RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18109
(602 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 208 bits (531), Expect = 1e-59
Identities = 129/380 (33%), Positives = 185/380 (48%), Gaps = 40/380 (10%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
+ + L L L N Y +LK S +DD F K
Sbjct: 196 QMLKGLSQSKLDELGLTPNAPAYEYLKKS------------GCFDVSTIDDSGEFKIIVK 243
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPS-NNIDGTEGCTVSNDYELYEVCDLLSM 119
A E LG + I++++A++L +GN+ F + GT VS+ L L
Sbjct: 244 AMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKT 303
Query: 120 DCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRT 179
D L A+ RS+ ++I + +A +R++L KALY RLF ++V++
Sbjct: 304 DQQSLSIALCYRSI---STGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKI 360
Query: 180 NKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREE 239
N + K V+GILDIYGFE + N FEQ INFCNEKL QLF ++ L+ E
Sbjct: 361 NTIINCTTE-KGPVIGILDIYGFEVFQN-----NSFEQLNINFCNEKLQQLFIELTLKSE 414
Query: 240 QEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSDEAFLLKLGSYSS 294
QEEY RE IEW +E+FNN IC++IE G++SLLDE S+D+ FL +
Sbjct: 415 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQ-- 472
Query: 295 SLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHR 354
L + + D S+ CFRL+HYAG V Y+VRGF++KN + L
Sbjct: 473 ----------FEKNPHLQSYVVS-KDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFG 521
Query: 355 DVSLAMYTSQHPLLKHLFPE 374
D+ +M +S PL++ LFP
Sbjct: 522 DLISSMQSSSDPLVQGLFPP 541
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 203 bits (518), Expect = 3e-57
Identities = 98/380 (25%), Positives = 159/380 (41%), Gaps = 46/380 (12%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
S ++ + + YSF+ + T ++DD F +
Sbjct: 239 QICSNAIPELNDVMLVTPDSGLYSFINQGCL-------------TVDNIDDVEEFKLCDE 285
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A + LGFT +E +FK AS+L +G + F E E +V L ++
Sbjct: 286 AFDILGFTKEEKQSMFKCTASILHMGEMKFKQR---PREEQAESDGTAEAEKVAFLCGIN 342
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
L A+ + + + + + + +L K+LY R+F ++V R N
Sbjct: 343 AGDLLKALLKPKVKVGTEM-------VTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVN 395
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
K + K +G+LDI GFE N FEQ IN+ NE+L Q F M EQ
Sbjct: 396 KTLDTKAKRN-YYIGVLDIAGFE-----IFDFNSFEQLCINYTNERLQQFFNHHMFILEQ 449
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSDEAFLLKLGSYSSS 295
EEY++E I W +++F + +C + GILS+L+EE + D++F KL
Sbjct: 450 EEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMG 509
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ T + P F L HYAG V Y++ G++EKN + ++ +
Sbjct: 510 KNR------------MFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINEN 557
Query: 356 VSLAMYTSQHPLLKHLFPEE 375
V + S+ PL+ LF
Sbjct: 558 VVALLGASKEPLVAELFKAP 577
Score = 61.3 bits (148), Expect = 2e-10
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 428 VFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWR 477
+ LEE R +RL + + Q RGY RK + K + +I ++ R+ R
Sbjct: 719 LGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIR 768
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 201 bits (512), Expect = 7e-57
Identities = 101/362 (27%), Positives = 172/362 (47%), Gaps = 45/362 (12%)
Query: 45 TSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTV 104
+ D F TR+A + +GF+ +E + IFK++A +L LGN+ F EG +
Sbjct: 267 DIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK----GAGEGAVL 322
Query: 105 SNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLC 164
+ L + ++ ++L+ A+ + G L+ L+ +++ +R++L
Sbjct: 323 KDKTALNAASTVFGVNPSVLEKALMEPRILA-------GRDLVAQHLNVEKSSSSRDALV 375
Query: 165 KALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCN 224
KALY RLF ++V + N + K +G+LDI GFE + N FEQ IN+ N
Sbjct: 376 KALYGRLFLWLVKKINNVLC--QERKAYFIGVLDISGFEIF-----KVNSFEQLCINYTN 428
Query: 225 EKLHQLFTDVMLREEQEEYRRENIEWCYVEFF-NNSAICDIIE-TNSHGILSLLDEES-- 280
EKL Q F M + EQEEY +E I W +++F ++ A D+I+ GIL+LLDE+S
Sbjct: 429 EKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVF 488
Query: 281 ---SDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTV 337
+D + KL S+ S ++ + F + HYAG V
Sbjct: 489 PNATDNTLITKLHSH------------------FSKKNAKYEEPRFSKTEFGVTHYAGQV 530
Query: 338 LYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLK 397
+Y ++ ++EKN + L +D+ L S ++ LF + A+ I++ ++ K
Sbjct: 531 MYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITV--AAQYK 588
Query: 398 YS 399
Sbjct: 589 EQ 590
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 194 bits (495), Expect = 2e-54
Identities = 109/380 (28%), Positives = 171/380 (45%), Gaps = 53/380 (13%)
Query: 11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
++ L NY+FL + V P D F T +A +GFT +
Sbjct: 222 MRNDLLLEGFNNYTFLSNGHV-------------PIPAQQDDEMFQETLEAMTIMGFTEE 268
Query: 71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
E I +VV+SVL+LGN+VF N T+ ++ ++ +VC L+ ++ T +I +
Sbjct: 269 EQTSILRVVSSVLQLGNIVFKKERN---TDQASMPDNTAAQKVCHLMGINVTDFTRSILT 325
Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
+ + ++ + +A +L KA + RLF +I+ R NKA+
Sbjct: 326 PRIKVGR-------DVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQG 378
Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
LGILDI GFE ++ N FEQ IN+ NEKL QLF M EQEEY+RE IEW
Sbjct: 379 ASFLGILDIAGFEIFEI-----NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 433
Query: 251 CYVEF-FNNSAICDIIE--TNSHGILSLLDEE-----SSDEAFLLKLGSYSSSLTPERGR 302
+++F + ++IE TN G+L+LLDEE ++D +F+ KL +
Sbjct: 434 NFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGN------- 486
Query: 303 GGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYT 362
F + HYAG V YN ++ KN + L+ +V+ +
Sbjct: 487 ----------HAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQ 536
Query: 363 SQHPLLKHLFPEETRVPEAQ 382
S + L+ + R+
Sbjct: 537 SSDKFVADLWKDVDRIVGLD 556
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 194 bits (495), Expect = 2e-54
Identities = 107/401 (26%), Positives = 170/401 (42%), Gaps = 54/401 (13%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
++ L + K L+L N + + K +DD + TR+
Sbjct: 202 QLCASAALPEFKTLRLG-NANYFHYTKQGGSP------------VIDGIDDAKEMVNTRQ 248
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
AC LG + + IF+++A +L LGNV F D L CDL+ +D
Sbjct: 249 ACTLLGISDSYQMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLMGVD 305
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
+ + R L + +S A R++L K +Y+ LF +IV+ N
Sbjct: 306 YEEMAHWLCHRKLATATET-------YIKPISKLHAINARDALAKHIYANLFNWIVDHVN 358
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
KA+ + +G+LDIYGFE ++ N FEQF IN+ NEKL Q F + + EQ
Sbjct: 359 KALH-STVKQHSFIGVLDIYGFETFE-----INSFEQFCINYANEKLQQQFNMHVFKLEQ 412
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
EEY +E I W ++F++N ++IE G+L LLDEE SD+ + KL + +
Sbjct: 413 EEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLN 471
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ L F ++H+A V Y GF+EKN + ++ +
Sbjct: 472 ------------------KCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEE 513
Query: 356 VSLAMYTSQH-PLLKHLFPEETRVPEAQPTRFRISILGSST 395
+ +S+ LL LF +E + + S T
Sbjct: 514 QIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRT 554
Score = 51.7 bits (123), Expect = 2e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 430 ELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKR 464
LE+ R D+L + IQK RG+ RK +++ +R
Sbjct: 696 YLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRR 730
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 194 bits (493), Expect = 9e-54
Identities = 104/399 (26%), Positives = 165/399 (41%), Gaps = 48/399 (12%)
Query: 1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
+S + +L + N +Y ++ + T P +DD+ + T
Sbjct: 241 QIMSNKKPELIDMLLITTNPYDYHYVSEGEI-------------TVPSIDDQEELMATDS 287
Query: 61 ACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMD 120
A + LGF+ DE I+K+ +V+ GN+ F E + L+ ++
Sbjct: 288 AIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQR---EEQAEPDGTEVADKAAYLMGLN 344
Query: 121 CTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTN 180
L A+ + + G+ + + E + +L KA+Y ++F ++V R N
Sbjct: 345 SAELLKALCYPRVGV-------GNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRIN 397
Query: 181 KAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ 240
+ + K ++ +G+LDI GFE +D N FEQ INF NEKL Q F M EQ
Sbjct: 398 QQLDTKQP-RQYFIGVLDIAGFEIFDF-----NSFEQLCINFTNEKLQQFFNHHMFVLEQ 451
Query: 241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYSSS 295
EEY++E IEW +++F + A C + GI S+L+EE +D +F KL
Sbjct: 452 EEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLG 511
Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
+ + F L HYAGTV YN+ G++EKN + L+
Sbjct: 512 KSNNFQKPKPA--------------KGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNET 557
Query: 356 VSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSS 394
V S L LF E + GSS
Sbjct: 558 VIGLYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGSS 596
Score = 60.9 bits (147), Expect = 3e-10
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 428 VFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLK---RKRSQIIIASAWRSWR 477
+ LEE R D+L ++ Q RG+ R ++ R+ S I RS+
Sbjct: 723 LGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFM 775
>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33
{Thermotoga maritima [TaxId: 2336]}
Length = 230
Score = 30.7 bits (69), Expect = 0.43
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 367 LLKHLFPEETRVPEAQPTRFR 387
+L+ +F E+ E +++
Sbjct: 210 VLERIFGEKVGFVETAEIKYK 230
>d1vzya1 d.193.1.1 (A:1-233) Heat shock protein 33, Hsp33 {Bacillus
subtilis [TaxId: 1423]}
Length = 233
Score = 29.2 bits (65), Expect = 1.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 367 LLKHLFPEETRVPEAQPTRF 386
+L+ + E+ + E P RF
Sbjct: 214 ILEEVLGEKPEILETMPVRF 233
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 27.4 bits (60), Expect = 4.2
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 9/135 (6%)
Query: 432 EEFRRD-RLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSM 490
EE RD ++ L + + Y + K+ + II + + F
Sbjct: 16 EELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTP-----ISEMGFAGIAVGA 70
Query: 491 LILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTH 550
+ R + S ++ ++ A + + G G
Sbjct: 71 AMAGLRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAA 127
Query: 551 HHHHQMGCLFHSEVH 565
H +
Sbjct: 128 QHSQCFAAWYGHCPG 142
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 27.6 bits (60), Expect = 5.6
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 449 VWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIK---YRVP 505
+ RGY +R + +K + ++ LS ++ L Q+K +RV
Sbjct: 366 LARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 425
Query: 506 ASEIYR-LSLSPYLDDIAVF 524
E+ L Y+ + AV
Sbjct: 426 LEEVESILLKHMYISETAVS 445
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 26.7 bits (58), Expect = 7.2
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 12/127 (9%)
Query: 432 EEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFV--PILFVLSTSS 489
+D + + V G R R + R + V
Sbjct: 32 NSLAKDP--TAVIFGEDVAFGGVFRCTVGLRDK-----YGKDRVFNTPLCEQGIVGFGIG 84
Query: 490 MLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGT 549
+ + + + +++ A + R+ +C + G G
Sbjct: 85 IAVTGATAIAEIQFAD---YIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHG 141
Query: 550 HHHHHQM 556
+H Q
Sbjct: 142 ALYHSQS 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,299,404
Number of extensions: 111133
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 16
Length of query: 602
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 511
Effective length of database: 1,158,166
Effective search space: 591822826
Effective search space used: 591822826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)