RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18110
(249 letters)
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 434 bits (1119), Expect = e-155
Identities = 182/194 (93%), Positives = 187/194 (96%), Gaps = 1/194 (0%)
Query: 57 SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
+PL + GDIHGQYYDLLRLFEYGGFPP SNYLFLGDYVDRGKQSLETICLLLAYKIKYP
Sbjct: 56 EAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGG 175
ENFFLLRGNHECASINRIYGFYDECKRR+NIKLWKTFT+CFNCLP+AAIVDEKIFCCHGG
Sbjct: 116 ENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGG 175
Query: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKF 235
LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKD GWGENDRGVSFTFGAEVVAKF
Sbjct: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKF 235
Query: 236 LHKHDFDLICRAHQ 249
LHKHD DLICRAHQ
Sbjct: 236 LHKHDLDLICRAHQ 249
Score = 100 bits (252), Expect = 3e-25
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
VVE+GYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK
Sbjct: 250 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 297
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 430 bits (1109), Expect = e-154
Identities = 182/194 (93%), Positives = 187/194 (96%), Gaps = 1/194 (0%)
Query: 57 SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
+PL + GDIHGQYYDLLRLFEYGGFPP SNYLFLGDYVDRGKQSLETICLLLAYKIKYP
Sbjct: 55 EAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYP 114
Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGG 175
ENFFLLRGNHECASINRIYGFYDECKRR+NIKLWKTFT+CFNCLP+AAIVDEKIFCCHGG
Sbjct: 115 ENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGG 174
Query: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKF 235
LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKD GWGENDRGVSFTFGAEVVAKF
Sbjct: 175 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKF 234
Query: 236 LHKHDFDLICRAHQ 249
LHKHD DLICRAHQ
Sbjct: 235 LHKHDLDLICRAHQ 248
Score = 101 bits (253), Expect = 1e-25
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
VVE+GYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK
Sbjct: 249 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 296
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 415 bits (1070), Expect = e-148
Identities = 100/195 (51%), Positives = 137/195 (70%), Gaps = 3/195 (1%)
Query: 57 SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
P+ V GD+HGQ++DL+ LF GG P +NYLF+GDYVDRG S+ET+ LL+A K++Y
Sbjct: 49 RCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYR 108
Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRF-NIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
E +LRGNHE I ++YGFYDEC R++ N +WK FT+ F+ LP+ A+VD +IFC HG
Sbjct: 109 ERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
Query: 175 GLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAK 234
GLSP + +++ IR + R +VP +G +CDLLWSDPD D GWG + RG +TFG ++
Sbjct: 169 GLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRGAGYTFGQDISET 227
Query: 235 FLHKHDFDLICRAHQ 249
F H + L+ RAHQ
Sbjct: 228 FNHANGLTLVSRAHQ 242
Score = 105 bits (264), Expect = 3e-27
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILK 48
+V EGY + R +VT+FSAPNYC N A+M +D+TL SF
Sbjct: 243 LVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFD 290
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 398 bits (1025), Expect = e-141
Identities = 84/201 (41%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 57 SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
+P+ V GDIHGQ++DL++LFE GG P + YLFLGDYVDRG S+E + L A KI YP
Sbjct: 69 DAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYP 128
Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGG 175
+ FLLRGNHEC + + F ECK +++ +++ + F+CLP+AA+++++ C HGG
Sbjct: 129 KTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGG 188
Query: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGEND-------RGVSFTFG 228
LSP++ +++ IR++ R + P G +CD+LWSDP +D + RG S+ +
Sbjct: 189 LSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYS 248
Query: 229 AEVVAKFLHKHDFDLICRAHQ 249
V +FL ++ I RAH+
Sbjct: 249 YPAVCEFLQHNNLLSILRAHE 269
Score = 82.3 bits (204), Expect = 2e-18
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 1 VVEEGYEFFAKRQ------LVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQ 45
+ GY + K Q L+T+FSAPNY ++N A++ + +M Q
Sbjct: 270 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 320
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 390 bits (1004), Expect = e-138
Identities = 75/189 (39%), Positives = 108/189 (57%), Gaps = 3/189 (1%)
Query: 63 GDIHGQYYDLLRLFE-YGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GD HGQ+YD+L LF +G P YLF GD+VDRG S E L KI +P NFFL
Sbjct: 70 GDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLN 129
Query: 122 RGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGL-SPDL 180
RGNHE ++N+IYGF DECK +++ +++ F + F LP+A +++ HGGL S
Sbjct: 130 RGNHESDNMNKIYGFEDECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPS 189
Query: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHD 240
++ + I R P G +LLW+DP + G G + RG+ FG ++ +FL +
Sbjct: 190 ATLSDFKNIDRFAQPPRDGAFMELLWADPQ-EANGMGPSQRGLGHAFGPDITDRFLRNNK 248
Query: 241 FDLICRAHQ 249
I R+H+
Sbjct: 249 LRKIFRSHE 257
Score = 82.7 bits (205), Expect = 1e-18
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI----LKTKYEQ 53
+ G +F K +L+T+FSAPNYC N G ++ V E
Sbjct: 258 LRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIET 314
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 393 bits (1010), Expect = e-136
Identities = 84/201 (41%), Positives = 128/201 (63%), Gaps = 8/201 (3%)
Query: 57 SSPL-VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYP 115
+P+ V GDIHGQ++DL++LFE GG P + YLFLGDYVDRG S+E + L A KI YP
Sbjct: 82 DAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYP 141
Query: 116 ENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGG 175
+ FLLRGNHEC + + F ECK +++ +++ + F+CLP+AA+++++ C HGG
Sbjct: 142 KTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGG 201
Query: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGEND-------RGVSFTFG 228
LSP++ +++ IR++ R + P G +CD+LWSDP +D + RG S+ +
Sbjct: 202 LSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYS 261
Query: 229 AEVVAKFLHKHDFDLICRAHQ 249
V +FL ++ I RAH+
Sbjct: 262 YPAVCEFLQHNNLLSILRAHE 282
Score = 87.2 bits (216), Expect = 6e-20
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 1 VVEEGYEFFAKRQ------LVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI 46
+ GY + K Q L+T+FSAPNY ++N A++ + +M Q
Sbjct: 283 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQF 334
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 383 bits (986), Expect = e-135
Identities = 86/189 (45%), Positives = 122/189 (64%), Gaps = 3/189 (1%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GD HGQ+YDLL +FE G P +N Y+F GD+VDRG S+E I L +K+ YP++F LL
Sbjct: 66 GDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLL 125
Query: 122 RGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGL-SPDL 180
RGNHE ++N+IYGF E K ++ ++++ F+E F LP+A ++ K+ HGGL S D
Sbjct: 126 RGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDG 185
Query: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHD 240
+++ IR+I R PD G +CDLLWSDP G + RGVS FG +V FL +++
Sbjct: 186 VTLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFLEENN 244
Query: 241 FDLICRAHQ 249
D I R+H+
Sbjct: 245 LDYIIRSHE 253
Score = 85.7 bits (213), Expect = 7e-20
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVD-ETLMCSFQILK 48
V EGYE + VT+FSAPNYC + N + + + L F
Sbjct: 254 VKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFT 302
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 378 bits (973), Expect = e-131
Identities = 86/189 (45%), Positives = 122/189 (64%), Gaps = 3/189 (1%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GD HGQ+YDLL +FE G P +N Y+F GD+VDRG S+E I L +K+ YP++F LL
Sbjct: 219 GDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLL 278
Query: 122 RGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGL-SPDL 180
RGNHE ++N+IYGF E K ++ ++++ F+E F LP+A ++ K+ HGGL S D
Sbjct: 279 RGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDG 338
Query: 181 QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKHD 240
+++ IR+I R PD G +CDLLWSDP G + RGVS FG +V FL +++
Sbjct: 339 VTLDDIRKIERNRQPPDSGPMCDLLWSDPQ-PQNGRSISKRGVSCQFGPDVTKAFLEENN 397
Query: 241 FDLICRAHQ 249
D I R+H+
Sbjct: 398 LDYIIRSHE 406
Score = 85.9 bits (213), Expect = 1e-19
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVD-ETLMCSFQILK 48
V EGYE + VT+FSAPNYC + N + + + L F
Sbjct: 407 VKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFT 455
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 99.1 bits (246), Expect = 1e-24
Identities = 44/214 (20%), Positives = 71/214 (33%), Gaps = 32/214 (14%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISN--------YLFLGDYVDRGKQSLETICLLLAYKIKY 114
D+HGQY LL L + + GD DRG Q E + + +
Sbjct: 77 SDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQA 136
Query: 115 PE---NFFLLRGNHECASI-------NRIYGFYDECKRRFNIKLWKTFTECFNCLPV--A 162
+ LL GNHE + ++ Y R KL+ TE L
Sbjct: 137 RDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNT 196
Query: 163 AIVDEKIFCCHGGLSPDL----QSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGE 218
I + HGG+S + ++++ + R + L +D + + +G
Sbjct: 197 IIKINDVLYMHGGISSEWISRELTLDKANALYR----ANVDASKKSLKADDLLNFLFFGN 252
Query: 219 N---DRGVSF-TFGAEVVAKFLHKHDFDLICRAH 248
RG TF + L + + I H
Sbjct: 253 GPTWYRGYFSETFTEAELDTILQHFNVNHIVVGH 286
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 70.9 bits (174), Expect = 7e-15
Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 34/183 (18%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GDIHG L L F S+ L +GD V++G S + LL + +
Sbjct: 25 GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAYSV 78
Query: 122 RGNHECASINRIYGFYDECKRRFNIKLWKTFTEC--------------FNCLPVAAIVDE 167
GNH+ ++ + ++ +K + + LP +
Sbjct: 79 LGNHD----AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPA 134
Query: 168 -KIFCCHGGLSP----DLQSMEQ---IRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGEN 219
+ H GL P D Q ++ +R ++ G+ + + W
Sbjct: 135 HNVMVAHAGLHPQRPVDRQYEDEVTTMRNLIEKEQEATGGVTLT-ATEETNDGGKPWASM 193
Query: 220 DRG 222
RG
Sbjct: 194 WRG 196
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 64.1 bits (156), Expect = 1e-12
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 24/136 (17%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GD+HG Y +L+ + GF + L +GD VDRG +++E + L+ F +
Sbjct: 19 GDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFP------WFRAV 72
Query: 122 RGNHECASINRIYGF----------------YDECKRRFNIKLWKTFTECFNCLPVAAIV 165
RGNHE I+ + D K L E + +
Sbjct: 73 RGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIEL-VSK 131
Query: 166 DEKIFCCHGGLSPDLQ 181
D+K CH D
Sbjct: 132 DKKYVICHADYPFDEY 147
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 64.0 bits (155), Expect = 3e-12
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 11/168 (6%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLL 121
GD+HG Y +L+ L F P + L GD V RG SL+ + + + ++ L+
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLV 62
Query: 122 RGNHECASINRIYGFYDECKRR-----FNIKLWKTFTECFNCLPVAAIVD-EKIFCCHGG 175
GNH+ + G + P+ I + +K+ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGV 223
++P V L + W RG+
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGL 170
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 48.2 bits (114), Expect = 6e-07
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 13/123 (10%)
Query: 63 GDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 122
D+H L + G + + LGD V G + E + L+ +
Sbjct: 10 SDVHANLVALEAVLSDAG--RVDDIWSLGDIVGYGPRPRECVELVRVLAPNIS-----VI 62
Query: 123 GNHECASINRIYGF-YDECKRRFNIKLWKTFTE----CFNCLPVAAIVDEKIFCCHGGLS 177
GNH+ A I R+ ++ R + LP ++D HG
Sbjct: 63 GNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPN-RMIDGDWTVVHGSPR 121
Query: 178 PDL 180
+
Sbjct: 122 HPI 124
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 44.3 bits (104), Expect = 1e-05
Identities = 23/147 (15%), Positives = 39/147 (26%), Gaps = 22/147 (14%)
Query: 60 LVPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
+ DIHG L + + Y LGD + G + LL I
Sbjct: 15 ALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPIT-----A 69
Query: 120 LLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIV-------------- 165
+ GN E + + + R L + + + I
Sbjct: 70 RVLGNWEDS-LWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFG 128
Query: 166 DEKIFCCHGGLSPDLQSMEQIRRIMRP 192
D + H PD ++ +
Sbjct: 129 DLTVGISHH--LPDKNWGRELIHTGKQ 153
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 42.9 bits (100), Expect = 3e-05
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 63 GDIHGQYYDLLRLFE-----YGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 117
+I G L I Y LG+ V E I ++ K EN
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--EN 65
Query: 118 FFLLRGNHECASINRIYGFYDE 139
++RG ++ D
Sbjct: 66 VKIIRGKYDQIIAMSDPHATDP 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 5e-04
Identities = 52/286 (18%), Positives = 84/286 (29%), Gaps = 101/286 (35%)
Query: 8 FFAKRQLVTLFSA--PNYCGEFDNAGAMMSVDETLMCSFQILKTKYEQGLFSSPLVPGDI 65
FF QL F+ P F + E L+ F L + S LV
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKF--LG-------YVSSLVEPSK 76
Query: 66 HGQYYDLLRL----FEYGGFPPISNYLFLGD--------YVDRGKQSLETICLLLAY--- 110
GQ+ +L L FE + YL D + ++T L+ Y
Sbjct: 77 VGQFDQVLNLCLTEFE-------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 111 ------KIKYPENFFLLR----GNHECASINRIYG-------FYDECKRRFNIKLWKT-- 151
N L R GN A + I+G +++E + L++T
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDYFEELR-----DLYQTYH 181
Query: 152 ------FTECFNCL--PVAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCD 203
L + +D + G L +E + P++ PD+ L
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQG-----LNILEWLEN---PSNTPDKDYLL- 232
Query: 204 LLWSDPDKDTMGWGENDRGVSFTF-GAEVVAKFLHKHDFDLICRAH 248
S P +S G V + H + + +
Sbjct: 233 ---SIP-------------ISCPLIG---VIQLAH---YVVTAKLL 256
Score = 31.6 bits (71), Expect = 0.26
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 38/119 (31%)
Query: 25 GEFD----NAGAMMSVDETLMCSFQILKTKYEQGLFSSPLVPGDIHGQ-YYDLLRL---- 75
GE+ A M S++ + +++ + G+ VP D G+ Y ++ +
Sbjct: 1765 GEYAALASLADVM-SIESLV----EVVFYR---GMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 76 ------------------FEYGGFPPISNYLFLGD-YVDRG-KQSLETICLLLAY-KIK 113
G I NY YV G ++L+T+ +L + K++
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Score = 30.8 bits (69), Expect = 0.56
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 51/191 (26%)
Query: 36 VDETLMCSFQILKTKYEQGLFSSPLVPGDIHGQYYDLLR-LFEYGGFPPISNYLFLGDYV 94
V + + S + L L + L + Q ++L L P DY+
Sbjct: 184 VGDLIKFSAETL-----SELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-------DYL 231
Query: 95 DRGKQSLETICL--LLAYKI------KYPENFFLLRGNHECASINRIYG----------- 135
S I + L Y + P ++ + G
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR----SYLKGATGHSQGLVTAVAIAETD 287
Query: 136 ----FYDECKRRFNIKLWKTFTECFNCLPV----AAIVDEKIFCCHGGLSP-----DLQS 182
F+ ++ + + C+ P +I+++ + G SP +L +
Sbjct: 288 SWESFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-T 345
Query: 183 MEQIRRIMRPT 193
EQ++ + T
Sbjct: 346 QEQVQDYVNKT 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.001
Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 83/189 (43%)
Query: 68 QYYDLLRLFEYGGF--PPISNYLFLGDYVDRGKQSLETICLLLAY---KIKYPENFFLLR 122
+Y++ + F+ P + Y + + + + I++PE L R
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFY--SH--------------IGHHLKNIEHPERMTLFR 494
Query: 123 GNHECASINRIY---GFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPD 179
++ F ++ K R + W G +
Sbjct: 495 ---------MVFLDFRFLEQ-KIRHDSTAW---------------------NASGSILNT 523
Query: 180 LQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTFGAEVVAKFLHKH 239
LQ ++ + + D + L+ +L FL K
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAIL----------------------------DFLPKI 555
Query: 240 DFDLICRAH 248
+ +LIC +
Sbjct: 556 EENLICSKY 564
Score = 35.6 bits (81), Expect = 0.013
Identities = 40/299 (13%), Positives = 83/299 (27%), Gaps = 77/299 (25%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKTKYEQGLFSSPL 60
++ +L + V+E L +++ L + + P
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSPI-KTEQRQPS 106
Query: 61 VPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 120
+ ++ + D L Y + Y V R + L+ LL + P L
Sbjct: 107 MMTRMYIEQRDRL----YNDNQVFAKY-----NVSRLQPYLKLRQALLELR---PAKNVL 154
Query: 121 LRGNHEC------ASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
+ G + Y +CK F I W C P + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKV--QCKMDFKI-FWLNLKNC--NSPETVLEMLQKLLYQ- 208
Query: 175 GLSPDLQSM---------------EQIRRIMRPT----------DVPDQGLL------CD 203
+ P+ S ++RR+++ +V + C
Sbjct: 209 -IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 204 LLWSDPDK---DTMGWGE------NDRGVSFTF--GAEVVAKFLHKHDFDL---ICRAH 248
+L + K D + + ++ T ++ K+L DL + +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Score = 29.1 bits (64), Expect = 1.9
Identities = 38/276 (13%), Positives = 68/276 (24%), Gaps = 88/276 (31%)
Query: 25 GEFDNAGAMMSVDETLMCSFQILKTKYEQGLFSSPLVPGDIHGQYYDLLRLFEYGGFPPI 84
++ ++ + + L + + S + IH +L RL + +
Sbjct: 190 KNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-- 244
Query: 85 SNYLFLGDYVDRGKQSLETI------CLLLAYKI----KYPENFFLLRGNHEC--ASINR 132
N L + V Q+ + C KI ++ + L + +
Sbjct: 245 -NCLLVLLNV----QNAKAWNAFNLSC-----KILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 133 IYGFY-DECKRRFNIKLWKTFTECFNCLPVAAI--------------------------- 164
DE K L + LP +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 165 ----VDEKIFCCHGGLSP-DLQSMEQIRRIMRP-TDVPDQGLLCDLLWSDPDKDTMGWGE 218
+ I L P + + M + P +P LL L+W D K +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLS-LIWFDVIKSDV---- 404
Query: 219 NDRGVSFTFGAEVVAKFLH------KHDFDLICRAH 248
VV LH K +
Sbjct: 405 -----------MVVVNKLHKYSLVEKQPKESTISIP 429
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 36.6 bits (84), Expect = 0.004
Identities = 21/201 (10%), Positives = 45/201 (22%), Gaps = 33/201 (16%)
Query: 60 LVPGDIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFF 119
L + G L + + +G+ + + +S + +
Sbjct: 9 LATSNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHLPTA 67
Query: 120 LLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHGGLSPD 179
+ G + + + ++ + GG D
Sbjct: 68 YVPGPQDAPIWEYLREAANVELVHPEMRNVHET--------FTFWRGPYLVAGVGGEIAD 119
Query: 180 LQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGENDRGVSFTF------------ 227
+ + L W + W D F F
Sbjct: 120 ------------EGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQ 167
Query: 228 GAEVVAKFLHKHDFDLICRAH 248
G+ VA + H+ L+ A
Sbjct: 168 GSHEVAHLIKTHNPLLVLVAG 188
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 32.4 bits (74), Expect = 0.085
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 64 DIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICL----LLAYKIKYPENFF 119
DIHG R+ E + LGD ++ G ++ ++ +
Sbjct: 33 DIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVI 92
Query: 120 LLRGNHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
+RGN + D+ F I + +++F HG
Sbjct: 93 AVRGNCD--------SEVDQMLLHFPITAPWQQVL---------LEKQRLFLTHG 130
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel,
structural genomics, joint for structural genomics,
JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Length = 301
Score = 29.2 bits (65), Expect = 1.2
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 88 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIK 147
+ D +++ ++ E C L ++ + + + K F K
Sbjct: 79 YIIRDGIEKASEAFEKHCQYLK---AINAPVAVVSEQTYTIQRSDTANIFKD-KPYFTDK 134
Query: 148 LWKTFTECFNCLPVAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWS 207
W + N A H + +Q+ E+ R+M TD GLL D
Sbjct: 135 EWDEVCKGLNHYGEIAAKYGLKVAYHHHMGTGIQTKEETDRLMANTDPKLVGLLYDTGHI 194
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease,
structural genomics, BSGC struc funded by NIH; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB:
1s3m_A 1s3n_A 2ahd_A
Length = 190
Score = 28.5 bits (64), Expect = 1.5
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 20/111 (18%)
Query: 64 DIHGQYYDLLRLFEYGGFPPISNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRG 123
D H ++ + E + + GD+V SL I G
Sbjct: 33 DTHDHLPNIRKAIEIFNDENVETVIHCGDFV-----SLFVIKEFENLNAN----IIATYG 83
Query: 124 NHECASINRIYGFYDECKRRFNIKLWKTFTECFNCLPVAAIVDEKIFCCHG 174
N++ G + K + + F + + D K F HG
Sbjct: 84 NND--------GERCKLKEWLKDINEENIIDDFISVEID---DLKFFITHG 123
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 28.6 bits (63), Expect = 1.8
Identities = 5/46 (10%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 173 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLC----DLLWSDPDKDTM 214
GG +P +++ + + + ++ + +++D + M
Sbjct: 33 VGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIM 78
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 28.4 bits (64), Expect = 1.9
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 178 PDLQSM------EQIRRIMRPTDVPDQGLLCDLLWSDPDKDTMGWGEN 219
D ++M +++I +P + D+ ++ G+G +
Sbjct: 58 SDGENMNFADYMAVVKKITSAVSIP---VSVDV-------ES-GYGLS 94
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural
genomics, center for structural genomics, JCSG, protein
structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Length = 495
Score = 28.4 bits (62), Expect = 2.9
Identities = 6/71 (8%), Positives = 20/71 (28%)
Query: 1 VVEEGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKTKYEQGLFSSPL 60
+ ++ ++ + D GA ++ + + + + G
Sbjct: 76 IEQKVFDNIVDEFVQAARMQDFDAICLDLHGATLAEHTLDTEGYLLSRLREVVGNDIMIS 135
Query: 61 VPGDIHGQYYD 71
+ D+H
Sbjct: 136 LALDLHAYLTP 146
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6
sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB:
3usz_A 3f93_A 3f94_A 3ut0_A
Length = 822
Score = 27.7 bits (62), Expect = 4.9
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 46 ILKTKYEQGLFSSPLVPGDIHGQYYDLLR 74
L+ K G+F+ Q+ L
Sbjct: 354 FLRAKIRWGVFTKSKPSARPESQHPQWLG 382
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.144 0.466
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,071,848
Number of extensions: 240410
Number of successful extensions: 653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 44
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.4 bits)