RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18109
(602 letters)
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 311 bits (800), Expect = 1e-97
Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 56/394 (14%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
L+ L LQ+ E Y +L S + T +DDK F T+ A + +GF+
Sbjct: 203 QLLRELGLQKP-EYYYYLNQSQCY------------TVDGIDDKKDFKETQNAMKVIGFS 249
Query: 69 PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
DE +IF++VA++L LGNV F + + +S+ L LL +D + L+ A+
Sbjct: 250 EDEQDEIFRIVAAILHLGNVQFAENGD----GAAVISDKDVLDFAAYLLGVDPSELEKAL 305
Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
TSR++ + + L+ +A TR++L KA+YSRLF ++V+R NKA++VK
Sbjct: 306 TSRTI---ETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSP 362
Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENI 248
GK KV+G+LDIYGFE + N FEQF IN+ NEKL Q+F ++ L+ EQEEY RE I
Sbjct: 363 GKNKVIGVLDIYGFEIFQ-----KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGI 417
Query: 249 EWCYVEFFNNSAICDIIETNSH-GILSLLDE------ESSDEAFLLKLGSYSSSLTPERG 301
+W +E+FNN +CD+IE GI S+LD+ E +D+ FL KL SS
Sbjct: 418 KWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDH 477
Query: 302 RGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMY 361
FR++HYAG V Y+V GF +KN + L +D+ M
Sbjct: 478 FSSGSD-------------------EFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQ 518
Query: 362 TSQHPLLKHLFPEE-----TRVPEAQPTRFRISI 390
+S +P L+ LFPE+ + P + + S
Sbjct: 519 SSSNPFLRSLFPEKSDADSKKRPTTAGFKIKTSA 552
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 305 bits (784), Expect = 3e-95
Identities = 128/380 (33%), Positives = 186/380 (48%), Gaps = 51/380 (13%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
++ K L L+ E+Y +L ++ + DD F T
Sbjct: 201 QLLAGASEELKKELGLKS-PEDYRYLNQG---GCLTVDGI---------DDAEEFKETLN 247
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A LGF+ +E IFK++A++L LGN+ F N TV + EL +LL +D
Sbjct: 248 AMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRN--DNAASTVKDKEELSNAAELLGVD 305
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
L+ A+T R + G +I L+ +A R++L KALYSRLF ++V R N
Sbjct: 306 PEELEKALTKRKIKT-------GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRIN 358
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
+++ K G +G+LDIYGFE ++ N FEQ IN+ NEKL Q F + + EQ
Sbjct: 359 QSLSFKD-GSTYFIGVLDIYGFEIFE-----VNSFEQLCINYANEKLQQFFNQHVFKLEQ 412
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
EEY RE I+W +++FF+N D+IE GILSLLDEE +D+ FL KL +
Sbjct: 413 EEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKGTDQTFLEKLNQHHKK 472
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
S P G F ++HYAG V Y+V GF+EKN + L D
Sbjct: 473 HP------------HFSKPKKKGRT------EFIIKHYAGDVTYDVTGFLEKNKDTLSDD 514
Query: 356 VSLAMYTSQHPLLKHLFPEE 375
+ + +S++PL+ LFP
Sbjct: 515 LIELLQSSKNPLIASLFPSG 534
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 277 bits (710), Expect = 2e-84
Identities = 137/393 (34%), Positives = 192/393 (48%), Gaps = 52/393 (13%)
Query: 11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
K L L ++ ++Y++L S T P +DD F TR A + +GFT +
Sbjct: 205 KKELGL-KDPKDYAYLSQS------------GCYTVPGIDDAEEFKDTRSALKIIGFTDE 251
Query: 71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
E IF+V+A++L LGN+ F E V + EL + LL +D L+ A+
Sbjct: 252 EQRSIFRVLAAILHLGNIKFK---QDQNEEQAVVEDTEELEIIAGLLGVDPEELEKALLK 308
Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
R + G + + +A R++L KA+YSRLF +IV + N+A+ K
Sbjct: 309 RRIKT-------GRETVTKPQNVEQARYARDALAKAIYSRLFDWIVGKINEALSAKLQKA 361
Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
+G+LDIYGFE ++ N FEQ IN+ NEKL Q F M + EQEEY RE I W
Sbjct: 362 AAFIGVLDIYGFEIFEK-----NSFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAW 416
Query: 251 CYVEF-FNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGG 304
++++ +N A D+IE GILSLLDEE +D+ FL KL SS P
Sbjct: 417 TFIDYGLDNQACIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLLDTFSSKHP------ 470
Query: 305 VRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQ 364
S P GD F ++HYAG V YN GF+EKN + L D+ + +S
Sbjct: 471 -----HFSKPRFGQGDT-----SFTVKHYAGDVEYNATGFLEKNKDPLFDDLISLLKSSS 520
Query: 365 HPLLKHLFPEETRVPEAQPTRFRISILGSSTLK 397
PL+ LFPEE E R+ + LG K
Sbjct: 521 DPLVLELFPEEELDEEEFAGRY--ARLGCGKGK 551
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 272 bits (698), Expect = 1e-82
Identities = 127/389 (32%), Positives = 194/389 (49%), Gaps = 50/389 (12%)
Query: 2 FVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKA 61
++ + K L L+R E+Y +L +DD F ++A
Sbjct: 194 LLAGASPEERKKLGLKRP-ESYRYLNQG------------GCNDVDGIDDAEEFEELKEA 240
Query: 62 CEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDC 121
++LGF+ +EI IF+++A++L LGN+ F S +G E V N L + +LL +D
Sbjct: 241 LKSLGFSEEEIESIFRILAAILHLGNIEFK-SVGGEGQEAAEVKNTEVLSKAAELLGLDP 299
Query: 122 TILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNK 181
L+ A+T + + G +I L+ EA +R+SL KALYSRLF +IV+R N
Sbjct: 300 EELEEALTYKVTKV-------GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINS 352
Query: 182 AVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQE 241
++K K +GILDI+GFE ++ N FEQ IN+ NEKL Q F + + EQE
Sbjct: 353 SLKPKDGRSL-FIGILDIFGFEIFE-----KNSFEQLCINYANEKLQQFFNQHVFKLEQE 406
Query: 242 EYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSSL 296
EY+ E I+W ++F +N + D+IE G+LSLLDEE +DE FL KL
Sbjct: 407 EYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKL------- 459
Query: 297 TPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDV 356
L + ++ P F ++HYAG V Y+ RGF+EKN ++L ++
Sbjct: 460 -----------NNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPEL 508
Query: 357 SLAMYTSQHPLLKHLFPEETRVPEAQPTR 385
+ +S +P ++ LF E T
Sbjct: 509 VSLLKSSSNPFIRELFESELSKTGNSSTG 537
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 238 bits (609), Expect = 1e-69
Identities = 120/378 (31%), Positives = 174/378 (46%), Gaps = 60/378 (15%)
Query: 11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
+L L N +Y +L + T P +DD F T +A + LGF+ +
Sbjct: 217 KSMLLLTGNPNDYRYLSQGEL-------------TIPGVDDAEEFKLTDEAFDILGFSDE 263
Query: 71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
E IFK+VA++L LGN+ F + E + E + LL ++ L A+
Sbjct: 264 EKNSIFKIVAAILHLGNIKFKQRQREEQAE---LDGTEEADKAAHLLGVNSADLLKALLH 320
Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
P G + + + + + +L KALY RLF ++V R NK + K
Sbjct: 321 -------PRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRA 373
Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
+G+LDI GFE +D N FEQ IN+ NEKL Q F M EQEEY+RE IEW
Sbjct: 374 Y-FIGVLDIAGFEIFD-----FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEW 427
Query: 251 CYVEFFNNSAIC-DIIETNSHGILSLLDEE-----SSDEAFLLKL----GSYSSSLTPER 300
+++F + D+IE N GILSLLDEE ++D+ F+ KL S P++
Sbjct: 428 TFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKKPKK 487
Query: 301 GRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAM 360
G+ A F L HYAGTV YN+ G++EKN + L+ +V +
Sbjct: 488 GKA------------KAH---------FSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLL 526
Query: 361 YTSQHPLLKHLFPEETRV 378
S L+ LF +
Sbjct: 527 KKSSDKLVAELFKDYAEA 544
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 231 bits (591), Expect = 2e-67
Identities = 128/396 (32%), Positives = 191/396 (48%), Gaps = 52/396 (13%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
T DD F R A + L FT EI +IFK++A++L +GN+ F + +D C V
Sbjct: 223 TCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRF-EATEVDNLAACEV 281
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ L V LL + L A+TSR++F +VT LS +A R++
Sbjct: 282 DDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGET-------VVTPLSREQAVDVRDAFV 334
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGK-RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFC 223
K +Y RLF +IV + N A+ KP + R +G+LDI+GFE +D N FEQ INF
Sbjct: 335 KGIYGRLFVWIVRKINAAIY-KPVQQSRNSIGVLDIFGFENFD-----VNSFEQLCINFA 388
Query: 224 NEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES--- 280
NE L Q F + + EQEEY E+I W ++EF +N D+I I+SL+DEES
Sbjct: 389 NENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFP 448
Query: 281 --SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+D+ L KL S ++ T F + H+AG V
Sbjct: 449 KGTDQTMLEKLHS-----QHGLHSNYLKPKSTQETQ-------------FGINHFAGVVF 490
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVP----EAQPT---RFR---- 387
Y+ RGF+EKN + D+S + +S++ LK +F + + + +PT +FR
Sbjct: 491 YDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLD 550
Query: 388 --ISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCR 421
+ L SS + I + PN P + + +LC R
Sbjct: 551 LLMRTL-SSCQPFFIRCIKPNEYKEPMVFDRELCVR 585
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 232 bits (594), Expect = 2e-65
Identities = 122/376 (32%), Positives = 181/376 (48%), Gaps = 62/376 (16%)
Query: 11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
LK L L +N ++Y +L I +DD F T A + +G +
Sbjct: 271 LKKLLLLQNPKDYIYLSQGGCD-KI-----------DGIDDAKEFKITLDALKTIGIDEE 318
Query: 71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
E IFK++A++L +GN+ F N S++ L + C LL +D ++ +
Sbjct: 319 EQDQIFKILAAILHIGNIEFKEDRN----GAAIFSDNSVLDKACYLLGIDPSLFVKWLVK 374
Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
R + G IV L+ +A R+SL KALYS LF +IV+R NK++ +
Sbjct: 375 RQI-------KTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSL-DHSAAA 426
Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
+G+LDIYGFE ++ N FEQ IN+ NEKL Q F M + EQEEY +E IEW
Sbjct: 427 SNFIGVLDIYGFEIFE-----KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEW 481
Query: 251 CYVEFFNNSAICDIIE-TNSHGILSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGG 304
++++F+N D+IE N GILSLLDEE +DE+F KL
Sbjct: 482 SFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQR------------ 529
Query: 305 VRTPGVLSTPSSAGGDNSLPPFCFR-----LRHYAGTVLYNVRGFVEKNGELLHRDVSLA 359
L+ S+ FR ++HYAG V Y+V GF++KN + L+ D+
Sbjct: 530 ------LNKNSN----PKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLEL 579
Query: 360 MYTSQHPLLKHLFPEE 375
+ S + + LF +E
Sbjct: 580 LKASTNEFVSTLFDDE 595
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 385 RFRI-----SILGSSTLKYSILKVCPNIVDRPSMDEI-------KLCCRGSVDVSVFELE 432
R+RI S G T K +I++ +D K+ + V + LE
Sbjct: 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGV---LAALE 737
Query: 433 EFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWR 477
+ R +L ++A IQ+ RG + R+ +L+ + I +R
Sbjct: 738 DMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFR 782
Score = 30.4 bits (69), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 443 AVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRS 475
VLIQK R +K F K+ I + SA R
Sbjct: 845 EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV 877
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 213 bits (544), Expect = 2e-60
Identities = 116/345 (33%), Positives = 176/345 (51%), Gaps = 48/345 (13%)
Query: 50 DDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVS-NDY 108
DD F T +A LG + ++ +DIFK++A++L LGN+ + N + ++S D
Sbjct: 234 DDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN----DSSSISPKDE 289
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L C+LL +D + L+ + R + S IV L+ +A V R++L K +Y
Sbjct: 290 NLQIACELLGVDASDLRKWLVKRQI-------VTRSEKIVKPLTKEQAIVARDALAKHIY 342
Query: 169 SRLFTYIVNRTNKAVKVKPSGKR--KVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
S+LF +IV+ NK++ K+ +G+LDIYGFE ++ N FEQF IN+ NEK
Sbjct: 343 SKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFE-----KNSFEQFCINYANEK 397
Query: 227 LHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----S 281
L Q F + + EQEEY +E IEW +++F++N D+IE + GILSLLDEE S
Sbjct: 398 LQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIE-SKLGILSLLDEECRLPKGS 456
Query: 282 DEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNV 341
DE++ KL Y+ + P G S F ++H+A V Y+V
Sbjct: 457 DESWAQKL--YNKLPKKKN--------PHFEKPRF--GQTS-----FTVKHFADDVEYDV 499
Query: 342 RGFVEKNGE---LLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQP 383
GF+EKN + H DV A S++P LK + +
Sbjct: 500 DGFLEKNRDTVSDEHLDVLKA---SKNPFLKEVLDAAELASSSSS 541
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 209 bits (535), Expect = 2e-59
Identities = 115/353 (32%), Positives = 178/353 (50%), Gaps = 46/353 (13%)
Query: 49 LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDY 108
+DD +L TR+A + +G + +E IF+VVA++L LGN+ F ID + +++
Sbjct: 232 VDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEF 291
Query: 109 ELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALY 168
L +LL D L+ A+ R + P E +I L A ++R++L K +Y
Sbjct: 292 HLKTAAELLMCDEKALEDALCKRV--MVTPEE-----VITKPLDPDSAELSRDALAKTIY 344
Query: 169 SRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLH 228
SRLF ++VN+ N ++ P K ++G+LDIYGFE++ +N FEQF IN NEKL
Sbjct: 345 SRLFDWLVNKINSSIGQDPDSKS-LIGVLDIYGFESFK-----TNSFEQFCINLTNEKLQ 398
Query: 229 QLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDE-----ESSDE 283
Q F + + EQEEY +E I+W Y+EF +N + D+IE GI++LLDE +S+ E
Sbjct: 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHE 458
Query: 284 AFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRG 343
F KL Y + +R P + F + HYAG V Y
Sbjct: 459 TFAQKL--YQTFKDHKR----------FEKPKLSRTA-------FTIDHYAGDVTYQTDQ 499
Query: 344 FVEKNGELL---HRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGS 393
F++KN + + H+ + + S + LFP +PE + S +GS
Sbjct: 500 FLDKNKDYVVAEHQAL---LNASNCSFVAGLFPP---LPEETSKSSKFSSIGS 546
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 203 bits (518), Expect = 8e-57
Identities = 120/360 (33%), Positives = 178/360 (49%), Gaps = 33/360 (9%)
Query: 42 SPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEG 101
P LDD F R A + +G E LD+F+VVA VL LGN+ F + + G G
Sbjct: 251 GALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSG--G 308
Query: 102 CTVSNDYE--LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVT 159
C V N E L +LL +D L+ ++T+R + T+I L +A
Sbjct: 309 CNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAG--GAKGTVIKVPLKVEQANNA 366
Query: 160 RNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFI 219
R++L KA+YS LF ++V+R N+ + S +G+LDI GFE + N FEQF
Sbjct: 367 RDALAKAVYSHLFDHVVSRVNQCFPFETSSN--FIGVLDIAGFEYF-----EHNSFEQFC 419
Query: 220 INFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEE 279
IN+CNEKL Q F + +L+EEQE Y+RE + V + +N D+IE +GIL +LDEE
Sbjct: 420 INYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEE 479
Query: 280 S-----SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSLPPFCFRLR 331
+ SD+ F +S+ ++ + R L+ P A N F +R
Sbjct: 480 NRLPQPSDQHF--------TSVVHQKHKDHFR----LTIPRKSKLAVHRNLRDDEGFIIR 527
Query: 332 HYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISIL 391
H+AG V Y FVEKN + LH + + S+ L+ LF T + + ++S +
Sbjct: 528 HFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLRSLFESSTNNNDTKQKAGKLSFI 587
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 176 bits (448), Expect = 2e-47
Identities = 113/356 (31%), Positives = 174/356 (48%), Gaps = 51/356 (14%)
Query: 25 FLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLK 84
LKS+ + ++ S +S +DD F +A + + + ++ ++F ++A+VL
Sbjct: 211 NLKSASEYKYLKQSCCYSING---VDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLW 267
Query: 85 LGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGS 144
LGNV F +N + E D L L+ + L A+++R +
Sbjct: 268 LGNVSFTVIDNENHVE---PVADEALSTAAKLIGCNIEDLMLALSTR-------KMHVNN 317
Query: 145 TLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEA 204
IV +L+ +A R++L K++Y+ LF ++V + NK+++V + + ILDIYGFE+
Sbjct: 318 DNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377
Query: 205 YDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDI 264
+D N FEQF IN+ NE+L Q F + + EQEEY + I+W VEF +N D+
Sbjct: 378 FD-----KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDL 432
Query: 265 IETNSHGILSLLDEES-----SDEAFLLKLG---SYSSSLTPERGRGGVRTPGVLSTPSS 316
E G+LSLLDEES +D F KL +S ERG
Sbjct: 433 FEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGA------------- 479
Query: 317 AGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
F +RHYAG V Y+ GF+EKN +LLH D S+ + +S L LF
Sbjct: 480 -----------FTVRHYAGEVTYDTTGFLEKNRDLLHSD-SIQLLSSCKCQLPQLF 523
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 175 bits (444), Expect = 7e-47
Identities = 99/333 (29%), Positives = 148/333 (44%), Gaps = 45/333 (13%)
Query: 50 DDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYE 109
D+K F R ++A E +GF IF V+++VL LGNV + E V N
Sbjct: 239 DEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEV 298
Query: 110 LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYS 169
+ + LL + L A+T + TLI+ S EA R+++ K LYS
Sbjct: 299 VDLLSQLLKVKRETLMEALTKKR------TVTVNETLIL-PYSLSEAITARDAMAKCLYS 351
Query: 170 RLFTYIVNRTNKAV--KVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKL 227
LF +IV R N A+ K + +G+LDI+GFE + G N FEQ IN+ NE+L
Sbjct: 352 ALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDF----GRCNSFEQLCINYANEQL 407
Query: 228 HQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SD 282
F + + EQEEY+ E I W +E+ +N + G+L LLDEES +
Sbjct: 408 QYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATS 467
Query: 283 EAFLLKLGSYSSS----LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVL 338
+ L K P+ + P F ++HYAG V
Sbjct: 468 QTLLAKFNQQHKDNKYYEGPQV-----KEPA------------------FIIQHYAGKVK 504
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHL 371
Y ++ F EKN +L+ +D+ + S ++ L
Sbjct: 505 YQIKDFREKNMDLMRQDIVALLKGSDSSYVREL 537
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 170 bits (433), Expect = 2e-45
Identities = 108/341 (31%), Positives = 162/341 (47%), Gaps = 41/341 (12%)
Query: 51 DKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYEL 110
D F R A E LGF+ ++ IF+++AS+L LGNV F D E +V + E+
Sbjct: 230 DADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYF-EKRETDAQEVASVVSAREI 288
Query: 111 YEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSR 170
V +LL + LQ AIT + + I T L+ A R+++ K LY+
Sbjct: 289 QAVAELLQISPEGLQKAITFKV-------TETRREKIFTPLTVESAVDARDAIAKVLYAL 341
Query: 171 LFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQL 230
LF +++ R N V + ILDIYGFE S N FEQ IN+ NE L L
Sbjct: 342 LFNWLITRVNALVSPTQDTLS--IAILDIYGFEDL-----SFNSFEQLCINYANENLQYL 394
Query: 231 FTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAF 285
F ++ +EEQEEY RE ++W + F +N + ++I +GIL +LD++ +D F
Sbjct: 395 FNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454
Query: 286 LLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFV 345
L K Y P + S P +P F ++HYAG V Y V F+
Sbjct: 455 LQKC-HYHHGANP-----------LYSKP-------KMPLPEFTIKHYAGKVTYQVHKFL 495
Query: 346 EKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRF 386
+KN + + +DV +S+ ++ HLF + + P R
Sbjct: 496 DKNHDQVRQDVLDLFVSSRTRVVAHLF--SSHAAQRAPKRL 534
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 153 bits (388), Expect = 1e-39
Identities = 99/309 (32%), Positives = 150/309 (48%), Gaps = 41/309 (13%)
Query: 65 LGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTIL 124
+GFT +E+ +++++A++L LG++ F + T+ VSN L LL + L
Sbjct: 249 IGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDEL 308
Query: 125 QGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVK 184
Q A+TS + G T IV + +AT R+++ KALY RLF++IVNR N +K
Sbjct: 309 QEALTSHCVVTR------GET-IVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLK 361
Query: 185 ----VKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
S + +GILDI+GFE + N FEQ IN NE++ F + EQ
Sbjct: 362 HDRNASNSSDQLNVGILDIFGFENF-----KKNSFEQLCINIANEQIQYYFNQHIFAWEQ 416
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
+EY E ++ VE+ +N + D+ G+L+LLDEES +D+ + K S
Sbjct: 417 QEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS 476
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
R + F + HYAG VLYN GF+EKN + L D
Sbjct: 477 KFFWRPKR--------------------VELSFGIHHYAGKVLYNASGFLEKNRDFLPAD 516
Query: 356 VSLAMYTSQ 364
+ L + +SQ
Sbjct: 517 IVLLLRSSQ 525
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 152 bits (385), Expect = 9e-39
Identities = 86/333 (25%), Positives = 160/333 (48%), Gaps = 38/333 (11%)
Query: 47 PHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSN 106
P +DD F ++ +++G + +I DIF +++ VL LGNV T+ +S+
Sbjct: 323 PGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISD 382
Query: 107 DYE--LYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ E C+LL +D L+ +T + + G+ I S E+ + ++SL
Sbjct: 383 ESLEVFNEACELLFLDYESLKKELTVKVTYA-------GNQKIEGPWSKDESEMLKDSLS 435
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
KA+Y +LF +I+ N ++ P G + +G+LDI+GFE + +N EQ IN N
Sbjct: 436 KAVYEKLFLWIIRNLNATIE-PPGGFKVFIGMLDIFGFEVFK-----NNSLEQLFINITN 489
Query: 225 EKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEE----- 279
E L + F D++ E + Y+ E I +E+ +N ++ D++ +LS+L+++
Sbjct: 490 EMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPG 549
Query: 280 SSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLY 339
+DE F + S +++L P+ + F ++H G + Y
Sbjct: 550 GTDEKF---VSSCNTNLKNNP----------KYKPAKVDSN-----KNFVIKHTIGDIQY 591
Query: 340 NVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF 372
GF+ KN ++L ++ + S +PL++ LF
Sbjct: 592 CASGFLFKNKDVLRPELVEVVKASPNPLVRDLF 624
>gnl|CDD|218855 pfam06017, Myosin_TH1, Myosin tail.
Length = 199
Score = 74.6 bits (184), Expect = 2e-15
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 44/135 (32%)
Query: 474 RSWRFVPILFVLSTSSMLILDH------RTLQIKYRVPASEIYRLSLSPYLDDIAVFHIR 527
RS + +L+ ++ ++ +T +K R+P SEI +SLSP DD+ V H
Sbjct: 61 RSGKPSKRDLLLTDKALYLVGREKVKDQKTYVLKRRIPLSEITSVSLSPLQDDLFVIH-- 118
Query: 528 APSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLV 587
V GKGD V ++ E+VT L
Sbjct: 119 ------------------------------------VSGKGDLVLESDFKTELVTVLCKH 142
Query: 588 IQNAVGKPPEVNIAP 602
A G VN +
Sbjct: 143 YLKATGGKLPVNFSD 157
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 65.6 bits (160), Expect = 4e-11
Identities = 88/380 (23%), Positives = 135/380 (35%), Gaps = 73/380 (19%)
Query: 36 SSSPMFSPATSPHLDDKAC--FLRTRKACEALGFTPDEILDIFKVVASVLKLGN------ 87
SSS + P KA F R ++A E LG + E I++V+A++ LG
Sbjct: 215 SSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV 274
Query: 88 ------VVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTI-LQGAITSRSLFIDDPHE 140
+ GC E +L S L+G I + P
Sbjct: 275 AGRKQFARPEWAQKAAELLGC----PLE-----ELSSATFKHTLRGGINQMTTGPQRPGL 325
Query: 141 DCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIY 200
T +++A E + LYS LF +V+ N+++ ++ ++D
Sbjct: 326 SDTETSSGLKMTAVECL---EGMASGLYSELFAAVVSLINRSISSSHHSIASIM-LVDTP 381
Query: 201 GFEAYDGKCGSSNG--FEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNN 258
GF+ G FE+ N+ E+L LF + E Y E +E VEF
Sbjct: 382 GFQN-PASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFDLA 437
Query: 259 S-------AICDIIETNSH-----------GILSLLDEE-----SSDEAFLLKLGSYSSS 295
A+ D G+L LLDEE SSD+ FL +L +
Sbjct: 438 EPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY-- 495
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGT--VLYNVRGFVEKNGELLH 353
G R G+ + G P F L H GT VLY+V G++ +
Sbjct: 496 -----GDRETRETGLSRLRTCEG------PLQFVLFHLLGTNPVLYDVTGWLRRAKPNPA 544
Query: 354 -RDVSLAMYTSQHPLLKHLF 372
+ + S+ + LF
Sbjct: 545 ALNAPQLLQDSKREEINSLF 564
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif. Short calmodulin-binding
motif containing conserved Ile and Gln residues.
Length = 23
Score = 36.9 bits (87), Expect = 7e-04
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 438 RLVDLAVLIQKVWRGYHQRKDF 459
RL A++IQ WRGY RK +
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRY 22
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif. Calmodulin-binding
motif.
Length = 21
Score = 34.6 bits (81), Expect = 0.005
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 443 AVLIQKVWRGYHQRKDF 459
A+ IQ WRGY RK +
Sbjct: 4 AIKIQAAWRGYLARKRY 20
>gnl|CDD|233049 TIGR00608, radc, DNA repair protein radc. The genes in this family
for which the functions are known have an as yet porrly
defined role in determining sensitivity to DNA damaging
agents such as UV irradiation. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 218
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 30 VVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILD 74
+ HNH S P SP +D R RKA E LG E+LD
Sbjct: 165 LAHNHPSGEP------SPSQEDILITERLRKAAELLGI---ELLD 200
>gnl|CDD|143236 cd05759, Ig2_KIRREL3-like, Second immunoglobulin (Ig)-like domain
of Kirrel (kin of irregular chiasm-like) 3 (also known
as Neph2). Ig2_KIRREL3-like: domain similar to the
second immunoglobulin (Ig)-like domain of Kirrel (kin of
irregular chiasm-like) 3 (also known as Neph2). This
protein has five Ig-like domains, one transmembrane
domain, and a cytoplasmic tail. Included in this group
is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and
Drosophila RST (irregular chiasm C-roughest) protein.
These proteins contain multiple Ig domains, have
properties of cell adhesion molecules, and are important
in organ development.
Length = 82
Score = 28.6 bits (64), Expect = 2.1
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 18/73 (24%)
Query: 120 DCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRT 179
D +L GA S+ L D E STL +T R C+A
Sbjct: 22 DGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTG---RTFTCRA------------R 66
Query: 180 NKAVKVKPSGKRK 192
N+A+ P+GK
Sbjct: 67 NEAL---PTGKET 76
>gnl|CDD|235382 PRK05270, PRK05270, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 493
Score = 31.0 bits (71), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 426 VSVFELEEFRRDRLVDLAVLIQKVWRGY 453
+SV L +D L+D A I + WRGY
Sbjct: 307 MSVIRLTSKNKDELIDAADKILEAWRGY 334
>gnl|CDD|218632 pfam05549, Allexi_40kDa, Allexivirus 40kDa protein.
Length = 271
Score = 30.1 bits (68), Expect = 2.6
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 267 TNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSS---AGGDNSL 323
++S + L E+S EA KL +SSLT P V TP+S D SL
Sbjct: 112 SSSKLLKKLTSIETSLEALHAKLDELTSSLTSTLAG-----PSVSPTPASSHPTASDRSL 166
Query: 324 PPF-----CFRLRHYAGTVLYN 340
P + R R Y GTVL+N
Sbjct: 167 PIYQAVHPTARCRTY-GTVLFN 187
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members
of this family are components of the mitochondrial large
ribosomal subunit. Mature mitochondrial ribosomes
consist of a small (37S) and a large (54S) subunit. The
37S subunit contains at least 33 different proteins and
1 molecule of RNA (15S). The 54S subunit contains at
least 45 different proteins and 1 molecule of RNA (21S).
Length = 146
Score = 29.3 bits (66), Expect = 2.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 407 IVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQ 466
IV + S+DE K R + +S +LE RR LI+K W Y Q++ + +Q
Sbjct: 45 IVPQLSVDEAKRRQRKLLKLSPEDLE--RR-------ALIEKCWALYQQQE---REAENQ 92
Query: 467 II 468
+
Sbjct: 93 QL 94
>gnl|CDD|216451 pfam01351, RNase_HII, Ribonuclease HII.
Length = 199
Score = 28.9 bits (65), Expect = 5.6
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 8 LNDLKLLKLQRNLENYSFLKSSVVHNHISSSPM-FSPATSPHLDD--KACFLRTRKACEA 64
+ D K L ++ E +K + + + + ++ A +L++ A L +A +
Sbjct: 35 VKDSKKLSDKKREELAELIKKRIETRKLVAGNIKYAEANEINLNNILHALHLAMIRAVQK 94
Query: 65 LGFTPDEIL-DIFKVVAS 81
LG PDEIL D F+ S
Sbjct: 95 LGVKPDEILVDGFRPPKS 112
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 29.3 bits (65), Expect = 6.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 527 RAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVH 565
+ + S ++ S G G G HHH H M H H
Sbjct: 78 QGANNSGQNEDGSPGGGSGDEGGHHHGHNMHAHHHHHHH 116
>gnl|CDD|234749 PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.
Length = 1112
Score = 29.3 bits (67), Expect = 7.2
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 55 FLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEV- 113
LR ALG++ +EILD+F + G + +P + G D E EV
Sbjct: 202 LLR------ALGYSDEEILDLFY---EKEEFGKEIEVPVEYLLGKVLAEDIVDEETGEVL 252
Query: 114 CDLLSMDCTILQGAITSRSLFID 136
+ L G +L D
Sbjct: 253 AEANDEITEELDGPYIRNTLEKD 275
>gnl|CDD|224655 COG1741, COG1741, Pirin-related protein [General function
prediction only].
Length = 276
Score = 28.8 bits (65), Expect = 7.8
Identities = 21/100 (21%), Positives = 26/100 (26%), Gaps = 16/100 (16%)
Query: 295 SLTPERGRGGVRTPGVLSTPSSAGGDNSLP-----PFCFRLRHYAGTV-----------L 338
L V + G S P LR AG L
Sbjct: 138 HLAFPDEIPRVELGLTARVIAGRDGGLSSPVRQDSLHYVDLRLEAGARLQLPPAGRRAYL 197
Query: 339 YNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRV 378
Y + G +E NG+ LA+ L P RV
Sbjct: 198 YVIEGTLEVNGQHETDGDGLAILDGDEITLVADSPAGARV 237
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 28.9 bits (66), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 58 TRKACEALGFTPDEILDIFKVVASVLKLGNVVFI 91
KA EA+ DE L +VV +VLK+G + I
Sbjct: 410 AVKAVEAV----DECLG--RVVDAVLKVGGTLLI 437
>gnl|CDD|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated.
Length = 870
Score = 29.2 bits (66), Expect = 8.2
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 174 YIVNRTNKAVKVKPSGKR---KVLGILDIYGFEAYDGKCGSSNGFEQFIIN 221
Y V+ NK V + G K+L I D+Y + + +I+N
Sbjct: 246 YEVDEKNKNVILTEQGILFIEKILKIEDLYSAN---------DPWIPYILN 287
>gnl|CDD|215579 PLN03106, TCP2, Protein TCP2; Provisional.
Length = 447
Score = 28.9 bits (64), Expect = 8.4
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 525 HIRAPSPSSCSDASSS--FLGGGGGGTHHHHHQM---------GCLFHSEVHGKG 568
H++ S S D S+ F G HHH+HQ GC HS+ GKG
Sbjct: 392 HLQRFSTSEPIDGSNVPFFFGAAPAENHHHNHQFPPGQLYYGDGCR-HSDQKGKG 445
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,801,872
Number of extensions: 3045491
Number of successful extensions: 2654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2586
Number of HSP's successfully gapped: 43
Length of query: 602
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 500
Effective length of database: 6,413,494
Effective search space: 3206747000
Effective search space used: 3206747000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.5 bits)