RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18108
(102 letters)
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 71.6 bits (174), Expect = 6e-17
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 31 LKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREE 90
+K FE++ + F+KSY T E+ F +++K ++ INHLSDL+ +E
Sbjct: 2 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDE 53
Query: 91 MKSRLGLNLSKH 102
K+R ++
Sbjct: 54 FKNRFLMSAEAF 65
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens)
[TaxId: 9606]}
Length = 316
Score = 66.6 bits (161), Expect = 5e-15
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 33 QFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN-KGEHGTATY--GINHLSDLTRE 89
Q+ K+ ++ Y EE R AV+E N+K+IE N + G ++ +N D+T E
Sbjct: 11 QWTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSE 69
Query: 90 EMKSR 94
E +
Sbjct: 70 EFRQV 74
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 356
Score = 25.7 bits (55), Expect = 1.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 23 LKTENPEHLKQFEKFIRDFSKSY 45
+PEH+ F + S+
Sbjct: 332 YPDMDPEHVGAFVDAVHKHSRLL 354
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 196
Score = 25.2 bits (55), Expect = 1.6
Identities = 4/28 (14%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 32 KQFEKFIRDFSKSYPTKEEVAKRFAVFE 59
++ + ++ F + +EE+ +R +
Sbjct: 22 QKLVETLKPF-GVFEEEEELQRRILILG 48
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea
hare (Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 25.0 bits (54), Expect = 1.9
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 31 LKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGT 75
+ ++KF D K Y + K+ +V+ D ++E+L G G
Sbjct: 1 INDYDKFYEDIWKKYVPQPVEVKQGSVY-DYYDILEELGSGAFGV 44
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP
{Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 407
Score = 24.8 bits (52), Expect = 2.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 27 NPEHLKQFEKFIRDFSKSYP 46
P ++ ++ I +F K YP
Sbjct: 13 APNEIEYWKGVIAEFEKKYP 32
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 24.4 bits (53), Expect = 2.8
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 29 EHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEH 73
+ + E R + + E+ A + N + ED N ++
Sbjct: 206 QAVDMTE-LRRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQY 249
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 197
Score = 24.1 bits (52), Expect = 3.4
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 35 EKFIRDFSKSYPTKEEVAKRFAVFE 59
+ ++ S+ T++E A R V +
Sbjct: 26 IQELKKE-GSFETEQETANRVQVLK 49
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.1 bits (52), Expect = 3.5
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 17/77 (22%)
Query: 38 IRDFSKSYPTKEEVAK----------RFAVFEDN-------LKLIEDLNKGEHGTATYGI 80
R +Y E++ + A + L+E + G T
Sbjct: 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 81 NHLSDLTREEMKSRLGL 97
+ +++ E +S++G
Sbjct: 64 QPIDNISLENWRSQIGF 80
>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 140
Score = 23.7 bits (51), Expect = 4.9
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 37 FIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLG 96
F+ D K ++ A+ +D L ++ D G + +K R+
Sbjct: 13 FVDDPWKHIGNEQAAAR---FHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII 69
Query: 97 L 97
+
Sbjct: 70 V 70
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 23.7 bits (51), Expect = 6.0
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 27 NPEHLKQFEKFIRDFSKSYPTKEEVAKRFA 56
+ + ++ + ++ F S EE+ R
Sbjct: 3 DQQLFEKVVEILKPFDLSVVDYEEICDRMG 32
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 23.6 bits (51), Expect = 6.4
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 18 KSNNELKTENP-EHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLN 69
++NN + +N EHL+ IR F + + + + A E + + LN
Sbjct: 188 RANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 240
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 22.4 bits (48), Expect = 7.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 26 ENPEHLKQFEKFIRDFSKSYPTKEE 50
E +HL E++I DF++ + K++
Sbjct: 40 EPEQHLVNCEEYIHDFNRRHTEKQK 64
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 23.6 bits (50), Expect = 7.5
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 12 ALFGQMKS---NNELKTENPEHLKQFEKFIRDFSKS 44
+F ++ +L+ PE + EK I+ ++
Sbjct: 105 DVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRN 140
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 109
Score = 22.9 bits (49), Expect = 8.0
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 1 MAEDASAEATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYP 46
+DAS + + L+ + + + F YP
Sbjct: 57 AGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYP 102
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa
protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 78
Score = 22.4 bits (48), Expect = 8.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 24 KTENPEHLKQFEKFIRDFSKSYPTKE 49
+T+ + +K+ EKF + KE
Sbjct: 49 RTDQAQDVKKIEKFHSQLMRLMVAKE 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.347
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,757
Number of extensions: 14616
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 26
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)