEEEcccCCCCEEEEE
Confidence 356788999999998753
No 100
>PRK03760 hypothetical protein; Provisional
Probab=21.80 E-value=59 Score=20.43 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=18.0
Q ss_pred CcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 48 MAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 48 ~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
..-||-.+..|-++.. .+++||+|.
T Consensus 89 ~a~~VLEl~aG~~~~~--gi~~Gd~v~ 113 (117)
T PRK03760 89 PARYIIEGPVGKIRVL--KVEVGDEIE 113 (117)
T ss_pred cceEEEEeCCChHHHc--CCCCCCEEE
Confidence 4568888877765543 499999973
No 101
>PRK02268 hypothetical protein; Provisional
Probab=21.48 E-value=95 Score=20.41 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=13.1
Q ss_pred EeCCCChhcccCCCCCCCEEE
Q psy18106 54 GLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 54 ~V~~gg~A~~dG~L~~GD~il 74 (76)
+|.++=.|.. .|+++||.|+
T Consensus 24 qv~hgK~apl-~RmkpGD~iv 43 (141)
T PRK02268 24 QVCHGKAAPL-RRMKPGDWII 43 (141)
T ss_pred EeCCCccchh-hcCCCCCEEE
Confidence 4544444433 6799999987
No 102
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=20.97 E-value=1.3e+02 Score=21.55 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=23.4
Q ss_pred CcccEEEecCCCCCC--------C--cEEEEEeCC-CChhcccCCCCCCCEEE
Q psy18106 33 TGLGISLAGHKDRTK--------M--AVFVCGLNP-SGSASKTGSVLVGDELL 74 (76)
Q Consensus 33 ~gLG~si~Gg~~~~~--------~--~I~V~~V~~-gg~A~~dG~L~~GD~il 74 (76)
+.+|+.|.||.-... . .+.+..+.+ +.+..+ ...++||.|+
T Consensus 125 ~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~~~~~~r-~~a~~GD~I~ 176 (327)
T PRK05385 125 EQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDG-SKVKEGDVLI 176 (327)
T ss_pred HHcCCeEeCccceECCCcccCCCeeEEEEEEEEEecccccCc-CCCCCCCEEE
Confidence 467888998875211 1 223334333 333334 4579999987
No 103
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=20.87 E-value=1.8e+02 Score=20.27 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=25.8
Q ss_pred CcccEEEecCCCCC----CCcEEEEEeCCC-ChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDRT----KMAVFVCGLNPS-GSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~~----~~~I~V~~V~~g-g~A~~dG~L~~GD~ile 75 (76)
+-+|+.+.||.... ...+.+..+.+. .+..+. ..++||.|+-
T Consensus 108 ~~~g~~liGGdt~~~~~~~i~vt~iG~~~~~~~~~~~-~a~~GD~I~l 154 (291)
T cd02194 108 DRYGVPLVGGDTTSGSELVISVTALGEVEKGKPLRRS-GAKPGDLLYV 154 (291)
T ss_pred HHcCCeEEcccCCCCCCeEEEEEEEEecCCCCceecC-CCCCCCEEEE
Confidence 45788888887632 234555555554 344453 4689999864
No 104
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=20.85 E-value=2.9e+02 Score=19.29 Aligned_cols=55 Identities=11% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCcEEEEEEecCCCcccEEEecCCC-CCCCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 18 SLGPDLVVVTLERSHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 18 ~~~~e~~~v~L~k~~~gLG~si~Gg~~-~~~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
..|+++..+.+.......-+||+.-.. .....+.|+.+-. +.... .++++||+|+
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk~~G~-~T~~L-~~l~~Gd~v~ 83 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQAVGK-STRKL-AELKEGDSIL 83 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEEeCCc-HHHHH-hcCCCCCEEe
Confidence 346888888774222223467764322 2235667766522 23333 3799999974
No 105
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=20.42 E-value=66 Score=23.68 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.2
Q ss_pred hhcccCCCCCCCEEEE
Q psy18106 60 SASKTGSVLVGDELLE 75 (76)
Q Consensus 60 ~A~~dG~L~~GD~ile 75 (76)
.|+++|.|++|+.|+|
T Consensus 52 ~Ae~~G~l~pG~tIVE 67 (300)
T COG0031 52 DAEKRGLLKPGGTIVE 67 (300)
T ss_pred HHHHcCCCCCCCEEEE
Confidence 5788899999999987
No 106
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=20.37 E-value=51 Score=25.15 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=13.8
Q ss_pred hhcccCCCCCCCEEEEC
Q psy18106 60 SASKTGSVLVGDELLEI 76 (76)
Q Consensus 60 ~A~~dG~L~~GD~ileV 76 (76)
+++.-|-|++||++|.|
T Consensus 97 ~~aLfg~LRpgDell~i 113 (416)
T COG4100 97 ACALFGILRPGDELLYI 113 (416)
T ss_pred HHHHHhccCCCCeEEEe
Confidence 45667999999999864
No 107
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=20.27 E-value=1.3e+02 Score=21.14 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=22.8
Q ss_pred CcccEEEecCCCC---C--C----CcEEEEEeCCC-ChhcccCCCCCCCEEEE
Q psy18106 33 TGLGISLAGHKDR---T--K----MAVFVCGLNPS-GSASKTGSVLVGDELLE 75 (76)
Q Consensus 33 ~gLG~si~Gg~~~---~--~----~~I~V~~V~~g-g~A~~dG~L~~GD~ile 75 (76)
+-+|+.|.||.-. . . ..+.+..+.+. -...+ ...++||.|+-
T Consensus 107 ~~~g~~ivGGdt~~~~~~~~~~~~i~~t~~G~~~~~~~~~r-~~a~~GD~i~v 158 (293)
T cd02197 107 REAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISP-SNIRPGDKIIV 158 (293)
T ss_pred HHcCCEEEeceeEeccCCccCceEEEEEEEEEEcCCccccc-cCCCCCCEEEE
Confidence 3467888888752 1 1 12233444443 23333 34689999863
No 108
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=20.17 E-value=1.4e+02 Score=22.58 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=23.1
Q ss_pred cccEEEecCCCCC----------CCcEEEEEeCCCChhcccCCCCCCCEEE
Q psy18106 34 GLGISLAGHKDRT----------KMAVFVCGLNPSGSASKTGSVLVGDELL 74 (76)
Q Consensus 34 gLG~si~Gg~~~~----------~~~I~V~~V~~gg~A~~dG~L~~GD~il 74 (76)
-+|+.+.||.... ....++..+.+....-.....++||.|+
T Consensus 171 ~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~~~akpGD~Ii 221 (379)
T PLN02557 171 QSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKNIVAGDVLI 221 (379)
T ss_pred HhCCEEEeecceEccCcccCCceeEEEEEEEEEecccccccccCCCCCEEE
Confidence 5688888887521 1223334443333222234689999987
Done!