RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18108
(102 letters)
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 79.6 bits (197), Expect = 2e-19
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 19 SNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATY 78
S ++L + ++ F ++ + +K Y +E RF +F+DNL I++ NK +
Sbjct: 8 SQDDLTST-ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSY-WL 65
Query: 79 GINHLSDLTREEMKS-RLGLNLSKH 102
G+N +DL+ +E +G +
Sbjct: 66 GLNEFADLSNDEFNEKYVGSLIDAT 90
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 78.1 bits (193), Expect = 7e-19
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 28 PEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLS 84
+++E F +++SY +E R +F+ L+ E+ N K G +Y G+N +
Sbjct: 16 TFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFT 75
Query: 85 DLTREEMKS-RLGLNLSKH 102
D+T EEMK+ GL +
Sbjct: 76 DMTPEEMKAYTHGLIMPAD 94
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 76.1 bits (188), Expect = 3e-18
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 33 QFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTRE 89
+ + + + K Y K E A R ++E NLK + N + G +Y G+NHL D+T E
Sbjct: 11 HWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSE 70
Query: 90 EMKS-RLGLNLSKH 102
E+ S L +
Sbjct: 71 EVMSLMSSLRVPSQ 84
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 75.7 bits (187), Expect = 4e-18
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 33 QFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTRE 89
+E + + K Y K + R ++E NLK I N + G TY +NHL D+T E
Sbjct: 10 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSE 69
Query: 90 EMKS-RLGLNLSKH 102
E+ GL +
Sbjct: 70 EVVQKMTGLKVPLS 83
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 75.0 bits (185), Expect = 9e-18
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTR 88
+Q+ +F KSY + E +R +F+DN+ I + N K E G TY +N D+++
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 89 EEMKS-RLGLNLSKH 102
EE + K
Sbjct: 85 EEFLAYVNRGKAQKP 99
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 69.8 bits (171), Expect = 3e-17
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEM 91
F F ++KSY T+EE +R+A+F++NL I N+ + + + +NH DL+R+E
Sbjct: 23 DAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEF 81
Query: 92 KS-RLGLNLSKH 102
+ LG S++
Sbjct: 82 RRKYLGFKKSRN 93
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 73.4 bits (181), Expect = 3e-17
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 28 PEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLT 87
P +K FE++ + F+KSY T E+ F +++K ++ INHLSDL+
Sbjct: 2 PSSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLS 53
Query: 88 REEMKSR-LGLNLSKH 102
+E K+R L +
Sbjct: 54 LDEFKNRFLMSAEAFE 69
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 73.1 bits (180), Expect = 5e-17
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 27 NPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHL 83
+ Q+ K+ ++ Y EE R AV+E N+K+IE N + G ++ +N
Sbjct: 5 DHSLEAQWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63
Query: 84 SDLTREEMKS-RLGLNLSKH 102
D+T EE + G K
Sbjct: 64 GDMTSEEFRQVMNGFQNRKP 83
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol
protease, cysteine protease, zymogen, hydro; 1.40A
{Fasciola hepatica}
Length = 310
Score = 72.3 bits (178), Expect = 7e-17
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 33 QFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTRE 89
+ ++ R ++K Y ++ R ++E N+K I++ N + + G TY G+N +D+T E
Sbjct: 4 LWHQWKRMYNKEYNGADD-QHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 90 EMKSRLG 96
E K++
Sbjct: 63 EFKAKYL 69
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic
disorder P like protein, hydrolase; NMR {Drosophila
melanogaster}
Length = 80
Score = 60.4 bits (147), Expect = 6e-14
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 33 QFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTRE 89
++ ++ F K+Y +E+ R ++ ++ IE+ N K E G T+ GINHL+DLT E
Sbjct: 9 EWVEYKSKFDKNYEAEED-LMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPE 67
Query: 90 EMKSRLGLNLSKH 102
E R G + +
Sbjct: 68 EFAQRSGKKVPPN 80
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 55.2 bits (133), Expect = 1e-10
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKS 93
E + ++ + +++ + ++ +N + LT +M
Sbjct: 122 SENVYV--NTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIR 179
Query: 94 RLG 96
R G
Sbjct: 180 RSG 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.001
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 2 AEDASAEA------TLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSY----PTKEEV 51
+D E L++ + + +N +H+ +K S P E
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEP--AEY 371
Query: 52 AKRF---AVFEDNLKLIEDL 68
K F +VF + + L
Sbjct: 372 RKMFDRLSVFPPSAHIPTIL 391
Score = 27.9 bits (61), Expect = 0.63
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 11 LALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAK-----RFAVFEDNLKLI 65
L Q+K +N ++ I DF +K R A+ ++ +
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 66 EDLNK 70
E+ +K
Sbjct: 581 EEAHK 585
Score = 27.1 bits (59), Expect = 1.0
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 15 GQMKSNNE--LKTENPEHLKQFE-KFIRDFSKSYPTKEEV 51
G+ + + L + F+ K ++D KS +KEE+
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Score = 24.4 bits (52), Expect = 9.0
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 31 LKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIE-DLNKGEH 73
LK ++ +I D + P E + D L IE +L ++
Sbjct: 527 LKFYKPYICD---NDPKYERLVN---AILDFLPKIEENLICSKY 564
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 33.9 bits (78), Expect = 0.004
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 63 KLIEDLNKGEHGTATYGIN-HLSDLTREEMKSRLGLNLSKH 102
++ +N+ G + + ++T E K G+ +
Sbjct: 13 AFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNN 53
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 28.5 bits (64), Expect = 0.28
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 53 KRFAVFEDNLKLIEDLNKGEHG-TATYGINHLSDLTREEMKSRLGLNLSKH 102
F D +L+ +NK A ++ ++ +K G L
Sbjct: 5 PSFHPLSD--ELVNYVNKRNTTWQAG---HNFYNVDMSYLKRLCGTFLGGP 50
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1,
transcriptional repressor, gene regulation; NMR {Mus
musculus}
Length = 77
Score = 27.3 bits (61), Expect = 0.38
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 26 ENPEHLKQFEKFIRDFSKSYPTKEEVAKRFA-VFEDNLKLIEDLN 69
+P F + +++F V +R + +F ++ LI N
Sbjct: 20 SDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFN 64
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix
repeat, transcriptional repressor, structural genomics,
NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Length = 80
Score = 27.0 bits (60), Expect = 0.42
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 26 ENPEHLKQFEKFIRDFSKSYPTKEEVAKRFA-VFEDNLKLIEDLN 69
+P F + +++F V +R + +F ++ LI N
Sbjct: 26 SDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFN 70
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme
biosynthesis, structural GENO niaid; 1.65A {Burkholderia
thailandensis}
Length = 368
Score = 27.1 bits (61), Expect = 0.92
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 27 NPEHLKQFEKFIRDFSKSY 45
PEH+ + + S++
Sbjct: 344 PPEHVAELVDEVHRHSRAI 362
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase,
transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae}
SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A*
3c66_A* 2o1p_A 2q66_A*
Length = 530
Score = 27.1 bits (59), Expect = 1.1
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFE 59
+ ++ S+ T++E A R V +
Sbjct: 27 DSLIQELKKE-GSFETEQETANRVQVLK 53
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen
decarboxylase coproporphyrinogen, X-RAY crystallography,
lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1
PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A
1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A
1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Length = 367
Score = 26.3 bits (59), Expect = 2.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 27 NPEHLKQFEKFIRDFSKSY 45
+PEH+ F + S+
Sbjct: 346 DPEHVGAFVDAVHKHSRLL 364
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel,
cytoplasm, lyase, porphyrin biosynthesis; 2.80A
{Shigella flexneri}
Length = 354
Score = 25.9 bits (58), Expect = 2.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 27 NPEHLKQFEKFIRDFSKSY 45
PEH F + + S+ Y
Sbjct: 334 PPEHAGVFVEAVHRLSEQY 352
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 25.2 bits (56), Expect = 4.1
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 27 NPEHLKQFEKFIRDFSKSY 45
+PE LK+ F+ ++S++
Sbjct: 335 SPEVLKKLTAFVHEYSQNK 353
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 25.2 bits (56), Expect = 4.2
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 50 EVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMK 92
E A + D +K+ E+L Y + +L ++E++
Sbjct: 230 EAA--WMDLWDIMKVEEELVS-------YMVQRTLELRKKEIE 263
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY
diffraction, structural genomics, NPPSFA; 1.90A {Aquifex
aeolicus}
Length = 338
Score = 25.2 bits (56), Expect = 4.5
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 27 NPEHLKQFEKFIRDFSKS 44
E +K ++ F +
Sbjct: 321 ELEKVKYLVDLVKSFPLT 338
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 25.3 bits (56), Expect = 4.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 50 EVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMK 92
E+ F FED L +EDL I+++ + ++++
Sbjct: 251 ELP--FISFEDLLNHLEDLVC-------TVIDNVMAVHGDKIR 284
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw,
transferase; 2.6A {Rauvolfia serpentina}
Length = 421
Score = 25.2 bits (55), Expect = 5.2
Identities = 2/21 (9%), Positives = 6/21 (28%)
Query: 28 PEHLKQFEKFIRDFSKSYPTK 48
+ + + S +K
Sbjct: 401 EDEMAMLPVELLSLVDSDFSK 421
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 24.5 bits (54), Expect = 7.6
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 9/43 (20%)
Query: 50 EVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMK 92
EV A ED ++LIE L + T E
Sbjct: 120 EVE--RAKMEDIMRLIERLVY-------GLFRKAEEWTGREFP 153
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 24.5 bits (54), Expect = 7.8
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 50 EVAKRFAVFEDNLKLIEDL 68
E F +D ++ IE+L
Sbjct: 227 ECP--FITLDDLMEKIEEL 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.347
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,475,420
Number of extensions: 77978
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 51
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.3 bits)