BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18109
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 202/403 (50%), Gaps = 39/403 (9%)
Query: 17 QRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIF 76
Q L+ ++ + ++ S F +T +DD F KA E LG + I+
Sbjct: 211 QSKLDELGLTPNAPAYEYLKKSGCFDVST---IDDSGEFKIIVKAMETLGLKESDQNSIW 267
Query: 77 KVVASVLKLGNVVFI-PSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFI 135
+++A++L +GN+ F + GT VS+ L L D L A+ RS+
Sbjct: 268 RILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIST 327
Query: 136 DDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLG 195
+ C ++I + +A +R++L KALY RLF ++V++ N + + K V+G
Sbjct: 328 G-VGKRC--SVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC-TTEKGPVIG 383
Query: 196 ILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEF 255
ILDIYGFE + +N FEQ INFCNEKL QLF ++ L W +E+
Sbjct: 384 ILDIYGFEVF-----QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEY 438
Query: 256 FNNSAICDIIETNSHGILSLLDE-----ESSDEAFLLKLGSYSSSLTPERGRGGVRTPGV 310
FNN IC++IE G++SLLDE +S+D+ FL + + + P +
Sbjct: 439 FNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSI-----------CKQFEKNPHL 487
Query: 311 LSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKH 370
S S D S+ CFRL+HYAG V Y+VRGF++KN + L D+ +M +S PL++
Sbjct: 488 QSYVVSK--DRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545
Query: 371 LFP-----EETRVPEAQPTRFRISILGSSTLKYSILKVCPNIV 408
LFP + + PE ++FR ++ + L ++L P+ V
Sbjct: 546 LFPPTRPEDSKKRPETAGSQFRNAM---NALITTLLACSPHYV 585
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 201/403 (49%), Gaps = 39/403 (9%)
Query: 17 QRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIF 76
Q L+ ++ + ++ S F +T +DD F KA E LG + I+
Sbjct: 211 QSKLDELGLTPNAPAYEYLKKSGCFDVST---IDDSGEFKIIVKAMETLGLKESDQNSIW 267
Query: 77 KVVASVLKLGNVVFI-PSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFI 135
+++A++L +GN+ F + GT VS+ L L D L A+ RS+
Sbjct: 268 RILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIST 327
Query: 136 DDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLG 195
+ C +I + +A +R++L KALY RLF ++V++ N + + K V+G
Sbjct: 328 G-VGKRC--EVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC-TTEKGPVIG 383
Query: 196 ILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEF 255
ILDIYGFE + +N FEQ INFCNEKL QLF ++ L W +E+
Sbjct: 384 ILDIYGFEVF-----QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEY 438
Query: 256 FNNSAICDIIETNSHGILSLLDE-----ESSDEAFLLKLGSYSSSLTPERGRGGVRTPGV 310
FNN IC++IE G++SLLDE +S+D+ FL + + + P +
Sbjct: 439 FNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSI-----------CKQFEKNPHL 487
Query: 311 LSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKH 370
S S D S+ CFRL+HYAG V Y+VRGF++KN + L D+ +M +S PL++
Sbjct: 488 QSYVVSK--DRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545
Query: 371 LFP-----EETRVPEAQPTRFRISILGSSTLKYSILKVCPNIV 408
LFP + + PE ++FR ++ + L ++L P+ V
Sbjct: 546 LFPPTRPEDSKKRPETAGSQFRNAM---NALITTLLACSPHYV 585
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 169/352 (48%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 306 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 365
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 366 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 421
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 422 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 474
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 475 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 534
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A +N
Sbjct: 535 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHENIRD 582
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 583 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 634
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 296 SPEYLKAGSLKDPGLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 356 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 411
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 412 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 464
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 465 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 524
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 525 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 572
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 573 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 624
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 297 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 356
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 357 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 412
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 413 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 465
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 466 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 525
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 526 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 573
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 574 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 625
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 296 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 356 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 411
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 412 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 464
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 465 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 524
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 525 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 572
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 573 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 624
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 296 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 355
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 356 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 411
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 412 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 464
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 465 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 524
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 525 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 572
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 573 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 624
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 306 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 365
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 366 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 421
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 422 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 474
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 475 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 534
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 535 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 582
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 583 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 634
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 293 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 352
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 353 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 408
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 409 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 461
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 462 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 521
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 522 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 569
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 570 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 621
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 294 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 353
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 354 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 409
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 410 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 462
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 463 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 522
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 523 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 570
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 571 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 622
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 168/352 (47%), Gaps = 36/352 (10%)
Query: 38 SPMFSPATS---PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSN 94
SP + A S P LDD F+R A + +G +E LD+F+VVA VL LGN+ F +
Sbjct: 297 SPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG 356
Query: 95 NIDGTEGCTVSN-DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELS 152
+ G GC + N + E C +LL +D L+ ++T+R + T+I L
Sbjct: 357 STSG--GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLK 412
Query: 153 AGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSS 212
+A R++L K +YS LF ++VNR N+ + S +G+LDI GFE ++
Sbjct: 413 VEQANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----H 465
Query: 213 NGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGI 272
N FEQF IN+CNEKL Q F + +L V + +N D+IE GI
Sbjct: 466 NSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 525
Query: 273 LSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLP 324
L +LDEE+ SD+ F +S ++ + R LS P A N
Sbjct: 526 LDILDEENRLPQPSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRD 573
Query: 325 PFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
F +RH+AG V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 574 DEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 625
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 163/340 (47%), Gaps = 33/340 (9%)
Query: 47 PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSN 106
P LDD F+R A + +G +E LD+F+VVA VL LGN+ F + + G GC + N
Sbjct: 283 PLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG--GCNLKN 340
Query: 107 -DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ E C +LL +D L+ ++T+R + T+I L +A R++L
Sbjct: 341 KSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLKVEQANNARDALA 398
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K +YS LF ++VNR N+ + S +G+LDI GFE ++ N FEQF IN+CN
Sbjct: 399 KTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----HNSFEQFCINYCN 451
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEES---- 280
EKL Q F + +L V + +N D+IE GIL +LDEE+
Sbjct: 452 EKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQ 511
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLPPFCFRLRHYAGT 336
SD+ F +S ++ + R LS P A N F +RH+AG
Sbjct: 512 PSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRDDEGFIIRHFAGA 559
Query: 337 VLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 560 VCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 599
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 163/340 (47%), Gaps = 33/340 (9%)
Query: 47 PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSN 106
P LDD F+R A + +G +E LD+F+VVA VL LGN+ F + + G GC + N
Sbjct: 282 PLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG--GCNLKN 339
Query: 107 -DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ E C +LL +D L+ ++T+R + T+I L +A R++L
Sbjct: 340 KSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLKVEQANNARDALA 397
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K +YS LF ++VNR N+ + S +G+LDI GFE ++ N FEQF IN+CN
Sbjct: 398 KTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----HNSFEQFCINYCN 450
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEES---- 280
EKL Q F + +L V + +N D+IE GIL +LDEE+
Sbjct: 451 EKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQ 510
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLPPFCFRLRHYAGT 336
SD+ F +S ++ + R LS P A N F +RH+AG
Sbjct: 511 PSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRDDEGFIIRHFAGA 558
Query: 337 VLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 559 VCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 598
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 163/340 (47%), Gaps = 33/340 (9%)
Query: 47 PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSN 106
P LDD F+R A + +G +E LD+F+VVA VL LGN+ F + + G GC + N
Sbjct: 282 PLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSG--GCNLKN 339
Query: 107 -DYELYEVC-DLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ E C +LL +D L+ ++T+R + T+I L +A R++L
Sbjct: 340 KSTQALEYCAELLGLDQDDLRVSLTTRVMLT--TAGGAKGTVIKVPLKVEQANNARDALA 397
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K +YS LF ++VNR N+ + S +G+LDI GFE ++ N FEQF IN+CN
Sbjct: 398 KTVYSHLFDHVVNRVNQCFPFETSS--YFIGVLDIAGFEYFE-----HNSFEQFCINYCN 450
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEES---- 280
EKL Q F + +L V + +N D+IE GIL +LDEE+
Sbjct: 451 EKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQ 510
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLPPFCFRLRHYAGT 336
SD+ F +S ++ + R LS P A N F +RH+AG
Sbjct: 511 PSDQHF--------TSAVHQKHKDHFR----LSIPRKSKLAIHRNIRDDEGFIIRHFAGA 558
Query: 337 VLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET 376
V Y FVEKN + LH + + S+ ++ LF T
Sbjct: 559 VCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESST 598
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 320 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 375
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 376 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDIYGFE + N FEQ IN+ NEKL
Sbjct: 429 LFLWLVKKINNVL----CQERKAYFIGVLDIYGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 320 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 375
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 376 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDIYGFE + N FEQ IN+ NEKL
Sbjct: 429 LFLWLVKKINNVL----CQERKAYFIGVLDIYGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 158/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 317 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 372
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 373 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 425
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDIYGFE + N FEQ IN+ NEK
Sbjct: 426 GRLFLWLVKKINNVL----CQERKAYFIGVLDIYGFEIF-----KVNSFEQLCINYTNEK 476
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 477 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 536
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 537 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 578
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 169/366 (46%), Gaps = 55/366 (15%)
Query: 22 NYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVAS 81
NY+FL + V P+ P D F T +A +GFT +E I +VV+S
Sbjct: 311 NYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSS 357
Query: 82 VLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHED 141
VL+LGN+VF N D ++ ++ +VC L+ ++ T +RS+ P
Sbjct: 358 VLQLGNIVFKKERNTDQ---ASMPDNTAAQKVCHLMGINVTDF-----TRSILT--PRIK 407
Query: 142 CGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAV-KVKPSGKRKVLGILDIY 200
G ++ + +A +L KA + RLF +I+ R NKA+ K K G LGILDI
Sbjct: 408 VGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGA-SFLGILDIA 466
Query: 201 GFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSA 260
GFE ++ N FEQ IN+ NEKL QLF M W +++F +
Sbjct: 467 GFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQ 521
Query: 261 IC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLS 312
C ++IE TN G+L+LLDEE ++D +F+ KL ++ G +
Sbjct: 522 PCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL---------------IQEQGNHA 566
Query: 313 TPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ FC + HYAG V YN ++ KN + L+ +V+ + S + L+
Sbjct: 567 KFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLW 624
Query: 373 PEETRV 378
+ R+
Sbjct: 625 KDVDRI 630
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 57/378 (15%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
NDL L NY+FL + V P+ P D F T +A +GFT
Sbjct: 302 NDL----LLEGFNNYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFT 344
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
+E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I
Sbjct: 345 EEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSI 401
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
+ P G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 402 LT-------PRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 454
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXX 248
LGILDI GFE ++ N FEQ IN+ NEKL QLF M
Sbjct: 455 QGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509
Query: 249 XWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPER 300
W +++F + C ++IE TN G+L+LLDEE ++D +F+ KL
Sbjct: 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL----------- 558
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
++ G + + FC + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 559 ----IQEQGNHAKFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLL 612
Query: 361 YTSQHPLLKHLFPEETRV 378
S + L+ + R+
Sbjct: 613 NQSSDKFVADLWKDVDRI 630
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 57/378 (15%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
NDL L NY+FL + V P+ P D F T +A +GFT
Sbjct: 302 NDL----LLEGFNNYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFT 344
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
+E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I
Sbjct: 345 EEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSI 401
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
+ P G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 402 LT-------PRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 454
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXX 248
LGILDI GFE ++ N FEQ IN+ NEKL QLF M
Sbjct: 455 QGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509
Query: 249 XWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPER 300
W +++F + C ++IE TN G+L+LLDEE ++D +F+ KL
Sbjct: 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL----------- 558
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
++ G + + FC + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 559 ----IQEQGNHAKFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLL 612
Query: 361 YTSQHPLLKHLFPEETRV 378
S + L+ + R+
Sbjct: 613 NQSSDKFVADLWKDVDRI 630
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 57/378 (15%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
NDL L NY+FL + V P+ P D F T +A +GFT
Sbjct: 302 NDL----LLEGFNNYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFT 344
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
+E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I
Sbjct: 345 EEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSI 401
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
+ P G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 402 LT-------PRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 454
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXX 248
LGILDI GFE ++ N FEQ IN+ NEKL QLF M
Sbjct: 455 QGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509
Query: 249 XWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPER 300
W +++F + C ++IE TN G+L+LLDEE ++D +F+ KL
Sbjct: 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL----------- 558
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
++ G + + FC + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 559 ----IQEQGNHAKFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLL 612
Query: 361 YTSQHPLLKHLFPEETRV 378
S + L+ + R+
Sbjct: 613 NQSSDKFVADLWKDVDRI 630
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 57/378 (15%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
NDL L NY+FL + V P+ P D F T +A +GFT
Sbjct: 302 NDL----LLEGFNNYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFT 344
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
+E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I
Sbjct: 345 EEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSI 401
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
+ P G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 402 LT-------PRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 454
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXX 248
LGILDI GFE ++ N FEQ IN+ NEKL QLF M
Sbjct: 455 QGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509
Query: 249 XWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPER 300
W +++F + C ++IE TN G+L+LLDEE ++D +F+ KL
Sbjct: 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL----------- 558
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
++ G + + FC + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 559 ----IQEQGNHAKFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLL 612
Query: 361 YTSQHPLLKHLFPEETRV 378
S + L+ + R+
Sbjct: 613 NQSSDKFVADLWKDVDRI 630
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 157/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D+ F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 320 DEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 375
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 376 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 429 LFLWLVKKINNVL----CSERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D+ F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDEEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CSERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 57/378 (15%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
NDL L NY+FL + V P+ P D F T +A +GFT
Sbjct: 302 NDL----LLEGFNNYTFLSNGHV-------PI------PAQQDDEMFQETLEAMTIMGFT 344
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
+E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I
Sbjct: 345 EEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSI 401
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
+ P G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 402 LT-------PRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKR 454
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXX 248
LGILDI GFE ++ N FEQ IN+ NEKL QLF M
Sbjct: 455 QGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGI 509
Query: 249 XWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPER 300
W +++F + C ++IE TN G+L+LLDEE ++D +F+ KL
Sbjct: 510 EWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL----------- 558
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
++ G + + FC + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 559 ----IQEQGNHAKFQKSKQLKDKTEFC--ILHYAGKVTYNASAWLTKNMDPLNDNVTSLL 612
Query: 361 YTSQHPLLKHLFPEETRV 378
S + L+ + R+
Sbjct: 613 NQSSDKFVADLWKDVDRI 630
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D+ F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CSERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKVEQEKYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D+ F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CSERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 331 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 386
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 387 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 439
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 440 LFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 490
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 491 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 550
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 551 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 592
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 593 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 317 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 372
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 373 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 425
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 426 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 476
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 477 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 536
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 537 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 578
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 331 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 386
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 387 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 439
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 440 LFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 490
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 491 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 550
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 551 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 592
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 593 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 329 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 384
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 385 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 437
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 438 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 488
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 489 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 548
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 549 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 590
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 317 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 372
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 373 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 425
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 426 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 476
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 477 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 536
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 537 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 578
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 427 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 477
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 478 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 537
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 538 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 579
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 580 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 329 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 384
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 385 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 437
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 438 GRLFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 488
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 489 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 548
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 549 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 590
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 591 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 623
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 319 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 374
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 375 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 427
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 428 LFLWLVKKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 478
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 479 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 538
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 539 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 580
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 581 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 320 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 375
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 376 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 429 LFLWLVKKINNVL----CQERKAYFIGVLDIEGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 320 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 375
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 376 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 429 LFLWLVKKINNVL----CEERKAYFIGVLDIEGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 43/331 (12%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D+ F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 318 VSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 373
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 374 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 426
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
RLF ++V + N + + + +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 427 GRLFLWLVKKINNVLCSERAA--YFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 479
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 480 QFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 539
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 540 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 581
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 582 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 612
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 47/331 (14%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + + L
Sbjct: 319 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKTAL 374
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
+ ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY R
Sbjct: 375 NAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 427
Query: 171 LFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
LF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEKL
Sbjct: 428 LFLWLVIKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEKLQ 478
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES-----S 281
Q F M W +++F ++ A D+I+ GIL+LLDE+S +
Sbjct: 479 QFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNAT 538
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
D + KL S+ S + P T F + HYAG V+Y +
Sbjct: 539 DNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMYEI 580
Query: 342 RGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+ ++EKN + L +D+ L S ++ LF
Sbjct: 581 QDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 318 TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 378 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNMNQVVNSVGALA 427
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R NK + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 428 KSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 481
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 482 ERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 540
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F KL Y + + R PG + P+ P F L HYAG V
Sbjct: 541 KADDKSFQDKL--YQNHMGKNR---MFTKPGKPTRPNQG-------PAHFELHHYAGNVP 588
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G++EKN + ++ +V + S+ PL+ LF PEE
Sbjct: 589 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 627
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 47/333 (14%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG + +
Sbjct: 317 VSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG----AGEGAVLKDKT 372
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L + ++ ++L+ A+ +P G L+ L+ +++ +R++L KALY
Sbjct: 373 ALNAASTVFGVNPSVLEKALM-------EPRILAGRDLVAQHLNVEKSSSSRDALVKALY 425
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKV--LGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
RLF ++V + N + +RK +G+LDI GFE + N FEQ IN+ NEK
Sbjct: 426 GRLFLWLVIKINNVL----CQERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTNEK 476
Query: 227 LHQLFTDVMLXXXXXXXXXXXXXWCYVEF-FNNSAICDIIETNS-HGILSLLDEES---- 280
L Q F M W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 477 LQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN 536
Query: 281 -SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+D + KL S+ S + P T F + HYAG V+Y
Sbjct: 537 ATDNTLITKLHSHFS-----KKNAKYEEPRFSKTE-------------FGVTHYAGQVMY 578
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
++ ++EKN + L +D+ L S ++ LF
Sbjct: 579 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLF 611
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 318 TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 378 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNMNQVVNSVGALA 427
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R NK + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 428 KSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 481
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 482 ERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 540
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F KL Y + + R PG + P+ P F L HYAG V
Sbjct: 541 KADDKSFQDKL--YQNHMGKNR---MFTKPGKPTRPNQG-------PAHFELHHYAGNVP 588
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G++EKN + ++ +V + S+ PL+ LF PEE
Sbjct: 589 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 627
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 318 TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 377
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 378 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNMNQVVNSVGALA 427
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R NK + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 428 KSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 481
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 482 ERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 540
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F KL Y + + R PG + P+ P F L HYAG V
Sbjct: 541 KADDKSFQDKL--YQNHMGKNR---MFTKPGKPTRPNQG-------PAHFELHHYAGNVP 588
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G++EKN + ++ +V + S+ PL+ LF PEE
Sbjct: 589 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 627
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 313 TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 372
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 373 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNMNQVVNSVGALA 422
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R NK + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 423 KSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 476
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 477 ERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 535
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F KL Y + + R PG + P+ P F L HYAG V
Sbjct: 536 KADDKSFQDKL--YQNHMGKNR---MFTKPGKPTRPNQG-------PAHFELHHYAGNVP 583
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G++EKN + ++ +V + S+ PL+ LF PEE
Sbjct: 584 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 622
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 162/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 314 TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGT 373
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 374 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNMNQVVNSVGALA 423
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R NK + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 424 KSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 477
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 478 ERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 536
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F KL Y + + R PG + P+ P F L HYAG V
Sbjct: 537 KADDKSFQDKL--YQNHMGKNR---MFTKPGKPTRPNQG-------PAHFELHHYAGNVP 584
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G++EKN + ++ +V + S+ PL+ LF PEE
Sbjct: 585 YSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 623
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 43/337 (12%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+DD + TR+AC LG + + IF+++A +L LGNV F + ++ C + +
Sbjct: 299 IDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRD----SDSCAIPPKH 354
Query: 109 E-LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKAL 167
+ L CDL+ +D + + R L + + +S A R++L K +
Sbjct: 355 DPLTIFCDLMGVDYEEMAHWLCHRKL-------ATATETYIKPISKLHAINARDALAKHI 407
Query: 168 YSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKL 227
Y+ LF +IV+ NKA+ + +G+LDIYGFE ++ N FEQF IN+ NEKL
Sbjct: 408 YANLFNWIVDHVNKALH-STVKQHSFIGVLDIYGFETFE-----INSFEQFCINYANEKL 461
Query: 228 HQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSD 282
Q F + W ++F++N ++IE G+L LLDEE SD
Sbjct: 462 QQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKM-GVLDLLDEECKMPKGSD 520
Query: 283 EAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVR 342
+ + KL Y++ L + P L F ++H+A V Y
Sbjct: 521 DTWAQKL--YNTHLN---------KCALFEKP-------RLSNKAFIIKHFADKVEYQCE 562
Query: 343 GFVEKNGELLHRD-VSLAMYTSQHPLLKHLFPEETRV 378
GF+EKN + ++ + + + + + LL LF +E +
Sbjct: 563 GFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKA 599
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 384 TRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDV-----SVFELEEFRRDR 438
+R+R+ + L + C N++++ +D+ K G + V LE+ R D+
Sbjct: 709 SRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQF-GKTKIFFRAGQVAYLEKIRADK 766
Query: 439 LVDLAVLIQKVWRGYHQRKDFLKRKRSQIII 469
L + IQK RG+ RK +++ +R+ I I
Sbjct: 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITI 797
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 43/337 (12%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+DD + TR+AC LG + + IF+++A +L LGNV F + ++ C + +
Sbjct: 299 IDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRD----SDSCAIPPKH 354
Query: 109 E-LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKAL 167
+ L CDL+ +D + + R L + + +S A R++L K +
Sbjct: 355 DPLTIFCDLMGVDYEEMAHWLCHRKL-------ATATETYIKPISKLHAINARDALAKHI 407
Query: 168 YSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKL 227
Y+ LF +IV+ NKA+ + +G+LDIYGFE ++ N FEQF IN+ NEKL
Sbjct: 408 YANLFNWIVDHVNKALH-STVKQHSFIGVLDIYGFETFE-----INSFEQFCINYANEKL 461
Query: 228 HQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSD 282
Q F + W ++F++N ++IE G+L LLDEE SD
Sbjct: 462 QQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKM-GVLDLLDEECKMPKGSD 520
Query: 283 EAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVR 342
+ + KL Y++ L + P L F ++H+A V Y
Sbjct: 521 DTWAQKL--YNTHLN---------KCALFEKP-------RLSNKAFIIKHFADKVEYQCE 562
Query: 343 GFVEKNGELLHRD-VSLAMYTSQHPLLKHLFPEETRV 378
GF+EKN + ++ + + + + + LL LF +E +
Sbjct: 563 GFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKA 599
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 384 TRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDV-----SVFELEEFRRDR 438
+R+R+ + L + C N++++ +D+ K G + V LE+ R D+
Sbjct: 709 SRYRVLMKQKDVLS-DRKQTCKNVLEKLILDKDKYQF-GKTKIFFRAGQVAYLEKIRADK 766
Query: 439 LVDLAVLIQKVWRGYHQRKDFLKRKR 464
L + IQK RG+ RK +++ +R
Sbjct: 767 LRAACIRIQKTIRGWLMRKKYMRMRR 792
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 43/337 (12%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+DD + TR+AC LG + + IF+++A +L LGNV F + ++ C + +
Sbjct: 299 IDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRD----SDSCAIPPKH 354
Query: 109 E-LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKAL 167
+ L CDL+ +D + + R L + + +S A R++L K +
Sbjct: 355 DPLTIFCDLMGVDYEEMAHWLCHRKL-------ATATETYIKPISKLHAINARDALAKHI 407
Query: 168 YSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKL 227
Y+ LF +IV+ NKA+ + +G+LDIYGFE ++ N FEQF IN+ NEKL
Sbjct: 408 YANLFNWIVDHVNKALH-STVKQHSFIGVLDIYGFETFE-----INSFEQFCINYANEKL 461
Query: 228 HQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSD 282
Q F + W ++F++N ++IE G+L LLDEE SD
Sbjct: 462 QQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKM-GVLDLLDEECKMPKGSD 520
Query: 283 EAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVR 342
+ + KL Y++ L + P L F ++H+A V Y
Sbjct: 521 DTWAQKL--YNTHLN---------KCALFEKP-------RLSNKAFIIKHFADKVEYQCE 562
Query: 343 GFVEKNGELLHRD-VSLAMYTSQHPLLKHLFPEETRV 378
GF+EKN + ++ + + + + + LL LF +E +
Sbjct: 563 GFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKA 599
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 41/340 (12%)
Query: 43 PATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGC 102
P++SP ++ F T ++ LGF+ +EI+ + ++V++VL+ GN+ N D
Sbjct: 289 PSSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQ---A 344
Query: 103 TVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNS 162
T+ ++ ++C LL + T SR+L P G + + +A +
Sbjct: 345 TMPDNTAAQKLCRLLGLGVTDF-----SRALLT--PRIKVGRDYVQKAQTKEQADFALEA 397
Query: 163 LCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINF 222
L KA Y RLF ++V R N+A+ P LGILDI GFE + N FEQ IN+
Sbjct: 398 LAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIF-----QLNSFEQLCINY 452
Query: 223 CNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIE--TNSHGILSLLDEE 279
NEKL QLF M W +++F + C D+IE N G+L+LLDEE
Sbjct: 453 TNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEE 512
Query: 280 -----SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYA 334
++D++F+ K+ G + P L + F + HYA
Sbjct: 513 CWFPKATDKSFVEKVAQEQG------GHPKFQRPRHLRDQAD-----------FSVLHYA 555
Query: 335 GTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPE 374
G V Y ++ KN + L+ +V+ ++ S L ++ +
Sbjct: 556 GKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD 595
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 161/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 319 TVDNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGT 378
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 379 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNLQQVINSVGALS 428
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R N+ + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 429 KSLYDRMFNWLVKRVNRTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 482
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 483 ERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFP 541
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F + SY + + R PG + P+ F L HYAG V
Sbjct: 542 KADDKSF--QDYSYQNHIGKNR---MFTKPGKPTRPNQGHAH-------FELHHYAGNVP 589
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G+++KN + ++ +V + S+ PL+ LF P+E
Sbjct: 590 YSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRAPDE 628
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 161/339 (47%), Gaps = 37/339 (10%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T ++DD F +A + LGFT +E +FK AS+L +G + F + E
Sbjct: 320 TVDNIDDVEEFKLCDEAFDILGFTKEEKTSMFKCTASILHMGEMKFKQRPREEQAESDGT 379
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ ++ +C + + D +L+ + P G+ ++ + + + +L
Sbjct: 380 AEAEKVAFLCGINAGD--LLKALLK--------PKVKVGTEMVTKGQNLQQVINSVGALS 429
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
K+LY R+F ++V R N+ + K + + +G+LDI GFE +D N FEQ IN+ N
Sbjct: 430 KSLYDRMFNWLVKRVNRTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTN 483
Query: 225 EKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDEE---- 279
E+L Q F M W +++F + +C D+IE GILS+L+EE
Sbjct: 484 ERLQQFFNHHMFVLEQEEYKKEGIQWEFIDFGMDLQMCIDLIE-KPMGILSILEEECMFP 542
Query: 280 -SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ D++F + SY + + R PG + P+ F L HYAG V
Sbjct: 543 KADDKSF--QDYSYQNHIGKNR---MFTKPGKPTRPNQGHAH-------FELHHYAGNVP 590
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF--PEE 375
Y++ G+++KN + ++ +V + S+ PL+ LF P+E
Sbjct: 591 YSIAGWLDKNKDPINENVVSLLAVSKEPLVAELFRAPDE 629
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 142/319 (44%), Gaps = 39/319 (12%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTE--GC 102
T P +DD+ + T A + LGF+ DE I+K+ +V+ GN+ F + E G
Sbjct: 318 TVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGT 377
Query: 103 TVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNS 162
V++ + L+ ++ L A+ P G+ + + + + +
Sbjct: 378 EVAD-----KAAYLMGLNSAELLKALCY-------PRVKVGNEFVTKGQTVSQVHNSVGA 425
Query: 163 LCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINF 222
L KA+Y ++F ++V R N+ + K ++ +G+LDI GFE +D N FEQ INF
Sbjct: 426 LAKAVYEKMFLWMVIRINQQLDTKQP-RQYFIGVLDIAGFEIFD-----FNSFEQLCINF 479
Query: 223 CNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE--- 279
NEKL Q F M W +++F + A C + GI S+L+EE
Sbjct: 480 TNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMF 539
Query: 280 --SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTV 337
++D +F KL Y L P A G F L HYAGTV
Sbjct: 540 PKATDTSFKNKL--YDQHLGKSNN---------FQKPKPAKGKAEA---HFSLVHYAGTV 585
Query: 338 LYNVRGFVEKNGELLHRDV 356
YN+ G++EKN + L+ V
Sbjct: 586 DYNISGWLEKNKDPLNETV 604
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 36/329 (10%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+DD+ T A + LGFT +E L ++K +L LG + + +G
Sbjct: 327 IDDEEEMGLTDTAFDVLGFTDEEKLSMYKCTGCILHLGEMKWKQRGEQAEADGTA----- 381
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
E +V LL ++ L + P G+ + + + T + +L K+LY
Sbjct: 382 EAEKVAFLLGVNAGDLLKCLLK-------PKIKVGTEYVTQGRNKDQVTNSIAALAKSLY 434
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
R+F ++V R N+ + K + ++ +G+LDI GFE +D N FEQ IN+ NE+L
Sbjct: 435 DRMFNWLVRRVNQTLDTK-AKRQFFIGVLDIAGFEIFD-----FNSFEQLCINYTNERLQ 488
Query: 229 QLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSDE 283
Q F M W +++F + C + GILS+L+EE +SD
Sbjct: 489 QFFNHHMFVLEQEEYKKEGIVWEFIDFGLDLQACIELIEKPMGILSILEEECMFPKASDT 548
Query: 284 AFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRG 343
+F KL P G+ P AG + FC L HYAG+V Y++ G
Sbjct: 549 SFKNKLYDNHLGKNPMFGK---------PKPPKAGCAEA--HFC--LHHYAGSVSYSIAG 595
Query: 344 FVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
+++KN + ++ +V + S+ P++K LF
Sbjct: 596 WLDKNKDPINENVVELLQNSKEPIVKMLF 624
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 142/339 (41%), Gaps = 47/339 (13%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFI-----PSNNIDGT 99
T +DD + T A + LGFT +E ++K+ +++ GN+ F DGT
Sbjct: 319 TVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGT 378
Query: 100 EGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVT 159
E S DLL C P G+ + + +
Sbjct: 379 EEADKSAYLMGLNSADLLKGLC---------------HPRVKVGNEYVTKGQNVQQVIYA 423
Query: 160 RNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFI 219
+L KA+Y R+F ++V R N ++ K ++ +G+LDI GFE +D N FEQ
Sbjct: 424 TGALAKAVYERMFNWMVTRINATLETKQP-RQYFIGVLDIAGFEIFD-----FNSFEQLC 477
Query: 220 INFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAIC-DIIETNSHGILSLLDE 278
INF NEKL Q F M W +++F + C D+IE GI+S+L+E
Sbjct: 478 INFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMSILEE 536
Query: 279 E-----SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHY 333
E ++D F KL + + L P + G P F L HY
Sbjct: 537 ECMFPKATDMTFKAKL--FDNHLGKSAN---------FQKPRNIKGK---PEAHFSLIHY 582
Query: 334 AGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
AG V YN+ G+++KN + L+ V S LL LF
Sbjct: 583 AGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLF 621
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 138/319 (43%), Gaps = 39/319 (12%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTE--GC 102
T P +DD+ + T A + LGF+ DE I+ + +V+ GN+ F + E G
Sbjct: 321 TVPSIDDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGT 380
Query: 103 TVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNS 162
V+ D Y L+ ++ L A+ P G+ + + E + +
Sbjct: 381 EVA-DXAAY----LMGLNSAELLKALCY-------PRVGVGNEAVTXGETVSEVHNSVGA 428
Query: 163 LCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINF 222
L A+Y +F ++V R N+ + K ++ +G+LDI GFE +D N FEQ INF
Sbjct: 429 LAXAVYEXMFLWMVIRINQQLDTKQP-RQYFIGVLDIAGFEIFD-----FNSFEQLCINF 482
Query: 223 CNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE--- 279
NE L Q F M W +++F + A C + GI S+L+EE
Sbjct: 483 TNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIEXPMGIFSILEEECMF 542
Query: 280 --SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTV 337
++D +F L Y L P A G F L HYAGTV
Sbjct: 543 PKATDTSFXNXL--YDEHLGKSNN---------FQKPKPAKGKAEA---HFSLVHYAGTV 588
Query: 338 LYNVRGFVEKNGELLHRDV 356
YN+ G++E N + L+ V
Sbjct: 589 DYNISGWLEXNXDPLNETV 607
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 138/319 (43%), Gaps = 39/319 (12%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTE--GC 102
T P +DD+ + T A + LGF+ DE I+ + +V+ GN+ F + E G
Sbjct: 318 TVPSIDDQEELMATDSAIDILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREEQAEPDGT 377
Query: 103 TVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNS 162
V+ D Y L+ ++ L A+ P G+ + + E + +
Sbjct: 378 EVA-DXAAY----LMGLNSAELLKALCY-------PRVGVGNEAVTXGETVSEVHNSVGA 425
Query: 163 LCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINF 222
L A+Y +F ++V R N+ + K ++ +G+LDI GFE +D N FEQ INF
Sbjct: 426 LAXAVYEXMFLWMVIRINQQLDTKQP-RQYFIGVLDIAGFEIFD-----FNSFEQLCINF 479
Query: 223 CNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEFFNNSAICDIIETNSHGILSLLDEE--- 279
NE L Q F M W +++F + A C + GI S+L+EE
Sbjct: 480 TNEXLQQFFNHHMFVLEQEEYXXEGIEWEFIDFGMDLAACIELIEXPMGIFSILEEECMF 539
Query: 280 --SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTV 337
++D +F L Y L P A G F L HYAGTV
Sbjct: 540 PKATDTSFXNXL--YDEHLGKSNN---------FQKPKPAKGKAEA---HFSLVHYAGTV 585
Query: 338 LYNVRGFVEKNGELLHRDV 356
YN+ G++E N + L+ V
Sbjct: 586 DYNISGWLEXNXDPLNETV 604
>pdb|4FBD|A Chain A, 2.35 Angstrom Crystal Structure Of Conserved Hypothetical
Protein From Toxoplasma Gondii Me49.
pdb|4FBD|B Chain B, 2.35 Angstrom Crystal Structure Of Conserved Hypothetical
Protein From Toxoplasma Gondii Me49
Length = 243
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 311 LSTPSSAGGDNSLPPFCFRL---RHYAGTVLYNV--RGFVEKNGELLHRDVSLAMYTSQH 365
L P+ A L PFC+R Y G+ + V F+EK EL+ RD + +
Sbjct: 28 LGRPAPADLPLGLDPFCYRQFDDPAYGGSRISGVTKEEFLEKVNELVTRDAGIEFFQGYA 87
Query: 366 PLLKHLF 372
P +HL+
Sbjct: 88 PFCRHLY 94
>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
pdb|2O0R|B Chain B, The Three-Dimensional Structure Of
N-Succinyldiaminopimelate Aminotransferase From
Mycobacterium Tuberculosis
Length = 411
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 117 LSMDCTILQGAIT--SRSLFIDDPHEDCGSTLIVTEL 151
++D L+ A+T +R+L I+ PH G+ L TEL
Sbjct: 146 FALDADALRRAVTPRTRALIINSPHNPTGAVLSATEL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,313,813
Number of Sequences: 62578
Number of extensions: 646200
Number of successful extensions: 1535
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 102
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)