RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18108
(102 letters)
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS. Peptide proteinase
inhibitors can be found as single domain proteins or as
single or multiple domains within proteins; these are
referred to as either simple or compound inhibitors,
respectively. In many cases they are synthesised as
part of a larger precursor protein, either as a
prepropeptide or as an N-terminal domain associated
with an inactive peptidase or zymogen. This domain
prevents access of the substrate to the active site.
Removal of the N-terminal inhibitor domain either by
interaction with a second peptidase or by autocatalytic
cleavage activates the zymogen. Other inhibitors
interact direct with proteinases using a simple
noncovalent lock and key mechanism; while yet others
use a conformational change-based trapping mechanism
that depends on their structural and thermodynamic
properties.
Length = 57
Score = 65.3 bits (160), Expect = 5e-16
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREE 90
FE++ + KSY ++EE A+RFA+F++NLK IE+ NK + G+N SDLT EE
Sbjct: 1 FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS.
Length = 58
Score = 63.0 bits (154), Expect = 5e-15
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEM 91
FE + + + KSY ++EE RF +F++NL+ IE+ NK + + T G+N +DLT EE
Sbjct: 1 FEDWKKKYGKSYYSEEEELYRFQIFKENLRFIEEHNKKGNVSYTLGLNQFADLTDEEF 58
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 49.4 bits (118), Expect = 3e-08
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 27 NPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDL 86
N E++ F FI++ K Y T +E+ +R+ F +NL I N E+ G+N DL
Sbjct: 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDL 221
Query: 87 TREEMKSRLGLNLSKH 102
+ EE K + L L
Sbjct: 222 SFEEFKKKY-LTLKSF 236
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 43.5 bits (102), Expect = 3e-06
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKS 93
FE+F R + ++Y T E +R A FE NL+L+ + ++ + A +GI DL+ E +
Sbjct: 38 FEEFKRTYQRAYGTLTEEQQRLANFERNLELMRE-HQARNPHARFGITKFFDLSEAEFAA 96
Query: 94 R 94
R
Sbjct: 97 R 97
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 42.0 bits (99), Expect = 1e-05
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 13 LFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGE 72
LF +++ K E E +FE+F + +++ + T E RF F +N + K
Sbjct: 106 LFKDGYISDDPKLEF-EVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEV----KSH 160
Query: 73 HGTATY--GINHLSDLTREEMKS 93
G Y IN SDLT EE +
Sbjct: 161 KGDEPYSKEINKFSDLTEEEFRK 183
>gnl|CDD|215867 pfam00342, PGI, Phosphoglucose isomerase. Phosphoglucose isomerase
catalyzes the interconversion of glucose-6-phosphate and
fructose-6-phosphate.
Length = 483
Score = 28.6 bits (64), Expect = 0.50
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 29 EHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIE 66
E + K K VAK F N K +E
Sbjct: 164 ETMTNARSAREWLLKKLGEKSAVAKHFVALSTNAKKVE 201
>gnl|CDD|218049 pfam04373, DUF511, Protein of unknown function (DUF511). Bacterial
protein of unknown function.
Length = 310
Score = 26.5 bits (59), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 17 MKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIE 66
+ N L EN + F+ FI+D ++ Y T + + A F+ LK E
Sbjct: 265 WDTANRLAEENKD----FKDFIKDVNQYYQTGKRKSIWKAEFDKVLKDEE 310
>gnl|CDD|217535 pfam03401, TctC, Tripartite tricarboxylate transporter family
receptor. These probable extra-cytoplasmic solute
receptors are strongly overrepresented in several
beta-proteobacteria. This family, formerly known as Bug
- Bordetella uptake gene (bug) product - is a family of
bacterial tripartite tricarboxylate receptors of the
extracytoplasmic solute binding receptor-dependent
transporter group of families, distinct from the ABC and
TRAP-T families. The TctABC system has been
characterized in S. typhimurium, and TctC is the
extracytoplasmic tricarboxylate-binding receptor which
binds the transporters TctA and TctB, two integral
membrane proteins. Complete three-component systems are
found only in bacteria.
Length = 274
Score = 26.6 bits (59), Expect = 2.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 69 NKGEHGTATYGINHLSDLTREEMKSRLGLNLS 100
N G+ A+ GI + L E + S+ G+ LS
Sbjct: 103 NPGKLTFASAGIGTSNHLAGELLASKAGVQLS 134
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 26.5 bits (59), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 46 PTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHL 83
P++EEVA+ F + L+ + + +K G YG L
Sbjct: 278 PSQEEVAEVLEQFVEALQDLFEKHKARAG---YGDLEL 312
>gnl|CDD|239950 cd04513, Glycosylasparaginase, Glycosylasparaginase catalyzes the
hydrolysis of the glycosylamide bond of
asparagine-linked glycoproteins. This enzyme is an
amidase located inside lysosomes. Mutation of this gene
in humans causes a genetic disorder known as
aspartylglycosaminuria (AGU). The glycosylasparaginase
precursor undergoes autoproteolysis through an N-O or
N-S acyl rearrangement of the peptide bond, which leads
to the cleavage of a peptide bond between an Asp and a
Thr. This proteolysis step generates an exposed
N-terminal catalytic threonine and activates the enzyme.
Length = 263
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 49 EEVAKRFAVFEDNLKLIEDLNKGEHGTATYGI 80
+ +AK F + ++ KGE+G A G+
Sbjct: 224 KRIAKHFDGPDFEGAVVALNKKGEYGAACNGL 255
>gnl|CDD|235379 PRK05261, PRK05261, putative phosphoketolase; Provisional.
Length = 785
Score = 25.9 bits (58), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 13/44 (29%)
Query: 26 ENPEHLKQFEKFIRDFSKSY-PTKEEVAKRFAVFEDNLKLIEDL 68
+NPEHL E D+ +SY P EE +F+++ +L +L
Sbjct: 313 DNPEHLDLLE----DWLRSYRP--EE------LFDEDGRLKPEL 344
>gnl|CDD|227216 COG4879, COG4879, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 25.6 bits (56), Expect = 4.6
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 36 KFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGE 72
K ++ +YP ++ +A F K+ E++ G+
Sbjct: 149 KSLKTLETAYPELKQRLLNYARFYSAFKIAEEIALGK 185
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 25.4 bits (56), Expect = 7.4
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 26 ENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN 69
E ++ FE+ IR F K+ AK + I D
Sbjct: 836 PQTESMEAFEEMIRPFRLHKTEKDREAKDPKMTWTKPWKITDAE 879
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 25.1 bits (56), Expect = 8.8
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 9/43 (20%)
Query: 50 EVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMK 92
E+A FA EDN+ L E++ K Y + ++ + ++++
Sbjct: 237 EMA--FADLEDNMDLAEEMLK-------YVVKYVLENCPDDLE 270
>gnl|CDD|223416 COG0339, Dcp, Zn-dependent oligopeptidases [Amino acid transport
and metabolism].
Length = 683
Score = 24.9 bits (55), Expect = 8.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 12 ALFGQMKS---NNELKTENPEHLKQFEKFIRDFSKS 44
LF + K+ + E +PE + E +RDF S
Sbjct: 112 GLFARYKALWQSPESAGLDPEQKRVVENALRDFVLS 147
>gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an
unusual, industrially important polysaccharide in which
short alpha-1,4 chains (maltotriose) are connected in
alpha-1,6 linkages. Enzymes that cleave alpha-1,6
linkages in pullulan and release maltotriose are called
pullulanases although pullulan itself may not be the
natural substrate. This family consists of pullulanases
related to the subfamilies described in TIGR02102 and
TIGR02103 but having a different domain architecture
with shorter sequences. Members are called type I
pullulanases.
Length = 605
Score = 25.0 bits (55), Expect = 8.9
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 18 KSNNELKTENPEHLKQFEKFIRDFSKSYPTK--EEVAKRFAVFEDNLKLIEDLNKGEHGT 75
+ ++ + ENPE +E IRDFS + K + E KG +G
Sbjct: 115 EKDHGPRLENPEDAIIYELHIRDFSIH-ENSGVKNKGKYLGLTETG-------TKGPNGV 166
Query: 76 ATYGINHLSDL 86
+T G+++L +L
Sbjct: 167 ST-GLDYLKEL 176
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 24.9 bits (55), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 20 NNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLK 63
+EL + E + +K ++ + K+ T+EE K F F++ LK
Sbjct: 77 RDELLKDIEELRAEIDKLLKKYEKTILTEEE-KKLFNEFKEQLK 119
>gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68). Proteins in
this family are subunits the FACT complex. The FACT
complex plays a role in transcription initiation and
promotes binding of TATA-binding protein (TBP) to a TATA
box in chromatin.
Length = 152
Score = 24.5 bits (54), Expect = 9.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 23 LKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNK 70
++++ +HL+ K I++ K +E K A + KLI + NK
Sbjct: 72 FRSKDSKHLQDVFKAIKELQKRVKKRETERKEKADVVEQEKLILNRNK 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.347
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,065,534
Number of extensions: 428116
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 51
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)