BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18108
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKS 93
F F ++KSY T+EE +R+A+F++NL I N+ + + + +NH DL+R+E +
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEFRR 83
Query: 94 R-LGLNLSK 101
+ LG S+
Sbjct: 84 KYLGFKKSR 92
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 19 SNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATY 78
S N+L T ++ FE ++ +K Y +E RF +F+DNLK I++ NK ++ +
Sbjct: 52 SQNDL-TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNK-KNNSYWL 109
Query: 79 GINHLSDLTREEMKSR 94
G+N +D++ +E K +
Sbjct: 110 GLNVFADMSNDEFKEK 125
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 28 PEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLT 87
P +K FE++ + F+KSY T E+ F +++K ++ N G INHLSDL+
Sbjct: 2 PSSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NGG-------AINHLSDLS 53
Query: 88 REEMKSRL 95
+E K+R
Sbjct: 54 LDEFKNRF 61
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 41 FSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATY--GINHLSDLTREEMKSRLG 96
F K+Y +E++ +R E ++ E K E G T+ GINHL+DLT EE R G
Sbjct: 17 FDKNYEAEEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEFAQRSG 74
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTR 88
+++E F +++SY +E R +F+ L+ E+ N K G +Y G+N +D+T
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 89 EEMKS 93
EEMK+
Sbjct: 80 EEMKA 84
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 39 RDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEH--GTATY--GINHLSDLTREEMKS 93
+ + K Y K E A R ++E NLK + L+ EH G +Y G+NHL D+T EE+ S
Sbjct: 17 KTYGKQYKEKNEEAVRRLIWEKNLKFVM-LHNLEHSMGMHSYDLGMNHLGDMTSEEVMS 74
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTR 88
+Q+ +F KSY + E +R +F+DN+ I + N K E G TY +N D+++
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 89 EE 90
EE
Sbjct: 85 EE 86
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 32.7 bits (73), Expect = 0.061, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTREE 90
+ ++ R ++K Y ++ +R ++E N+K I++ N + + G TY G+N +D+T EE
Sbjct: 5 WHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEE 63
Query: 91 MKSRLGLNLSK 101
K++ +S+
Sbjct: 64 FKAKYLTEMSR 74
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 28 PEHL--KQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINH 82
PE + +E + + K Y K + R ++E NLK I N + G TY +NH
Sbjct: 3 PEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNH 62
Query: 83 LSDLTREEMKSRL 95
L D+T EE+ ++
Sbjct: 63 LGDMTSEEVVQKM 75
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 11 LALFGQMKSNNELKTENPEHLKQFEKF----------IRDFSKSYPT---KEEVAKRFAV 57
L L+G++ + EL+ +++ + +K+ IR+ +K++P + VA A
Sbjct: 68 LILYGRLPTKRELE----DYINRMKKYRELHPATVEVIRNLAKAHPMFALEAAVAAEGAY 123
Query: 58 FEDNLKLIEDLNKGEH 73
EDN KLIE L+ G +
Sbjct: 124 DEDNQKLIEALSVGRY 139
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 63 KLIEDLNKGEHGTATYGINHLS--DLTREEMKSRLGLNL 99
++IEDLN +G + Y + + S DLT E+ LG+ L
Sbjct: 237 RMIEDLNNAVNGKSKYKMTYYSGHDLTLLEVMGTLGVPL 275
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 30 HLKQFEKFIRDFSKSYPTKEEVA---------KRFAV-FEDNLKLIED 67
H F F+ D ++ +PT+ EVA RFAV E+ +K+ +D
Sbjct: 307 HAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDD 354
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 30 HLKQFEKFIRDFSKSYPTKEEVA---------KRFAV-FEDNLKLIED 67
H F F+ D ++ +PT+ EVA RFAV E+ +K+ +D
Sbjct: 305 HAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVKVKDD 352
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 61 NLKLIEDLNKGEHG----TATYGINHLSDLT 87
N +L+E+L KGE G + +YG+ D+T
Sbjct: 7 NFRLLEELEKGEKGFGPESCSYGLADSDDIT 37
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 61 NLKLIEDLNKGEHG----TATYGINHLSDLT 87
N +L+E+L KGE G + +YG+ D+T
Sbjct: 8 NFRLLEELEKGEKGFGPESCSYGLADSDDIT 38
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 51 VAKRFAVFEDNLKLIEDLNKGEH---GTAT 77
VA FAVF+D L +++ + EH GT T
Sbjct: 196 VATSFAVFDDTLLIVDPTGEEEHLATGTLT 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,807,029
Number of Sequences: 62578
Number of extensions: 103852
Number of successful extensions: 347
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 28
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)