RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18106
(76 letters)
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 74.8 bits (184), Expect = 2e-19
Identities = 35/75 (46%), Positives = 54/75 (72%)
Query: 2 SSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSA 61
SS F+ K++++Y L +L ++ LE+ GLG+SLAG+KDR++M++FV G+NP G A
Sbjct: 5 SSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPA 64
Query: 62 SKTGSVLVGDELLEI 76
+ G + +GDELLEI
Sbjct: 65 AADGRMRIGDELLEI 79
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.1 bits (133), Expect = 5e-12
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GS G +V +++S LGI++ G + + + + GSA G + VG +LE+
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 56.8 bits (136), Expect = 2e-11
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ +TLER ++GLG S+AG D ++F+ + P G+A++ G + V D +L +
Sbjct: 59 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 117
Score = 51.8 bits (123), Expect = 1e-09
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + + R TGLG ++ G +D +F+ + G A +G + GD++L +
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV 359
Score = 34.1 bits (77), Expect = 0.002
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 27 TLERSHTGLGISLAGHKDRT----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
L + GLG S+AG +++V + G+A K G + +GD++L +
Sbjct: 159 KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 212
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 53.1 bits (128), Expect = 3e-11
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S G + V L+R LGI+++G ++ + + L G A +TG++ +GD +L I
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEE-PFDPIIISSLTKGGLAERTGAIHIGDRILAI 58
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 53.2 bits (128), Expect = 4e-11
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V + + GLG SLAG D + V + P+G AS+ G++ G+E+L I
Sbjct: 18 VTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 52.7 bits (127), Expect = 6e-11
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
D + D V LER G G SL G ++ M ++V L G A ++G +
Sbjct: 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGRE-YNMDLYVLRLAEDGPAERSGKM 68
Query: 68 LVGDELLEI 76
+GDE+LEI
Sbjct: 69 RIGDEILEI 77
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 51.9 bits (125), Expect = 8e-11
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S+G + + + + TGLG+S+ G D A+ + + G+A K G + GD++LE+
Sbjct: 1 SMGCETTI-EISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEV 58
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 50.3 bits (121), Expect = 3e-10
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D+ V L ++ LGIS+ G + ++V + P G+A G + GD +L +
Sbjct: 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 50.4 bits (121), Expect = 4e-10
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
G + + L + TGLG ++ G +D +FV + G A +G + GD +L +
Sbjct: 10 GGDAREPRKIILHKGSTGLGFNIVGGED--GEGIFVSFILAGGPADLSGELRRGDRILSV 67
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 49.6 bits (119), Expect = 7e-10
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D V +E+ G G S+ G ++ KM ++V L G A + G + VGD+++EI
Sbjct: 11 DYFTVDMEKGAKGFGFSIRGGRE-YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 49.6 bits (119), Expect = 7e-10
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GS G + V L R +G G + G + + + + GSA + G + GDEL+ +
Sbjct: 4 GSSGYKELDVHLRRMESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYV 62
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 49.7 bits (119), Expect = 1e-09
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + + R TGLG ++ G +D +F+ + G A +G + GD++L +
Sbjct: 13 REPRRIVIHRGSTGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILSV 66
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 49.3 bits (118), Expect = 1e-09
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ + + +GLG+S+ G KD A+ + + G+A++ G + GD++LE+
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEV 71
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.3 bits (118), Expect = 1e-09
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 16 YGSLGPDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
Y P +TLER GLG S+ G + ++V + G+AS+ G + GD++
Sbjct: 19 YFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQI 78
Query: 74 LEI 76
+ +
Sbjct: 79 IAV 81
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 48.8 bits (117), Expect = 2e-09
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V VTL + G + G + V + + P G A + G++ GD LL +
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 48.9 bits (117), Expect = 2e-09
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 14 KKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
KK +GP V+ L+ H GLGIS+ G K+ + + + ++P A + G + VGD +
Sbjct: 2 KKSQGVGPIRKVLLLKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 74 LEI 76
L +
Sbjct: 61 LAV 63
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 50.1 bits (120), Expect = 2e-09
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDEL 73
S + +TLER ++GLG S+AG D ++F+ + P G+A++ G + V D +
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60
Query: 74 LEI 76
L +
Sbjct: 61 LFV 63
Score = 41.7 bits (98), Expect = 3e-06
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 27 TLERSHTGLGISLAGHKDRTKMA----VFVCGLNPSGSASKTGSVLVGDELLEI 76
L + GLG S+AG + ++V + G+A K G + +GD++L +
Sbjct: 105 KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 158
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 48.4 bits (116), Expect = 2e-09
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V L ++ GLGI++AG+ K +FV + S + G + +GD+++ +
Sbjct: 2 MSETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 48.9 bits (117), Expect = 2e-09
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D L+E+
Sbjct: 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 48.5 bits (116), Expect = 2e-09
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGD 71
GS G +L V LE+ GLGIS+ G K+ +FV + G+A + G + V D
Sbjct: 4 GSSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 63
Query: 72 ELLEI 76
+++E+
Sbjct: 64 QIVEV 68
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 48.1 bits (115), Expect = 2e-09
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ V L + GLG S+AG ++++ + G+A K G + +GD LL +
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 48.0 bits (115), Expect = 3e-09
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VV L ++ GLG ++ G K+ +++ + P G A + G + GD+LL +
Sbjct: 8 VVELPKTDEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSV 58
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 48.7 bits (116), Expect = 3e-09
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ VTLE+ GLG SL G K + + + ++ ++ +V GDE+L++
Sbjct: 28 ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQL 85
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 48.6 bits (116), Expect = 3e-09
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 5 GNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKT 64
G + L + L +S G G ++ G + + + L G A+
Sbjct: 1 GAMGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALD 59
Query: 65 GSVLVGDELLEI 76
G + GD ++ +
Sbjct: 60 GKMETGDVIVSV 71
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 47.7 bits (114), Expect = 3e-09
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R +GLG ++ G D ++V + +G+A+ G + GD++L +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 47.7 bits (114), Expect = 3e-09
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + + R TGLG ++ G +F+ + G A +G + GD++L +
Sbjct: 10 REPRRIVIHRGSTGLGFNIVG--GEXGEGIFISFILAGGPADLSGELRKGDQILSV 63
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 49.5 bits (118), Expect = 4e-09
Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDR-TKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ L+ +G+ + G K+ + + P G + + + D + +I
Sbjct: 18 KKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDI 73
Score = 38.7 bits (90), Expect = 3e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 26 VTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L + LG+SL+ ++ + + L + GD + +
Sbjct: 117 VDLMKKAGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKF 164
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex,
PDZ tandem, alternative splicing, cell junction,
cytoplasm; 2.30A {Rattus norvegicus}
Length = 200
Score = 49.3 bits (118), Expect = 4e-09
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VV +++ T LG++++G D+ V L G A+++ + VGD + +
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDK-DGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Score = 44.3 bits (105), Expect = 2e-07
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 26 VTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VTL + G + G + V + + P G A + G++ GD LL +
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 47.7 bits (114), Expect = 4e-09
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ + L + GLG S+AG +++V + G+A K G + +GD+LL +
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.3 bits (113), Expect = 5e-09
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRT-KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L R + G G++L G +D + V GL G A + G + VGD +L I
Sbjct: 9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 47.8 bits (114), Expect = 5e-09
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
SS + L + TL++S+ G G ++ G + + V + P G A++ G +
Sbjct: 5 SSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKM 63
Query: 68 LVGDELLEI 76
GD ++ I
Sbjct: 64 ETGDVIVYI 72
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 47.3 bits (113), Expect = 6e-09
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 25 VVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L RS GLG S+AG K T +FV + G+A + G++ VGD +L I
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 47.4 bits (113), Expect = 6e-09
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V + + L ++L G D V V + G+A + G V+ GDE++ I
Sbjct: 19 VRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 47.4 bits (113), Expect = 8e-09
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 PDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++V + ++ + LGISL R K + + + P+ ++G++ GD +L I
Sbjct: 14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSI 70
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 46.5 bits (111), Expect = 8e-09
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
L +S G G ++ G + + + L G A+ G + GD ++ +
Sbjct: 4 TKLRKSSRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 46.6 bits (111), Expect = 1e-08
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
+ V LER +GLG+ L +++ L P A+ G + +GD +LE
Sbjct: 4 GSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63
Query: 76 I 76
+
Sbjct: 64 V 64
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 46.6 bits (111), Expect = 1e-08
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKD---RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P++ +V L + GLG S+ ++D T+ + + L G A ++G +L GD L+ +
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 46.7 bits (111), Expect = 1e-08
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 24 VVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R +GLG ++ G D ++V + +G+A+ G + GD++L +
Sbjct: 19 EEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 46.2 bits (110), Expect = 1e-08
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 26 VTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LER ++GLG S+AG D +F+ + P G+A+ G + V D +L +
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 46.2 bits (110), Expect = 1e-08
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRT-------KMAVFVCGLNPSGSASKTGSVLVGDEL 73
+ + L R LG ++ G + +FV + SG A+K G + + D +
Sbjct: 7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66
Query: 74 LEI 76
+E+
Sbjct: 67 IEV 69
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 47.6 bits (113), Expect = 2e-08
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDELLE 75
+L V LE+ GLGIS+ G K+ +FV + G+A + G + V D L+E
Sbjct: 79 LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 138
Query: 76 I 76
+
Sbjct: 139 V 139
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 45.7 bits (109), Expect = 2e-08
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L R TG G + G + +++ + P G+A G + GDEL+ +
Sbjct: 5 DIFLWRKETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISV 55
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 45.7 bits (109), Expect = 2e-08
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 22 DLVVVTLERSHTG--LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ V L + +G LGI L D + VF+ L G A++ G + D +L I
Sbjct: 3 EILQVALHKRDSGEQLGIKLVRRTD--EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 45.4 bits (108), Expect = 2e-08
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 20 GPDLV-VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
G D V ++ L ++ LG ++ + A+ V + G+A ++G + VGDEL E+
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKKDEQ--TGAIIVARIMRGGAADRSGLIHVGDELREV 56
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 45.8 bits (109), Expect = 3e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDR-------TKMAVFVCGLNPSGSASKTGSVLVGDEL 73
D+ V L ++ LGIS+ D+ ++V + P G+A G + GD +
Sbjct: 8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 74 LEI 76
L +
Sbjct: 68 LAV 70
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 45.4 bits (108), Expect = 3e-08
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 24 VVVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V + E+ + LGIS++G +D ++V L P +A+ G + D++L +
Sbjct: 16 VELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 46.7 bits (111), Expect = 3e-08
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 21 PDLVVVTLERS-HTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V L TG GI L G T+ + + A + G + +GD ++ I
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Score = 42.5 bits (100), Expect = 1e-06
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 25 VVTLERSHTGLGISLAGHKDRTK-MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V ++ LGI+++ R + + + A +TG++ +GD+LL I
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 163
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 45.4 bits (108), Expect = 4e-08
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 1 MSSFGNFSS--DKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKD----RTKMAVFVCG 54
M + SS D + +V + L + GLG S+AG +++V
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTK 60
Query: 55 LNPSGSASKTGSVLVGDELLEI 76
+ G+A K G + VGD LL +
Sbjct: 61 IIDGGAAQKDGRLQVGDRLLMV 82
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 45.1 bits (107), Expect = 5e-08
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V L +GLG + G K V V + P G A + G + GD +L+I
Sbjct: 15 HVEEVELINDGSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKI 66
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 45.0 bits (107), Expect = 5e-08
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ VTL++ G+G+S+ K + K+ ++V + G+A G + GD+LL +
Sbjct: 10 PEIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 45.1 bits (107), Expect = 6e-08
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
+ G + V L + GLG S+ G + R ++ +FV + A + G + D++L
Sbjct: 16 AQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQIL 75
Query: 75 EI 76
I
Sbjct: 76 AI 77
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 44.2 bits (105), Expect = 6e-08
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 21 PDLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VT+ ++ GLGIS+ G ++ KM + + + +A +T ++ VGD +L +
Sbjct: 3 LQRRRVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSV 58
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 44.8 bits (106), Expect = 6e-08
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 22 DLVVVTL-ERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ V L +R GLG + K V + L G+A ++G + GD +L +
Sbjct: 1 NVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV 54
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 44.7 bits (106), Expect = 7e-08
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 20 GPDLVVVTLERS-HTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+++ VTL + LGIS+ G + R +++ + G+ + G + GD LL++
Sbjct: 3 HMNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 44.4 bits (105), Expect = 8e-08
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V+ L+ H GLGIS+ G K+ + + + ++P A + G + VGD +L +
Sbjct: 30 KVLLLKEDHEGLGISITGGKE-HGVPILISEIHPGQPADRCGGLHVGDAILAV 81
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 44.8 bits (106), Expect = 8e-08
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 21 PDLVVVTL-ERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P+++ V L +R GLG + K V + L G+A ++G + GD +L +
Sbjct: 7 PNVISVRLFKRKVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAV 61
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 44.7 bits (106), Expect = 9e-08
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + L++ GLG S+ ++V + P G+A + G + GD L+E+
Sbjct: 29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 44.2 bits (105), Expect = 9e-08
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 22 DLVVVTLERSHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + L++ GLG S+ ++V + P G+A + G + GD L+E+
Sbjct: 11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 44.5 bits (105), Expect = 1e-07
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLER--SHTGLGISLAGHKD-RTKMAVFVCGLNPSGSASKT 64
SS + ++ +L V L R S LG+++ D + +++ ++P+ A+K
Sbjct: 5 SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64
Query: 65 GSVLVGDELLEI 76
G + GD +++I
Sbjct: 65 GRIREGDRIIQI 76
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 44.4 bits (105), Expect = 1e-07
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
+ G + + +ER S GLG S+ + K+ +FV + P A + + D++L
Sbjct: 21 AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQIL 80
Query: 75 EI 76
I
Sbjct: 81 AI 82
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 43.6 bits (103), Expect = 1e-07
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 18 SLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S+ V + +S LG+++ + F+ + G ++ VGD + I
Sbjct: 1 SMKGIEKEVNVYKSEDSLGLTITDNGV---GYAFIKRIKDGGVIDSVKTICVGDHIESI 56
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 44.3 bits (105), Expect = 1e-07
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 20 GPDLVVVTLERSHT-GLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
L V +++ T LGIS+AG + +F+ ++P+G A++T + VGD ++ I
Sbjct: 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 43.6 bits (103), Expect = 2e-07
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKM-AVFVCGLNPSGSASKTGSVLVGDELLEI 76
V TGLG+ + G +R + V++ + P G K G + GD+L+ I
Sbjct: 14 PAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 43.0 bits (102), Expect = 3e-07
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 22 DLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + +T+ R GLGIS+AG +F+ ++ G A++ G V VGD+LLE+
Sbjct: 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 42.6 bits (101), Expect = 3e-07
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 22 DLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D + + L++ GLG+S+ G ++ VFV + G A G ++ GD++L +
Sbjct: 4 DTLTIGLQKKPGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMV 57
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 43.1 bits (102), Expect = 3e-07
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGD 71
+ + + +T+ R GLGIS+AG +F+ ++ G A++ G V VGD
Sbjct: 10 ARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGD 68
Query: 72 ELLEI 76
+LLE+
Sbjct: 69 KLLEV 73
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 43.2 bits (102), Expect = 3e-07
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 25 VVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VTL++ +GIS+ G +++ + + A+ G+V GDE+ +
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 42.7 bits (101), Expect = 4e-07
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 17 GSLGPDLVVVTLERS-HTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSV 67
GS GP L + ++++ LGIS+ G T +F+ ++P+G+A + G +
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRL 63
Query: 68 LVGDELLEI 76
VG LLE+
Sbjct: 64 RVGLRLLEV 72
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 42.8 bits (101), Expect = 4e-07
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 2 SSFGNFSSDKVKKKYGSLGPDLV-VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSG 59
S G + ++V + G G + V +V +E++ LG ++ D +V + + G
Sbjct: 4 GSSGPITDERVYESIGHYGGETVKIVRIEKARDIPLGATVRNEMD----SVIISRIVKGG 59
Query: 60 SASKTGSVLVGDELLEI 76
+A K+G + GDE+LEI
Sbjct: 60 AAEKSGLLHEGDEVLEI 76
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 42.3 bits (100), Expect = 4e-07
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V V L+ G +L G + + V + G A+ + + GDEL+ I
Sbjct: 11 QYVPVQLQGG-APWGFTLKGGLE-HCEPLTVSKIEDGGKAALSQKMRTGDELVNI 63
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 42.3 bits (100), Expect = 5e-07
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LE+ G G L G ++ K+ ++ + P A K G +L GD L+E+
Sbjct: 6 LCCLEKGPNGYGFHLHG--EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 42.0 bits (99), Expect = 6e-07
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 17 GSLGPDLVVVTLERS-HTGLGISL-AGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
GS G + V LE+ GLG++L + L G A ++G++ +GD L
Sbjct: 4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLT 63
Query: 75 EI 76
I
Sbjct: 64 AI 65
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 42.4 bits (100), Expect = 6e-07
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 25 VVTLERS-HTGLGISLAGHKD--RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VV +++ LG+++AG + ++V + P G S+ G + GD LL +
Sbjct: 27 VVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 43.4 bits (102), Expect = 6e-07
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 20 GPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
L V L+R H GLG+S+ G + +F+ L G A G + VGDE++ I
Sbjct: 82 SRKLKEVRLDRLHPEGLGLSVRGGLEF-GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 42.5 bits (100), Expect = 7e-07
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 24 VVVTLERSHTGLGISLAGHKD--------RTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
V + + LG + +F+ L P G A TG + V DE+LE
Sbjct: 33 VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92
Query: 76 I 76
+
Sbjct: 93 V 93
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 41.9 bits (99), Expect = 7e-07
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 20 GPDLVVVTLERS-HTGLGISLAGHKDRT-----KMAVFVCGLNPSGSASKTGSVLVGDEL 73
G + +VTL+++ GI + + + +F+ G+ P A G + VGD +
Sbjct: 3 GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRI 62
Query: 74 LEI 76
L +
Sbjct: 63 LSL 65
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 42.1 bits (99), Expect = 7e-07
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 25 VVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VTL++ +GIS+ G +++ + + A+ G+V GDE+ +
Sbjct: 27 KVTLQKDAQNLIGISIGGGAQ-YCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 41.6 bits (98), Expect = 8e-07
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
LV + ++H GLG S+ G + + ++V + P A K G + VGD++L +
Sbjct: 9 VRLVSLRRAKAHEGLGFSIRGGSE-HGVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 42.1 bits (99), Expect = 9e-07
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 18 SLGPDLVVVTLER-SHTGLGISLAGHKDRTK--MAVFVCGLNPSGSASKTGSVLVGDELL 74
L L ++ R S LG+ + G K + F+ + A G + GDE+L
Sbjct: 32 LLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91
Query: 75 EI 76
E
Sbjct: 92 EW 93
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 1e-06
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 25 VVTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
+V + R + LGIS+ G +F+ + A KT ++ GD++LE
Sbjct: 18 IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILE 77
Query: 76 I 76
+
Sbjct: 78 V 78
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 41.7 bits (98), Expect = 1e-06
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 6 NFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTG 65
+ SS ++K + V +++ LGIS+ + ++V + A + G
Sbjct: 3 SGSSGGERRKDRPYVEEPRHVKVQKGSEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG 59
Query: 66 SVLVGDELLEI 76
+ GD+LLE
Sbjct: 60 -LEYGDQLLEF 69
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 41.4 bits (97), Expect = 1e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 17 GSLGPDLVVVTLERS-HTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDE 72
+ + V L TG GI L G T+ + + A + G + +GD
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDR 69
Query: 73 LLEI 76
++ I
Sbjct: 70 VMAI 73
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 41.4 bits (97), Expect = 2e-06
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ L + GLG+ + + + + L G+A+ G + GD L+ +
Sbjct: 26 NKVIQTKLTVGNLGLGLVVIQNGP----YLQISHLINKGAAASDGILQPGDVLISV 77
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 40.8 bits (96), Expect = 2e-06
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ T+++ +G G +L D++K F+ ++P A +G + D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.8 bits (96), Expect = 2e-06
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 25 VVTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
V L R LGIS+ G +F+ + A K G++ GD ++E
Sbjct: 7 RVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVE 66
Query: 76 I 76
+
Sbjct: 67 V 67
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 40.9 bits (96), Expect = 2e-06
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTK---MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + GLG+SL G+K R + +F+ + G+A K G + + D+L+ +
Sbjct: 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 41.0 bits (96), Expect = 2e-06
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ T+++ +G G +L D++K F+ ++P A +G + D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 40.4 bits (95), Expect = 3e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GS G + V + G ++G +D + V + G A + GD ++ I
Sbjct: 1 GSSGSSGLTVDVAGP-APWGFRISGGRD-FHTPIIVTKVTERGKAEAAD-LRPGDIIVAI 57
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 40.1 bits (94), Expect = 3e-06
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P V + + G+ LA H +FV ++ A++ G++ GD +L+I
Sbjct: 3 PTKVTLVKSAKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKI 51
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 40.4 bits (95), Expect = 3e-06
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 22 DLVVVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V L + + LG+SL+ ++ + + L + GD + +
Sbjct: 2 EKFNVDLMKKAGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKF 53
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 40.5 bits (95), Expect = 3e-06
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 26 VTLER-SHTGLGISLAG--------HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L R LGIS+ G +F+ + A K G++ GD ++E+
Sbjct: 28 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 87
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 40.0 bits (94), Expect = 4e-06
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 22 DLVVVTLER-SHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V L + + LG+SL+ ++ + L + GD + +
Sbjct: 8 EKFNVDLMKKAGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKF 59
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 39.8 bits (93), Expect = 6e-06
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASK-TG 65
S +K G +LV++ ++ G G ++ G D KM V V + P A
Sbjct: 3 SPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYD-QKMPVIVSRVAPGTPADLCVP 61
Query: 66 SVLVGDELLEI 76
+ GD+++ I
Sbjct: 62 RLNEGDQVVLI 72
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 39.8 bits (93), Expect = 6e-06
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 1 MSSFGNFSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGS 60
S G + + + L P + +V + +G+ LAG D + +FV G+
Sbjct: 9 HHSSGGTENLYFQG-HMILRPSMKLVKFRKG-DSVGLRLAGGND---VGIFVAGVLEDSP 63
Query: 61 ASKTGSVLVGDELLEI 76
A+K G + GD++L +
Sbjct: 64 AAKEG-LEEGDQILRV 78
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 39.7 bits (93), Expect = 6e-06
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAG-----------HKDRTKMAVFVCGLNPSGSASKTG 65
GS G VV + +S +G G ++ G + + V + P G+A + G
Sbjct: 1 GSHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG 60
Query: 66 SVLVGDELLEI 76
V GD +LE+
Sbjct: 61 -VRKGDRILEV 70
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 38.5 bits (90), Expect = 1e-05
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ V L +S L +FV + +G A+K G++ GD +L+I
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQ-----IFVKEMTRTGLATKDGNLHEGDIILKI 49
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 38.0 bits (89), Expect = 1e-05
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V + R + G+ LA H +FV ++ A++ G++ GD +L+I
Sbjct: 4 VTLVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKI 49
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 38.1 bits (89), Expect = 1e-05
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
D V LE G L G KD + + + L P G A++ G V VGD +L I
Sbjct: 3 DSFKVVLEGP-APWGFRLQGGKD-FNVPLSISRLTPGGKAAQAG-VAVGDWVLSI 54
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 39.7 bits (92), Expect = 2e-05
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 25 VVTLERS-HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VT+ ++ GLGIS+ G ++ KM + + + +A +T ++ VGD +L +
Sbjct: 80 RVTVRKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSV 131
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 38.2 bits (89), Expect = 2e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 17 GSLGPDLV--VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELL 74
GS G + L + G SL + K V++ + P G A + G VL D L+
Sbjct: 1 GSSGSSGQPRLCYLVKEGGSYGFSLKTVQG--KKGVYMTDITPQGVAMRAG-VLADDHLI 57
Query: 75 EI 76
E+
Sbjct: 58 EV 59
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 38.1 bits (89), Expect = 2e-05
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 21 PDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V +E+S G LG S+ G + + +FV + SA + G + VGD++ E+
Sbjct: 9 DIIHSVRVEKSPAGRLGFSVRGGSE-HGLGIFVSKVEEGSSAERAG-LCVGDKITEV 63
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 37.7 bits (88), Expect = 2e-05
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 25 VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
++ E+ +GI L K K + V + G + GS+ VGDE+LEI
Sbjct: 15 LIQFEKVTEEPMGICL---KLNEKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 38.2 bits (89), Expect = 3e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 25 VVTLERSHTGLGISLAGHKD----RTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S GLGI + G K+ ++ ++ + P GSA +TG ++ G ++LE
Sbjct: 22 SKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 38.2 bits (89), Expect = 3e-05
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 26 VTLER-SHTGLGISLAGHKDRTK------MAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V + R + G G + +R + + + + A + + VGD +L +
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 37.8 bits (88), Expect = 3e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 18 SLGPDLVVVTLERSHT-GLGISLAGHKDR----TKMAVFVCGLNPSGSASKTGSVLVGDE 72
S + V L R LGI + G+ ++V + P +A G + V D+
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 73 LLEI 76
++ +
Sbjct: 71 IVAV 74
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 37.3 bits (86), Expect = 4e-05
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 17 GSLGPDLVVVTLERSHT---GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDEL 73
G++G + +E+S T G SL+ ++ ++V + +G ASK G + GDE+
Sbjct: 1 GAMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEI 59
Query: 74 LEI 76
LEI
Sbjct: 60 LEI 62
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 36.9 bits (86), Expect = 4e-05
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + G G +L D+++ ++ ++P A+++G + D L+E+
Sbjct: 7 LCHLRKGPQGYGFNLHS--DKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 37.4 bits (87), Expect = 4e-05
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 22 DLVVVTLER-SHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
+ VTL R G GI+++G H + ++ + + G A G + D +
Sbjct: 7 EQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAM 64
Query: 76 I 76
+
Sbjct: 65 V 65
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 37.5 bits (87), Expect = 5e-05
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 8 SSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
SS + V GLG S++ K +F+ + P +++ G +
Sbjct: 2 SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPI-QKPGIFISHVKPGSLSAEVG-L 59
Query: 68 LVGDELLEI 76
+GD+++E+
Sbjct: 60 EIGDQIVEV 68
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 38.2 bits (88), Expect = 6e-05
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ T+++ +G G +L D++K F+ ++P A +G + D ++E+
Sbjct: 12 LCTMKKGPSGYGFNLHS--DKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 36.5 bits (85), Expect = 7e-05
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 22 DLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V+L G L G KD M + + L G A++ V +GD +L I
Sbjct: 3 SNYSVSLVGP-APWGFRLQGGKD-FNMPLTISSLKDGGKAAQAN-VRIGDVVLSI 54
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 37.1 bits (86), Expect = 7e-05
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 20 GPDLVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
G D V L LG+++ G + + +++ G++P A +G + VGD++LE+
Sbjct: 18 GGDEKKVNLVLGDGRSLGLTIRGGAE-YGLGIYITGVDPGSEAEGSG-LKVGDQILEV 73
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 36.5 bits (85), Expect = 7e-05
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VTL G L G KD M + + + P A+++ + GD ++ I
Sbjct: 5 VTLTGP-GPWGFRLQGGKD-FNMPLTISRITPGSKAAQSQ-LSQGDLVVAI 52
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 36.5 bits (85), Expect = 7e-05
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMA-VFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LE+ G G L K F+ ++P A K G + GD L+ +
Sbjct: 6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 36.6 bits (85), Expect = 7e-05
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
GS G VV +++ G G L + + + P A G + D ++ +
Sbjct: 1 GSSGSSGRVVVIKKGSNGYGFYLRA--GPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 57
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 36.5 bits (85), Expect = 7e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VV +++ G G L + + + P A G + D ++ +
Sbjct: 8 VVVIKKGSNGYGFYLRA--GPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 36.2 bits (84), Expect = 9e-05
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 22 DLVVVTLERS--HTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L VTL + G S+A + V+V + P+G G + D LL++
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 36.1 bits (84), Expect = 9e-05
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ L + G G L R F+ + G A G + D ++E+
Sbjct: 6 LCRLAKGENGYGFHLNA--IRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEV 54
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 35.7 bits (83), Expect = 1e-04
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ V + G + G +D + V + G A + GD ++ I
Sbjct: 4 LTVDVAGP-APWGFRITGGRD-FHTPIMVTKVAERGKAKDAD-LRPGDIIVAI 53
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 35.9 bits (83), Expect = 1e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LG +L G+ V V L+P SAS G GD ++ I
Sbjct: 26 SIRFTAEEGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSI 71
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 36.3 bits (84), Expect = 1e-04
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 18 SLGPDLVVVTLER-SHTGLGISLAG-----HKDRTKMAVFVCGLNPSGSASKTGSVLVGD 71
+ + VTL++ S G GI+++G H + + ++ + + P G A G + D
Sbjct: 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQEND 67
Query: 72 ELLEI 76
++ +
Sbjct: 68 RVVMV 72
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 35.7 bits (83), Expect = 1e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
VTL + G L G +D + + ++ A+ + GD + I
Sbjct: 10 HSVTLRGP-SPWGFRLVGGRD-FSAPLTISRVHAGSKAALAA-LCPGDLIQAI 59
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 36.5 bits (83), Expect = 2e-04
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 29 ERSHTGLGISLA-GHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LG+ + V + + G A+++G + +GD+++ I
Sbjct: 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260
Score = 31.5 bits (70), Expect = 0.013
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V++ LG S+ +C L G A + G V VG ++EI
Sbjct: 299 VLIKRPDLKYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIEI 342
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 34.1 bits (79), Expect = 4e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
P + V + R G G +L+G + + A G + GD++L +
Sbjct: 1 PRVRSVEVARGRAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAV 50
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 34.6 bits (80), Expect = 4e-04
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+T+ R G G ++ V V ++ G A + G + D +L++
Sbjct: 6 QITIPRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQL 51
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 33.9 bits (78), Expect = 6e-04
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 23 LVVVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ ++ G L G KD + + + + P A+ + +GD + I
Sbjct: 2 MTTQQIDLQGPGPWGFRLVGGKD-FEQPLAISRVTPGSKAALAN-LCIGDVITAI 54
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 33.8 bits (78), Expect = 7e-04
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V +++ G G +++G + V V + P G+A K G V GD ++++
Sbjct: 11 CVIIQKDQHGFGFTVSGDRI-----VLVQSVRPGGAAMKAG-VKEGDRIIKV 56
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 34.2 bits (78), Expect = 7e-04
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 21 PDLVVVTLERSHT---GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ +E+S T G SL+ ++ ++V + +G ASK G + GDE+LEI
Sbjct: 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEI 71
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 33.9 bits (78), Expect = 7e-04
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 25 VVTLERSH-TGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+V +++ +GI+L ++ V + G + G++ VGDE+ EI
Sbjct: 4 LVQFQKNTDEPMGITLKMNELN---HCIVARIMHGGMIHRQGTLHVGDEIREI 53
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 33.6 bits (77), Expect = 0.001
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 17 GSLGPDLVVVTLERSHT-GLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
GS G +V + ++ LG++ + + + G ++ G + VGD + E
Sbjct: 1 GSSGSSGRMVGIRKTAGEHLGVTFRVEGG----ELVIARILHGGMVAQQGLLHVGDIIKE 56
Query: 76 I 76
+
Sbjct: 57 V 57
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 33.4 bits (77), Expect = 0.001
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 21 PDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+L+ V + + G G ++A V + + ++ + GD ++E+
Sbjct: 2 MELITVHIVKGPMGFGFTIADSPGGG--GQRVKQIVD---SPRSRGLKEGDLIVEV 52
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 33.5 bits (77), Expect = 0.001
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V L G L+G D + + + P A+ + GD +L I
Sbjct: 7 GNVVLPGP-APWGFRLSGGID-FNQPLVITRITPGSKAAAAN-LCPGDVILAI 56
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
S +L+ +T+ + G G ++A V + + GD ++EI
Sbjct: 5 SSGQAELMTLTIVKGAQGFGFTIADSPT----GQRVKQILDIQGC---PGLCEGDLIVEI 57
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 33.1 bits (76), Expect = 0.002
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 25 VVTLERSHTGLGISLAGHK------DRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + S G SL + D + V + A + G + GD + I
Sbjct: 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHI 61
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 33.2 bits (76), Expect = 0.002
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+T+ R G G ++ V V ++ G A + G + D +L++
Sbjct: 18 QITIRRGKDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQL 63
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 32.9 bits (75), Expect = 0.002
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ LG +L G+ V V L+P SAS G GD ++ I
Sbjct: 18 GIHFTVEEGDLGFTLRGNTP-----VQVHFLDPHCSASLAG-AKEGDYIVSI 63
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 32.3 bits (74), Expect = 0.003
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 26 VTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V+L G L G KD M + + L G AS+ V +GD +L I
Sbjct: 9 VSLVGP-APWGFRLQGGKD-FNMPLTISSLKDGGKASQAH-VRIGDVVLSI 56
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 32.7 bits (74), Expect = 0.004
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 26 VTLERSHTG----LGISLAG-----------HKDRTKMAVFVCGLNPSGSASKTGSVLVG 70
V + + G LG S+ G +D+T ++V ++ G A G + +G
Sbjct: 27 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIG 85
Query: 71 DELLEI 76
D+++++
Sbjct: 86 DKIMQV 91
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 30.7 bits (70), Expect = 0.010
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 17 GSLGPDLVVVTLERSHTG-LGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLE 75
G++ P +T+ + TG +G K + + SA++ G +L + E
Sbjct: 1 GAMDP--RTITMHKDSTGHVGFIFKNGK--------ITSIVKDSSAARNG-LLTEHNICE 49
Query: 76 I 76
I
Sbjct: 50 I 50
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 30.9 bits (70), Expect = 0.012
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 23 LVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
+ + G ++ +FV + A + + V DE++ I
Sbjct: 7 ISINQTPGKSLDFGFTIKWDIPG----IFVASVEAGSPAEFSQ-LQVDDEIIAI 55
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 31.0 bits (70), Expect = 0.014
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 17 GSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
LV + L + G G ++A K+ + + + + GD + EI
Sbjct: 7 YKKAGLLVTIPLIKGPKGFGFAIADSPTGQKVKMIL-------DSQWCQGLQKGDIIKEI 59
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 29.3 bits (66), Expect = 0.042
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 24 VVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSVLVGDELLEI 76
V++ LG S+ +C L G A + G V VG ++EI
Sbjct: 15 VLIRRPDLRYQLGFSVQNGI--------ICSLMRGGIAERGG-VRVGHRIIEI 58
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 28.2 bits (62), Expect = 0.15
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 34 GLGISLAGHKDRTKMAVFVCGLNPSG-SASKTGSVLVGDELLEI 76
G +++ V V +N S + ++ GD +LEI
Sbjct: 30 GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEI 73
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 27.6 bits (61), Expect = 0.24
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 28/79 (35%)
Query: 25 VVTLERSHTGLGISLAGHKDRTKMA---------------------------VFVCGLNP 57
VTL+R+ G G +L + +FV +
Sbjct: 11 TVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKE 70
Query: 58 SGSASKTGSVLVGDELLEI 76
G A + G + GD ++++
Sbjct: 71 GGPAFEAG-LCTGDRIIKV 88
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 26.4 bits (57), Expect = 0.88
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 20 GPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCGLNPSGSASKTGSV 67
G + ++ +GIS H+ + ++A+ S SA T
Sbjct: 69 GAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPTSRT 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 18 SL--GPDLVVVT-LERSHTGLGISLAGHK-----DRTK 47
SL G +VV+ +S GL ++L K D+++
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate
biosynthesis, structural GENO PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium}
Length = 330
Score = 24.9 bits (55), Expect = 2.9
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 21 PDLVVVTLERSHTGL---GISLAGHKDRTKMAVFVCGLNP 57
V + + T L G + ++AV G+NP
Sbjct: 184 TARVETVIGIADTFLKRVGY------VKPRIAV--AGVNP 215
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 147
Score = 24.7 bits (54), Expect = 3.0
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 34 GLGISLAGHK-DRTKMAVFVCGLNPSGSA 61
G L G R+K F G++ GSA
Sbjct: 32 VGGWFLGGRARARSKNVPFESGIDSVGSA 60
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 24.8 bits (55), Expect = 3.1
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 43 KDRTKMAVFVCG 54
RT MAV G
Sbjct: 193 TKRTHMAVHPMG 204
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 24.6 bits (53), Expect = 3.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 10 DKVKKKYGSLGPDLVVVTLERSHTGLGISLA 40
+K+ K Y + + V R+H G G S
Sbjct: 47 EKLAKLYEVKDSNCIFVFKFRTHFGGGKSTG 77
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural
genomics, PSI, protein structure initiative; NMR
{Methanococcus maripaludis} SCOP: d.12.1.3
Length = 102
Score = 24.3 bits (53), Expect = 3.8
Identities = 4/29 (13%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 10 DKVKKKYGSLGPDLVVVTLERSHTGLGIS 38
K+ + ++VV G +
Sbjct: 37 MKLVAVLNA-NKQVLVVDTLDQIFGKLEA 64
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 23.9 bits (51), Expect = 6.1
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 11/48 (22%)
Query: 7 FSSDKVKKKYGSLGPDLVVVTLERSHTGLGISLAGHKDRTKMAVFVCG 54
+ K K YG D T+ H T++ VF+CG
Sbjct: 118 ITGLKQKTLYGRPNWDNEFKTIASQHPN-----------TRIGVFLCG 154
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 23.7 bits (52), Expect = 7.3
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTL 28
+G + V + + G VVV
Sbjct: 207 WGQQPVEDVIARTHNAGVKEVVVKR 231
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 23.7 bits (52), Expect = 7.8
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 4 FGNFSSDKVKKKYGSLGPDLVVVTL 28
FG+ D +Y G VVV
Sbjct: 223 FGDAGPDATADRYARAGVRSVVVKN 247
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 23.6 bits (52), Expect = 8.7
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 21 PDLVVVTLERSHTGL----GISLAGHKDRTKMAVFVCGLNP 57
+ + L GI + ++ V CGLNP
Sbjct: 182 QASLHEVITILDNDLKTKFGI------TQPQIYV--CGLNP 214
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 23.7 bits (52), Expect = 8.9
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 21 PDLVVVTLERSHTGL----GISLAGHKDRTKMAVFVCGLNP 57
+ + H L GI ++ V CGLNP
Sbjct: 177 DERLTRVARILHADLRDKFGI------AHPRILV--CGLNP 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.371
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,114,182
Number of extensions: 55182
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 163
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)