RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18110
         (249 letters)



>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes,  and
           related proteins, metallophosphatase domain.  PP1
           (protein phosphatase type 1) is a serine/threonine
           phosphatase that regulates many cellular processes
           including: cell-cycle progression, protein synthesis,
           muscle contraction, carbohydrate metabolism,
           transcription and neuronal signaling, through its
           interaction with at least 180 known targeting proteins. 
           PP1 occurs in all tissues and regulates many pathways,
           ranging from cell-cycle progression to carbohydrate
           metabolism.  Also included here are the PPKL (PP1 and
           kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
           fungal phosphatases.  These PPKLs have a large
           N-terminal kelch repeat in addition to a C-terminal
           phosphoesterase domain.  The PPP (phosphoprotein
           phosphatase) family, to which PP1 belongs, is one of two
           known protein phosphatase families specific for serine
           and threonine.  The PPP family also includes: PP2A, PP2B
           (calcineurin), PP4, PP5, PP6,  PP7, Bsu1, RdgC, PrpE,
           PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
           is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
           and -GNHE-).  The PPP enzyme family is ancient with
           members found in all eukaryotes, and in most bacterial
           and archeal genomes.  Dephosphorylation of
           phosphoserines and phosphothreonines on target proteins
           plays a central role in the regulation of many cellular
           processes.  PPPs belong to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 293

 Score =  444 bits (1145), Expect = e-160
 Identities = 176/187 (94%), Positives = 181/187 (96%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 122
           GDIHGQYYDLLRLFEYGGFPP SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR
Sbjct: 56  GDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 115

Query: 123 GNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPDLQS 182
           GNHECASINRIYGFYDECKRR+NIKLWKTFT+CFNCLPVAAI+DEKIFC HGGLSPDLQS
Sbjct: 116 GNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQS 175

Query: 183 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHDFD 242
           MEQIRRIMRPTDVPDQGLLCDLLWSDPDKD  GWGENDRGVSFTFG +VVAKFL+KHD D
Sbjct: 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLD 235

Query: 243 LICRAHQ 249
           LICRAHQ
Sbjct: 236 LICRAHQ 242



 Score =  118 bits (297), Expect = 5e-32
 Identities = 47/48 (97%), Positives = 48/48 (100%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
           VVE+GYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK
Sbjct: 243 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 290


>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
           Provisional.
          Length = 320

 Score =  357 bits (918), Expect = e-125
 Identities = 158/195 (81%), Positives = 175/195 (89%), Gaps = 1/195 (0%)

Query: 56  FSSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKY 114
             +PL + GD+HGQY+DLLRLFEYGG+PP SNYLFLGDYVDRGKQSLETICLLLAYKIKY
Sbjct: 57  LEAPLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 116

Query: 115 PENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
           PENFFLLRGNHECASINRIYGFYDECKRR+ IKLWKTFT+CFNCLPVAA++DEKI C HG
Sbjct: 117 PENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHG 176

Query: 175 GLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAK 234
           GLSP+L ++EQIRRIMRPTDVPD GLLCDLLWSDPDKD  GW +N+RGVS+ F  E+V  
Sbjct: 177 GLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQV 236

Query: 235 FLHKHDFDLICRAHQ 249
           FL KH+ DLICRAHQ
Sbjct: 237 FLKKHELDLICRAHQ 251



 Score = 97.8 bits (243), Expect = 4e-24
 Identities = 45/54 (83%), Positives = 51/54 (94%), Gaps = 1/54 (1%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKTKYEQG 54
           VVE+GYEFF+KRQLVTLFSAPNYCGEFDNAG+MM++DE+LMCSFQILK   EQG
Sbjct: 252 VVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPA-EQG 304


>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
           domain.  Large family of serine/threonine phosphatases,
           that includes PP1, PP2A and PP2B (calcineurin) family
           members.
          Length = 271

 Score =  308 bits (792), Expect = e-106
 Identities = 107/187 (57%), Positives = 138/187 (73%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 122
           GDIHGQ+ DLLRLF+  G PP +NY+FLGDYVDRG  S+E I LL A KI YP    LLR
Sbjct: 34  GDIHGQFDDLLRLFDKNGQPPETNYVFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLR 93

Query: 123 GNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPDLQS 182
           GNHE  S+N IYGFYDECKR++  ++++ F E F+ LP+AA+++ KI C HGGLSPDL +
Sbjct: 94  GNHESRSMNEIYGFYDECKRKYGERIYEKFNEAFSWLPLAALINGKILCMHGGLSPDLTT 153

Query: 183 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHDFD 242
           ++ IR++ RP + PD GLL DLLWSDPD+   G+G + RG S+ FG + V +FL K++  
Sbjct: 154 LDDIRKLKRPQEPPDDGLLIDLLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLK 213

Query: 243 LICRAHQ 249
           LI RAHQ
Sbjct: 214 LIIRAHQ 220



 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
           VV++GYEFFA  +LVT+FSAPNYC  F N  A++ VD+ L  +F+  K
Sbjct: 221 VVDDGYEFFADGKLVTIFSAPNYCDRFGNKAAVLKVDKDLKLTFEQFK 268


>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
           Provisional.
          Length = 294

 Score =  291 bits (746), Expect = 2e-99
 Identities = 125/189 (66%), Positives = 149/189 (78%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
           V GD HGQYYDLLR+FE  GFPP SNYLFLGDYVDRGK S+ETI L   YKI YPENFFL
Sbjct: 56  VCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFL 115

Query: 121 LRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPDL 180
           LRGNHECASIN++YGF+D+ KRR+NIKL+K FT+ FN +PV  ++ EKI C HGGLSPDL
Sbjct: 116 LRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDL 175

Query: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHD 240
            S+  +  I RP DVPD+G+LCDLLW+DP+ +  G+ E+DRGVS+ FG ++V  FL   D
Sbjct: 176 TSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVD 235

Query: 241 FDLICRAHQ 249
            DLI RAHQ
Sbjct: 236 MDLIVRAHQ 244



 Score = 80.3 bits (198), Expect = 9e-18
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQIL 47
           V+E GY FFA RQLVT+FSAPNYCGEFDN  A+M++D+ L CSF I+
Sbjct: 245 VMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLII 291


>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
           phosphatases, metallophosphatase domain.  PP2A-like
           family of phosphoprotein phosphatases (PPP's) including
           PP4 and PP6.  PP2A (Protein phosphatase 2A) is a
           critical regulator of many cellular activities.  PP2A
           comprises about 1% of total cellular proteins.  PP2A,
           together with protein phosphatase 1 (PP1), accounts for
           more than 90% of all serine/threonine phosphatase
           activities in most cells and tissues. The PP2A subunit
           in addition to having a catalytic domain homologous to
           PP1, has a unique C-terminal tail, containing a motif
           that is conserved in the catalytic subunits of all
           PP2A-like phosphatases including PP4 and PP6, and has an
           important role in PP2A regulation.  The PP2A-like family
           of phosphatases all share a similar heterotrimeric
           architecture, that includes: a 65kDa scaffolding subunit
           (A), a 36kDa catalytic subunit (C), and one of 18
           regulatory subunits (B).  The PPP (phosphoprotein
           phosphatase) family, to which PP2A belongs, is one of
           two known protein phosphatase families specific for
           serine and threonine.  The PPP family also includes:
           PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
           PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
           domain is defined by three conserved motifs (-GDXHG-,
           -GDXVDRG- and -GNHE-).  The PPP enzyme family is ancient
           with members found in all eukaryotes, and in most
           bacterial and archeal genomes.  Dephosphorylation of
           phosphoserines and phosphothreonines on target proteins
           plays a central role in the regulation of many cellular
           processes.  PPPs belong to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 285

 Score =  290 bits (745), Expect = 3e-99
 Identities = 112/195 (57%), Positives = 142/195 (72%), Gaps = 3/195 (1%)

Query: 57  SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
            SP+ V GDIHGQ+YDLL LF  GG PP +NYLFLGDYVDRG  S+ET  LLLA K++YP
Sbjct: 41  RSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYP 100

Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
           +   LLRGNHE   I ++YGFYDEC R++ N  +WK  T+ F+ LP+AA++D +IFC HG
Sbjct: 101 DRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHG 160

Query: 175 GLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAK 234
           GLSP + +++QIR I R  +VP +G +CDLLWSDPD D  GWG + RG  + FG +VV +
Sbjct: 161 GLSPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPD-DIEGWGISPRGAGYLFGQDVVEE 219

Query: 235 FLHKHDFDLICRAHQ 249
           F H +   LICRAHQ
Sbjct: 220 FNHNNGLTLICRAHQ 234



 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI 46
           +V EGY++    +LVT++SAPNYC    N  ++M +DE L  SF++
Sbjct: 235 LVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKV 280


>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
           Provisional.
          Length = 303

 Score =  234 bits (598), Expect = 8e-77
 Identities = 97/195 (49%), Positives = 136/195 (69%), Gaps = 3/195 (1%)

Query: 57  SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
            +P+ V GDIHGQ+YDL  LF+ GG  P +NY+F+GD+VDRG  S+ET+  LL  K+KYP
Sbjct: 42  RAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYP 101

Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
            N  LLRGNHE     ++YGFY+E  R++ N   W+ F + F+CLP+AA+++ +I C HG
Sbjct: 102 GNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHG 161

Query: 175 GLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAK 234
           GLSPD+++++QIR I R  ++P +G  CDL+WSDP+ +   W  N RG  + FGA+V  +
Sbjct: 162 GLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPE-EVEYWAVNSRGAGYLFGAKVTKE 220

Query: 235 FLHKHDFDLICRAHQ 249
           F   +D  LICRAHQ
Sbjct: 221 FCRLNDLTLICRAHQ 235



 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 1   VVEEGYEF-FAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
           +V EGY++ F  + LVT++SAPNYC    N  +++ +DE L  +++  K
Sbjct: 236 LVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFK 284


>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
           Serine/threonine protein phosphatase-5 (PP5) is a member
           of the PPP gene family of protein phosphatases that is
           highly conserved among eukaryotes and widely expressed
           in mammalian tissues. PP5 has a C-terminal phosphatase
           domain and an extended N-terminal TPR (tetratricopeptide
           repeat) domain containing three TPR motifs.  The PPP
           (phosphoprotein phosphatase) family, to which PP5
           belongs, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP2B (calcineurin),
           PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
           hydrolase. The PPP catalytic domain is defined by three
           conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The
           PPP enzyme family is ancient with members found in all
           eukaryotes, and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 316

 Score =  220 bits (563), Expect = 3e-71
 Identities = 87/191 (45%), Positives = 126/191 (65%), Gaps = 3/191 (1%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           V GD HGQ+YDLL +FE  G P  +N YLF GD+VDRG  S+E I  L A+K+ YP +F 
Sbjct: 64  VCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFH 123

Query: 120 LLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGL-SP 178
           L RGNHE  ++N++YGF  E K ++N +++  F+E FN LP+A +++ K+   HGGL S 
Sbjct: 124 LNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSD 183

Query: 179 DLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHK 238
           D  +++ IR+I R    PD GL+C+LLWSDP +   G   + RGV   FG +V  +FL +
Sbjct: 184 DGVTLDDIRKIDRFRQPPDSGLMCELLWSDP-QPQPGRSPSKRGVGCQFGPDVTKRFLEE 242

Query: 239 HDFDLICRAHQ 249
           ++ + I R+H+
Sbjct: 243 NNLEYIIRSHE 253



 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVD 37
           V +EGYE     + +T+FSAPNYC +  N GA + + 
Sbjct: 254 VKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRIT 290


>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain.  PP2B
           (calcineurin) is a unique serine/threonine protein
           phosphatase in its regulation by a second messenger
           (calcium and calmodulin).  PP2B is involved in many
           biological processes including immune responses, the
           second messenger cAMP pathway, sodium/potassium ion
           transport in the nephron, cell cycle progression in
           lower eukaryotes, cardiac hypertrophy, and memory
           formation.  PP2B is highly conserved from yeast to
           humans, but is absent from plants.  PP2B is a
           heterodimer consisting of a catalytic subunit (CnA) and
           a regulatory subunit (CnB); CnB  contains four Ca2+
           binding motifs referred to as EF hands.  The PPP
           (phosphoprotein phosphatase) family, to which PP2B
           belongs, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
           Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
           catalytic domain is defined by three conserved motifs
           (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme family
           is ancient with members found in all eukaryotes, and in
           most bacterial and archeal genomes.  Dephosphorylation
           of phosphoserines and phosphothreonines on target
           proteins plays a central role in the regulation of many
           cellular processes.  PPPs belong to the
           metallophosphatase (MPP) superfamily.  MPPs are
           functionally diverse, but all share a conserved domain
           with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 305

 Score =  220 bits (562), Expect = 3e-71
 Identities = 90/196 (45%), Positives = 128/196 (65%), Gaps = 7/196 (3%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
           V GDIHGQ+YDLL+LFE GG P  + YLFLGDYVDRG  S+E +  L A KI YP+  FL
Sbjct: 47  VCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFL 106

Query: 121 LRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPDL 180
           LRGNHEC  +   + F  ECK +++ +++    E F+CLP+AA+++++  C HGGLSP+L
Sbjct: 107 LRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPEL 166

Query: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDP------DKDTMGWGEND-RGVSFTFGAEVVA 233
           ++++ IR++ R  + P  G +CDLLWSDP      +K    +  N  RG S+ +    V 
Sbjct: 167 KTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVC 226

Query: 234 KFLHKHDFDLICRAHQ 249
           +FL K++   I RAH+
Sbjct: 227 EFLQKNNLLSIIRAHE 242



 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 3   EEGYEFFAKRQ------LVTLFSAPNYCGEFDNAGAMMSVDETLMC 42
           + GY  + K Q      L+T+FSAPNY   ++N  A++  +  +M 
Sbjct: 245 DAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN 290


>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
           related proteins, C-terminal metallophosphatase domain. 
           Bsu1 encodes a nuclear serine-threonine protein
           phosphatase found in plants and protozoans.  Bsu1 has a
           C-terminal phosphatase domain and an N-terminal
           Kelch-repeat domain.  Bsu1 is preferentially expressed
           in elongating plant cells. It modulates the
           phosphorylation state of Bes1, a transcriptional
           regulator phosphorylated by the glycogen synthase kinase
           Bin2, as part of a steroid hormone signal transduction
           pathway.  The PPP (phosphoprotein phosphatase) family,
           to which Bsu1 belongs, is one of two known protein
           phosphatase families specific for serine and threonine. 
           The PPP family also includes: PP1, PP2A, PP2B
           (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
           PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
           is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
           and -GNHE-).  The PPP enzyme family is ancient with
           members found in all eukaryotes, and in most bacterial
           and archeal genomes.  Dephosphorylation of
           phosphoserines and phosphothreonines on target proteins
           plays a central role in the regulation of many cellular
           processes.  PPPs belong to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 311

 Score =  212 bits (541), Expect = 3e-68
 Identities = 90/209 (43%), Positives = 123/209 (58%), Gaps = 22/209 (10%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPIS--------NYLFLGDYVDRGKQSLETICLLLAYKIKY 114
           GDIHGQ+ DL+RLF+  G P           +YLFLGDYVDRG  SLETICLLLA K+KY
Sbjct: 54  GDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKY 113

Query: 115 PENFFLLRGNHECASINRIYGFYDECKRRFN------IKLWKTFTECFNCLPVAAIVDEK 168
           P    L+RGNHE   IN ++GF +ECK R          +W+     F  LP+AAI+++K
Sbjct: 114 PNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDK 173

Query: 169 IFCCHGGLSPDLQSMEQIRRIMRP-TDVPDQGLLCDLLWSDP-DKDTM-GWGENDR---- 221
           I C HGG+   +  + +I  + RP T    + ++ DLLWSDP + D++ G   N      
Sbjct: 174 ILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRG 233

Query: 222 -GVSFTFGAEVVAKFLHKHDFDLICRAHQ 249
            G+   FG + V +FL ++D  +I RAH+
Sbjct: 234 PGLIVKFGPDRVHRFLEENDLQMIIRAHE 262



 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 2   VEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMM 34
           V +G+E FA+ +L+TLFSA NYCG   NAGA++
Sbjct: 264 VMDGFERFAQGKLITLFSATNYCGTAGNAGAIL 296


>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
           metallophosphatase superfamily, metallophosphatase
           domain.  The PPP (phosphoprotein phosphatase) family is
           one of two known protein phosphatase families specific
           for serine and threonine.  This family includes: PP1,
           PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
           RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
           catalytic domain is defined by three conserved motifs
           (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme family
           is ancient with members found in all eukaryotes, and in
           most bacterial and archeal genomes.  Dephosphorylation
           of phosphoserines and phosphothreonines on target
           proteins plays a central role in the regulation of many
           cellular processes.  PPPs belong to the
           metallophosphatase (MPP) superfamily.  MPPs are
           functionally diverse, but all share a conserved domain
           with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 225

 Score =  199 bits (509), Expect = 2e-64
 Identities = 91/197 (46%), Positives = 114/197 (57%), Gaps = 21/197 (10%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 122
           GDIHG   DLLRL E  GFPP    +FLGDYVDRG  S+E I LLLA KI  P+N  LLR
Sbjct: 4   GDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLR 62

Query: 123 GNHECASINRIYGFYDE---------CKRRFNIKLWKTFTECFNCLPVAAIVD-EKIFCC 172
           GNHE   +N +YGFYDE           ++    LW+ F + F  LP+AA+++ +K+ C 
Sbjct: 63  GNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCV 122

Query: 173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVV 232
           HGGLSP L   EQI+      + P+  L  DLLWSDP +   G+G + RG     G + V
Sbjct: 123 HGGLSPGLPLEEQIK------EEPEDQLPEDLLWSDPLELPGGFGSSRRGG----GPDAV 172

Query: 233 AKFLHKHDFDLICRAHQ 249
             FL K+   LI R H 
Sbjct: 173 EWFLKKNGLKLIVRGHT 189



 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV 36
            VEEGYEF     L+T+ S  NYCG   N  A + +
Sbjct: 190 PVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225


>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
           proteins, metallophosphatase domain.  RdgC (retinal
           degeneration C) is a vertebrate serine-threonine protein
           phosphatase that is required to prevent light-induced
           retinal degeneration.  In addition to its catalytic
           domain, RdgC has two C-terminal EF hands.  Homologs of
           RdgC include the human phosphatases protein phosphatase
           with EF hands 1 and -2 (PPEF-1 and -2).  PPEF-1
           transcripts are present at low levels in the retina,
           PPEF-2 transcripts and PPEF-2 protein are present at
           high levels in photoreceptors.  The PPP (phosphoprotein
           phosphatase) family, to which RdgC belongs, is one of
           two known protein phosphatase families specific for
           serine and threonine.  The PPP family also includes:
           PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
           PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
           domain is defined by three conserved motifs (-GDXHG-,
           -GDXVDRG- and -GNHE-).  The PPP enzyme family is ancient
           with members found in all eukaryotes, and in most
           bacterial and archeal genomes.  Dephosphorylation of
           phosphoserines and phosphothreonines on target proteins
           plays a central role in the regulation of many cellular
           processes.  PPPs belong to the metallophosphatase (MPP)
           superfamily.  MPPs are functionally diverse, but all
           share a conserved domain with an active site consisting
           of two metal ions (usually manganese, iron, or zinc)
           coordinated with octahedral geometry by a cage of
           histidine, aspartate, and asparagine residues. The MPP
           superfamily includes: Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 321

 Score =  149 bits (379), Expect = 1e-43
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 32/220 (14%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           + GD+HG+  DL  +F   G P   N Y+F GD+VDRGK+S+E + +L A+ + YP    
Sbjct: 55  ICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVH 114

Query: 120 LLRGNHECASINRIYGFYDECKRRFNI---KLWKTFTECFNCLPVAAIVDEKIFCCHGGL 176
           L RGNHE   +N  YGF  E   ++ +   K+ +   + F+ LP+A I+D KI   HGG+
Sbjct: 115 LNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGI 174

Query: 177 S--PDLQSMEQIRR-----IMRP--------TDVPDQGLLC-----------DLLWSDPD 210
           S   DL  +++I R     ++RP            ++               D+LWSDP 
Sbjct: 175 SDSTDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDP- 233

Query: 211 KDTMGWGEND-RGVSFTFGAEVVAKFLHKHDFDLICRAHQ 249
           K   G   N  RG    FG +V +K L KH   L+ R+H+
Sbjct: 234 KAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHE 273



 Score = 37.0 bits (86), Expect = 0.006
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 4   EGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSF 44
           EGYEF    +++T+FSA NY  E  N GA + +   L   F
Sbjct: 277 EGYEFCHNNKVITIFSASNYYEEGSNRGAYIKLGPDLTPHF 317


>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain.  PP7 is a plant
           phosphoprotein phosphatase that is highly expressed in a
           subset of stomata and thought to play an important role
           in sensory signaling.  PP7 acts as a positive regulator
           of signaling downstream of cryptochrome blue light
           photoreceptors.  PP7 also controls amplification of
           phytochrome signaling, and interacts with
           nucleotidediphosphate kinase 2 (NDPK2), a positive
           regulator of phytochrome signalling.  In addition, PP7
           interacts with heat shock transcription factor HSF and
           up-regulates protective heat shock proteins.  PP7 may
           also play a role in salicylic acid-dependent defense
           signaling.  The PPP (phosphoprotein phosphatase) family,
           to which PP7 belongs, is one of two known protein
           phosphatase families specific for serine and threonine. 
           The PPP family also includes: PP2A, PP2B (calcineurin),
           PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
           hydrolase. The PPP catalytic domain is defined by three
           conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The
           PPP enzyme family is ancient with members found in all
           eukaryotes, and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 377

 Score =  148 bits (374), Expect = 2e-42
 Identities = 81/256 (31%), Positives = 122/256 (47%), Gaps = 46/256 (17%)

Query: 37  DETLMCSFQILK-----TKYEQGLFSSPLVPGDIHGQYYDLLRLFEYGGFP-PISNYLFL 90
           D  ++ + +IL       + +       +V GD+HGQ +D+L L E  GFP     Y+F 
Sbjct: 41  DSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFN 100

Query: 91  GDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIK--- 147
           GDYVDRG   LET  LLL++K+  P+  +LLRGNHE      +YGF  E   ++  K   
Sbjct: 101 GDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKH 160

Query: 148 LWKTFTECFNCLPVAAIVDEKIFCCHGGL--SPD-------------------------- 179
           +++    CF  LP+A+I+  +++  HGGL  SP                           
Sbjct: 161 VYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKL 220

Query: 180 --LQSMEQIRRIMRPTDVPDQGLLC---DLLWSDPDKDTMGWGEND-RGVSFTFGAEVVA 233
             L  + + RR +   D P +G      D+LWSDP     G   N  RG+   +G +   
Sbjct: 221 GTLDDLMKARRSV--LDPPGEGSNLIPGDVLWSDPSLTP-GLSPNKQRGIGLLWGPDCTE 277

Query: 234 KFLHKHDFDLICRAHQ 249
           +FL K++  LI R+H+
Sbjct: 278 EFLEKNNLKLIIRSHE 293


>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase.  This
           family includes a diverse range of phosphoesterases,
           including protein phosphoserine phosphatases,
           nucleotidases, sphingomyelin phosphodiesterases and
           2'-3' cAMP phosphodiesterases as well as nucleases such
           as bacterial SbcD or yeast MRE11. The most conserved
           regions in this superfamily centre around the metal
           chelating residues.
          Length = 185

 Score =  117 bits (293), Expect = 1e-32
 Identities = 67/215 (31%), Positives = 83/215 (38%), Gaps = 66/215 (30%)

Query: 63  GDIHGQYYDL---LRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           GD+HG   DL   L L E  G P     LFLGD VDRG  SLE + LL A K+K P   +
Sbjct: 6   GDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAPGPVY 65

Query: 120 LLRGNHECASINRIYGFYDECKRRF-------------------------NIKLWKTFTE 154
           L+RGNH+  S N   GFY EC                                +W+ F E
Sbjct: 66  LVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVWEEFLE 125

Query: 155 CFNCLPVAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTM 214
             + L +AA+VD KI   HG LSP L S + I                            
Sbjct: 126 LLDLLLLAALVDGKILLVHGPLSPSLDSGDDI---------------------------- 157

Query: 215 GWGENDRGVSFTFGAEVVAKFLHKHDFDLICRAHQ 249
                     + FG E +   L  +  DL+ R H 
Sbjct: 158 ----------YLFGEEALEDLLKDNGVDLVLRGHT 182


>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
           serine/threonine protein phosphatases [Signal
           transduction mechanisms].
          Length = 155

 Score = 93.6 bits (232), Expect = 6e-24
 Identities = 52/129 (40%), Positives = 67/129 (51%), Gaps = 10/129 (7%)

Query: 130 INRIYGFYDECKRRFNIKL-WKT---FTECFNCLPVAAIVDE-KIFCCHGGLSPDL-QSM 183
           +  +YGFYDE  R++  +L W       E F+ LP+AA+ +  K+ C HGGLSP L + +
Sbjct: 3   LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLL 62

Query: 184 EQIRRIMRPT--DVPDQGLLCDLLWSDPD-KDTMGWGENDRGVSFTFGAEVVAKFLHKHD 240
           + I  + R    +VP  G   DLLWSDPD  D   W    RGV    G  V A F   H 
Sbjct: 63  DIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGGD-VTAVFGIVHT 121

Query: 241 FDLICRAHQ 249
             LI RAH 
Sbjct: 122 PKLIERAHV 130



 Score = 27.7 bits (61), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 1   VVEEGYEFFAKRQLVTLFSAPNYCG 25
           + +          L+T FSAPNYC 
Sbjct: 131 LYDIDTGAVFGGGLLTAFSAPNYCY 155


>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
           PrpA and PrpB are bacterial type I serine/threonine and
           tyrosine phosphatases thought to modulate the expression
           of proteins that protect the cell upon accumulation of
           misfolded proteins in the periplasm.  The PPP
           (phosphoprotein phosphatase) family, to which PrpA and
           PrpB belong, is one of two known protein phosphatase
           families specific for serine and threonine.  This family
           also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
           PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
           catalytic domain is defined by three conserved motifs
           (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme family
           is ancient with members found in all eukaryotes, and in
           most bacterial and archeal genomes.  Dephosphorylation
           of phosphoserines and phosphothreonines on target
           proteins plays a central role in the regulation of many
           cellular processes.  PPPs belong to the
           metallophosphatase (MPP) superfamily.  MPPs are
           functionally diverse, but all share a conserved domain
           with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 207

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 42/165 (25%), Positives = 64/165 (38%), Gaps = 33/165 (20%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISNYLF-LGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           V GDIHG Y  L +  +  GF P  + L  +GD +DRG +SL   CL L   +  P  F 
Sbjct: 5   VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLA--CLEL---LLEP-WFH 58

Query: 120 LLRGNHECASIN------------RIYG--FYDECKRRFNIKLWKTFTECFNCLPVAAIV 165
            +RGNHE  +I+               G  ++ +       +           LP+A  V
Sbjct: 59  AVRGNHEQMAIDALRAEPLDAVRWLANGGEWFLDLPDEELRRWL---ALKLEQLPLAIEV 115

Query: 166 ---DEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
                K+   H    P     + +  +    +  ++     LLWS
Sbjct: 116 ETEGGKVGIVHAD-YPSDDWSDGVGAVTLRPEDIEE-----LLWS 154


>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
           metallophosphatase domain.  Metallophosphatases (MPPs),
           also known as metallophosphoesterases,
           phosphodiesterases (PDEs), binuclear
           metallophosphoesterases, and dimetal-containing
           phosphoesterases (DMPs), represent a diverse superfamily
           of enzymes with a conserved domain containing an active
           site consisting of two metal ions (usually manganese,
           iron, or zinc) coordinated with octahedral geometry by a
           cage of histidine, aspartate, and asparagine residues.
           This superfamily includes: the phosphoprotein
           phosphatases (PPPs), Mre11/SbcD-like exonucleases,
           Dbr1-like RNA lariat debranching enzymes, YfcE-like
           phosphodiesterases, purple acid phosphatases (PAPs),
           YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 131

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 63  GDIHGQYYDLLRL--FEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
            DIHG    L  +              L LGD V  G    E +   LA  +      ++
Sbjct: 4   SDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYV 63

Query: 121 LRGNHE 126
           + GNH+
Sbjct: 64  VPGNHD 69


>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
           metallophosphatase domain.  This family includes
           bacterial, eukaryotic, and archeal proteins orthologous
           to the Shewanella cold-active protein-tyrosine
           phosphatase, CAPTPase.  CAPTPase is an uncharacterized
           protein that belongs to the Shelph (Shewanella-like
           phosphatase) family of PPP (phosphoprotein
           phosphatases).  The PPP family is one of two known
           protein phosphatase families specific for serine and
           threonine.  In addition to Shelps, the PPP family also
           includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
           PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
           The PPP catalytic domain is defined by three conserved
           motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme
           family is ancient with members found in all eukaryotes,
           and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 208

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 39/147 (26%), Positives = 56/147 (38%), Gaps = 42/147 (28%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPIS---NYLF-------LGDYVDRGKQSLETICLLLAYKI 112
           GD+HG       + +  G   I    +++        LGD  DRG   +E + LL  YK+
Sbjct: 4   GDLHGDLDAFREILKGAGV--IDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLL--YKL 59

Query: 113 KYPE------NFFLLRGNHECASINRIYG------------FYDECKRRFNIKLWKTFTE 154
           +  E          L GNHE   +  + G            F     RR   +L+    E
Sbjct: 60  E-QEAAKAGGKVHFLLGNHE---LMNLCGDFRYVHPKYFNEFGGLAMRRR--ELFSPGGE 113

Query: 155 CFNCL---PVAAIVDEKIFCCHGGLSP 178
               L   PV   V++ +F  HGGL P
Sbjct: 114 LGRWLRSKPVIVKVNDTLF-VHGGLGP 139


>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
           proteins, metallophosphatase domain.  PA3087 is an
           uncharacterized protein from Pseudomonas aeruginosa with
           a metallophosphatase domain that belongs to the
           phosphoprotein phosphatase (PPP) family.  The PPP family
           also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
           PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
           hydrolase. The PPP catalytic domain is defined by three
           conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The
           PPP enzyme family is ancient with members found in all
           eukaryotes, and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 222

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 31/128 (24%)

Query: 63  GDIHGQYYDLLRLFEYGGF--------PPISNYLFLGDYVDRGKQSLETI---------- 104
           GDIHG    L+ L    G+         P    +FLGD +DRG +  E +          
Sbjct: 5   GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAG 64

Query: 105 ---CLL-------LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTE 154
               ++       +A+  K P     LR  H   ++ +   F ++   R + +  K + E
Sbjct: 65  HALAVMGNHEFNAIAWHTKDPSGGEWLR-AHSKKNLRQHQAFLEQF--REHSEEHKDWLE 121

Query: 155 CFNCLPVA 162
            F  LP+ 
Sbjct: 122 WFKTLPLF 129


>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
           metallophosphatase domain.  ApaH (also known as
           symmetrically cleaving Ap4A hydrolase and
           bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
           of the PPP (phosphoprotein phosphatase) family of
           serine/threonine phosphatases that hydrolyzes the
           nucleotide-signaling molecule diadenosine tetraphosphate
           (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
           Gp(4)G, and other extending compounds.  Null mutations
           in apaH result in high intracellular levels of Ap(4)A
           which correlate with multiple phenotypes, including a
           decreased expression of catabolite-repressible genes, a
           reduction in the expression of flagellar operons, and an
           increased sensitivity to UV  and heat.  Ap4A hydrolase
           is important in responding to heat shock and oxidative
           stress via regulating the concentration of Ap4A in
           bacteria.  Ap4A hydrolase is also thought to play a role
           in siderophore production, but the mechanism by which
           ApaH interacts with siderophore pathways in unknown.
           The PPP (phosphoprotein phosphatase) family, to which
           ApaH belongs, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP2B (calcineurin),
           PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
           PPP catalytic domain is defined by three conserved
           motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The PPP enzyme
           family is ancient with members found in all eukaryotes,
           and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 257

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
           GDI G Y +L RL E   F P  + L  +GD V+RG  SLET+  + +      ++   +
Sbjct: 5   GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTV 60

Query: 122 RGNHE 126
            GNH+
Sbjct: 61  LGNHD 65


>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
          Length = 275

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
           GDI G Y +L RL E   F P  + L  +GD V+RG  SLE     L +     ++   +
Sbjct: 7   GDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEV----LRFVKSLGDSAVTV 62

Query: 122 RGNHE 126
            GNH+
Sbjct: 63  LGNHD 67


>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
          Length = 235

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 60  LVPGDIHGQYYDLLRLFE--YGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 117
           +VP DIHG+Y  LL + +       P    +FLGDYVDRGK+S + +  +        +N
Sbjct: 5   VVP-DIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DDN 62

Query: 118 FFLLRGNHE 126
              L GNH+
Sbjct: 63  VVTLLGNHD 71


>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
           Provisional.
          Length = 218

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 61  VPGDIHGQYYDLLRLFEYGGFPPISNYLF-LGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           + GDIHG +  L+R   +  F P  + L  +GD +DRG QSL   CL L  +        
Sbjct: 21  LVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR--CLQLLEE----HWVR 74

Query: 120 LLRGNHE 126
            +RGNHE
Sbjct: 75  AVRGNHE 81


>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
           2; Provisional.
          Length = 218

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 61  VPGDIHGQYYDLL-RLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
           V GDIHG+Y  L  RL +    P     + +GD +DRG +SL  + LL       P  F 
Sbjct: 19  VVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL-----NQPW-FI 72

Query: 120 LLRGNHECASIN 131
            ++GNHE  +++
Sbjct: 73  SVKGNHEAMALD 84


>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
           domain.  Rhilphs (Rhizobiales/ Rhodobacterales/
           Rhodospirillaceae-like phosphatases) are a
           phylogenetically distinct group of PPP (phosphoprotein
           phosphatases), found only in land plants. They are named
           for their close relationship to to PPP phosphatases from
           alpha-Proteobacteria, including Rhizobiales,
           Rhodobacterales and Rhodospirillaceae.  The PPP
           (phosphoprotein phosphatase) family, to which the
           Rhilphs belong, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP2B (calcineurin),
           PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
           ApA4 hydrolase. The PPP catalytic domain is defined by
           three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). 
           The PPP enzyme family is ancient with members found in
           all eukaryotes, and in most bacterial and archeal
           genomes.  Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 304

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 63  GDIHGQYYDLLRLFE--YGGFPP----ISNYLFLGDYVDRGKQSLETICLLLAYKIKYP- 115
           GDIHG    L  L+        P     +  +FLGDY DRG ++ + I  L++   K+P 
Sbjct: 8   GDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPK 67

Query: 116 ENFFLLRGNHECA 128
           +    L GNH+ A
Sbjct: 68  QRHVFLCGNHDFA 80


>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
           metallophosphatase domain.  PrpE (protein phosphatase E)
           is a bacterial member of the PPP (phosphoprotein
           phosphatase) family of serine/threonine phosphatases and
           a key signal transduction pathway component controlling
           the expression of spore germination receptors GerA and
           GerK in Bacillus subtilis. PrpE is closely related to
           ApaH (also known symmetrical Ap(4)A hydrolase and
           bis(5'nucleosyl)-tetraphosphatase).  PrpE has
           specificity for phosphotyrosine only, unlike the
           serine/threonine phosphatases to which it is related.
           The Bacilli members of this family are single domain
           proteins while the other members have N- and C-terminal
           domains in addition to this phosphatase domain.  The PPP
           (phosphoprotein phosphatase) family, to which PrpE
           belongs, is one of two known protein phosphatase
           families specific for serine and threonine.  The PPP
           family also includes: PP1, PP2A, PP2B (calcineurin),
           PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
           hydrolase. The PPP catalytic domain is defined by three
           conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).  The
           PPP enzyme family is ancient with members found in all
           eukaryotes, and in most bacterial and archeal genomes.
           Dephosphorylation of phosphoserines and
           phosphothreonines on target proteins plays a central
           role in the regulation of many cellular processes.  PPPs
           belong to the metallophosphatase (MPP) superfamily.
           MPPs are functionally diverse, but all share a conserved
           domain with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets.  This domain is thought to allow for
           productive metal coordination.
          Length = 234

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 63  GDIHGQYYDLLRLFEYGGF----------PPISNYLFLGDYVDRGKQSLETICLLL-AYK 111
           GD+HG Y +L  L E  G+          P     +F+GD VDRG  S E + L++    
Sbjct: 7   GDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA 66

Query: 112 IKYPENFFLLRGNHE 126
                    + GNH+
Sbjct: 67  AGAA---LCVPGNHD 78


>gnl|CDD|233082 TIGR00668, apaH, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). 
           Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a
           regulatory metabolite of stress conditions. It is
           hydrolyzed to two ADP by this enzyme. Alternate names
           include diadenosine-tetraphosphatase and Ap4A hydrolase
           [Cellular processes, Adaptations to atypical
           conditions].
          Length = 279

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 29/202 (14%)

Query: 63  GDIHGQYYDLLRLFEYGGFPPISNYLFL-GDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
           GD+HG Y +L  L E   F P  + L+L GD V RG  SLE    +L Y     +   L+
Sbjct: 7   GDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKSLGDAVRLV 62

Query: 122 RGNHECASINRIYGFY-----DECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFC-CHGG 175
            GNH+   +    G       D                     P+    +EK     H G
Sbjct: 63  LGNHDLHLLAVFAGISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAG 122

Query: 176 LSP--DLQSMEQIRR----IMRPTDVPDQGLLCDLLWSD-PDKDTMGWGENDRGVS---F 225
           ++P  DLQ+ ++  R    ++     P      D ++ D P++    W    +G++   F
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYP---FFLDAMYGDMPNR----WSPELQGLARLRF 175

Query: 226 TFGAEVVAKFLH-KHDFDLICR 246
              A    +F       D+  +
Sbjct: 176 IINAFTRMRFCFPNGQLDMYSK 197


>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
           Provisional.
          Length = 245

 Score = 36.2 bits (84), Expect = 0.010
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 21/87 (24%)

Query: 63  GDIHGQYYDLLRLFEYGGFP-----PISN----YLFLGDYVDRGKQSLETI---CLLLAY 110
           GDIHG Y +   L E  G+      P+        F+GD  DRG  SL  I     L+  
Sbjct: 7   GDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEK 66

Query: 111 KIKYPENFFLLRGNHECASINRIYGFY 137
           K  Y      + GNH C   N++Y F+
Sbjct: 67  KAAY-----YVPGNH-C---NKLYRFF 84


>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase.  Members
           of this protein family are the bacterial polynucleotide
           kinase-phosphatase (Pnkp) whose genes occur paired with
           genes for the 3' terminal RNA ribose
           2'-O-methyltransferase Hen1. All members of the seed
           alignment belong to a cassette with the Hen1. The pair
           acts in bacterial RNA repair. This enzyme performs
           end-healing reactions on broken RNA, preparing from the
           RNA ligase to close the break. The working hypothesis is
           that the combination of Pnkp (RNA repair) and Hen1 (RNA
           modification) serves to first repair RNA damage from
           ribotoxins and then perform a modification that prevents
           the damage from recurring [Transcription, RNA
           processing].
          Length = 851

 Score = 34.6 bits (80), Expect = 0.050
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 20/92 (21%)

Query: 50  KYEQGLFSSPLVPGDIHGQYYDLLRLFE--------------YGGFPPIS-NYLFLGDYV 94
           + E G F    + GD+HG   +L  L E                   P     +F+GD V
Sbjct: 176 RDEHGPFD---IIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLV 232

Query: 95  DRGKQSLETICLLLAYKIKYPENFFLLRGNHE 126
           DRG  S     L L   +        + GNH+
Sbjct: 233 DRGPDSPGV--LRLVMGMVAAGTALCVPGNHD 262


>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
          Length = 971

 Score = 30.6 bits (69), Expect = 0.81
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 84  ISNYLF-LGDYVDRGKQSL--ETICLLLAY-KIKYPENFFLLRGNHECASINRIYGFYDE 139
           I  Y+F   DY      SL    I   +AY K  YP  F  +  +H  AS +++  + +E
Sbjct: 662 IFEYIFSFADYGFNHSHSLAYSYISYWMAYLKHYYPLEFLSILLSHTSASKDKLLSYLNE 721

Query: 140 CKRRFNIKLWK 150
            K  FNI + K
Sbjct: 722 AK-EFNISIKK 731


>gnl|CDD|147832 pfam05894, Podovirus_Gp16, Podovirus DNA encapsidation protein
           (Gp16).  This family consists of several DNA
           encapsidation protein (Gp16) sequences from the
           phi-29-like viruses. Gene product 16 catalyzes the in
           vivo and in vitro genome-encapsidation reaction.
          Length = 333

 Score = 27.9 bits (62), Expect = 5.4
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 78  YGGFPP--ISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYG 135
           YG + P  + N+L L D V R ++ +  ICL  A  I  P  +FLL   H   SIN  + 
Sbjct: 127 YGSYDPNEVRNFLNLMDTVFRARERVRCICLSNAVSIVNP--YFLLF--HIEPSINEPFQ 182

Query: 136 FYDECKRRF 144
             DE    F
Sbjct: 183 VDDEAVITF 191


>gnl|CDD|182972 PRK11113, PRK11113, D-alanyl-D-alanine
           carboxypeptidase/endopeptidase; Provisional.
          Length = 477

 Score = 27.6 bits (62), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 149 WKTFTECFNCLPVAAIVDEKIF 170
           W   T+CF+  P AAIVD   F
Sbjct: 153 WNDLTQCFSAPPAAAIVDRNCF 174


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.144    0.466 

Gapped
Lambda     K      H
   0.267   0.0780    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,198,661
Number of extensions: 1251090
Number of successful extensions: 1215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 51
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)