RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18109
(602 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 347 bits (892), Expect = e-111
Identities = 129/385 (33%), Positives = 183/385 (47%), Gaps = 48/385 (12%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
+ + L L L N Y +LK S +DD F K
Sbjct: 204 QMLKGLSQSKLDELGLTPNAPAYEYLKKSGCF------------DVSTIDDSGEFKIIVK 251
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPS-NNIDGTEGCTVSNDYELYEVCDLLSM 119
A E LG + I++++A++L +GN+ F + GT VS+ L L
Sbjct: 252 AMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKT 311
Query: 120 DCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRT 179
D L A+ RS I S I + +A +R++L KALY RLF ++V++
Sbjct: 312 DQQSLSIALCYRS--ISTGVGKRCSV-ISVPMDCNQAAYSRDALAKALYERLFNWLVSKI 368
Query: 180 NKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREE 239
N + K V+GILDIYGFE + +N FEQ INFCNEKL QLF ++ L+ E
Sbjct: 369 NTIINCTTE-KGPVIGILDIYGFEVFQ-----NNSFEQLNINFCNEKLQQLFIELTLKSE 422
Query: 240 QEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKL----G 290
QEEY RE IEW +E+FNN IC++IE G++SLLDE +D+ FL +
Sbjct: 423 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFE 482
Query: 291 SYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGE 350
+ + D S+ CFRL+HYAG V Y+VRGF++KN +
Sbjct: 483 KNPHLQSYVVSK-----------------DRSIGDTCFRLKHYAGDVTYDVRGFLDKNKD 525
Query: 351 LLHRDVSLAMYTSQHPLLKHLFPEE 375
L D+ +M +S PL++ LFP
Sbjct: 526 TLFGDLISSMQSSSDPLVQGLFPPT 550
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 343 bits (882), Expect = e-109
Identities = 111/419 (26%), Positives = 181/419 (43%), Gaps = 48/419 (11%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPH------------ 48
+ + + L L + +N+ +L + +
Sbjct: 246 RLCAGASEDIRERLHLS-SPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKD 304
Query: 49 --LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSN 106
LDD F+R A + +G +E LD+F+VVA VL LGN+ F + + G +
Sbjct: 305 PLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKS 364
Query: 107 DYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKA 166
L +LL +D L+ ++T+R + T+I L +A R++L K
Sbjct: 365 TQALEYCAELLGLDQDDLRVSLTTRV--MLTTAGGAKGTVIKVPLKVEQANNARDALAKT 422
Query: 167 LYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEK 226
+YS LF ++VNR N+ + S +G+LDI GFE ++ N FEQF IN+CNEK
Sbjct: 423 VYSHLFDHVVNRVNQCFPFETS--SYFIGVLDIAGFEYFE-----HNSFEQFCINYCNEK 475
Query: 227 LHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----S 281
L Q F + +L+EEQE Y++E + V + +N D+IE GIL +LDEE+ S
Sbjct: 476 LQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPS 535
Query: 282 DEAFLLKL----GSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTV 337
D+ F + + P + + + F +RH+AG V
Sbjct: 536 DQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDE-------------GFIIRHFAGAV 582
Query: 338 LYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTL 396
Y FVEKN + LH + + S+ ++ LF + T+ + L ++
Sbjct: 583 CYETTQFVEKNNDALHMSLESLICESRDKFIRELFESS--TNNNKDTKQKAGKLSFISV 639
Score = 34.5 bits (80), Expect = 0.097
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 428 VFELEEFRRDRLVDLAVLIQKVWRGY 453
E ++ + LA L+++V +
Sbjct: 759 FAEFDQIMKSDPDHLAELVKRV-NHW 783
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 323 bits (830), Expect = e-101
Identities = 106/405 (26%), Positives = 166/405 (40%), Gaps = 60/405 (14%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
+S L +L + N +Y+F+ T +DD + T
Sbjct: 288 QILSNKKPELLDMLLITNNPYDYAFISQGET-------------TVASIDDAEELMATDN 334
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A + LGFT +E ++K+ +++ GN+ F E E + L+ ++
Sbjct: 335 AFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQR---EEQAEPDGTEEADKSAYLMGLN 391
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
L + + + G+ + + + +L KA+Y R+F ++V R N
Sbjct: 392 SADLLKGLCHPRVKV-------GNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRIN 444
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
++ K + +G+LDI GFE +D N FEQ INF NEKL Q F M EQ
Sbjct: 445 ATLETKQPRQY-FIGVLDIAGFEIFD-----FNSFEQLCINFTNEKLQQFFNHHMFVLEQ 498
Query: 241 EEYRRENIEWCYVEFFNNSAIC-DIIETNSHGILSLLDEES-----SDEAFLLKL----- 289
EEY++E IEW +++F + C D+IE GI+S+L+EE +D F KL
Sbjct: 499 EEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIMSILEEECMFPKATDMTFKAKLFDNHL 557
Query: 290 GSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNG 349
G ++ P +G F L HYAG V YN+ G+++KN
Sbjct: 558 GKSANFQKPRNIKGKPEA-------------------HFSLIHYAGIVDYNIIGWLQKNK 598
Query: 350 ELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSS 394
+ L+ V S LL LF + GSS
Sbjct: 599 DPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSS 643
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 326 bits (838), Expect = e-100
Identities = 101/402 (25%), Positives = 168/402 (41%), Gaps = 55/402 (13%)
Query: 4 SACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACE 63
L L+ +Y FL + S ++ F T ++
Sbjct: 264 GGAGEQLKADLLLE-PCSHYRFLTNG---PSSSP-----------GQERELFQETLESLR 308
Query: 64 ALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTI 123
LGF+ +EI+ + ++V++VL+ GN+ N T+ T+ ++ ++C LL + T
Sbjct: 309 VLGFSHEEIISMLRMVSAVLQFGNIALKRERN---TDQATMPDNTAAQKLCRLLGLGVTD 365
Query: 124 LQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAV 183
A+ + + + G + + +A +L KA Y RLF ++V R N+A+
Sbjct: 366 FSRALLTPRIKV-------GRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRAL 418
Query: 184 KVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEY 243
P LGILDI GFE + N FEQ IN+ NEKL QLF M EQEEY
Sbjct: 419 DRSPRQGASFLGILDIAGFEIFQ-----LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEY 473
Query: 244 RRENIEWCYVEF-FNNSAICDIIE--TNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
+RE I W +++F + D+IE N G+L+LLDEE +D++F+ K+
Sbjct: 474 QREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKV--AQEQ 531
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ P F + HYAG V Y ++ KN + L+ +
Sbjct: 532 GGHPK----------FQRPRHLRDQA-----DFSVLHYAGKVDYKANEWLMKNMDPLNDN 576
Query: 356 VSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLK 397
V+ ++ S L ++ + + + +
Sbjct: 577 VAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPR 618
Score = 49.3 bits (118), Expect = 4e-06
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 23/101 (22%)
Query: 398 YSILKVCPNIVDRPSMDEIKLCCR--GSVDVS-----------------VFELEEFRRDR 438
Y IL PN + + MD + C + ++++ + +LEE R
Sbjct: 700 YEIL--TPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASE 757
Query: 439 LVDLAVLI--QKVWRGYHQRKDFLKRKRSQIIIASAWRSWR 477
L ++ + + ++ L+ + I S
Sbjct: 758 QTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMN 798
Score = 32.7 bits (75), Expect = 0.36
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 430 ELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWR 474
E R +AVL+QK R + +++ K +
Sbjct: 864 EALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 908
Score = 31.2 bits (71), Expect = 1.3
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 430 ELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKR 464
E ++ + ++ ++ + +KR+
Sbjct: 802 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREP 836
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 318 bits (817), Expect = 1e-98
Identities = 103/381 (27%), Positives = 167/381 (43%), Gaps = 48/381 (12%)
Query: 11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
++ + + YSF+ + T ++DD F +A + LGFT +
Sbjct: 297 NDVMLVTPDSGLYSFINQGCL-------------TVDNIDDVEEFKLCDEAFDILGFTKE 343
Query: 71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
E +FK AS+L +G + F E E +V L ++ L A+
Sbjct: 344 EKQSMFKCTASILHMGEMKFKQR---PREEQAESDGTAEAEKVAFLCGINAGDLLKALLK 400
Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
+ + G+ ++ + + + +L K+LY R+F ++V R NK + K
Sbjct: 401 PKVKV-------GTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRN 453
Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
+G+LDI GFE +D N FEQ IN+ NE+L Q F M EQEEY++E I W
Sbjct: 454 Y-YIGVLDIAGFEIFD-----FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAW 507
Query: 251 CYVEFFNNSAIC-DIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSSLTPERGRGG 304
+++F + +C D+IE GILS+L+EE D++F KL
Sbjct: 508 EFIDFGMDLQMCIDLIE-KPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRM----- 561
Query: 305 VRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQ 364
PG + P+ F L HYAG V Y++ G++EKN + ++ +V + S+
Sbjct: 562 FTKPGKPTRPNQGPAH-------FELHHYAGNVPYSITGWLEKNKDPINENVVALLGASK 614
Query: 365 HPLLKHLFPEETRVPEAQPTR 385
PL+ LF +
Sbjct: 615 EPLVAELFKAPEEPAGGGKKK 635
Score = 62.3 bits (152), Expect = 3e-10
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 398 YSILKVCPNIVDRPSMDEIKLCCR--GSVDVS-----------------VFELEEFRRDR 438
YSIL PN + + +D + + + + + LEE R +R
Sbjct: 720 YSIL--APNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDER 777
Query: 439 LVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWR 477
L + + Q RGY RK + K + +I ++ R+ R
Sbjct: 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIR 816
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 321 bits (824), Expect = 6e-98
Identities = 108/398 (27%), Positives = 173/398 (43%), Gaps = 54/398 (13%)
Query: 4 SACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACE 63
++ L + K L+L + + K +DD + TR+AC
Sbjct: 267 ASAALPEFKTLRLGNA-NYFHYTKQGGSP------------VIDGIDDAKEMVNTRQACT 313
Query: 64 ALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTI 123
LG + + IF+++A +L LGNV F D L CDL+ +D
Sbjct: 314 LLGISDSYQMGIFRILAGILHLGNVEFASR---DSDSCAIPPKHDPLTIFCDLMGVDYEE 370
Query: 124 LQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAV 183
+ + R L + + +S A R++L K +Y+ LF +IV+ NKA+
Sbjct: 371 MAHWLCHRKLAT-------ATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKAL 423
Query: 184 KVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEY 243
+ +G+LDIYGFE ++ N FEQF IN+ NEKL Q F + + EQEEY
Sbjct: 424 HSTVK-QHSFIGVLDIYGFETFE-----INSFEQFCINYANEKLQQQFNMHVFKLEQEEY 477
Query: 244 RRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSSLTP 298
+E I W ++F++N ++IE G+L LLDEE SD+ + KL Y++ L
Sbjct: 478 MKEQIPWTLIDFYDNQPCINLIE-AKMGVLDLLDEECKMPKGSDDTWAQKL--YNTHLN- 533
Query: 299 ERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSL 358
+ P + F ++H+A V Y GF+EKN + ++ +
Sbjct: 534 --------KCALFEKPRLSNKA-------FIIKHFADKVEYQCEGFLEKNKDTVYEEQIK 578
Query: 359 AMYTSQH-PLLKHLFPEETRVPEAQPTRFRISILGSST 395
+ +S+ LL LF +E + + S T
Sbjct: 579 VLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRT 616
Score = 64.4 bits (157), Expect = 7e-11
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 428 VFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSW 476
V LE+ R D+L + IQK RG+ RK +++ +R+ I I R
Sbjct: 756 VAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGH 804
Score = 39.3 bits (92), Expect = 0.004
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 410 RPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIII 469
R + ++ RG + +++ +++IQK RG+ R + + ++ + +
Sbjct: 839 RDATIALQALLRGYL-----VRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 470 ASAWRSWR 477
+R
Sbjct: 894 QCCYRRMM 901
Score = 38.9 bits (91), Expect = 0.006
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 433 EFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSW 476
R A++IQK R Y RK + + + I + + R +
Sbjct: 809 YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGY 852
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 319 bits (819), Expect = 1e-97
Identities = 107/395 (27%), Positives = 183/395 (46%), Gaps = 57/395 (14%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
++ + K L L E++++L S + + D+ F TR+
Sbjct: 283 QLLAGATAEEKKALHLA-GPESFNYLNQS---GCV---------DIKGVSDEDEFKITRQ 329
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A + +GF+ +E + IFK++A +L LGN+ F EG + + L + ++
Sbjct: 330 AMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG----EGAVLKDKTALNAASTVFGVN 385
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
++L+ A+ + G L+ L+ +++ +R++L KALY RLF ++V + N
Sbjct: 386 PSVLEKALMEPRILA-------GRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
+ + K +G+LDI GFE + N FEQ IN+ NEKL Q F M + EQ
Sbjct: 439 NVLCSER--KAYFIGVLDISGFEIFK-----VNSFEQLCINYTNEKLQQFFNHHMFKVEQ 491
Query: 241 EEYRRENIEWCYVEF-FNNSAICDIIET-NSHGILSLLDEES-----SDEAFLLKLGSYS 293
EEY +E I W +++F ++ A D+I+ GIL+LLDE+S +D + KL S+
Sbjct: 492 EEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHF 551
Query: 294 SSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLH 353
S P + + F + HYAG V+Y ++ ++EKN + L
Sbjct: 552 SKKNA-----------KYEEPRFSKTE-------FGVTHYAGQVMYEIQDWLEKNKDPLQ 593
Query: 354 RDVSLAMYTSQHPLLKHLFPEETRVPEA-QPTRFR 387
+D+ L S ++ LF + A + F
Sbjct: 594 QDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFI 628
Score = 48.9 bits (117), Expect = 4e-06
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 9/59 (15%)
Query: 428 VFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRK---------RSQIIIASAWRSWR 477
+ +EE R RL + R + ++ S + S + +
Sbjct: 751 LARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHK 809
Score = 30.4 bits (69), Expect = 2.3
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 430 ELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQI 467
E R +AVL+QK R + +++ K +
Sbjct: 872 EALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 314 bits (806), Expect = 2e-97
Identities = 107/405 (26%), Positives = 172/405 (42%), Gaps = 54/405 (13%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
++ L + K L+L N + + K +DD + TR+
Sbjct: 264 QLCASAALPEFKTLRLG-NANYFHYTKQGGSP------------VIDGIDDAKEMVNTRQ 310
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
AC LG + + IF+++A +L LGNV F D L CDL+ +D
Sbjct: 311 ACTLLGISDSYQMGIFRILAGILHLGNVEFASR---DSDSCAIPPKHDPLTIFCDLMGVD 367
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
+ + R L + + +S A R++L K +Y+ LF +IV+ N
Sbjct: 368 YEEMAHWLCHRKLAT-------ATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN 420
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
KA+ + +G+LDIYGFE ++ N FEQF IN+ NEKL Q F + + EQ
Sbjct: 421 KALHSTVK-QHSFIGVLDIYGFETFE-----INSFEQFCINYANEKLQQQFNMHVFKLEQ 474
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
EEY +E I W ++F++N ++IE G+L LLDEE SD+ + KL + +
Sbjct: 475 EEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLN 533
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ P + F ++H+A V Y GF+EKN + ++ +
Sbjct: 534 KCA-----------LFEKPRLSNKA-------FIIKHFADKVEYQCEGFLEKNKDTVYEE 575
Query: 356 VSLAMYTSQH-PLLKHLFPEETRVPEAQPTRFRISILGSSTLKYS 399
+ +S+ LL LF +E + + S T
Sbjct: 576 QIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKP 620
Score = 53.8 bits (130), Expect = 1e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 430 ELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKR 464
LE+ R D+L + IQK RG+ RK +++ +R
Sbjct: 758 YLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 792
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 321 bits (824), Expect = 2e-97
Identities = 111/390 (28%), Positives = 172/390 (44%), Gaps = 54/390 (13%)
Query: 4 SACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACE 63
+ L L+ NY+FL + V P D F T +A
Sbjct: 294 AGASEQMRNDLLLE-GFNNYTFLSNGHV-------------PIPAQQDDEMFQETLEAMT 339
Query: 64 ALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTI 123
+GFT +E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T
Sbjct: 340 IMGFTEEEQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTD 396
Query: 124 LQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAV 183
+I + + + G ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 397 FTRSILTPRIKV-------GRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKAL 449
Query: 184 KVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEY 243
LGILDI GFE ++ N FEQ IN+ NEKL QLF M EQEEY
Sbjct: 450 DKTKRQGASFLGILDIAGFEIFE-----INSFEQLCINYTNEKLQQLFNHTMFILEQEEY 504
Query: 244 RRENIEWCYVEF-FNNSAICDIIE--TNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
+RE IEW +++F + ++IE TN G+L+LLDEE +D +F+ KL
Sbjct: 505 QREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL--IQEQ 562
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ F + HYAG V YN ++ KN + L+ +
Sbjct: 563 GNHAK----------FQKSKQLKDKT-----EFCILHYAGKVTYNASAWLTKNMDPLNDN 607
Query: 356 VSLAMYTSQHPLLKHLFPEETRVPEAQPTR 385
V+ + S + L+ + R+
Sbjct: 608 VTSLLNQSSDKFVADLWKDVDRIVGLDQMA 637
Score = 59.8 bits (145), Expect = 2e-09
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 398 YSILKVCPNIVDRPSMDEIKLCCR--GSVDVS-----------------VFELEEFRRDR 438
Y IL N + + MD + C ++++ + LEE R +
Sbjct: 733 YEIL--AANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLK 790
Query: 439 LVDLAVLIQKVWRGYHQRKDFLKRKR---SQIIIASAWRSW 476
+ D+ + Q RGY RK F KR++ S I RS+
Sbjct: 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSF 831
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 311 bits (799), Expect = 1e-96
Identities = 108/395 (27%), Positives = 182/395 (46%), Gaps = 57/395 (14%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
++ + K L L E++++L S + D F TR+
Sbjct: 283 QLLAGATAEEKKALHLA-GPESFNYLNQS------------GCVDIKGVSDSEEFKITRQ 329
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A + +GF+ +E + IFK++A +L LGN+ F EG + + L + ++
Sbjct: 330 AMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG----EGAVLKDKTALNAASTVFGVN 385
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
++L+ A+ + G L+ L+ +++ +R++L KALY RLF ++V + N
Sbjct: 386 PSVLEKALMEPRILA-------GRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKIN 438
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
+ + K +G+LDIYGFE + N FEQ IN+ NEKL Q F M + EQ
Sbjct: 439 NVLCQER--KAYFIGVLDIYGFEIFK-----VNSFEQLCINYTNEKLQQFFNHHMFKLEQ 491
Query: 241 EEYRRENIEWCYVEF-FNNSAICDIIET-NSHGILSLLDEES-----SDEAFLLKLGSYS 293
EEY +E I W +++F ++ A D+I+ GIL+LLDE+S +D + KL S+
Sbjct: 492 EEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHF 551
Query: 294 SSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLH 353
S P + + F + HYAG V+Y ++ ++EKN + L
Sbjct: 552 SKKNA-----------KYEEPRFSKTE-------FGVTHYAGQVMYEIQDWLEKNKDPLQ 593
Query: 354 RDVSLAMYTSQHPLLKHLFPEETRVPEAQ-PTRFR 387
+D+ L S ++ LF + A+ F
Sbjct: 594 QDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFI 628
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.8 bits (178), Expect = 2e-13
Identities = 116/648 (17%), Positives = 194/648 (29%), Gaps = 236/648 (36%)
Query: 19 NLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTR-KACEALGFTPDEILDIFK 77
+LE + L + ++ F A+ L ++ F + + E DE +
Sbjct: 15 SLE-HVLL--------VPTA-SFFIAS--QLQEQ--FNKILPEPTEGFA-ADDEPTTPAE 59
Query: 78 VVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQG----AITSRSL 133
+V L ++ S+ ++ ++ V ++ +C L + L+G A+ ++ L
Sbjct: 60 LVGKFLG-----YV-SSLVEPSK---VGQFDQVLNLC-LTEFENCYLEGNDIHALAAKLL 109
Query: 134 FIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKV 193
+D LI ++A + + K S LF +AV G ++
Sbjct: 110 QENDTTLVKTKELIKNYITA--RIMAKRPFDKKSNSALF--------RAVG---EGNAQL 156
Query: 194 LGILDIYGFEAYDGKCGSSNG-FEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCY 252
+ I +G G+ G+++ FE E LR+ + Y
Sbjct: 157 VAI---FG-----GQ-GNTDDYFE--------E----------LRDLYQTYH-------- 181
Query: 253 VEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLS 312
+ D+I+ S LS L + D + ++ L L
Sbjct: 182 ------VLVGDLIKF-SAETLSELIRTTLDAEKV-----FTQGLNILE---------WLE 220
Query: 313 TPSSAGGDN-------SLPPFC-FRLRHYAGTVLYNVRGFVEKNGELLHR---------D 355
PS+ + S P +L HY V + GF GEL
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYV--VTAKLLGF--TPGELRSYLKGATGHSQG 276
Query: 356 VSLA-----------MYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVC 404
+ A + S + LF R EA P + L S L+ S+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN----TSLPPSILEDSL---- 328
Query: 405 PNIVDRPS-MDEIKLCCRGSVDVSVFE-LEEFR----------------RDRLV------ 440
N PS M L V + + + LV
Sbjct: 329 ENNEGVPSPM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 441 DLAVLIQ-----KVWRGYHQ-RKDFLKRKRSQIIIASAWRSWRFVPIL--FVLSTSSMLI 492
L L K G Q R F +RK + S RF+P+ F
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERK---LKF-----SNRFLPVASPF--------- 427
Query: 493 LDHRTLQIKYRVPASEIYRLSL--------SPYLDDIAVFH------IRAPS-------- 530
H VPAS++ L + + I V+ +R S
Sbjct: 428 --HS----HLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERIV 480
Query: 531 ----------PSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKG 568
++ ++ L G GG +G L H G G
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGA----SGLGVLTHRNKDGTG 524
Score = 42.3 bits (99), Expect = 5e-04
Identities = 64/427 (14%), Positives = 116/427 (27%), Gaps = 171/427 (40%)
Query: 17 QRNLENY----------------SFLKSS------VVHNHISSSPMFS-----------P 43
Q N ++Y +K S ++ + + +F+ P
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 44 ATSPHLD---------------DKACFLRTRKACEALGFTPDEILDIFK--------VVA 80
+ +P D A ++ T + LGFTP E+ K +V
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 81 SVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSL--FIDDP 138
+V ++ +E + V ++ G R + P
Sbjct: 280 AVA------------------IAETDSWESFFVSVRKAITVLFFIGV---RCYEAY---P 315
Query: 139 HEDCGSTLIVTELSAGEAT------VTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRK 192
+ +++ L E ++ + + + Y+ N+TN + P+GK+
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-----VQDYV-NKTNSHL---PAGKQV 366
Query: 193 VLGI-------------LDIYGFEAYDGKCGSSNGFEQFIINFCNEKL------------ 227
+ + +YG K + +G +Q I F KL
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 228 -H-QLFTDVMLREEQEEYRRENIEW------CYVEFFNN------------SAICDII-- 265
H L ++ + N+ + V + I D I
Sbjct: 427 FHSHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 266 ------ETNSHGILSLLDEESSDEAF----LLKLGSYSSSLTPERGRGGVRT--PGVLST 313
T +LD F LG + G GVR G L
Sbjct: 486 LPVKWETTTQFKATHILD-------FGPGGASGLGVLTHRNK--DGT-GVRVIVAGTLDI 535
Query: 314 -PSSAGG 319
P G
Sbjct: 536 NPDDDYG 542
Score = 34.3 bits (78), Expect = 0.14
Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 40/150 (26%)
Query: 485 LSTSSM--LILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPS---SCSDASS 539
+ S L L H +L+ VP + + S L + F+ P P+ + D +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ---LQEQ--FNKILPEPTEGFAADDEPT 55
Query: 540 S-------FLG-------GGGGGTHHH-------HHQMGCLFHSEVHGKGDFVFQ-TGHV 577
+ FLG G + L +++H +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALAAKLLQEN 112
Query: 578 IEIVTKLFLVIQN-----AVGKPPEVNIAP 602
+ K +I+N + K P +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSN 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 1e-12
Identities = 81/623 (13%), Positives = 174/623 (27%), Gaps = 180/623 (28%)
Query: 67 FTPD----EILDIFKVVASVLKLGNVVFIPSNNIDGTE---GCTVSNDYELYE--VCDLL 117
F + ++ D+ K + S ++ +++ + + GT +S E+ + V ++L
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 118 SMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFT-YIV 176
++ L I + ++T + + R+ L +++F Y V
Sbjct: 88 RINYKFLMSPI----------KTEQRQPSMMTRMYIEQ----RDRLYND--NQVFAKYNV 131
Query: 177 NR-------TNKAVKVKP-----------SGKRKVL--------GILDIYGFEAY---DG 207
+R ++++P SGK + + F+ +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 208 KCGSSNG--------FEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCY------- 252
C S Q N+ + H + + Q E RR Y
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 253 --------VEFFN----------NSAICDIIETNSHGILSL------LDEESSDEAFLLK 288
FN + D + + +SL L + L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 289 LGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKN 348
L L P P LS + S+ ++ + +E +
Sbjct: 311 LDCRPQDL-PREVLTT--NPRRLSIIAE-----SIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 349 GELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIV 408
+L M+ L +FP +P +S++ +++
Sbjct: 363 LNVLEPAEYRKMFDR----LS-VFPPSAHIPTI-----LLSLIWF------------DVI 400
Query: 409 DRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQII 468
M + + S+ +E+ ++ + + + + + + I+
Sbjct: 401 KSDVMVVVNKLHKYSL------VEKQPKESTISIPSIYLE----LKVKLENEYALHRSIV 450
Query: 469 ----IASAWRSWRFVPI------------------------LFVLSTSSMLILDHRTLQI 500
I + S +P LF M+ LD R L+
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQ 505
Query: 501 KYRVPASEIYRLSLSPYLDDIAVF-----HIR--APSPSSCSDASSSFLGGGGGGTHHHH 553
K R + L+ + +I P +A FL +
Sbjct: 506 KIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLIC 561
Query: 554 HQMGCLFHSEVHGKGDFVFQTGH 576
+ L + + + +F+ H
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAH 584
Score = 43.3 bits (101), Expect = 3e-04
Identities = 53/375 (14%), Positives = 108/375 (28%), Gaps = 133/375 (35%)
Query: 7 PLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLD--DKAC--FLRTRKAC 62
++ ++ +L+R L++ + +V ++ ++ + + +C L TR
Sbjct: 226 RIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAK--------AWNAFNLSCKILLTTRFKQ 276
Query: 63 -----------------EALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVS 105
++ TPDE+ + L +P E T +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDC-RPQDLPR------EVLTTN 326
Query: 106 -----------------NDYELYEVCDLLSM-------------------DCTILQGA-- 127
D + CD L+ ++ +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 128 ITSRSLFI---DDPHEDCGSTLIVTELSAGEATVTRNSLCK--------ALYSRLFTYIV 176
I + L + D D ++V +L + SL + ++ S V
Sbjct: 387 IPTILLSLIWFDVIKSDVM--VVVNKLH-------KYSLVEKQPKESTISIPSIYLELKV 437
Query: 177 NRTNKAVKVKPSGKRKVLGILDIYGF-EAYDGKCGSSNGFEQFIINFC--------NEKL 227
N+ R I+D Y + +D +Q+ + + +
Sbjct: 438 KLENEYAL-----HRS---IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 228 HQLFTDVML--REEQEEYRRENIEWCYVEFFNN---------SAICDIIETNSHGILSLL 276
LF V L R +++ R ++ W N ICD + ++L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 277 DEESSDEAFLLKLGS 291
D FL K+
Sbjct: 550 D-------FLPKIEE 557
Score = 31.7 bits (71), Expect = 0.82
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 12/62 (19%)
Query: 550 HHHHHQMGCLFHSEVHGKGD--------FV--FQTGHVIEIVTKLFL--VIQNAVGKPPE 597
HHHHH M + D FV F V ++ + I + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 598 VN 599
V+
Sbjct: 61 VS 62
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 59.1 bits (144), Expect = 1e-11
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 437 DRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWR 477
D+L + IQK RG+ RK +L +R+ I + R ++
Sbjct: 2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQ 42
Score = 37.5 bits (88), Expect = 5e-04
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 443 AVLIQKVWRGYHQRKDFLKRKRSQ 466
A+ +Q+ RGY R +R++
Sbjct: 31 AITVQRYVRGYQARCYAKFLRRTK 54
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 37.1 bits (86), Expect = 7e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 435 RRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQ---IIIASAWRSWRFV 479
R +RL + + Q RGY RK + K + + +I R W +
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 48
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 35.1 bits (81), Expect = 0.004
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 438 RLVDLAVLIQKVWRGYHQRKDFLKRKRSQ---IIIASAWRSWRFV 479
R+ ++ ++Q RG+ +RK F + + II R++
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEF 46
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation
domain, membrane protein; NMR {Rattus norvegicus} SCOP:
j.12.1.1 PDB: 1zto_A*
Length = 78
Score = 31.6 bits (70), Expect = 0.12
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 525 HIRAPSPSSCSDASSSFLGGGG-GGTHHHHHQ 555
H RA + ++ + A+++ G GG GG HHHHQ
Sbjct: 38 HSRAAAAAAVAAATAAVEGTGGSGGGPHHHHQ 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.15
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 20/45 (44%)
Query: 9 NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKA 53
LK KLQ + LK +++ ++P L KA
Sbjct: 20 QALK--KLQ------ASLK------------LYADDSAPALAIKA 44
Score = 31.1 bits (69), Expect = 0.51
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 8/25 (32%)
Query: 508 EIYRL--SLSPYLDDIAVFHIRAPS 530
+ +L SL Y DD AP+
Sbjct: 21 ALKKLQASLKLYADD------SAPA 39
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET:
HEM; 1.35A {Campylobacter jejuni}
Length = 140
Score = 31.0 bits (70), Expect = 0.51
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 345 VEKNGELLHRDVSLAMYT---SQHPLLKHLFPEETRVPEAQPTRFRISIL 391
++KNGE D++ Y + +P +K +F E ++ QP ++IL
Sbjct: 16 LQKNGE----DLTNEFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAIL 61
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics,
PSI, S genomics of pathogenic protozoa consortium; HET:
12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB:
2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Length = 161
Score = 30.7 bits (69), Expect = 0.83
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 66 GFTPDEILDIFKVVASVL-KLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTIL 124
F PD + V +L K + IP++N + ++ + CD + D +
Sbjct: 19 VFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPF 78
Query: 125 QGA 127
+G
Sbjct: 79 RGH 81
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 30.8 bits (69), Expect = 1.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 496 RTLQIKYRVPASEIYRLSLSPYLDDIAV--FHIRAPSPSS-CSDASSSFLGGGGGG 548
R L+ KY +E L+ IA F I+ P S+ D S GGGGG
Sbjct: 264 RQLKSKYEANLNE-LNGIWDTALELIAEMYFGIQRPRQSNPLLDMMGSLFGGGGGA 318
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
engineering, molecular chaperone, redox-active center,
PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Length = 291
Score = 30.3 bits (69), Expect = 1.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 367 LLKHLFPEETRVPEAQPTRFR 387
+L+ + E+ + E P RF
Sbjct: 214 ILEEVLGEKPEILETMPVRFH 234
>1vq0_A 33 kDa chaperonin; TM1394, joint center for structural genomics,
protein structure initiative, PSI, chaperone; HET: UNL;
2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1
Length = 302
Score = 30.3 bits (69), Expect = 1.7
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 367 LLKHLFPEETRVPEAQPTRFR 387
+L+ +F E+ E +++
Sbjct: 222 VLERIFGEKVGFVETAEIKYK 242
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137,
structural genomics, PSI-2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
3cwi_A
Length = 78
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 540 SFLGGGGGGTHHHHH 554
F+GGG HHHHH
Sbjct: 64 YFMGGGKLEHHHHHH 78
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM;
1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB:
1vhb_A* 3vhb_A* 4vhb_A*
Length = 146
Score = 29.0 bits (65), Expect = 2.3
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 345 VEKNGELLHRDVSLAMYT---SQHPLLKHLFPEETRVPEAQPTRFRISIL 391
++++G ++ Y ++HP ++ LF + QP +++L
Sbjct: 17 LKEHGV----TITTTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVL 62
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase;
HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 29.5 bits (67), Expect = 3.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 64 ALGFTPDEILDIF 76
AL +T ++ILD+F
Sbjct: 65 ALNYTTEQILDLF 77
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Length = 105
Score = 27.8 bits (62), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 58 TRKACEALGFTPDEILDIFKVVASV 82
+ A + LG T +EI D+ +VV
Sbjct: 65 MKSAMKELGITKEEIADVLRVVLLT 89
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics,
PSI-2, protein STRU initiative; NMR {Archaeoglobus
fulgidus}
Length = 161
Score = 28.6 bits (63), Expect = 4.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 547 GGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLV 587
G +HHHHH HS G+ + FQ GH+ +IV + +
Sbjct: 2 GSSHHHHH------HSS--GRENLYFQ-GHMSKIVGVTYPI 33
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Length = 121
Score = 27.7 bits (61), Expect = 5.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 547 GGTHHHHHQMGCLFHSEVHGKGD 569
G +HHHHH L H KGD
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMKGD 24
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 28.0 bits (63), Expect = 7.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 533 SCSDASSSFLGGGGGGTHHHHHQ 555
++ L GG G HHHHH
Sbjct: 260 EAGPNAAYALKGGSGSGHHHHHH 282
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural
genomics consortium, SGC, chromatin regulator,
developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A
3ldb_A*
Length = 336
Score = 28.1 bits (62), Expect = 8.3
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 535 SDASSSFLGGGGGGTHHHHHQMGC-LFHSEVHGKGDFVF 572
+G GT H +G +++ V G +
Sbjct: 171 PPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCL 209
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
actin-binding, calcium, cytoplasm, cytoskeleton,
structural protein; 2.00A {Homo sapiens}
Length = 398
Score = 28.3 bits (62), Expect = 9.4
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 550 HHHHHQMGCLFHSEVHGKGDFVFQTGHVIEI---VTKLFL 586
HHHHH + LF K V V ++ T + +
Sbjct: 7 HHHHHHLEVLFQGPGRPKTHTVGSVAKVEQVKFDATSMHV 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,406,528
Number of extensions: 586143
Number of successful extensions: 2945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 61
Length of query: 602
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 503
Effective length of database: 3,937,614
Effective search space: 1980619842
Effective search space used: 1980619842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)