Query psy18111
Match_columns 186
No_of_seqs 111 out of 1193
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:49:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-61 2.3E-66 457.8 15.9 177 9-186 64-241 (1463)
2 cd01385 MYSc_type_IX Myosin mo 100.0 3.2E-60 6.9E-65 437.0 19.1 181 5-186 1-182 (692)
3 PTZ00014 myosin-A; Provisional 100.0 3.1E-60 6.8E-65 441.9 19.2 175 10-186 95-270 (821)
4 cd01380 MYSc_type_V Myosin mot 100.0 3.5E-60 7.6E-65 436.9 18.1 174 12-186 1-177 (691)
5 cd01377 MYSc_type_II Myosin mo 100.0 6E-60 1.3E-64 435.5 18.5 176 10-186 4-186 (693)
6 cd01381 MYSc_type_VII Myosin m 100.0 1.1E-59 2.3E-64 432.3 17.5 171 12-186 1-171 (671)
7 cd01378 MYSc_type_I Myosin mot 100.0 1.6E-59 3.5E-64 431.5 18.3 174 12-186 1-174 (674)
8 cd01384 MYSc_type_XI Myosin mo 100.0 5.9E-59 1.3E-63 427.3 18.2 175 11-186 1-177 (674)
9 cd01382 MYSc_type_VI Myosin mo 100.0 1.1E-58 2.3E-63 428.3 18.9 175 8-186 1-176 (717)
10 cd01386 MYSc_type_XVIII Myosin 100.0 1.5E-58 3.3E-63 428.8 18.9 172 13-186 2-173 (767)
11 cd01387 MYSc_type_XV Myosin mo 100.0 4.4E-58 9.6E-63 421.9 17.7 171 12-186 2-172 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 9.5E-58 2.1E-62 419.5 18.6 173 7-186 4-176 (677)
13 smart00242 MYSc Myosin. Large 100.0 1.2E-57 2.5E-62 420.0 18.7 178 8-186 3-180 (677)
14 cd00124 MYSc Myosin motor doma 100.0 2.7E-57 5.9E-62 418.0 18.9 172 12-186 1-172 (679)
15 cd01379 MYSc_type_III Myosin m 100.0 3.3E-57 7.1E-62 414.5 18.2 171 13-186 2-172 (653)
16 KOG0164|consensus 100.0 1.2E-57 2.5E-62 406.8 14.2 182 4-186 1-184 (1001)
17 KOG0161|consensus 100.0 1.7E-57 3.7E-62 443.7 13.7 174 12-186 83-260 (1930)
18 PF00063 Myosin_head: Myosin h 100.0 5.7E-57 1.2E-61 417.1 15.0 173 13-186 1-175 (689)
19 KOG0162|consensus 100.0 2.3E-55 5.1E-60 392.6 14.2 177 9-186 16-192 (1106)
20 KOG0163|consensus 100.0 2.2E-53 4.8E-58 380.9 10.5 178 5-186 51-229 (1259)
21 KOG0160|consensus 100.0 1.7E-47 3.6E-52 353.0 10.7 173 11-186 8-181 (862)
22 KOG4229|consensus 100.0 2.5E-39 5.5E-44 304.8 8.8 176 8-186 58-234 (1062)
23 cd01363 Motor_domain Myosin an 98.9 3.4E-09 7.3E-14 83.8 5.5 88 80-176 8-96 (186)
24 PF13207 AAA_17: AAA domain; P 97.1 0.00049 1.1E-08 49.7 3.0 24 99-122 1-24 (121)
25 KOG0925|consensus 96.9 0.0011 2.3E-08 59.7 4.3 62 51-120 24-86 (699)
26 PF13401 AAA_22: AAA domain; P 96.7 0.0014 2.9E-08 47.8 2.8 28 95-122 2-29 (131)
27 cd00009 AAA The AAA+ (ATPases 96.7 0.0031 6.7E-08 45.5 4.7 29 94-122 16-44 (151)
28 PF13238 AAA_18: AAA domain; P 96.7 0.0015 3.2E-08 47.1 2.8 22 100-121 1-22 (129)
29 TIGR02322 phosphon_PhnN phosph 96.6 0.002 4.4E-08 49.9 3.1 25 98-122 2-26 (179)
30 cd02019 NK Nucleoside/nucleoti 96.5 0.0028 6E-08 41.9 3.0 22 100-121 2-23 (69)
31 COG0444 DppD ABC-type dipeptid 96.5 0.0021 4.6E-08 54.8 2.8 28 95-122 29-56 (316)
32 PRK06762 hypothetical protein; 96.4 0.0031 6.7E-08 48.2 3.4 25 97-121 2-26 (166)
33 PRK05480 uridine/cytidine kina 96.4 0.0033 7.1E-08 50.1 3.6 27 95-121 4-30 (209)
34 smart00382 AAA ATPases associa 96.4 0.0026 5.7E-08 45.3 2.8 26 97-122 2-27 (148)
35 PRK07261 topology modulation p 96.4 0.0029 6.4E-08 49.2 3.0 25 98-122 1-25 (171)
36 PF13191 AAA_16: AAA ATPase do 96.4 0.0023 5E-08 49.1 2.5 30 93-122 20-49 (185)
37 PRK00300 gmk guanylate kinase; 96.4 0.003 6.5E-08 49.9 3.1 27 95-121 3-29 (205)
38 PRK05541 adenylylsulfate kinas 96.3 0.003 6.6E-08 48.9 2.8 28 95-122 5-32 (176)
39 PF00004 AAA: ATPase family as 96.3 0.0034 7.3E-08 45.4 2.9 23 100-122 1-23 (132)
40 PRK08118 topology modulation p 96.3 0.0037 7.9E-08 48.5 3.1 25 98-122 2-26 (167)
41 TIGR00235 udk uridine kinase. 96.3 0.0041 8.8E-08 49.6 3.5 28 95-122 4-31 (207)
42 COG4608 AppF ABC-type oligopep 96.3 0.0027 5.8E-08 53.1 2.4 32 95-127 37-68 (268)
43 PRK06696 uridine kinase; Valid 96.3 0.0071 1.5E-07 48.9 4.9 29 94-122 19-47 (223)
44 PRK00131 aroK shikimate kinase 96.3 0.0044 9.5E-08 47.2 3.3 27 96-122 3-29 (175)
45 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0045 9.7E-08 44.9 3.0 24 95-118 13-36 (107)
46 PF01583 APS_kinase: Adenylyls 96.2 0.0057 1.2E-07 47.3 3.6 26 97-122 2-27 (156)
47 PF00485 PRK: Phosphoribulokin 96.2 0.0039 8.4E-08 49.2 2.8 23 100-122 2-24 (194)
48 cd00227 CPT Chloramphenicol (C 96.2 0.0051 1.1E-07 47.7 3.4 26 97-122 2-27 (175)
49 TIGR00150 HI0065_YjeE ATPase, 96.2 0.012 2.5E-07 44.4 5.1 28 95-122 20-47 (133)
50 cd02023 UMPK Uridine monophosp 96.1 0.0049 1.1E-07 48.6 2.9 22 100-121 2-23 (198)
51 COG1124 DppF ABC-type dipeptid 96.1 0.0042 9E-08 51.3 2.5 32 95-127 31-62 (252)
52 PRK00889 adenylylsulfate kinas 96.1 0.0071 1.5E-07 46.7 3.7 28 95-122 2-29 (175)
53 PRK08233 hypothetical protein; 96.1 0.0057 1.2E-07 47.1 3.1 26 97-122 3-28 (182)
54 TIGR03420 DnaA_homol_Hda DnaA 96.0 0.014 3E-07 46.6 5.4 35 88-122 29-63 (226)
55 cd01131 PilT Pilus retraction 96.0 0.0062 1.4E-07 48.4 3.2 24 99-122 3-26 (198)
56 cd02020 CMPK Cytidine monophos 96.0 0.0065 1.4E-07 44.9 2.9 23 100-122 2-24 (147)
57 TIGR03015 pepcterm_ATPase puta 96.0 0.012 2.7E-07 48.2 4.8 28 95-122 41-68 (269)
58 PRK06547 hypothetical protein; 95.9 0.015 3.2E-07 45.5 5.0 30 93-122 11-40 (172)
59 PTZ00301 uridine kinase; Provi 95.9 0.0065 1.4E-07 49.1 3.0 23 99-121 5-27 (210)
60 PRK10078 ribose 1,5-bisphospho 95.9 0.0053 1.2E-07 48.1 2.5 26 97-122 2-27 (186)
61 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0066 1.4E-07 46.2 2.7 24 99-122 2-25 (171)
62 PF13671 AAA_33: AAA domain; P 95.9 0.0057 1.2E-07 45.2 2.3 23 100-122 2-24 (143)
63 PRK09270 nucleoside triphospha 95.9 0.018 4E-07 46.6 5.5 29 94-122 30-58 (229)
64 TIGR03263 guanyl_kin guanylate 95.9 0.0055 1.2E-07 47.3 2.3 25 98-122 2-26 (180)
65 cd01130 VirB11-like_ATPase Typ 95.9 0.007 1.5E-07 47.5 2.9 27 96-122 24-50 (186)
66 cd01918 HprK_C HprK/P, the bif 95.8 0.0088 1.9E-07 45.9 3.3 25 96-120 13-37 (149)
67 PRK06217 hypothetical protein; 95.8 0.008 1.7E-07 47.0 3.0 25 98-122 2-26 (183)
68 TIGR01313 therm_gnt_kin carboh 95.8 0.0058 1.3E-07 46.6 2.1 23 100-122 1-23 (163)
69 PRK03846 adenylylsulfate kinas 95.8 0.011 2.3E-07 46.9 3.7 28 95-122 22-49 (198)
70 PRK08084 DNA replication initi 95.8 0.022 4.7E-07 46.5 5.5 37 86-122 34-70 (235)
71 PRK13833 conjugal transfer pro 95.8 0.014 3E-07 50.3 4.5 33 88-122 137-169 (323)
72 PF03266 NTPase_1: NTPase; In 95.8 0.0088 1.9E-07 46.6 3.1 23 100-122 2-24 (168)
73 PF05729 NACHT: NACHT domain 95.8 0.01 2.2E-07 44.4 3.3 24 99-122 2-25 (166)
74 cd02028 UMPK_like Uridine mono 95.7 0.0088 1.9E-07 46.9 3.0 23 100-122 2-24 (179)
75 cd02025 PanK Pantothenate kina 95.7 0.0083 1.8E-07 48.6 2.9 23 100-122 2-24 (220)
76 cd01129 PulE-GspE PulE/GspE Th 95.7 0.015 3.3E-07 48.4 4.6 25 98-122 81-105 (264)
77 cd00071 GMPK Guanosine monopho 95.7 0.0076 1.6E-07 45.2 2.3 23 100-122 2-24 (137)
78 cd02027 APSK Adenosine 5'-phos 95.7 0.01 2.2E-07 45.0 3.0 23 100-122 2-24 (149)
79 TIGR00554 panK_bact pantothena 95.7 0.025 5.5E-07 47.9 5.6 28 95-122 60-87 (290)
80 PF07724 AAA_2: AAA domain (Cd 95.6 0.012 2.7E-07 45.9 3.4 24 99-122 5-28 (171)
81 COG0529 CysC Adenylylsulfate k 95.6 0.021 4.5E-07 45.2 4.5 32 91-122 17-48 (197)
82 COG0194 Gmk Guanylate kinase [ 95.6 0.012 2.6E-07 46.7 3.2 26 96-121 3-28 (191)
83 PRK14738 gmk guanylate kinase; 95.6 0.012 2.5E-07 47.2 3.1 26 95-120 11-36 (206)
84 PRK12402 replication factor C 95.5 0.027 5.8E-07 47.7 5.4 34 89-122 28-61 (337)
85 PF03215 Rad17: Rad17 cell cyc 95.5 0.016 3.5E-07 52.9 4.3 57 66-122 11-70 (519)
86 PF03193 DUF258: Protein of un 95.5 0.016 3.5E-07 45.0 3.7 27 95-121 33-59 (161)
87 PRK11308 dppF dipeptide transp 95.5 0.0096 2.1E-07 51.1 2.4 32 95-127 39-70 (327)
88 PRK14737 gmk guanylate kinase; 95.5 0.015 3.2E-07 46.0 3.3 27 96-122 3-29 (186)
89 PRK09825 idnK D-gluconate kina 95.4 0.015 3.2E-07 45.6 3.3 26 97-122 3-28 (176)
90 COG1125 OpuBA ABC-type proline 95.4 0.012 2.5E-07 49.3 2.7 31 96-127 26-56 (309)
91 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.8E-07 45.3 3.0 25 98-122 4-28 (188)
92 TIGR02868 CydC thiol reductant 95.4 0.0095 2.1E-07 54.0 2.4 32 95-127 359-390 (529)
93 PRK05057 aroK shikimate kinase 95.4 0.015 3.2E-07 45.2 3.2 27 96-122 3-29 (172)
94 PRK14527 adenylate kinase; Pro 95.4 0.015 3.2E-07 45.7 3.1 28 95-122 4-31 (191)
95 COG4172 ABC-type uncharacteriz 95.4 0.011 2.5E-07 52.3 2.6 30 93-122 309-338 (534)
96 PRK15177 Vi polysaccharide exp 95.4 0.012 2.6E-07 47.2 2.6 28 95-122 11-38 (213)
97 PRK04040 adenylate kinase; Pro 95.4 0.016 3.5E-07 45.9 3.2 25 97-121 2-26 (188)
98 cd03258 ABC_MetN_methionine_tr 95.4 0.012 2.5E-07 47.6 2.5 32 95-127 29-60 (233)
99 TIGR02928 orc1/cdc6 family rep 95.3 0.023 5.1E-07 48.7 4.5 34 89-122 32-65 (365)
100 PF00910 RNA_helicase: RNA hel 95.3 0.014 3E-07 41.8 2.6 24 100-123 1-24 (107)
101 cd02021 GntK Gluconate kinase 95.3 0.013 2.8E-07 43.9 2.6 22 100-121 2-23 (150)
102 PRK15093 antimicrobial peptide 95.3 0.012 2.5E-07 50.6 2.5 28 95-122 31-58 (330)
103 PF12846 AAA_10: AAA-like doma 95.3 0.016 3.6E-07 47.6 3.4 26 97-122 1-26 (304)
104 cd02024 NRK1 Nicotinamide ribo 95.3 0.013 2.9E-07 46.5 2.7 22 100-121 2-23 (187)
105 PF13245 AAA_19: Part of AAA d 95.3 0.029 6.4E-07 37.9 4.0 27 96-122 9-35 (76)
106 PF00437 T2SE: Type II/IV secr 95.3 0.021 4.5E-07 47.2 4.0 28 95-122 125-152 (270)
107 cd03260 ABC_PstB_phosphate_tra 95.3 0.016 3.4E-07 46.6 3.1 27 95-121 24-50 (227)
108 PLN03025 replication factor C 95.3 0.028 6E-07 47.9 4.8 36 87-122 24-59 (319)
109 PRK10751 molybdopterin-guanine 95.3 0.015 3.3E-07 45.7 2.9 26 97-122 6-31 (173)
110 TIGR02673 FtsE cell division A 95.3 0.012 2.6E-07 46.9 2.3 28 95-122 26-53 (214)
111 PF02367 UPF0079: Uncharacteri 95.3 0.039 8.3E-07 41.0 4.9 28 95-122 13-40 (123)
112 cd00464 SK Shikimate kinase (S 95.3 0.015 3.2E-07 43.4 2.7 24 99-122 1-24 (154)
113 TIGR01420 pilT_fam pilus retra 95.3 0.019 4E-07 49.6 3.6 27 96-122 121-147 (343)
114 cd03292 ABC_FtsE_transporter F 95.3 0.012 2.5E-07 46.8 2.3 28 95-122 25-52 (214)
115 COG1123 ATPase components of v 95.3 0.011 2.5E-07 53.9 2.4 28 95-122 315-342 (539)
116 PRK15079 oligopeptide ABC tran 95.3 0.012 2.5E-07 50.7 2.3 32 95-127 45-76 (331)
117 PRK04182 cytidylate kinase; Pr 95.3 0.016 3.5E-07 44.4 2.9 24 99-122 2-25 (180)
118 cd03225 ABC_cobalt_CbiO_domain 95.3 0.014 2.9E-07 46.4 2.6 28 95-122 25-52 (211)
119 cd03259 ABC_Carb_Solutes_like 95.2 0.013 2.8E-07 46.7 2.4 28 95-122 24-51 (213)
120 PF00005 ABC_tran: ABC transpo 95.2 0.015 3.3E-07 42.7 2.6 28 95-122 9-36 (137)
121 PRK13900 type IV secretion sys 95.2 0.025 5.4E-07 48.8 4.3 26 97-122 160-185 (332)
122 PRK08903 DnaA regulatory inact 95.2 0.041 8.9E-07 44.2 5.3 28 95-122 40-67 (227)
123 PHA02544 44 clamp loader, smal 95.2 0.029 6.3E-07 47.3 4.6 28 95-122 41-68 (316)
124 cd03293 ABC_NrtD_SsuB_transpor 95.2 0.012 2.5E-07 47.2 2.1 28 95-122 28-55 (220)
125 PRK09473 oppD oligopeptide tra 95.2 0.012 2.6E-07 50.6 2.3 28 95-122 40-67 (330)
126 PF07728 AAA_5: AAA domain (dy 95.2 0.017 3.7E-07 42.7 2.8 23 100-122 2-24 (139)
127 PLN02165 adenylate isopentenyl 95.2 0.016 3.4E-07 50.1 2.9 32 91-122 37-68 (334)
128 PRK14531 adenylate kinase; Pro 95.2 0.019 4.1E-07 44.9 3.2 25 98-122 3-27 (183)
129 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.013 2.9E-07 46.7 2.4 28 95-122 28-55 (218)
130 TIGR01166 cbiO cobalt transpor 95.2 0.018 3.9E-07 45.1 3.1 28 95-122 16-43 (190)
131 TIGR00960 3a0501s02 Type II (G 95.2 0.013 2.8E-07 46.8 2.3 28 95-122 27-54 (216)
132 PRK11022 dppD dipeptide transp 95.2 0.013 2.8E-07 50.2 2.4 28 95-122 31-58 (326)
133 PRK14961 DNA polymerase III su 95.2 0.053 1.1E-06 47.2 6.2 54 65-122 7-63 (363)
134 cd01120 RecA-like_NTPases RecA 95.2 0.019 4.1E-07 42.5 3.1 23 100-122 2-24 (165)
135 PRK03839 putative kinase; Prov 95.2 0.018 3.8E-07 44.7 3.0 24 99-122 2-25 (180)
136 PHA02530 pseT polynucleotide k 95.2 0.017 3.7E-07 48.4 3.0 25 97-121 2-26 (300)
137 PRK11176 lipid transporter ATP 95.2 0.016 3.4E-07 53.1 3.0 32 95-127 367-398 (582)
138 TIGR02524 dot_icm_DotB Dot/Icm 95.2 0.023 4.9E-07 49.6 3.8 27 96-122 133-159 (358)
139 COG0572 Udk Uridine kinase [Nu 95.1 0.018 3.9E-07 46.9 2.9 24 99-122 10-33 (218)
140 TIGR02782 TrbB_P P-type conjug 95.1 0.019 4.2E-07 48.7 3.2 26 97-122 132-157 (299)
141 TIGR02315 ABC_phnC phosphonate 95.1 0.015 3.3E-07 47.1 2.5 28 95-122 26-53 (243)
142 COG0563 Adk Adenylate kinase a 95.1 0.019 4.1E-07 45.2 2.9 24 99-122 2-25 (178)
143 PRK06893 DNA replication initi 95.1 0.05 1.1E-06 44.2 5.4 30 93-122 35-64 (229)
144 PF03668 ATP_bind_2: P-loop AT 95.0 0.017 3.8E-07 48.7 2.7 21 98-118 2-22 (284)
145 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.02 4.3E-07 44.3 2.8 23 100-122 2-24 (183)
146 cd03224 ABC_TM1139_LivF_branch 95.0 0.016 3.4E-07 46.3 2.3 28 95-122 24-51 (222)
147 PRK12377 putative replication 95.0 0.055 1.2E-06 44.9 5.5 42 79-122 85-126 (248)
148 TIGR03574 selen_PSTK L-seryl-t 95.0 0.02 4.4E-07 46.9 3.0 23 100-122 2-24 (249)
149 COG1126 GlnQ ABC-type polar am 95.0 0.021 4.5E-07 46.6 2.9 25 95-119 26-50 (240)
150 PRK07667 uridine kinase; Provi 95.0 0.034 7.4E-07 43.9 4.2 24 99-122 19-42 (193)
151 cd03256 ABC_PhnC_transporter A 95.0 0.017 3.6E-07 46.8 2.5 28 95-122 25-52 (241)
152 cd03219 ABC_Mj1267_LivG_branch 95.0 0.015 3.2E-07 47.0 2.1 28 95-122 24-51 (236)
153 TIGR03608 L_ocin_972_ABC putat 95.0 0.016 3.5E-07 45.7 2.3 28 95-122 22-49 (206)
154 COG2274 SunT ABC-type bacterio 95.0 0.015 3.3E-07 54.9 2.5 32 95-127 497-528 (709)
155 cd03262 ABC_HisP_GlnQ_permease 95.0 0.018 3.9E-07 45.7 2.5 28 95-122 24-51 (213)
156 cd03229 ABC_Class3 This class 95.0 0.018 3.8E-07 44.8 2.3 28 95-122 24-51 (178)
157 TIGR03410 urea_trans_UrtE urea 95.0 0.017 3.7E-07 46.5 2.3 32 95-127 24-55 (230)
158 cd03296 ABC_CysA_sulfate_impor 94.9 0.017 3.7E-07 46.9 2.3 28 95-122 26-53 (239)
159 cd03268 ABC_BcrA_bacitracin_re 94.9 0.018 3.8E-07 45.7 2.4 28 95-122 24-51 (208)
160 cd03235 ABC_Metallic_Cations A 94.9 0.016 3.4E-07 46.1 2.1 28 95-122 23-50 (213)
161 COG1123 ATPase components of v 94.9 0.017 3.7E-07 52.8 2.4 28 95-122 33-60 (539)
162 PF07693 KAP_NTPase: KAP famil 94.9 0.052 1.1E-06 45.7 5.3 28 95-122 18-45 (325)
163 cd03265 ABC_DrrA DrrA is the A 94.9 0.018 4E-07 46.1 2.4 28 95-122 24-51 (220)
164 TIGR02525 plasmid_TraJ plasmid 94.9 0.022 4.8E-07 49.9 3.0 26 97-122 149-174 (372)
165 TIGR01184 ntrCD nitrate transp 94.9 0.018 4E-07 46.6 2.4 28 95-122 9-36 (230)
166 cd03218 ABC_YhbG The ABC trans 94.9 0.019 4E-07 46.3 2.4 28 95-122 24-51 (232)
167 cd03266 ABC_NatA_sodium_export 94.9 0.019 4.2E-07 45.7 2.5 28 95-122 29-56 (218)
168 cd03223 ABCD_peroxisomal_ALDP 94.9 0.021 4.5E-07 44.0 2.5 28 95-122 25-52 (166)
169 cd03226 ABC_cobalt_CbiO_domain 94.9 0.018 4E-07 45.5 2.3 28 95-122 24-51 (205)
170 PRK00440 rfc replication facto 94.9 0.051 1.1E-06 45.5 5.1 36 87-122 28-63 (319)
171 TIGR03864 PQQ_ABC_ATP ABC tran 94.9 0.018 4E-07 46.6 2.3 28 95-122 25-52 (236)
172 PF03205 MobB: Molybdopterin g 94.9 0.028 6E-07 42.4 3.1 24 99-122 2-25 (140)
173 TIGR00455 apsK adenylylsulfate 94.9 0.045 9.8E-07 42.6 4.4 28 95-122 16-43 (184)
174 PF00625 Guanylate_kin: Guanyl 94.9 0.027 5.8E-07 44.0 3.1 25 98-122 3-27 (183)
175 cd03270 ABC_UvrA_I The excisio 94.8 0.025 5.5E-07 45.8 3.1 24 95-118 19-42 (226)
176 cd03269 ABC_putative_ATPase Th 94.8 0.027 5.8E-07 44.7 3.1 28 95-122 24-51 (210)
177 PRK00411 cdc6 cell division co 94.8 0.043 9.2E-07 47.7 4.5 32 91-122 49-80 (394)
178 COG1102 Cmk Cytidylate kinase 94.8 0.026 5.6E-07 44.1 2.8 24 99-122 2-25 (179)
179 TIGR03238 dnd_assoc_3 dnd syst 94.8 0.034 7.4E-07 50.3 3.9 21 95-115 30-50 (504)
180 PRK13645 cbiO cobalt transport 94.8 0.02 4.3E-07 48.0 2.3 28 95-122 35-62 (289)
181 cd03261 ABC_Org_Solvent_Resist 94.8 0.019 4.2E-07 46.4 2.2 28 95-122 24-51 (235)
182 PRK13539 cytochrome c biogenes 94.7 0.022 4.7E-07 45.3 2.4 28 95-122 26-53 (207)
183 cd03234 ABCG_White The White s 94.7 0.023 4.9E-07 45.8 2.5 28 95-122 31-58 (226)
184 PRK13851 type IV secretion sys 94.7 0.02 4.3E-07 49.7 2.3 27 96-122 161-187 (344)
185 cd03297 ABC_ModC_molybdenum_tr 94.7 0.021 4.5E-07 45.6 2.3 27 95-122 22-48 (214)
186 PRK10584 putative ABC transpor 94.7 0.022 4.8E-07 45.8 2.5 28 95-122 34-61 (228)
187 PRK11124 artP arginine transpo 94.7 0.021 4.5E-07 46.4 2.3 28 95-122 26-53 (242)
188 cd03301 ABC_MalK_N The N-termi 94.7 0.021 4.6E-07 45.3 2.3 28 95-122 24-51 (213)
189 cd03222 ABC_RNaseL_inhibitor T 94.7 0.022 4.8E-07 44.7 2.4 28 95-122 23-50 (177)
190 cd03230 ABC_DR_subfamily_A Thi 94.7 0.021 4.6E-07 44.1 2.2 28 95-122 24-51 (173)
191 PRK00698 tmk thymidylate kinas 94.7 0.036 7.8E-07 43.4 3.6 26 97-122 3-28 (205)
192 PRK10908 cell division protein 94.7 0.02 4.4E-07 45.8 2.2 28 95-122 26-53 (222)
193 TIGR02211 LolD_lipo_ex lipopro 94.7 0.022 4.9E-07 45.5 2.4 28 95-122 29-56 (221)
194 PRK11248 tauB taurine transpor 94.7 0.022 4.8E-07 46.9 2.4 28 95-122 25-52 (255)
195 cd03238 ABC_UvrA The excision 94.7 0.031 6.6E-07 43.9 3.1 24 95-118 19-42 (176)
196 PF00448 SRP54: SRP54-type pro 94.7 0.034 7.3E-07 44.4 3.4 26 97-122 1-26 (196)
197 PRK08727 hypothetical protein; 94.7 0.066 1.4E-06 43.6 5.2 29 94-122 38-66 (233)
198 TIGR02204 MsbA_rel ABC transpo 94.7 0.027 5.8E-07 51.5 3.1 33 94-127 363-395 (576)
199 COG1136 SalX ABC-type antimicr 94.7 0.029 6.3E-07 45.9 3.0 28 95-122 29-56 (226)
200 COG0802 Predicted ATPase or ki 94.6 0.09 2E-06 40.3 5.4 28 95-122 23-50 (149)
201 PRK11629 lolD lipoprotein tran 94.6 0.023 4.9E-07 46.0 2.3 28 95-122 33-60 (233)
202 PRK13541 cytochrome c biogenes 94.6 0.026 5.6E-07 44.5 2.5 28 95-122 24-51 (195)
203 PRK13538 cytochrome c biogenes 94.6 0.024 5.3E-07 44.9 2.4 32 95-127 25-56 (204)
204 PRK09493 glnQ glutamine ABC tr 94.6 0.023 5E-07 46.1 2.3 28 95-122 25-52 (240)
205 PF13555 AAA_29: P-loop contai 94.6 0.044 9.6E-07 35.8 3.2 24 99-122 25-48 (62)
206 cd03237 ABC_RNaseL_inhibitor_d 94.6 0.025 5.3E-07 46.6 2.4 27 96-122 24-50 (246)
207 cd03246 ABCC_Protease_Secretio 94.6 0.033 7.1E-07 43.0 3.0 28 95-122 26-53 (173)
208 cd03294 ABC_Pro_Gly_Bertaine T 94.6 0.024 5.1E-07 47.1 2.3 28 95-122 48-75 (269)
209 cd03263 ABC_subfamily_A The AB 94.6 0.025 5.5E-07 45.1 2.4 28 95-122 26-53 (220)
210 TIGR02324 CP_lyasePhnL phospho 94.6 0.026 5.7E-07 45.2 2.5 28 95-122 32-59 (224)
211 TIGR02533 type_II_gspE general 94.6 0.043 9.3E-07 49.8 4.1 25 98-122 243-267 (486)
212 TIGR00972 3a0107s01c2 phosphat 94.6 0.033 7.1E-07 45.4 3.1 28 95-122 25-52 (247)
213 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.025 5.4E-07 44.9 2.3 28 95-122 22-49 (211)
214 cd03257 ABC_NikE_OppD_transpor 94.5 0.024 5.2E-07 45.4 2.2 28 95-122 29-56 (228)
215 TIGR02323 CP_lyasePhnK phospho 94.5 0.024 5.1E-07 46.4 2.2 28 95-122 27-54 (253)
216 PRK11247 ssuB aliphatic sulfon 94.5 0.024 5.3E-07 46.9 2.3 28 95-122 36-63 (257)
217 PRK14528 adenylate kinase; Pro 94.5 0.036 7.9E-07 43.5 3.2 24 98-121 2-25 (186)
218 TIGR02203 MsbA_lipidA lipid A 94.5 0.03 6.4E-07 51.1 3.0 32 95-127 356-387 (571)
219 TIGR01978 sufC FeS assembly AT 94.5 0.033 7.1E-07 45.1 3.0 27 95-121 24-50 (243)
220 PRK14242 phosphate transporter 94.5 0.033 7.1E-07 45.6 3.0 27 95-121 30-56 (253)
221 PF06414 Zeta_toxin: Zeta toxi 94.5 0.038 8.2E-07 43.8 3.3 29 93-121 11-39 (199)
222 PRK14247 phosphate ABC transpo 94.5 0.034 7.3E-07 45.4 3.1 28 95-122 27-54 (250)
223 PRK13342 recombination factor 94.5 0.057 1.2E-06 47.7 4.7 37 86-122 25-61 (413)
224 cd03245 ABCC_bacteriocin_expor 94.5 0.029 6.4E-07 44.7 2.7 28 95-122 28-55 (220)
225 PRK10790 putative multidrug tr 94.5 0.026 5.5E-07 51.9 2.6 32 95-127 365-396 (592)
226 PRK11300 livG leucine/isoleuci 94.5 0.026 5.6E-07 46.2 2.3 32 95-127 29-60 (255)
227 PRK13946 shikimate kinase; Pro 94.5 0.038 8.2E-07 43.3 3.2 27 96-122 9-35 (184)
228 PF13173 AAA_14: AAA domain 94.5 0.045 9.7E-07 40.2 3.4 26 97-122 2-27 (128)
229 PHA00729 NTP-binding motif con 94.5 0.075 1.6E-06 43.5 5.0 28 95-122 15-42 (226)
230 cd03215 ABC_Carb_Monos_II This 94.5 0.026 5.6E-07 44.0 2.2 28 95-122 24-51 (182)
231 TIGR02770 nickel_nikD nickel i 94.5 0.034 7.4E-07 44.9 3.0 28 95-122 10-37 (230)
232 cd03254 ABCC_Glucan_exporter_l 94.5 0.03 6.4E-07 45.0 2.6 28 95-122 27-54 (229)
233 PRK03731 aroL shikimate kinase 94.4 0.039 8.5E-07 42.3 3.1 25 98-122 3-27 (171)
234 TIGR03797 NHPM_micro_ABC2 NHPM 94.4 0.026 5.7E-07 52.8 2.5 32 95-127 477-508 (686)
235 PRK13646 cbiO cobalt transport 94.4 0.028 6E-07 47.2 2.4 32 95-127 31-62 (286)
236 TIGR01277 thiQ thiamine ABC tr 94.4 0.028 6E-07 44.8 2.3 28 95-122 22-49 (213)
237 PRK14530 adenylate kinase; Pro 94.4 0.036 7.7E-07 44.4 3.0 24 99-122 5-28 (215)
238 PRK13947 shikimate kinase; Pro 94.4 0.037 8E-07 42.3 2.9 24 99-122 3-26 (171)
239 cd03247 ABCC_cytochrome_bd The 94.4 0.033 7.1E-07 43.2 2.7 32 95-127 26-57 (178)
240 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.035 7.6E-07 44.0 2.9 28 95-122 32-59 (207)
241 PLN02348 phosphoribulokinase 94.4 0.063 1.4E-06 47.4 4.7 28 95-122 47-74 (395)
242 cd03252 ABCC_Hemolysin The ABC 94.4 0.032 6.9E-07 45.1 2.6 28 95-122 26-53 (237)
243 PRK14250 phosphate ABC transpo 94.4 0.029 6.2E-07 45.7 2.4 28 95-122 27-54 (241)
244 PF01637 Arch_ATPase: Archaeal 94.4 0.04 8.6E-07 43.4 3.1 32 90-121 13-44 (234)
245 PRK13657 cyclic beta-1,2-gluca 94.4 0.028 6.1E-07 51.7 2.6 32 95-127 359-390 (588)
246 KOG0924|consensus 94.4 0.032 7E-07 52.3 2.9 37 80-122 357-393 (1042)
247 PRK14956 DNA polymerase III su 94.4 0.074 1.6E-06 48.1 5.1 36 88-123 30-66 (484)
248 TIGR01193 bacteriocin_ABC ABC- 94.4 0.03 6.4E-07 52.7 2.7 32 95-127 498-529 (708)
249 cd03214 ABC_Iron-Siderophores_ 94.4 0.032 6.9E-07 43.4 2.5 28 95-122 23-50 (180)
250 cd01672 TMPK Thymidine monopho 94.3 0.039 8.5E-07 42.6 3.0 24 99-122 2-25 (200)
251 PRK10419 nikE nickel transport 94.3 0.029 6.3E-07 46.6 2.4 28 95-122 36-63 (268)
252 PRK13540 cytochrome c biogenes 94.3 0.041 8.9E-07 43.5 3.1 28 95-122 25-52 (200)
253 PRK11264 putative amino-acid A 94.3 0.03 6.5E-07 45.6 2.4 28 95-122 27-54 (250)
254 cd03250 ABCC_MRP_domain1 Domai 94.3 0.033 7.2E-07 44.0 2.6 28 95-122 29-56 (204)
255 cd03295 ABC_OpuCA_Osmoprotecti 94.3 0.032 6.9E-07 45.4 2.5 28 95-122 25-52 (242)
256 PRK13632 cbiO cobalt transport 94.3 0.032 6.9E-07 46.3 2.5 28 95-122 33-60 (271)
257 PRK14238 phosphate transporter 94.3 0.039 8.5E-07 45.8 3.1 27 95-121 48-74 (271)
258 cd03236 ABC_RNaseL_inhibitor_d 94.3 0.032 7E-07 46.2 2.5 33 94-127 23-55 (255)
259 cd03290 ABCC_SUR1_N The SUR do 94.3 0.035 7.5E-07 44.4 2.6 28 95-122 25-52 (218)
260 PRK06645 DNA polymerase III su 94.3 0.075 1.6E-06 48.5 5.0 32 92-123 38-69 (507)
261 TIGR03499 FlhF flagellar biosy 94.3 0.051 1.1E-06 45.7 3.8 43 80-122 169-219 (282)
262 cd03231 ABC_CcmA_heme_exporter 94.3 0.031 6.7E-07 44.3 2.3 28 95-122 24-51 (201)
263 PRK14248 phosphate ABC transpo 94.3 0.04 8.8E-07 45.5 3.1 27 95-121 45-71 (268)
264 cd03115 SRP The signal recogni 94.3 0.049 1.1E-06 41.8 3.4 24 99-122 2-25 (173)
265 TIGR00968 3a0106s01 sulfate AB 94.3 0.032 7E-07 45.3 2.5 28 95-122 24-51 (237)
266 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.034 7.4E-07 45.0 2.6 32 95-127 27-58 (238)
267 PRK14274 phosphate ABC transpo 94.3 0.044 9.5E-07 45.1 3.3 27 95-121 36-62 (259)
268 PRK11174 cysteine/glutathione 94.3 0.028 6.1E-07 51.6 2.3 28 95-122 374-401 (588)
269 cd02029 PRK_like Phosphoribulo 94.3 0.041 8.8E-07 46.3 3.0 23 100-122 2-24 (277)
270 TIGR01189 ccmA heme ABC export 94.3 0.032 6.9E-07 44.0 2.3 28 95-122 24-51 (198)
271 PRK14251 phosphate ABC transpo 94.2 0.037 8.1E-07 45.2 2.8 27 95-121 28-54 (251)
272 PRK05537 bifunctional sulfate 94.2 0.041 8.8E-07 50.8 3.3 28 95-122 390-417 (568)
273 TIGR02788 VirB11 P-type DNA tr 94.2 0.032 6.9E-07 47.5 2.5 27 96-122 143-169 (308)
274 PRK10744 pstB phosphate transp 94.2 0.036 7.8E-07 45.6 2.7 27 95-121 37-63 (260)
275 PRK13638 cbiO cobalt transport 94.2 0.028 6.2E-07 46.6 2.1 28 95-122 25-52 (271)
276 TIGR03005 ectoine_ehuA ectoine 94.2 0.031 6.6E-07 45.8 2.3 28 95-122 24-51 (252)
277 cd03228 ABCC_MRP_Like The MRP 94.2 0.038 8.3E-07 42.6 2.7 28 95-122 26-53 (171)
278 PRK13894 conjugal transfer ATP 94.2 0.042 9.1E-07 47.2 3.2 27 96-122 147-173 (319)
279 PRK10771 thiQ thiamine transpo 94.2 0.032 7E-07 45.0 2.3 28 95-122 23-50 (232)
280 PRK09544 znuC high-affinity zi 94.2 0.031 6.8E-07 46.0 2.3 28 95-122 28-55 (251)
281 PRK13648 cbiO cobalt transport 94.2 0.032 6.9E-07 46.2 2.4 28 95-122 33-60 (269)
282 cd03267 ABC_NatA_like Similar 94.2 0.042 9.1E-07 44.6 3.0 28 95-122 45-72 (236)
283 PRK00625 shikimate kinase; Pro 94.2 0.043 9.4E-07 42.9 2.9 24 99-122 2-25 (173)
284 COG1660 Predicted P-loop-conta 94.2 0.033 7.1E-07 46.6 2.3 20 99-118 3-22 (286)
285 PRK08356 hypothetical protein; 94.2 0.036 7.8E-07 43.7 2.5 23 98-120 6-28 (195)
286 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.2 0.043 9.3E-07 44.3 3.0 28 95-122 46-73 (224)
287 TIGR03771 anch_rpt_ABC anchore 94.2 0.035 7.5E-07 44.7 2.4 28 95-122 4-31 (223)
288 PRK10247 putative ABC transpor 94.2 0.04 8.6E-07 44.4 2.8 28 95-122 31-58 (225)
289 cd03244 ABCC_MRP_domain2 Domai 94.2 0.039 8.5E-07 44.0 2.7 28 95-122 28-55 (221)
290 PRK10619 histidine/lysine/argi 94.2 0.033 7.1E-07 45.8 2.3 28 95-122 29-56 (257)
291 PRK14237 phosphate transporter 94.2 0.041 8.9E-07 45.6 2.9 27 95-121 44-70 (267)
292 PRK14974 cell division protein 94.2 0.11 2.4E-06 45.0 5.6 28 95-122 138-165 (336)
293 PRK14267 phosphate ABC transpo 94.2 0.044 9.6E-07 44.8 3.1 28 95-122 28-55 (253)
294 cd02026 PRK Phosphoribulokinas 94.2 0.04 8.7E-07 46.2 2.9 23 100-122 2-24 (273)
295 PRK14255 phosphate ABC transpo 94.2 0.044 9.6E-07 44.8 3.0 27 95-121 29-55 (252)
296 COG4619 ABC-type uncharacteriz 94.2 0.043 9.3E-07 43.5 2.8 31 96-127 28-58 (223)
297 PRK10575 iron-hydroxamate tran 94.1 0.031 6.7E-07 46.2 2.1 28 95-122 35-62 (265)
298 cd03232 ABC_PDR_domain2 The pl 94.1 0.044 9.5E-07 43.1 2.9 26 95-120 31-56 (192)
299 cd03233 ABC_PDR_domain1 The pl 94.1 0.044 9.6E-07 43.5 2.9 28 95-122 31-58 (202)
300 PRK14273 phosphate ABC transpo 94.1 0.039 8.5E-07 45.2 2.7 28 95-122 31-58 (254)
301 PRK15453 phosphoribulokinase; 94.1 0.055 1.2E-06 45.8 3.6 27 96-122 4-30 (290)
302 PRK05416 glmZ(sRNA)-inactivati 94.1 0.039 8.4E-07 46.7 2.7 22 97-118 6-27 (288)
303 PRK13764 ATPase; Provisional 94.1 0.055 1.2E-06 50.3 3.9 26 97-122 257-282 (602)
304 PRK06761 hypothetical protein; 94.1 0.039 8.4E-07 46.6 2.7 25 98-122 4-28 (282)
305 TIGR01188 drrA daunorubicin re 94.1 0.033 7.1E-07 47.1 2.2 28 95-122 17-44 (302)
306 COG4172 ABC-type uncharacteriz 94.1 0.037 7.9E-07 49.2 2.6 28 96-123 35-62 (534)
307 PRK13543 cytochrome c biogenes 94.1 0.035 7.5E-07 44.4 2.3 28 95-122 35-62 (214)
308 PRK10463 hydrogenase nickel in 94.1 0.097 2.1E-06 44.4 5.0 35 88-122 95-129 (290)
309 PRK11701 phnK phosphonate C-P 94.1 0.035 7.7E-07 45.6 2.4 28 95-122 30-57 (258)
310 cd03216 ABC_Carb_Monos_I This 94.1 0.048 1E-06 41.8 3.0 28 95-122 24-51 (163)
311 cd03248 ABCC_TAP TAP, the Tran 94.1 0.042 9.2E-07 44.1 2.8 28 95-122 38-65 (226)
312 PRK13949 shikimate kinase; Pro 94.1 0.048 1E-06 42.3 3.0 24 99-122 3-26 (169)
313 cd04155 Arl3 Arl3 subfamily. 94.1 0.062 1.3E-06 40.7 3.6 30 91-120 8-37 (173)
314 TIGR02857 CydD thiol reductant 94.1 0.034 7.3E-07 50.4 2.4 32 95-127 346-377 (529)
315 PRK10416 signal recognition pa 94.1 0.061 1.3E-06 46.2 3.8 28 95-122 112-139 (318)
316 PF07475 Hpr_kinase_C: HPr Ser 94.1 0.049 1.1E-06 42.7 3.0 24 96-119 17-40 (171)
317 PRK04220 2-phosphoglycerate ki 94.1 0.076 1.6E-06 45.3 4.3 30 93-122 88-117 (301)
318 TIGR01288 nodI ATP-binding ABC 94.1 0.034 7.4E-07 47.0 2.3 28 95-122 28-55 (303)
319 TIGR03740 galliderm_ABC gallid 94.0 0.05 1.1E-06 43.6 3.1 28 95-122 24-51 (223)
320 PRK14240 phosphate transporter 94.0 0.048 1E-06 44.5 3.1 27 95-121 27-53 (250)
321 TIGR03375 type_I_sec_LssB type 94.0 0.035 7.7E-07 52.1 2.5 32 95-127 489-520 (694)
322 TIGR02769 nickel_nikE nickel i 94.0 0.036 7.7E-07 45.8 2.3 32 95-127 35-66 (265)
323 TIGR00176 mobB molybdopterin-g 94.0 0.052 1.1E-06 41.6 3.0 23 100-122 2-24 (155)
324 PRK13631 cbiO cobalt transport 94.0 0.038 8.2E-07 47.3 2.5 32 95-127 50-81 (320)
325 PRK13548 hmuV hemin importer A 94.0 0.037 7.9E-07 45.6 2.3 28 95-122 26-53 (258)
326 PRK10895 lipopolysaccharide AB 94.0 0.038 8.3E-07 44.8 2.4 28 95-122 27-54 (241)
327 TIGR02640 gas_vesic_GvpN gas v 94.0 0.098 2.1E-06 43.4 4.8 41 78-121 5-45 (262)
328 PRK08116 hypothetical protein; 94.0 0.14 3E-06 42.8 5.8 27 96-122 113-139 (268)
329 cd03116 MobB Molybdenum is an 94.0 0.061 1.3E-06 41.5 3.3 25 98-122 2-26 (159)
330 PRK06620 hypothetical protein; 94.0 0.11 2.4E-06 42.0 5.0 23 98-120 45-67 (214)
331 PRK09087 hypothetical protein; 94.0 0.098 2.1E-06 42.6 4.7 24 96-119 43-66 (226)
332 PRK14964 DNA polymerase III su 94.0 0.081 1.8E-06 48.1 4.6 36 87-122 24-60 (491)
333 cd03251 ABCC_MsbA MsbA is an e 94.0 0.045 9.8E-07 44.1 2.8 28 95-122 26-53 (234)
334 PRK10646 ADP-binding protein; 94.0 0.15 3.4E-06 39.2 5.5 28 95-122 26-53 (153)
335 PF01695 IstB_IS21: IstB-like 94.0 0.063 1.4E-06 42.1 3.4 28 95-122 45-72 (178)
336 PRK14269 phosphate ABC transpo 94.0 0.052 1.1E-06 44.3 3.1 27 95-121 26-52 (246)
337 PRK14260 phosphate ABC transpo 94.0 0.051 1.1E-06 44.7 3.0 28 95-122 31-58 (259)
338 PRK15112 antimicrobial peptide 94.0 0.039 8.5E-07 45.7 2.4 28 95-122 37-64 (267)
339 PRK12608 transcription termina 93.9 0.065 1.4E-06 47.1 3.8 41 82-122 118-158 (380)
340 PRK13639 cbiO cobalt transport 93.9 0.038 8.1E-07 46.1 2.3 28 95-122 26-53 (275)
341 PRK14235 phosphate transporter 93.9 0.054 1.2E-06 44.9 3.2 28 95-122 43-70 (267)
342 PRK15056 manganese/iron transp 93.9 0.038 8.1E-07 45.9 2.2 28 95-122 31-58 (272)
343 COG1132 MdlB ABC-type multidru 93.9 0.04 8.6E-07 50.5 2.6 32 95-127 353-384 (567)
344 PRK14239 phosphate transporter 93.9 0.052 1.1E-06 44.3 3.0 26 95-120 29-54 (252)
345 TIGR00958 3a01208 Conjugate Tr 93.9 0.045 9.9E-07 51.6 3.0 32 95-127 505-536 (711)
346 PRK14532 adenylate kinase; Pro 93.9 0.052 1.1E-06 42.3 2.9 24 99-122 2-25 (188)
347 PRK14955 DNA polymerase III su 93.9 0.12 2.6E-06 45.5 5.5 56 66-123 8-64 (397)
348 PRK13649 cbiO cobalt transport 93.9 0.036 7.8E-07 46.2 2.1 28 95-122 31-58 (280)
349 TIGR02902 spore_lonB ATP-depen 93.9 0.083 1.8E-06 48.4 4.6 33 90-122 79-111 (531)
350 TIGR03411 urea_trans_UrtD urea 93.9 0.042 9E-07 44.6 2.4 28 95-122 26-53 (242)
351 PF00308 Bac_DnaA: Bacterial d 93.9 0.13 2.8E-06 41.6 5.3 25 98-122 35-59 (219)
352 PRK08154 anaerobic benzoate ca 93.9 0.1 2.2E-06 44.4 4.9 48 75-122 107-158 (309)
353 PRK10418 nikD nickel transport 93.9 0.053 1.2E-06 44.5 3.1 28 95-122 27-54 (254)
354 PRK02496 adk adenylate kinase; 93.9 0.055 1.2E-06 42.1 3.0 23 99-121 3-25 (184)
355 PRK14244 phosphate ABC transpo 93.9 0.055 1.2E-06 44.2 3.1 27 95-121 29-55 (251)
356 COG3839 MalK ABC-type sugar tr 93.9 0.05 1.1E-06 47.1 2.9 27 96-122 28-54 (338)
357 PRK10851 sulfate/thiosulfate t 93.9 0.04 8.7E-07 47.8 2.4 28 95-122 26-53 (353)
358 cd03213 ABCG_EPDR ABCG transpo 93.8 0.056 1.2E-06 42.6 3.0 27 95-121 33-59 (194)
359 COG3638 ABC-type phosphate/pho 93.8 0.061 1.3E-06 44.4 3.2 24 96-119 29-52 (258)
360 PF12775 AAA_7: P-loop contain 93.8 0.15 3.2E-06 42.7 5.7 42 78-120 15-56 (272)
361 PLN02200 adenylate kinase fami 93.8 0.069 1.5E-06 43.7 3.6 27 96-122 42-68 (234)
362 PRK14241 phosphate transporter 93.8 0.055 1.2E-06 44.5 3.0 28 95-122 28-55 (258)
363 cd01428 ADK Adenylate kinase ( 93.8 0.052 1.1E-06 42.1 2.8 23 100-122 2-24 (194)
364 PF04665 Pox_A32: Poxvirus A32 93.8 0.055 1.2E-06 44.7 3.0 24 99-122 15-38 (241)
365 PRK14263 phosphate ABC transpo 93.8 0.048 1E-06 45.1 2.7 28 95-122 32-59 (261)
366 smart00072 GuKc Guanylate kina 93.8 0.05 1.1E-06 42.5 2.6 23 99-121 4-26 (184)
367 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.8 0.04 8.7E-07 41.5 2.0 28 95-122 24-51 (144)
368 PRK14262 phosphate ABC transpo 93.8 0.056 1.2E-06 44.1 3.0 28 95-122 27-54 (250)
369 PRK14268 phosphate ABC transpo 93.8 0.056 1.2E-06 44.4 3.1 28 95-122 36-63 (258)
370 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.058 1.3E-06 42.7 3.0 27 95-121 24-50 (200)
371 COG4167 SapF ABC-type antimicr 93.8 0.046 9.9E-07 43.9 2.3 34 93-127 35-68 (267)
372 TIGR00101 ureG urease accessor 93.8 0.066 1.4E-06 42.7 3.3 25 98-122 2-26 (199)
373 TIGR02881 spore_V_K stage V sp 93.8 0.058 1.3E-06 44.6 3.1 27 96-122 41-67 (261)
374 COG4778 PhnL ABC-type phosphon 93.8 0.056 1.2E-06 42.9 2.8 25 95-119 35-59 (235)
375 TIGR03796 NHPM_micro_ABC1 NHPM 93.8 0.042 9.1E-07 51.7 2.5 32 95-127 503-534 (710)
376 PRK14243 phosphate transporter 93.8 0.062 1.3E-06 44.4 3.3 27 95-121 34-60 (264)
377 TIGR00073 hypB hydrogenase acc 93.8 0.097 2.1E-06 41.7 4.3 33 90-122 15-47 (207)
378 PRK11831 putative ABC transpor 93.8 0.042 9.1E-07 45.6 2.3 28 95-122 31-58 (269)
379 TIGR00041 DTMP_kinase thymidyl 93.8 0.075 1.6E-06 41.5 3.6 26 97-122 3-28 (195)
380 cd03264 ABC_drug_resistance_li 93.8 0.04 8.7E-07 43.7 2.0 24 99-122 27-50 (211)
381 cd03253 ABCC_ATM1_transporter 93.8 0.052 1.1E-06 43.8 2.7 32 95-127 25-56 (236)
382 PRK09984 phosphonate/organopho 93.8 0.058 1.2E-06 44.4 3.0 28 95-122 28-55 (262)
383 PRK14259 phosphate ABC transpo 93.7 0.058 1.3E-06 44.8 3.0 27 95-121 37-63 (269)
384 PRK14270 phosphate ABC transpo 93.7 0.06 1.3E-06 44.0 3.1 28 95-122 28-55 (251)
385 PRK14265 phosphate ABC transpo 93.7 0.059 1.3E-06 44.9 3.1 27 95-121 44-70 (274)
386 PRK14256 phosphate ABC transpo 93.7 0.06 1.3E-06 44.0 3.1 27 95-121 28-54 (252)
387 TIGR00678 holB DNA polymerase 93.7 0.13 2.8E-06 40.1 4.9 34 89-122 5-39 (188)
388 PRK09112 DNA polymerase III su 93.7 0.12 2.7E-06 44.9 5.1 39 85-123 32-71 (351)
389 PRK11144 modC molybdate transp 93.7 0.058 1.3E-06 46.7 3.1 28 95-122 22-49 (352)
390 PF08477 Miro: Miro-like prote 93.7 0.064 1.4E-06 38.1 2.9 23 99-121 1-23 (119)
391 COG2805 PilT Tfp pilus assembl 93.7 0.058 1.3E-06 46.1 3.0 28 96-123 124-151 (353)
392 PRK00279 adk adenylate kinase; 93.7 0.065 1.4E-06 42.9 3.2 24 99-122 2-25 (215)
393 cd01128 rho_factor Transcripti 93.7 0.039 8.3E-07 45.8 1.8 32 91-122 10-41 (249)
394 PRK14253 phosphate ABC transpo 93.7 0.064 1.4E-06 43.7 3.1 28 95-122 27-54 (249)
395 KOG0056|consensus 93.7 0.075 1.6E-06 48.5 3.7 32 95-127 562-593 (790)
396 PRK11153 metN DL-methionine tr 93.7 0.043 9.2E-07 47.4 2.2 28 95-122 29-56 (343)
397 PRK14962 DNA polymerase III su 93.7 0.14 3.1E-06 46.2 5.6 37 86-122 24-61 (472)
398 PRK13695 putative NTPase; Prov 93.7 0.066 1.4E-06 41.3 3.0 24 99-122 2-25 (174)
399 CHL00131 ycf16 sulfate ABC tra 93.6 0.06 1.3E-06 43.9 2.9 26 95-120 31-56 (252)
400 PRK10253 iron-enterobactin tra 93.6 0.058 1.3E-06 44.6 2.8 28 95-122 31-58 (265)
401 PRK13640 cbiO cobalt transport 93.6 0.052 1.1E-06 45.4 2.6 28 95-122 31-58 (282)
402 PRK13642 cbiO cobalt transport 93.6 0.052 1.1E-06 45.2 2.6 32 95-127 31-62 (277)
403 PRK13647 cbiO cobalt transport 93.6 0.048 1E-06 45.4 2.3 28 95-122 29-56 (274)
404 TIGR03415 ABC_choXWV_ATP choli 93.6 0.045 9.7E-07 48.1 2.2 32 95-127 48-79 (382)
405 PRK11432 fbpC ferric transport 93.6 0.046 1E-06 47.5 2.3 28 95-122 30-57 (351)
406 TIGR02858 spore_III_AA stage I 93.6 0.09 2E-06 44.1 4.0 41 82-122 96-136 (270)
407 TIGR02982 heterocyst_DevA ABC 93.6 0.048 1E-06 43.7 2.2 28 95-122 29-56 (220)
408 PRK14957 DNA polymerase III su 93.6 0.15 3.2E-06 47.0 5.6 55 65-123 7-64 (546)
409 PRK11614 livF leucine/isoleuci 93.6 0.044 9.5E-07 44.4 2.0 28 95-122 29-56 (237)
410 PRK03695 vitamin B12-transport 93.6 0.063 1.4E-06 44.0 3.0 28 95-122 20-47 (248)
411 TIGR00635 ruvB Holliday juncti 93.6 0.12 2.6E-06 43.3 4.7 28 95-122 28-55 (305)
412 cd03288 ABCC_SUR2 The SUR doma 93.6 0.06 1.3E-06 44.3 2.8 32 95-127 45-76 (257)
413 PRK11231 fecE iron-dicitrate t 93.6 0.05 1.1E-06 44.6 2.3 28 95-122 26-53 (255)
414 cd00879 Sar1 Sar1 subfamily. 93.6 0.14 3E-06 39.5 4.8 34 86-119 8-41 (190)
415 TIGR02880 cbbX_cfxQ probable R 93.6 0.065 1.4E-06 45.1 3.1 24 99-122 60-83 (284)
416 PRK14272 phosphate ABC transpo 93.5 0.067 1.5E-06 43.6 3.1 28 95-122 28-55 (252)
417 PRK13652 cbiO cobalt transport 93.5 0.05 1.1E-06 45.3 2.3 32 95-127 28-59 (277)
418 cd03273 ABC_SMC2_euk Eukaryoti 93.5 0.073 1.6E-06 43.6 3.3 26 97-122 25-50 (251)
419 CHL00081 chlI Mg-protoporyphyr 93.5 0.12 2.6E-06 45.0 4.7 28 95-122 36-63 (350)
420 PRK10261 glutathione transport 93.5 0.048 1E-06 50.7 2.4 28 95-122 40-67 (623)
421 PRK13635 cbiO cobalt transport 93.5 0.053 1.2E-06 45.3 2.5 32 95-127 31-62 (279)
422 TIGR00064 ftsY signal recognit 93.5 0.09 2E-06 44.1 3.8 28 95-122 70-97 (272)
423 COG1131 CcmA ABC-type multidru 93.5 0.052 1.1E-06 45.9 2.4 32 95-127 29-60 (293)
424 PRK10522 multidrug transporter 93.5 0.047 1E-06 49.8 2.3 28 95-122 347-374 (547)
425 COG1618 Predicted nucleotide k 93.5 0.08 1.7E-06 41.4 3.2 25 98-122 6-30 (179)
426 TIGR01186 proV glycine betaine 93.5 0.045 9.8E-07 47.8 2.1 32 95-127 17-48 (363)
427 KOG3354|consensus 93.5 0.07 1.5E-06 41.6 2.8 24 99-122 14-37 (191)
428 PRK13547 hmuV hemin importer A 93.5 0.067 1.4E-06 44.6 3.0 28 95-122 25-52 (272)
429 PRK06921 hypothetical protein; 93.5 0.19 4E-06 42.0 5.6 27 96-122 116-142 (266)
430 PRK13650 cbiO cobalt transport 93.5 0.054 1.2E-06 45.2 2.4 32 95-127 31-62 (279)
431 PF00158 Sigma54_activat: Sigm 93.5 0.068 1.5E-06 41.6 2.8 26 95-120 20-45 (168)
432 PRK09580 sufC cysteine desulfu 93.5 0.063 1.4E-06 43.6 2.8 27 95-121 25-51 (248)
433 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.075 1.6E-06 40.2 3.0 28 95-122 23-50 (157)
434 TIGR00017 cmk cytidylate kinas 93.4 0.075 1.6E-06 43.0 3.2 24 99-122 4-27 (217)
435 PLN02796 D-glycerate 3-kinase 93.4 0.15 3.3E-06 44.3 5.2 25 98-122 101-125 (347)
436 PF08433 KTI12: Chromatin asso 93.4 0.067 1.5E-06 44.9 2.9 24 99-122 3-26 (270)
437 COG3842 PotA ABC-type spermidi 93.4 0.065 1.4E-06 46.6 2.9 27 96-122 30-56 (352)
438 PRK11160 cysteine/glutathione 93.4 0.054 1.2E-06 49.8 2.5 32 95-127 364-395 (574)
439 PRK13636 cbiO cobalt transport 93.4 0.055 1.2E-06 45.3 2.4 32 95-127 30-61 (283)
440 PRK05439 pantothenate kinase; 93.4 0.14 3.1E-06 43.8 5.0 28 95-122 84-111 (311)
441 PRK14271 phosphate ABC transpo 93.4 0.072 1.6E-06 44.4 3.1 28 95-122 45-72 (276)
442 cd03283 ABC_MutS-like MutS-lik 93.4 0.063 1.4E-06 42.8 2.6 25 97-121 25-49 (199)
443 cd01983 Fer4_NifH The Fer4_Nif 93.4 0.093 2E-06 35.2 3.2 23 100-122 2-24 (99)
444 PLN02318 phosphoribulokinase/u 93.4 0.12 2.6E-06 48.1 4.7 41 82-122 49-90 (656)
445 PRK10070 glycine betaine trans 93.4 0.052 1.1E-06 48.0 2.3 32 95-127 52-83 (400)
446 COG1116 TauB ABC-type nitrate/ 93.4 0.073 1.6E-06 44.1 3.0 32 95-127 27-58 (248)
447 PRK13634 cbiO cobalt transport 93.4 0.056 1.2E-06 45.4 2.4 28 95-122 31-58 (290)
448 PF13604 AAA_30: AAA domain; P 93.4 0.16 3.5E-06 40.3 4.9 36 86-122 8-43 (196)
449 PRK13651 cobalt transporter AT 93.4 0.054 1.2E-06 46.0 2.3 32 95-127 31-62 (305)
450 PRK13975 thymidylate kinase; P 93.4 0.075 1.6E-06 41.5 3.0 25 98-122 3-27 (196)
451 PRK14254 phosphate ABC transpo 93.4 0.074 1.6E-06 44.6 3.1 27 95-121 63-89 (285)
452 TIGR01351 adk adenylate kinase 93.4 0.068 1.5E-06 42.6 2.7 22 100-121 2-23 (210)
453 TIGR02903 spore_lon_C ATP-depe 93.4 0.13 2.8E-06 48.0 5.0 32 91-122 169-200 (615)
454 COG2884 FtsE Predicted ATPase 93.3 0.066 1.4E-06 43.1 2.6 28 95-122 26-53 (223)
455 PRK13637 cbiO cobalt transport 93.3 0.057 1.2E-06 45.3 2.3 28 95-122 31-58 (287)
456 PRK13341 recombination factor 93.3 0.13 2.8E-06 48.9 5.0 37 86-122 41-77 (725)
457 COG4175 ProV ABC-type proline/ 93.3 0.097 2.1E-06 45.2 3.7 32 95-127 52-83 (386)
458 PRK14252 phosphate ABC transpo 93.3 0.077 1.7E-06 43.8 3.1 27 95-121 40-66 (265)
459 PRK10436 hypothetical protein; 93.3 0.066 1.4E-06 48.3 2.9 26 97-122 218-243 (462)
460 cd04163 Era Era subfamily. Er 93.3 0.078 1.7E-06 39.0 2.8 24 97-120 3-26 (168)
461 PRK14261 phosphate ABC transpo 93.3 0.079 1.7E-06 43.3 3.1 27 95-121 30-56 (253)
462 TIGR01842 type_I_sec_PrtD type 93.3 0.058 1.3E-06 49.2 2.5 32 95-127 342-373 (544)
463 PRK10789 putative multidrug tr 93.3 0.063 1.4E-06 49.3 2.7 32 95-127 339-370 (569)
464 PRK09435 membrane ATPase/prote 93.3 0.23 4.9E-06 42.9 6.0 29 94-122 53-81 (332)
465 TIGR03873 F420-0_ABC_ATP propo 93.3 0.057 1.2E-06 44.3 2.2 28 95-122 25-52 (256)
466 PRK10261 glutathione transport 93.2 0.058 1.3E-06 50.2 2.5 28 95-122 348-375 (623)
467 PRK00023 cmk cytidylate kinase 93.2 0.087 1.9E-06 42.8 3.2 26 97-122 4-29 (225)
468 PRK11650 ugpC glycerol-3-phosp 93.2 0.053 1.2E-06 47.1 2.1 28 95-122 28-55 (356)
469 PRK14266 phosphate ABC transpo 93.2 0.089 1.9E-06 42.9 3.3 27 95-121 27-53 (250)
470 PRK07003 DNA polymerase III su 93.2 0.14 3E-06 48.9 4.9 37 87-123 27-64 (830)
471 cd03299 ABC_ModC_like Archeal 93.2 0.063 1.4E-06 43.5 2.4 28 95-122 23-50 (235)
472 COG0703 AroK Shikimate kinase 93.2 0.083 1.8E-06 41.5 2.9 26 97-122 2-27 (172)
473 PRK05896 DNA polymerase III su 93.2 0.18 4E-06 46.9 5.6 54 66-123 8-64 (605)
474 PRK11000 maltose/maltodextrin 93.2 0.057 1.2E-06 47.1 2.2 27 96-122 28-54 (369)
475 PRK14249 phosphate ABC transpo 93.2 0.085 1.8E-06 43.1 3.1 28 95-122 28-55 (251)
476 PRK14970 DNA polymerase III su 93.2 0.24 5.2E-06 42.8 6.1 56 65-122 8-64 (367)
477 cd03300 ABC_PotA_N PotA is an 93.1 0.067 1.5E-06 43.2 2.5 28 95-122 24-51 (232)
478 PF12774 AAA_6: Hydrolytic ATP 93.1 0.16 3.5E-06 41.6 4.6 40 83-122 17-57 (231)
479 PRK14236 phosphate transporter 93.1 0.076 1.6E-06 44.1 2.8 28 95-122 49-76 (272)
480 PRK13546 teichoic acids export 93.1 0.083 1.8E-06 43.9 3.0 28 95-122 48-75 (264)
481 PRK13633 cobalt transporter AT 93.1 0.064 1.4E-06 44.8 2.3 28 95-122 34-61 (280)
482 cd01876 YihA_EngB The YihA (En 93.1 0.071 1.5E-06 39.4 2.4 23 100-122 2-26 (170)
483 PRK13537 nodulation ABC transp 93.1 0.063 1.4E-06 45.6 2.3 32 95-127 31-62 (306)
484 PRK10938 putative molybdenum t 93.1 0.067 1.4E-06 48.1 2.5 28 95-122 27-54 (490)
485 PRK14245 phosphate ABC transpo 93.0 0.086 1.9E-06 43.0 3.0 26 95-120 27-52 (250)
486 TIGR01192 chvA glucan exporter 93.0 0.065 1.4E-06 49.4 2.5 32 95-127 359-390 (585)
487 TIGR02142 modC_ABC molybdenum 93.0 0.064 1.4E-06 46.5 2.3 28 95-122 21-48 (354)
488 PTZ00088 adenylate kinase 1; P 93.0 0.11 2.3E-06 42.5 3.5 26 97-122 6-31 (229)
489 cd01124 KaiC KaiC is a circadi 93.0 0.088 1.9E-06 40.5 2.9 24 99-122 1-24 (187)
490 cd03289 ABCC_CFTR2 The CFTR su 93.0 0.087 1.9E-06 44.1 3.0 28 95-122 28-55 (275)
491 TIGR01194 cyc_pep_trnsptr cycl 93.0 0.061 1.3E-06 49.2 2.3 32 95-127 366-397 (555)
492 PRK04195 replication factor C 93.0 0.12 2.5E-06 46.7 4.0 27 96-122 38-64 (482)
493 PRK07429 phosphoribulokinase; 93.0 0.1 2.2E-06 45.0 3.4 27 96-122 7-33 (327)
494 PRK14275 phosphate ABC transpo 93.0 0.089 1.9E-06 44.1 3.0 27 95-121 63-89 (286)
495 TIGR02538 type_IV_pilB type IV 93.0 0.078 1.7E-06 48.9 2.9 25 98-122 317-341 (564)
496 COG1118 CysA ABC-type sulfate/ 93.0 0.085 1.9E-06 45.2 2.9 28 95-122 26-53 (345)
497 COG1493 HprK Serine kinase of 93.0 0.079 1.7E-06 45.0 2.7 25 96-120 144-168 (308)
498 PRK09183 transposase/IS protei 93.0 0.1 2.3E-06 43.3 3.4 27 96-122 101-127 (259)
499 PRK01184 hypothetical protein; 93.0 0.083 1.8E-06 41.0 2.6 18 99-116 3-20 (184)
500 PRK13643 cbiO cobalt transport 92.9 0.07 1.5E-06 44.8 2.3 28 95-122 30-57 (288)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-61 Score=457.77 Aligned_cols=177 Identities=43% Similarity=0.731 Sum_probs=169.6
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHH
Q psy18111 9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAY 88 (186)
Q Consensus 9 ~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~ 88 (186)
.-.+++||+.|++|||++|+++|++||.+++||||.|-+|||||||+++++|+++++..|.++++.+++||||+||+.||
T Consensus 64 ~~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY 143 (1463)
T COG5022 64 KFDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAY 143 (1463)
T ss_pred cccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC-CCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG-TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL 167 (186)
Q Consensus 89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~-~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~ 167 (186)
++|...++|||||++||||||||+++|+||+||+ .+.+ +....+.++++|+++||||||||||||++||||||||||+
T Consensus 144 ~~lls~~eNQtIiISGESGAGKTe~aK~ImqYla-sv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyi 222 (1463)
T COG5022 144 RNLLSEKENQTIIISGESGAGKTENAKRIMQYLA-SVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYI 222 (1463)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHH-HhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceE
Confidence 9999999999999999999999999999999999 5544 3445678999999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEecccC
Q psy18111 168 DIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 168 ~l~f~~~g~i~ga~i~~y~ 186 (186)
+|.||..|.|+||+|++||
T Consensus 223 kI~Fd~~g~I~GA~I~~YL 241 (1463)
T COG5022 223 KIEFDENGEICGAKIETYL 241 (1463)
T ss_pred EEEECCCCceechhhhhhh
Confidence 9999999999999999997
No 2
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=3.2e-60 Score=436.96 Aligned_cols=181 Identities=40% Similarity=0.666 Sum_probs=171.8
Q ss_pred CCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCC-CCCCCchHHHh
Q psy18111 5 LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRG-PFQLPPHIFAI 83 (186)
Q Consensus 5 ~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~-~~~~~PHi~~~ 83 (186)
++.++..++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++. ..++|||||++
T Consensus 1 ~~~~~~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~i 80 (692)
T cd01385 1 LLQRQQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAI 80 (692)
T ss_pred CCCCCcCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999877 78899999999
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCc
Q psy18111 84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRF 163 (186)
Q Consensus 84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~ 163 (186)
|++||+.|+..+++||||++|||||||||++|.+++||+ ..++.+.....++++|++++|||||||||||.+|+|||||
T Consensus 81 A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~-~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRF 159 (692)
T cd01385 81 ADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLT-ALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRF 159 (692)
T ss_pred HHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHH-HhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCcccc
Confidence 999999999999999999999999999999999999999 7765544456789999999999999999999999999999
Q ss_pred eeeEEEEEcCCCCeeeeEecccC
Q psy18111 164 GKYLDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 164 gk~~~l~f~~~g~i~ga~i~~y~ 186 (186)
|||++|+|+.+|.|+||+|++||
T Consensus 160 GK~i~l~F~~~g~i~Ga~i~~yL 182 (692)
T cd01385 160 GKFIQVNYRENGMVRGAVVEKYL 182 (692)
T ss_pred ceeEEEEECCCCCEEEEEEEEee
Confidence 99999999999999999999996
No 3
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.1e-60 Score=441.86 Aligned_cols=175 Identities=33% Similarity=0.519 Sum_probs=164.6
Q ss_pred CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcC-CCCCCCchHHHhHHHHH
Q psy18111 10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR-GPFQLPPHIFAIAGSAY 88 (186)
Q Consensus 10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~-~~~~~~PHi~~~a~~a~ 88 (186)
+.+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+|+|+++++..|++. ...++|||||++|+.||
T Consensus 95 ~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay 174 (821)
T PTZ00014 95 PMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRAL 174 (821)
T ss_pred cCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999985 46789999999999999
Q ss_pred HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168 (186)
Q Consensus 89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~ 168 (186)
++|+..+++||||++|||||||||++|.+++||+ ..++. .....++++|+++||||||||||||.+|+||||||||++
T Consensus 175 ~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla-~~~~~-~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~ 252 (821)
T PTZ00014 175 ENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFA-SSKSG-NMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQ 252 (821)
T ss_pred HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHH-HhccC-CCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEE
Confidence 9999999999999999999999999999999999 55432 223578999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEecccC
Q psy18111 169 IEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 169 l~f~~~g~i~ga~i~~y~ 186 (186)
|+|+.+|.|+||+|++||
T Consensus 253 i~F~~~g~i~Ga~I~~YL 270 (821)
T PTZ00014 253 LQLGEEGGIRYGSIVAFL 270 (821)
T ss_pred EEEcCCCcEeeEEEEEEe
Confidence 999999999999999996
No 4
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.5e-60 Score=436.88 Aligned_cols=174 Identities=44% Similarity=0.703 Sum_probs=166.4
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
|+|||+.|+++||++||++|++||.+++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC---CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG---PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~---~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~ 168 (186)
++.+++||||++|||||||||++|.|++||+ ..++.. .....++++|++++|||||||||||.+|+||||||||++
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa-~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFA-SVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHH-HhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 9999999999999999999999999999999 766532 224578999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEecccC
Q psy18111 169 IEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 169 l~f~~~g~i~ga~i~~y~ 186 (186)
|+|+.+|+|+||+|.+||
T Consensus 160 l~f~~~g~i~Ga~i~~yL 177 (691)
T cd01380 160 ILFDKRGRIIGANMRTYL 177 (691)
T ss_pred EEECCCCCEEEEEEEEee
Confidence 999999999999999996
No 5
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=6e-60 Score=435.48 Aligned_cols=176 Identities=41% Similarity=0.683 Sum_probs=167.4
Q ss_pred CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111 10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR 89 (186)
Q Consensus 10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~ 89 (186)
..+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++...++|||||++|++||+
T Consensus 4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~ 83 (693)
T cd01377 4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYR 83 (693)
T ss_pred ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC-------chhhHHHHHhhccchHHhhcCccccCCCCCCC
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP-------VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSR 162 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~-------~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR 162 (186)
.|+..+++||||++|||||||||++|.|++||+ ..++... ....++++|++++|||||||||||.+|+||||
T Consensus 84 ~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa-~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR 162 (693)
T cd01377 84 SMLQDRENQSILITGESGAGKTENTKKVIQYLA-SVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR 162 (693)
T ss_pred HHHhcCCCceEEEEcCCCCCchHHHHHHHHHHH-hhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence 999999999999999999999999999999999 6665322 24578999999999999999999999999999
Q ss_pred ceeeEEEEEcCCCCeeeeEecccC
Q psy18111 163 FGKYLDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 163 ~gk~~~l~f~~~g~i~ga~i~~y~ 186 (186)
||||++|+|+.+|+|+||+|.+||
T Consensus 163 FGK~i~l~f~~~g~i~Ga~i~~yL 186 (693)
T cd01377 163 FGKFIRIHFGNTGKIAGADIETYL 186 (693)
T ss_pred cceeEEEEECCCCCEEEEEEEEEe
Confidence 999999999999999999999996
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.1e-59 Score=432.26 Aligned_cols=171 Identities=45% Similarity=0.811 Sum_probs=164.8
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++...++|||||++|+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF 171 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f 171 (186)
+..+++||||++|||||||||++|.+++||+ ..++. ...++++|++++|||||||||||.+|+||||||||++|+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa-~~s~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F 156 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLA-AISGK---HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 156 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHH-HhcCC---CCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEE
Confidence 9999999999999999999999999999999 76653 2458899999999999999999999999999999999999
Q ss_pred cCCCCeeeeEecccC
Q psy18111 172 DYKGDPLGAHITNCK 186 (186)
Q Consensus 172 ~~~g~i~ga~i~~y~ 186 (186)
+.+|+|+||+|.+||
T Consensus 157 ~~~g~i~Ga~i~~yL 171 (671)
T cd01381 157 NKRGAIEGAKIEQYL 171 (671)
T ss_pred CCCCcEEEEEEEEEe
Confidence 999999999999996
No 7
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.6e-59 Score=431.52 Aligned_cols=174 Identities=51% Similarity=0.932 Sum_probs=167.6
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF 171 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f 171 (186)
+..+++||||++|||||||||++|.+++||+ ..+++......+++++++++|||||||||||.+|+||||||||++|+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~-~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f 159 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIA-AVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQF 159 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHH-hcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEE
Confidence 9999999999999999999999999999999 777655445678999999999999999999999999999999999999
Q ss_pred cCCCCeeeeEecccC
Q psy18111 172 DYKGDPLGAHITNCK 186 (186)
Q Consensus 172 ~~~g~i~ga~i~~y~ 186 (186)
+.+|.++||+|++||
T Consensus 160 ~~~g~i~ga~i~~yL 174 (674)
T cd01378 160 DFKGDPVGGKITNYL 174 (674)
T ss_pred CCCCCEeeEEEEEee
Confidence 999999999999996
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=5.9e-59 Score=427.27 Aligned_cols=175 Identities=41% Similarity=0.681 Sum_probs=166.4
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111 11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGSAYR 89 (186)
Q Consensus 11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~ 89 (186)
.+++||+.|+++||++||++|++||.+++||||+|++||+||||+++| +|+++.+..|+++...++|||||++|++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC-CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG-PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~-~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~ 168 (186)
.|+..+++||||++|||||||||++|.+++||+ ..++.. .....++++|++++|||||||||||.+|+||||||||++
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa-~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~ 159 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLA-YMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 159 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHH-hhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEE
Confidence 999999999999999999999999999999999 665432 233568999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEecccC
Q psy18111 169 IEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 169 l~f~~~g~i~ga~i~~y~ 186 (186)
|+|+.+|+|+||+|.+||
T Consensus 160 l~f~~~g~i~Ga~i~~yL 177 (674)
T cd01384 160 IQFDDYGRISGAAIRTYL 177 (674)
T ss_pred EEECCCCcEEEEEEEEEe
Confidence 999999999999999996
No 9
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.1e-58 Score=428.26 Aligned_cols=175 Identities=41% Similarity=0.744 Sum_probs=167.4
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111 8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGS 86 (186)
Q Consensus 8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ 86 (186)
|.+.++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+| +|+++++..|+++...++|||||++|+.
T Consensus 1 ~~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~ 80 (717)
T cd01382 1 DSKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADK 80 (717)
T ss_pred CCCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHH
Confidence 456789999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY 166 (186)
Q Consensus 87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~ 166 (186)
||+.|++.+++||||++|||||||||++|.+++||+ ..++++ ..++++|++++|||||||||||.+|+||||||||
T Consensus 81 Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa-~~~~~~---~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~ 156 (717)
T cd01382 81 AYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLT-ESYGSG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF 156 (717)
T ss_pred HHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHH-hhccCC---ccHHHHHHHHHHHHHHhhccccCCCCCcccceeE
Confidence 999999999999999999999999999999999999 665432 5688999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeeeEecccC
Q psy18111 167 LDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 167 ~~l~f~~~g~i~ga~i~~y~ 186 (186)
++|+|+.+|+|+||+|.+||
T Consensus 157 ~~l~f~~~g~i~Ga~i~~yL 176 (717)
T cd01382 157 VEIHFNEKNSVVGGFVSHYL 176 (717)
T ss_pred EEEEECCCCCEeEEEEEEEe
Confidence 99999999999999999996
No 10
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.5e-58 Score=428.78 Aligned_cols=172 Identities=33% Similarity=0.518 Sum_probs=162.5
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111 13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR 92 (186)
Q Consensus 13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~ 92 (186)
+|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++...++|||||++|+.||+.|+
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEEc
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f~ 172 (186)
..+++||||++|||||||||++|.+++||+ ..++..... ...++|.+++|||||||||||.+|+||||||||++|+|+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla-~~~~~~~~~-~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~ 159 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLA-LAAGSVDGR-VSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFD 159 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHH-hccCCCCcc-cHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEEC
Confidence 999999999999999999999999999999 776543222 223689999999999999999999999999999999999
Q ss_pred CCCCeeeeEecccC
Q psy18111 173 YKGDPLGAHITNCK 186 (186)
Q Consensus 173 ~~g~i~ga~i~~y~ 186 (186)
.+|.|+||+|.+||
T Consensus 160 ~~g~i~Ga~i~~yL 173 (767)
T cd01386 160 QTGQIASASLQTML 173 (767)
T ss_pred CCCcEeEEEEEEEe
Confidence 99999999999996
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.4e-58 Score=421.93 Aligned_cols=171 Identities=46% Similarity=0.758 Sum_probs=163.3
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
+++||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.|
T Consensus 2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m 81 (677)
T cd01387 2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKM 81 (677)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF 171 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f 171 (186)
+..+++||||++|||||||||++|.+++||+ ..++.+ ...++++|++++|||||||||||++|+||||||||++|+|
T Consensus 82 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~--~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f 158 (677)
T cd01387 82 LDAKQNQCVIISGESGSGKTEATKLILRYLA-AMNQGG--SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL 158 (677)
T ss_pred HhcCCCceEEEEcCCCCCeehHHHHHHHHHH-hhcCCC--cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEe
Confidence 9999999999999999999999999999999 665432 3468899999999999999999999999999999999999
Q ss_pred cCCCCeeeeEecccC
Q psy18111 172 DYKGDPLGAHITNCK 186 (186)
Q Consensus 172 ~~~g~i~ga~i~~y~ 186 (186)
+ +|.|+||+|.+||
T Consensus 159 ~-~g~i~Ga~i~~yL 172 (677)
T cd01387 159 E-GGVIVGAITSQYL 172 (677)
T ss_pred c-CCcEeEEEEEEEe
Confidence 6 7999999999996
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=9.5e-58 Score=419.47 Aligned_cols=173 Identities=41% Similarity=0.668 Sum_probs=162.8
Q ss_pred CCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111 7 VDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGS 86 (186)
Q Consensus 7 ~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~ 86 (186)
++...+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++. ..|||||++|++
T Consensus 4 p~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~ 81 (677)
T cd01383 4 PDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADT 81 (677)
T ss_pred cccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHH
Confidence 344568999999999999999999999999999999999999999999999999999999998754 469999999999
Q ss_pred HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY 166 (186)
Q Consensus 87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~ 166 (186)
||+.|+..+++||||++|||||||||++|.+++||+ ..++. ..++++|++++|||||||||||.+|+||||||||
T Consensus 82 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa-~~~~~----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~ 156 (677)
T cd01383 82 AYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLA-SLGGG----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKL 156 (677)
T ss_pred HHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHH-hhCCC----CcHHHHHHHHHHHHHHhhccccCCCCCcCcccee
Confidence 999999999999999999999999999999999999 66542 2688999999999999999999999999999999
Q ss_pred EEEEEcCCCCeeeeEecccC
Q psy18111 167 LDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 167 ~~l~f~~~g~i~ga~i~~y~ 186 (186)
++|+|+.+|+++||+|.+||
T Consensus 157 ~~l~f~~~g~i~ga~i~~yL 176 (677)
T cd01383 157 IEIHFSETGKISGAKIQTFL 176 (677)
T ss_pred EEEEECCCCcEEEEEEEEEe
Confidence 99999999999999999996
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.2e-57 Score=420.02 Aligned_cols=178 Identities=47% Similarity=0.788 Sum_probs=169.5
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHH
Q psy18111 8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSA 87 (186)
Q Consensus 8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a 87 (186)
....+++||+.|+++||++||++|++||.+++||||+|++||+||||+++++|+++++..|+++...++|||||++|++|
T Consensus 3 ~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~A 82 (677)
T smart00242 3 PKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNA 82 (677)
T ss_pred cccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111 88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL 167 (186)
Q Consensus 88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~ 167 (186)
|+.|+..+++||||++|||||||||++|.+++||+ ..+++......++++|.+++|||||||||||.+|+||||||||+
T Consensus 83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~ 161 (677)
T smart00242 83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLA-AVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI 161 (677)
T ss_pred HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHH-hhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence 99999999999999999999999999999999999 77665434567899999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEecccC
Q psy18111 168 DIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 168 ~l~f~~~g~i~ga~i~~y~ 186 (186)
+|+|+.+|+|+||+|.+||
T Consensus 162 ~l~f~~~g~i~ga~i~~yL 180 (677)
T smart00242 162 EIHFDAKGKIVGAKIETYL 180 (677)
T ss_pred EEEECCCCcEeEEEEEEee
Confidence 9999999999999999996
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.7e-57 Score=418.04 Aligned_cols=172 Identities=46% Similarity=0.779 Sum_probs=165.3
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++...++|||||++|++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF 171 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f 171 (186)
+..+++||||++|||||||||++|.+++||+ ..++.. ...++++|.+++|||||||||||.+|+||||||||++|+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~--~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f 157 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLA-SLAGSN--DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQF 157 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHH-hccCCC--cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEE
Confidence 9999999999999999999999999999999 766532 3568999999999999999999999999999999999999
Q ss_pred cCCCCeeeeEecccC
Q psy18111 172 DYKGDPLGAHITNCK 186 (186)
Q Consensus 172 ~~~g~i~ga~i~~y~ 186 (186)
+.+|+|+||+|.+||
T Consensus 158 ~~~g~i~ga~i~~yL 172 (679)
T cd00124 158 DETGKISGAKITTYL 172 (679)
T ss_pred CCCCcEeEEEEEEEE
Confidence 999999999999996
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.3e-57 Score=414.54 Aligned_cols=171 Identities=43% Similarity=0.737 Sum_probs=163.5
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111 13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR 92 (186)
Q Consensus 13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~ 92 (186)
+|||+.|+++||++||++|+.||..++||||+|++||+||||+.+++|+++++..|+++.+.+.|||+|++|+.||+.|+
T Consensus 2 ~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~ 81 (653)
T cd01379 2 MDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLV 81 (653)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEEc
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f~ 172 (186)
..+++|||+++|||||||||++|.+++||+ ..++. ....++++|++++|||||||||||.+|+||||||||++|+|+
T Consensus 82 ~~~~~QsIiisGESGsGKTet~K~l~~yL~-~~~~~--~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~ 158 (653)
T cd01379 82 TYNQDQCIVISGESGSGKTESAHLLVQQLT-VLGKA--NNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFT 158 (653)
T ss_pred hcCCCceEEEecCCCCCchHHHHHHHHHHH-HhcCC--CCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEEC
Confidence 999999999999999999999999999999 55432 234688999999999999999999999999999999999999
Q ss_pred CCCCeeeeEecccC
Q psy18111 173 YKGDPLGAHITNCK 186 (186)
Q Consensus 173 ~~g~i~ga~i~~y~ 186 (186)
.+|+|+||+|++||
T Consensus 159 ~~g~i~Ga~i~~yL 172 (653)
T cd01379 159 RSGAVVGARISEYL 172 (653)
T ss_pred CCCcEEEEEEEEEe
Confidence 99999999999996
No 16
>KOG0164|consensus
Probab=100.00 E-value=1.2e-57 Score=406.80 Aligned_cols=182 Identities=52% Similarity=0.909 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHh
Q psy18111 4 PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAI 83 (186)
Q Consensus 4 ~~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~ 83 (186)
++..++..|++|++.|+.+++++++.|||.||+++.||||+|+++|+||||+.++||+++++.+|++....+.|||+|++
T Consensus 1 ~~~~~~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAi 80 (1001)
T KOG0164|consen 1 ALTARDEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAI 80 (1001)
T ss_pred CCccccccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCc--hhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111 84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV--LNAVREKLKHIGPLLEAFGNAQTLKNDNSS 161 (186)
Q Consensus 84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~--~~~~~~~i~~~~~iLeaFgnakT~~N~nSS 161 (186)
|+.||+.|.+..++|||+|||||||||||++|.||+|++ .+++.+.. ...+++.++++|+||||||||||.+|+|||
T Consensus 81 ad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiA-Avtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSS 159 (1001)
T KOG0164|consen 81 ADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIA-AVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSS 159 (1001)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHH-HhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchh
Confidence 999999999999999999999999999999999999999 77765443 478899999999999999999999999999
Q ss_pred CceeeEEEEEcCCCCeeeeEecccC
Q psy18111 162 RFGKYLDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 162 R~gk~~~l~f~~~g~i~ga~i~~y~ 186 (186)
||||||+|+||.+|..+||+|.+||
T Consensus 160 RFGKYMDInFDfKGdPvGG~I~nYL 184 (1001)
T KOG0164|consen 160 RFGKYMDINFDFKGDPVGGHITNYL 184 (1001)
T ss_pred hhhcceeeeccccCCcccchHhHHH
Confidence 9999999999999999999999996
No 17
>KOG0161|consensus
Probab=100.00 E-value=1.7e-57 Score=443.71 Aligned_cols=174 Identities=41% Similarity=0.707 Sum_probs=166.3
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL 91 (186)
Q Consensus 12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~ 91 (186)
.+|||+.|++|||++|||||++||.+++||||.|.+||+||||+++|+|+++++..|+++++.++|||||+||+.||+.|
T Consensus 83 k~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~m 162 (1930)
T KOG0161|consen 83 KVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNM 162 (1930)
T ss_pred ccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC----CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG----PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL 167 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~----~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~ 167 (186)
+..++||+|+++||||||||+++|+|++||+ .+++.+ +....++++|.++||||||||||+|++|+|||||||||
T Consensus 163 L~~renQSiLiTGESGAGKTeNTKkVIqyla-~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfi 241 (1930)
T KOG0161|consen 163 LQDRENQSILITGESGAGKTENTKKVIQYLA-SVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFI 241 (1930)
T ss_pred HhcCCCceEeeecCCCCCcchhHHHHHHHHH-HHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeE
Confidence 9999999999999999999999999999999 766532 11157889999999999999999999999999999999
Q ss_pred EEEEcCCCCeeeeEecccC
Q psy18111 168 DIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 168 ~l~f~~~g~i~ga~i~~y~ 186 (186)
+|+|+.+|+|+||+|++||
T Consensus 242 rI~F~~~G~i~~a~Ie~yL 260 (1930)
T KOG0161|consen 242 RIHFDATGKIAGADIETYL 260 (1930)
T ss_pred EEecCCCCccchhhHHHHH
Confidence 9999999999999999996
No 18
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=5.7e-57 Score=417.13 Aligned_cols=173 Identities=45% Similarity=0.790 Sum_probs=156.4
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111 13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR 92 (186)
Q Consensus 13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~ 92 (186)
||||+.|.++||++||++|++||..++||||+|++||+||||+++|+|+++++..|+++...++|||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--chhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEE
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIE 170 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~ 170 (186)
+.+++||||++|||||||||++|++++||+ ..+.... ....+.++|+++++||||||||||.+|+||||||||++|+
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~-~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~ 159 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLA-SLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ 159 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHH-HHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHh-hhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence 999999999999999999999999999999 7665433 4567899999999999999999999999999999999999
Q ss_pred EcCCCCeeeeEecccC
Q psy18111 171 FDYKGDPLGAHITNCK 186 (186)
Q Consensus 171 f~~~g~i~ga~i~~y~ 186 (186)
|+.+|.++||+|++|+
T Consensus 160 f~~~~~~~g~~i~~yl 175 (689)
T PF00063_consen 160 FDDSGQIVGAKIETYL 175 (689)
T ss_dssp EETTSSEEEEEEEEEE
T ss_pred ecccccccccceeccc
Confidence 9999999999999985
No 19
>KOG0162|consensus
Probab=100.00 E-value=2.3e-55 Score=392.62 Aligned_cols=177 Identities=42% Similarity=0.768 Sum_probs=173.2
Q ss_pred CCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHH
Q psy18111 9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAY 88 (186)
Q Consensus 9 ~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~ 88 (186)
..++++||+.|+.++|++|..||+.||+++.||||+|.+||+||||+++|+|+++.+..|++....+.|||||++|++.|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168 (186)
Q Consensus 89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~ 168 (186)
++|...+++||||||||||+|||+++|.||+|++ .+++.+.+.+.+++-|+++||+|||||||||++|+||||||||++
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs-~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E 174 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYIS-RVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE 174 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHH-HhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence 9999999999999999999999999999999999 888888889999999999999999999999999999999999999
Q ss_pred EEEcCCCCeeeeEecccC
Q psy18111 169 IEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 169 l~f~~~g~i~ga~i~~y~ 186 (186)
|+|+..|..+||+|.+||
T Consensus 175 i~Fs~ggeP~ggkisNfL 192 (1106)
T KOG0162|consen 175 IQFSRGGEPDGGKISNFL 192 (1106)
T ss_pred EEecCCCCcCcchhhHHH
Confidence 999999999999999996
No 20
>KOG0163|consensus
Probab=100.00 E-value=2.2e-53 Score=380.88 Aligned_cols=178 Identities=44% Similarity=0.739 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHh
Q psy18111 5 LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAI 83 (186)
Q Consensus 5 ~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~ 83 (186)
-+.|.+..+||=|.|-+|||+.+|+|++-||.++.||||+.++||+||||+.++ +|+++.+..|+++..+.+|||||+|
T Consensus 51 ~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAI 130 (1259)
T KOG0163|consen 51 CEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAI 130 (1259)
T ss_pred cccccccccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeee
Confidence 356778899999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCc
Q psy18111 84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRF 163 (186)
Q Consensus 84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~ 163 (186)
|+.||+.|...+.+|+||+|||||+||||+.|.+++||+ ..-| ....|.++|+.+||||||||||||.+|+|||||
T Consensus 131 ADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLc-es~g---sag~Iq~rileaNPiLEAFGNAKT~RNNNSSRF 206 (1259)
T KOG0163|consen 131 ADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLC-ESWG---SAGPIQTRILEANPILEAFGNAKTLRNNNSSRF 206 (1259)
T ss_pred chHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHH-hccC---CCCcHHHHHhccChHHHHhccchhhccCChhhc
Confidence 999999999999999999999999999999999999999 3322 256789999999999999999999999999999
Q ss_pred eeeEEEEEcCCCCeeeeEecccC
Q psy18111 164 GKYLDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 164 gk~~~l~f~~~g~i~ga~i~~y~ 186 (186)
|||++|||+.+|.++||-|.+||
T Consensus 207 GKFveiHf~dk~~VvGGyvSHYL 229 (1259)
T KOG0163|consen 207 GKFVEIHFDDKGQVVGGYVSHYL 229 (1259)
T ss_pred cceEEEEEcCCCceechhhhHHH
Confidence 99999999999999999999996
No 21
>KOG0160|consensus
Probab=100.00 E-value=1.7e-47 Score=353.00 Aligned_cols=173 Identities=42% Similarity=0.671 Sum_probs=166.4
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111 11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGSAYR 89 (186)
Q Consensus 11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~ 89 (186)
++++||..|++++|++||++|+.||..+.||||.|.+||+||||+.+| +|+++.+..|+ ....++.||+|++|+.||+
T Consensus 8 ~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~ 86 (862)
T KOG0160|consen 8 MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYR 86 (862)
T ss_pred CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHH
Confidence 789999999999999999999999999999999999999999999999 99999999999 7788999999999999999
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEE
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDI 169 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l 169 (186)
.|.....+|+||++||||||||+++|.+++||+ .+.+. .....++++++++|||+||||||||.+|+||||||||++|
T Consensus 87 ~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla-~v~~~-~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei 164 (862)
T KOG0160|consen 87 DMTPDGVNQSIIVSGESGAGKTETAKYLMEYLA-SVGGS-VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEI 164 (862)
T ss_pred HhhhccCCceeeeeCCCCCchhHHHHHHHHHHH-HHhcc-chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHH
Confidence 999999999999999999999999999999999 77665 3456899999999999999999999999999999999999
Q ss_pred EEcCCCCeeeeEecccC
Q psy18111 170 EFDYKGDPLGAHITNCK 186 (186)
Q Consensus 170 ~f~~~g~i~ga~i~~y~ 186 (186)
+|+..|+|.||+|.+||
T Consensus 165 ~Fd~~~~I~GA~~~TYL 181 (862)
T KOG0160|consen 165 TFDQQGRISGAKIRTYL 181 (862)
T ss_pred hhhhhcccccceeeeEE
Confidence 99999999999999996
No 22
>KOG4229|consensus
Probab=100.00 E-value=2.5e-39 Score=304.78 Aligned_cols=176 Identities=42% Similarity=0.683 Sum_probs=166.8
Q ss_pred CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111 8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGS 86 (186)
Q Consensus 8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~ 86 (186)
....+++||+.|..++|+.++.+|..||..+.||||.|.+|++||||+.++ +|..+....|.+..+++.|||||++|+.
T Consensus 58 ~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~ 137 (1062)
T KOG4229|consen 58 PQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADL 137 (1062)
T ss_pred cccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhh
Confidence 345689999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY 166 (186)
Q Consensus 87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~ 166 (186)
||++|++...+|||+++||||||||+.+++++++|+ .++. .....++.+|+.++++||+||||+|.+|+||||||||
T Consensus 138 ~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls-~Lsq--~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~ 214 (1062)
T KOG4229|consen 138 AYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLS-ILSQ--GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY 214 (1062)
T ss_pred HHHhhhhhccceeEEEecccCCCCchhhHHHHHHHH-HHhc--CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence 999999999999999999999999999999999999 7762 2345678899999999999999999999999999999
Q ss_pred EEEEEcCCCCeeeeEecccC
Q psy18111 167 LDIEFDYKGDPLGAHITNCK 186 (186)
Q Consensus 167 ~~l~f~~~g~i~ga~i~~y~ 186 (186)
+++.|..+|.+.||+|+.||
T Consensus 215 i~~~~~~~g~i~Gaki~~yl 234 (1062)
T KOG4229|consen 215 IKVNFRKTGIIEGAKIVEYL 234 (1062)
T ss_pred EEeccccCCCCCcchHHHHH
Confidence 99999999999999999885
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.86 E-value=3.4e-09 Score=83.81 Aligned_cols=88 Identities=25% Similarity=0.288 Sum_probs=63.9
Q ss_pred HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhc-CccccCCC
Q psy18111 80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFG-NAQTLKND 158 (186)
Q Consensus 80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFg-nakT~~N~ 158 (186)
||.....++..++ .+.++||+..|++|||||++..--. ...+ -.....+.+.+.....+++. ++.|..|.
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~G-iip~~~~~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAG-IIPRTVTDVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCC-cchHHHHHHHHHHhhccccccccccCCCC
Confidence 7887778888887 4699999999999999998732100 0000 11122223566666777888 89999999
Q ss_pred CCCCceeeEEEEEcCCCC
Q psy18111 159 NSSRFGKYLDIEFDYKGD 176 (186)
Q Consensus 159 nSSR~gk~~~l~f~~~g~ 176 (186)
+|||+..+++|++.....
T Consensus 79 ~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred ccCcccEEEEEEEEEeec
Confidence 999999999999976443
No 24
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.07 E-value=0.00049 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+|+|.+|||||+.++.+.+.+-
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999999754
No 25
>KOG0925|consensus
Probab=96.92 E-value=0.0011 Score=59.70 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=42.3
Q ss_pred eCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHH-HHHHHH
Q psy18111 51 VNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA-SMVVYF 120 (186)
Q Consensus 51 vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~-k~il~~ 120 (186)
+|||...| |++...+.++. +.++|-+-+ -+.-|-.-.++|+||+.||+|||||+-. +-++.|
T Consensus 24 ~Npf~~~p-~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~ 86 (699)
T KOG0925|consen 24 INPFNGKP-YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY 86 (699)
T ss_pred cCCCCCCc-CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH
Confidence 99999887 67766665543 335554433 2334555679999999999999999744 444444
No 26
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.69 E-value=0.0014 Score=47.76 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++..++++.|++|+|||..++.+.+-+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3567899999999999999999999876
No 27
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.69 E-value=0.0031 Score=45.51 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.3
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
......+++.|++|+|||+.++.+.+.+.
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 33567899999999999999999999874
No 28
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.66 E-value=0.0015 Score=47.10 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 29
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.57 E-value=0.002 Score=49.89 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|+|.|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999888654
No 30
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.49 E-value=0.0028 Score=41.91 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|.++|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999986
No 31
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0021 Score=54.84 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.+.+-|.||||||||++++.+++.+.
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4778999999999999999999999886
No 32
>PRK06762 hypothetical protein; Provisional
Probab=96.44 E-value=0.0031 Score=48.22 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.8
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
+..|+++|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999887
No 33
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.43 E-value=0.0033 Score=50.08 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
.+...|.|+|.||||||+.++.+.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 34
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.42 E-value=0.0026 Score=45.31 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=24.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+++.|.+|+|||+.++.+.+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 57899999999999999999999877
No 35
>PRK07261 topology modulation protein; Provisional
Probab=96.39 E-value=0.0029 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.7
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|++.|.+|||||+.++.+.+.+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999987653
No 36
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.39 E-value=0.0023 Score=49.10 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=21.1
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....++.+++.|++|+|||...+.+++.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445678899999999999999999999888
No 37
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.37 E-value=0.003 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.|++.|.||||||+.++.+.+.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999999976
No 38
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.33 E-value=0.003 Score=48.86 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++..|++.|.+|||||+.++.+.+.|.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999886
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.32 E-value=0.0034 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|++.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999876
No 40
>PRK08118 topology modulation protein; Reviewed
Probab=96.30 E-value=0.0037 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|++.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998765
No 41
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.30 E-value=0.0041 Score=49.62 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+...|.|+|.||||||+.++.+.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567788999999999999999998775
No 42
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0027 Score=53.06 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+...+-+.||||||||+..|.+++.+- ..+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE-PTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCc
Confidence 4788999999999999999999999877 5555
No 43
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0071 Score=48.85 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.6
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++-.|.|+|.||||||+.++.+.+.|.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44667899999999999999999999885
No 44
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.26 E-value=0.0044 Score=47.19 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+++.|++.|.+|||||+.++.+-+.+-
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998764
No 45
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.22 E-value=0.0045 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il 118 (186)
...+.++|.|+||||||+.++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 355889999999999999999876
No 46
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.19 E-value=0.0057 Score=47.28 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=23.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+-.|.|+|.||||||+.++.+-+.|.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987
No 47
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.19 E-value=0.0039 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.|+|.||||||+.++.+...|.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999987
No 48
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.19 E-value=0.0051 Score=47.71 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.|+++|.||||||+.++.+.+-+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999988653
No 49
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.16 E-value=0.012 Score=44.36 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.....|++.|+.|+|||+.+|.+.+.|.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999876
No 50
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.09 E-value=0.0049 Score=48.61 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|.|+|.+|||||+.++.+.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999986
No 51
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0042 Score=51.27 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+++-|.||||||||+.++.++.+.. ..+|
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G 62 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEK-PSSG 62 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCc
Confidence 5889999999999999999999999876 4443
No 52
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.07 E-value=0.0071 Score=46.71 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+...|++.|.+|||||+.++.+.+.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999885
No 53
>PRK08233 hypothetical protein; Provisional
Probab=96.05 E-value=0.0057 Score=47.08 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|.++|.+|||||+.++.+.+.|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999875
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.03 E-value=0.014 Score=46.59 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+........|++.|++|+|||+.++.+.+++.
T Consensus 29 l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33433356677899999999999999999998765
No 55
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.00 E-value=0.0062 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=22.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+++|.+|||||+..+.+++++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999886
No 56
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.96 E-value=0.0065 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+++|++|||||+.++.+.+.+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 57
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.95 E-value=0.012 Score=48.18 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.....+++.|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455799999999999999999988754
No 58
>PRK06547 hypothetical protein; Provisional
Probab=95.94 E-value=0.015 Score=45.48 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=25.3
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.......|++.|.||||||+.++.+.+.+-
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356777899999999999999999988644
No 59
>PTZ00301 uridine kinase; Provisional
Probab=95.94 E-value=0.0065 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l 121 (186)
-|.|+|.||||||+.++.+.+.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 47789999999999999988766
No 60
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.93 E-value=0.0053 Score=48.11 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.|+|.|.||||||+..+.+...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999977643
No 61
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.88 E-value=0.0066 Score=46.24 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+++|++|||||+.++.+.+.+-
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999987544
No 62
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.88 E-value=0.0057 Score=45.16 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999997653
No 63
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.88 E-value=0.018 Score=46.65 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=26.1
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++..|.|.|.+|||||+.++.+.+.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36677899999999999999999999887
No 64
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.87 E-value=0.0055 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|++.|.+|||||+.++.+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5699999999999999999998653
No 65
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.86 E-value=0.007 Score=47.52 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|++|||||+..+.++.++.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999988765
No 66
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.85 E-value=0.0088 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
....|+|+|+||+|||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999877774
No 67
>PRK06217 hypothetical protein; Validated
Probab=95.82 E-value=0.008 Score=46.99 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.2
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|+|+|-+|||||+.++.+-+.+-
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999998765
No 68
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.80 E-value=0.0058 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|++.|.+|||||+.++.+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999998764
No 69
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.79 E-value=0.011 Score=46.87 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++..|+++|.+|||||+.++.+.+.|.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999999875
No 70
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.77 E-value=0.022 Score=46.54 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+....+...+++.|++|+|||+.++.+.+.+.
T Consensus 34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444455667899999999999999998888766
No 71
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.77 E-value=0.014 Score=50.26 Aligned_cols=33 Identities=39% Similarity=0.440 Sum_probs=26.4
Q ss_pred HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.+...+. .|+++|.+|||||+..+.++.++.
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444444 599999999999999999999875
No 72
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.77 E-value=0.0088 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+|+|+.|+|||+..+.+++.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999995
No 73
>PF05729 NACHT: NACHT domain
Probab=95.76 E-value=0.01 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++|.|+.|+|||+.++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 478999999999999999999888
No 74
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.75 E-value=0.0088 Score=46.86 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.++|.||||||+.++.+.+.+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999875
No 75
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.75 E-value=0.0083 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|-|.|.+|||||+.++.+...|.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999885
No 76
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.73 E-value=0.015 Score=48.43 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.7
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-.|+++|++|||||++.+.++.++.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 4699999999999999999999876
No 77
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.69 E-value=0.0076 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+|+|.||||||+.++.+.+.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999754
No 78
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.66 E-value=0.01 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999884
No 79
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.66 E-value=0.025 Score=47.91 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.+..|.|.|.+|||||+.++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567788999999999999988877665
No 80
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.63 E-value=0.012 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.6
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++.|.||+|||++++.+.+++.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999988
No 81
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.021 Score=45.22 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-....++-.|-|+|-||||||+.+..+-+-|.
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 34455667899999999999999999999887
No 82
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.012 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
+..-||++|.||+|||+..|.+++-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999999865
No 83
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.57 E-value=0.012 Score=47.16 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
..+..|||+|.||+|||+.++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46778999999999999999998764
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.53 E-value=0.027 Score=47.67 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...........+++.|++|+|||+.++.+.+.+.
T Consensus 28 ~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 28 SRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344444545799999999999999999999876
No 85
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.52 E-value=0.016 Score=52.87 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=38.2
Q ss_pred HHHhcCCCCCCCchHHHhHH--HHHHHHHhhC-CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 66 RAYRTRGPFQLPPHIFAIAG--SAYRWLRDRS-EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 66 ~~y~~~~~~~~~PHi~~~a~--~a~~~~~~~~-~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+|+-....++.-|-=.+.+ .+++.+.... ..+.++++|.+|+|||++.+.+.+.+.
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45555555555555444443 4555554443 356788899999999999999998766
No 86
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.52 E-value=0.016 Score=44.96 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
-+++.++|+|.||+|||+..+.++...
T Consensus 33 l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 33 LKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999999988888753
No 87
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.0096 Score=51.11 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.||||||||+.++.|+..+. ..+|
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G 70 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIET-PTGG 70 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCc
Confidence 4778999999999999999999999766 4333
No 88
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.46 E-value=0.015 Score=46.01 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+-.|||+|.||||||+.++.+++.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456799999999999999999988653
No 89
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.45 E-value=0.015 Score=45.56 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+++.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999998765
No 90
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.44 E-value=0.012 Score=49.35 Aligned_cols=31 Identities=39% Similarity=0.631 Sum_probs=26.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
+...+++.|.||||||++.|+|-+.+. ..+|
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLie-pt~G 56 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIE-PTSG 56 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC-CCCc
Confidence 445689999999999999999999877 5555
No 91
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.44 E-value=0.013 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..|++.|.+|||||+.++.+.+.+-
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999986543
No 92
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.42 E-value=0.0095 Score=53.96 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.|.+.+.|+||||||+..+.+++++. ...|
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G 390 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD-PLQG 390 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 6889999999999999999999999876 4433
No 93
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.41 E-value=0.015 Score=45.25 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.+.|++.|.+|||||+.++.+.+.+.
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 356799999999999999999988654
No 94
>PRK14527 adenylate kinase; Provisional
Probab=95.38 E-value=0.015 Score=45.74 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++.|++.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999886543
No 95
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.37 E-value=0.011 Score=52.32 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=27.4
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.-++.|++-+.||||||||+..+.+++.+.
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~ 338 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIP 338 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcC
Confidence 446899999999999999999999999877
No 96
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.37 E-value=0.012 Score=47.20 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4678999999999999999999998765
No 97
>PRK04040 adenylate kinase; Provisional
Probab=95.36 E-value=0.016 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.5
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...|+++|.+|+|||+.++.+.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998887
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.012 Score=47.56 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.|.|++|||||+..+.+...+. ..+|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G 60 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER-PTSG 60 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 4788999999999999999999998766 4444
No 99
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.34 E-value=0.023 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.3
Q ss_pred HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.......++.++|+|++|+|||..++.+++.+.
T Consensus 32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 32 RPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334456778999999999999999999998875
No 100
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.34 E-value=0.014 Score=41.77 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHhh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
|.|.|++|.|||..++.+.+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999998883
No 101
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.34 E-value=0.013 Score=43.88 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.8
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|+++|.+|||||+.++.+.+.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988863
No 102
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.012 Score=50.60 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|+||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4788999999999999999999999764
No 103
>PF12846 AAA_10: AAA-like domain
Probab=95.33 E-value=0.016 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.2
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|..+++.|.+|+|||+.++.++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999998877
No 104
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.33 E-value=0.013 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.6
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|.++|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999987
No 105
>PF13245 AAA_19: Part of AAA domain
Probab=95.32 E-value=0.029 Score=37.91 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++...++.|..|+|||++....+.++.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 566778899999999977777777666
No 106
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.32 E-value=0.021 Score=47.21 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+....|+++|+.|||||+..+.+++++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccceEEEEECCCccccchHHHHHhhhcc
Confidence 4577899999999999999999999877
No 107
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.32 E-value=0.016 Score=46.61 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.|...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477899999999999999999999987
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=95.30 E-value=0.028 Score=47.87 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.+...++-..++|.|.+|+|||+.++.+.+.+.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 345556666667799999999999999999999875
No 109
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.30 E-value=0.015 Score=45.67 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.-.|.+.|.||||||+..+.+++.|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 34688999999999999999999987
No 110
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.30 E-value=0.012 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 111
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.29 E-value=0.039 Score=40.99 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+....|++.|+-|||||+.+|.+++.|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5678899999999999999999999886
No 112
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.28 E-value=0.015 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+++|.+|||||+.++.+-+.+-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988754
No 113
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.28 E-value=0.019 Score=49.65 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|.+|||||++.+.+++++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 356799999999999999999999876
No 114
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.28 E-value=0.012 Score=46.82 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 115
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.27 E-value=0.011 Score=53.88 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.+++-|.||||||||+.+|.++..+.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5778899999999999999999999876
No 116
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.26 E-value=0.012 Score=50.74 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|+||||||+..+.|+..+. ..+|
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G 76 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK-ATDG 76 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCc
Confidence 5788999999999999999999999776 4444
No 117
>PRK04182 cytidylate kinase; Provisional
Probab=95.26 E-value=0.016 Score=44.38 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+|+|.+|||||+.++.+.+.|-
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987544
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.26 E-value=0.014 Score=46.41 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999998765
No 119
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.013 Score=46.67 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 120
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.25 E-value=0.015 Score=42.69 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3678899999999999999998888765
No 121
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.24 E-value=0.025 Score=48.80 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|+++|.+|||||+..+.++.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34599999999999999999998766
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.24 E-value=0.041 Score=44.23 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.....+++.|++|+|||+.++.+.+.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999988764
No 123
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.23 E-value=0.029 Score=47.30 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+-+..+++.|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3456677799999999999999988653
No 124
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.012 Score=47.19 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988654
No 125
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.22 E-value=0.012 Score=50.61 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=25.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.||||||||+..+.|+..+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4788999999999999999999999875
No 126
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.22 E-value=0.017 Score=42.69 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|++.|++|+|||+.++.+.+.+-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998764
No 127
>PLN02165 adenylate isopentenyltransferase
Probab=95.22 E-value=0.016 Score=50.12 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=26.8
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|........|+|.|.+|||||+.+..+.+.+-
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 55666777899999999999999999888754
No 128
>PRK14531 adenylate kinase; Provisional
Probab=95.21 E-value=0.019 Score=44.87 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.|++.|.+|||||+.++.+.+.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988764
No 129
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.21 E-value=0.013 Score=46.69 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4778999999999999999999998765
No 130
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.20 E-value=0.018 Score=45.06 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999888654
No 131
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.20 E-value=0.013 Score=46.78 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999998765
No 132
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.20 E-value=0.013 Score=50.23 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.||||||||+.++.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4778999999999999999999999764
No 133
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.053 Score=47.16 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=37.7
Q ss_pred HHHHhcCCCCCCC--chHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 65 ARAYRTRGPFQLP--PHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 65 ~~~y~~~~~~~~~--PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+|+.....++- +|+- +.+.+++.. +-+++++|+|+.|+|||+.++.+.+.+.
T Consensus 7 ~~kyrP~~~~~iiGq~~~~----~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIV----TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred HHHhCCCchhhccChHHHH----HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4566655544443 3433 234454444 5678899999999999999999999885
No 134
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.19 E-value=0.019 Score=42.54 Aligned_cols=23 Identities=48% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+++.|++|+|||+.++.++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999887
No 135
>PRK03839 putative kinase; Provisional
Probab=95.18 E-value=0.018 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|++.|.+|||||+.++.+.+.+-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988754
No 136
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.18 E-value=0.017 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
.+.|+++|.+|||||+.++.+.+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 3679999999999999999999876
No 137
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.15 E-value=0.016 Score=53.11 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.|.+.|.|+||||||+..+.++..+. ..+|
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G 398 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD-IDEG 398 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC-CCCc
Confidence 5789999999999999999999999876 4443
No 138
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.15 E-value=0.023 Score=49.58 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|++|||||++.+.+++++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999986
No 139
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.018 Score=46.85 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|.+.|-||||||+.++.+.+.|-
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 466799999999999999999887
No 140
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.11 E-value=0.019 Score=48.74 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|+++|.+|||||+..+.+++++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999999999886
No 141
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.10 E-value=0.015 Score=47.13 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5788999999999999999999988665
No 142
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.019 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+|.|.|||||||.++.+.+.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999754
No 143
>PRK06893 DNA replication initiation factor; Validated
Probab=95.07 E-value=0.05 Score=44.17 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=25.3
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....+.++++.|.+|+|||+.+..+.+.+.
T Consensus 35 ~~~~~~~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 35 IDLQQPFFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566789999999999999999998765
No 144
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.04 E-value=0.017 Score=48.70 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.0
Q ss_pred eEEEecCCCCCchhHHHHHHH
Q psy18111 98 QCIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il 118 (186)
+.||++|.||||||+..+.+-
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lE 22 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALE 22 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHH
Confidence 568999999999999987654
No 145
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.03 E-value=0.02 Score=44.32 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|++.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988655
No 146
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.03 E-value=0.016 Score=46.34 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999998887654
No 147
>PRK12377 putative replication protein; Provisional
Probab=95.01 E-value=0.055 Score=44.86 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=30.6
Q ss_pred hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+++..+..-..... . ..+.++|+|.+|+|||+.+..|.+.+.
T Consensus 85 ~a~~~a~~~a~~~~-~-~~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 85 YALSQAKSIADELM-T-GCTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred HHHHHHHHHHHHHH-h-cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34544443333332 2 347899999999999999999999988
No 148
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.01 E-value=0.02 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+++|-+|||||+.++.+.+++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999885
No 149
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.01 E-value=0.021 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
.+.+.++|.|.||||||+..|.+-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3667899999999999998775544
No 150
>PRK07667 uridine kinase; Provisional
Probab=95.01 E-value=0.034 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=22.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|.|+|.+|||||+.++.+.+.|.
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999886
No 151
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.017 Score=46.77 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4778999999999999999999998765
No 152
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.01 E-value=0.015 Score=47.02 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778999999999999999999988655
No 153
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.01 E-value=0.016 Score=45.70 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3678899999999999999999998665
No 154
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.99 E-value=0.015 Score=54.91 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.|.|.|+|||||||.+|.+..++. ...|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 4778999999999999999999999877 5444
No 155
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.97 E-value=0.018 Score=45.72 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 156
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.018 Score=44.78 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999987655
No 157
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.95 E-value=0.017 Score=46.50 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G 55 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSG 55 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence 4778999999999999999999998765 4333
No 158
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.017 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988654
No 159
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.94 E-value=0.018 Score=45.69 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999988665
No 160
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.94 E-value=0.016 Score=46.13 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778999999999999999999888654
No 161
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.92 E-value=0.017 Score=52.77 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=26.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+-|.||||||||++++.++.++.
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~ 60 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLP 60 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999999988
No 162
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.90 E-value=0.052 Score=45.70 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=26.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.+|.+.|+.|||||+..+.+.+.|-
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999988
No 163
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.018 Score=46.07 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.|...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778899999999999999999988654
No 164
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.89 E-value=0.022 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.--|+++|.+|||||++.+.+++++.
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999987
No 165
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.89 E-value=0.018 Score=46.59 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999999988765
No 166
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.89 E-value=0.019 Score=46.29 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988665
No 167
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.88 E-value=0.019 Score=45.73 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4778999999999999999999988654
No 168
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.87 E-value=0.021 Score=44.00 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988765
No 169
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.87 E-value=0.018 Score=45.53 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988655
No 170
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.86 E-value=0.051 Score=45.52 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+..........++|.|+.|+|||+.++.+.+.+.
T Consensus 28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444444445689999999999999999998765
No 171
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.86 E-value=0.018 Score=46.63 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4778999999999999999999987654
No 172
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.86 E-value=0.028 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.6
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|.++|.+|||||+.++.++++|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998
No 173
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.86 E-value=0.045 Score=42.59 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+..-.|+++|.+|||||+.++.+.+.+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999875
No 174
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.85 E-value=0.027 Score=43.95 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.4
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.-|||+|.||+||++.++.+++.+.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 5699999999999999999998654
No 175
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.83 E-value=0.025 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il 118 (186)
...+++.+.|+||||||+.++.++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 578899999999999999964333
No 176
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.027 Score=44.74 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678899999999999999999998654
No 177
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.78 E-value=0.043 Score=47.68 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
......++.++++|.+|+|||..++.+++.+.
T Consensus 49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456678899999999999999999999875
No 178
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.026 Score=44.07 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|.++|.+|||||+.++.+-+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 388999999999999999999877
No 179
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.76 E-value=0.034 Score=50.26 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCCeEEEecCCCCCchhHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAAS 115 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k 115 (186)
.+.+.|.|+|+||||||+..+
T Consensus 30 ~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 30 PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred cCCCEEEEECCCCCCHHHHHh
Confidence 688999999999999999998
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.02 Score=48.00 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 181
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.019 Score=46.37 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999998765
No 182
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.74 E-value=0.022 Score=45.33 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999998654
No 183
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.73 E-value=0.023 Score=45.76 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5789999999999999999999988654
No 184
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.73 E-value=0.02 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|.+|||||+..+.+++++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 445699999999999999999998765
No 185
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.021 Score=45.56 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+ +.+.|.|++|||||+..+.+...+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 46 8999999999999999999988765
No 186
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.72 E-value=0.022 Score=45.77 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4778999999999999999999998765
No 187
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.72 E-value=0.021 Score=46.40 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988654
No 188
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.72 E-value=0.021 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999998765
No 189
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.72 E-value=0.022 Score=44.70 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+...+.+.|++|||||+..+.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4678899999999999999999988765
No 190
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.021 Score=44.11 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999998877654
No 191
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.71 E-value=0.036 Score=43.44 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.5
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+-.|+|.|..|||||+.++.+.+.|.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999874
No 192
>PRK10908 cell division protein FtsE; Provisional
Probab=94.71 E-value=0.02 Score=45.84 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988655
No 193
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.70 E-value=0.022 Score=45.47 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999988655
No 194
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.022 Score=46.94 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999998664
No 195
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.69 E-value=0.031 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il 118 (186)
.+.+.+.+.|++|||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467789999999999999998774
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.69 E-value=0.034 Score=44.37 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.|++.|.+|+|||+++-++-.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 46799999999999999888888877
No 197
>PRK08727 hypothetical protein; Validated
Probab=94.68 E-value=0.066 Score=43.62 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.9
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....+.|++.|.+|+|||+.+..+...+.
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557799999999999999999888776
No 198
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.65 E-value=0.027 Score=51.49 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=28.3
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
-++.+.+.+.|+||||||+..|.++..+. ...|
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G 395 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSG 395 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence 36889999999999999999999999876 4444
No 199
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.65 E-value=0.029 Score=45.90 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+...+.|.|+||||||+....+--...
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3667799999999999999877665544
No 200
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.62 E-value=0.09 Score=40.30 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...-.|+++|+=|||||+.+|-+++.|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 5667899999999999999999999888
No 201
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.62 E-value=0.023 Score=45.98 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999998654
No 202
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.026 Score=44.45 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3678999999999999999999988655
No 203
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.024 Score=44.89 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=26.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|++|||||+..+.+...+. ..+|
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G 56 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR-PDAG 56 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 3677899999999999999999998765 4333
No 204
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.60 E-value=0.023 Score=46.08 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999998765
No 205
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.59 E-value=0.044 Score=35.80 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=19.8
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+|+|++|||||+..-.+.-.|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 588999999999999877666555
No 206
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.59 E-value=0.025 Score=46.57 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 678899999999999999999988765
No 207
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.58 E-value=0.033 Score=43.02 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678899999999999999999988765
No 208
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.024 Score=47.09 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+++.|.|++|||||+..+.+...+.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988765
No 209
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.57 E-value=0.025 Score=45.12 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677899999999999999999998765
No 210
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.57 E-value=0.026 Score=45.23 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999998765
No 211
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.55 E-value=0.043 Score=49.76 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.1
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-.|+++|++|||||++.+.+++++.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3688999999999999998888765
No 212
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.55 E-value=0.033 Score=45.44 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4788999999999999999999988764
No 213
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.025 Score=44.94 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999988764
No 214
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.55 E-value=0.024 Score=45.40 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 215
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.54 E-value=0.024 Score=46.40 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999988765
No 216
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.54 E-value=0.024 Score=46.90 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3678999999999999999999998765
No 217
>PRK14528 adenylate kinase; Provisional
Probab=94.53 E-value=0.036 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHH
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
+.|++.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998755
No 218
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.53 E-value=0.03 Score=51.13 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
+..+.|.+.|+||||||+..+.++..+. ..+|
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G 387 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE-PDSG 387 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence 5789999999999999999999999876 4433
No 219
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.52 E-value=0.033 Score=45.13 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998864
No 220
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.033 Score=45.55 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477899999999999999999998754
No 221
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.50 E-value=0.038 Score=43.77 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=23.1
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...++..|++.|.+|||||+.+..++..+
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 34688899999999999999999999876
No 222
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.50 E-value=0.034 Score=45.39 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999988653
No 223
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.50 E-value=0.057 Score=47.71 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.......+++|.|++|+|||+.++.+.+.+.
T Consensus 25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4466667777778999999999999999999987654
No 224
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.50 E-value=0.029 Score=44.74 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|++|||||+..+.+...+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4788999999999999999999988654
No 225
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.50 E-value=0.026 Score=51.95 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.|.+.|+||||||+..+.++.++. ...|
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G 396 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP-LTEG 396 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC-CCCc
Confidence 5789999999999999999999999876 4433
No 226
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.49 E-value=0.026 Score=46.18 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.|.|++|||||+..+.+...+. ..+|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G 60 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGG 60 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcc
Confidence 4778999999999999999999998765 4444
No 227
>PRK13946 shikimate kinase; Provisional
Probab=94.49 E-value=0.038 Score=43.26 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|++.|.+|||||+.++.+-+.|-
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988764
No 228
>PF13173 AAA_14: AAA domain
Probab=94.48 E-value=0.045 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.+++.|..|+|||+.++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999998765
No 229
>PHA00729 NTP-binding motif containing protein
Probab=94.48 E-value=0.075 Score=43.50 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999988764
No 230
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.026 Score=44.01 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999888765
No 231
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.47 E-value=0.034 Score=44.90 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+++.|.|.+|||||+..+.+...+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 232
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.03 Score=45.00 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|.+.+.|++|||||+..+.+...+.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5778999999999999999999988765
No 233
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.43 E-value=0.039 Score=42.26 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|+++|.+|||||+.++.+-+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999998764
No 234
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.42 E-value=0.026 Score=52.83 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.+.+.|+||||||+..|.++.++. ..+|
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G 508 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFET-PESG 508 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence 5789999999999999999999999877 4444
No 235
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.41 E-value=0.028 Score=47.16 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G 62 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLK-PTTG 62 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 4789999999999999999999998765 4443
No 236
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.41 E-value=0.028 Score=44.83 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999998765
No 237
>PRK14530 adenylate kinase; Provisional
Probab=94.41 E-value=0.036 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999988665
No 238
>PRK13947 shikimate kinase; Provisional
Probab=94.41 E-value=0.037 Score=42.30 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|++.|.+|||||+.++.+-+-|-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999988654
No 239
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.40 E-value=0.033 Score=43.19 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G 57 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQG 57 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCC
Confidence 4778999999999999999999988655 4343
No 240
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.40 E-value=0.035 Score=43.99 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|++|+|||+..+.+...+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4788999999999999999999988765
No 241
>PLN02348 phosphoribulokinase
Probab=94.40 E-value=0.063 Score=47.38 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.-.|-|.|.||||||+.++.|.+.|-
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444677899999999999999999885
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.39 E-value=0.032 Score=45.14 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4788999999999999999999998765
No 243
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.029 Score=45.72 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999999988654
No 244
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.38 E-value=0.04 Score=43.42 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
..+.....+.+++.|..|+|||...+.+++.+
T Consensus 13 ~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 13 ELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 34455568999999999999999999999876
No 245
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.38 E-value=0.028 Score=51.65 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.|.+.|+||||||+..+.++.++. ...|
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G 390 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSG 390 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCC
Confidence 5788999999999999999999999877 4443
No 246
>KOG0924|consensus
Probab=94.37 E-value=0.032 Score=52.30 Aligned_cols=37 Identities=32% Similarity=0.573 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
||++.++- |..-++||.||+.||+|||||+- +-|||.
T Consensus 357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~ 393 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLY 393 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHH
Confidence 56655543 33447999999999999999984 566666
No 247
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.074 Score=48.14 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 88 YRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 88 ~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
++++... +-.++++|+|+.|.|||+.++.+.+.+.+
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444 44678999999999999999999998873
No 248
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=94.36 E-value=0.03 Score=52.70 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.|.+.|+||||||+..|.++..+. ...|
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G 529 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSG 529 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC-CCCc
Confidence 5789999999999999999999999776 4443
No 249
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.35 E-value=0.032 Score=43.40 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|.+|||||+..+.+...+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988655
No 250
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.35 E-value=0.039 Score=42.64 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-|+|.|..|||||+.++.+.++|.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999985
No 251
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.35 E-value=0.029 Score=46.56 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999888654
No 252
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.33 E-value=0.041 Score=43.46 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988654
No 253
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.33 E-value=0.03 Score=45.63 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778899999999999999999988654
No 254
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.32 E-value=0.033 Score=44.00 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5788999999999999999999988655
No 255
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.032 Score=45.36 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778899999999999999999988655
No 256
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.032 Score=46.34 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999988765
No 257
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.039 Score=45.82 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|.+|||||+..+.|...+
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 577899999999999999999999875
No 258
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.30 E-value=0.032 Score=46.19 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=27.9
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
-.+.+.+.+.|++|||||+..+.+...+. ..+|
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G 55 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG 55 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCc
Confidence 35788999999999999999999999876 4443
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.29 E-value=0.035 Score=44.38 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999999888664
No 260
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.29 E-value=0.075 Score=48.48 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=27.9
Q ss_pred HhhCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
...+-+++++|+|+.|.|||++++.+.+.+-|
T Consensus 38 ~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 38 LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34466799999999999999999999998863
No 261
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.29 E-value=0.051 Score=45.68 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHhHHHHHHHHHhh--------CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 80 IFAIAGSAYRWLRDR--------SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 80 i~~~a~~a~~~~~~~--------~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++....+++..++.. .+...|+|.|.+|+|||+++..+..++.
T Consensus 169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444455555555431 2456899999999999999999999887
No 262
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.28 E-value=0.031 Score=44.26 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 263
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.28 E-value=0.04 Score=45.55 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 478899999999999999999998854
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.27 E-value=0.049 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++.|+.|+|||+.+..+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998887
No 265
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.27 E-value=0.032 Score=45.29 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999998765
No 266
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.27 E-value=0.034 Score=44.97 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.|.|++|||||+..+.|...+. ..+|
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G 58 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD-PTSG 58 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCC
Confidence 4778999999999999999999998765 4444
No 267
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.044 Score=45.06 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
.+.+.+.|.|++|||||+..+.+...+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477899999999999999999998865
No 268
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.26 E-value=0.028 Score=51.60 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.+.|+||||||+..+.+++++.
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~p 401 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999999999874
No 269
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.25 E-value=0.041 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.++|-||||||+.++.+.+.|.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999998876
No 270
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.25 E-value=0.032 Score=43.96 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678899999999999999999888654
No 271
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.037 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 477899999999999999999999865
No 272
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.25 E-value=0.041 Score=50.83 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++...|+++|.+|||||+.++.+.+.|.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~ 417 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLM 417 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence 4555899999999999999999999877
No 273
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.24 E-value=0.032 Score=47.46 Aligned_cols=27 Identities=41% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|.+|||||+..+.++.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 456899999999999999999998765
No 274
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.036 Score=45.65 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998865
No 275
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.028 Score=46.59 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999999888665
No 276
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.24 E-value=0.031 Score=45.76 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3778899999999999999999988665
No 277
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.038 Score=42.58 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4788999999999999999999988765
No 278
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.24 E-value=0.042 Score=47.18 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....|+++|.+|||||+..+.++.++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 456799999999999999999998764
No 279
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.032 Score=45.04 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999888655
No 280
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.22 E-value=0.031 Score=46.02 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988665
No 281
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.21 E-value=0.032 Score=46.23 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999988765
No 282
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.21 E-value=0.042 Score=44.64 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4778999999999999999999988654
No 283
>PRK00625 shikimate kinase; Provisional
Probab=94.20 E-value=0.043 Score=42.91 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-|++.|..|||||+.++.+-+.+-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988654
No 284
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=94.20 E-value=0.033 Score=46.55 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=17.3
Q ss_pred EEEecCCCCCchhHHHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il 118 (186)
-||++|.||||||...+-+-
T Consensus 3 lvIVTGlSGAGKsvAl~~lE 22 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLE 22 (286)
T ss_pred EEEEecCCCCcHHHHHHHHH
Confidence 58999999999999987654
No 285
>PRK08356 hypothetical protein; Provisional
Probab=94.19 E-value=0.036 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.0
Q ss_pred eEEEecCCCCCchhHHHHHHHHH
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
-.|+++|.+|||||+.++.+.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~~ 28 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEEK 28 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999999999653
No 286
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.19 E-value=0.043 Score=44.27 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988654
No 287
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.19 E-value=0.035 Score=44.74 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678899999999999999999998665
No 288
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.18 E-value=0.04 Score=44.40 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4778999999999999999999988654
No 289
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.17 E-value=0.039 Score=44.05 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|.+|||||+..+.+...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4778999999999999999999988765
No 290
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.17 E-value=0.033 Score=45.75 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+++.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678899999999999999999998765
No 291
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.041 Score=45.57 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 578999999999999999999998865
No 292
>PRK14974 cell division protein FtsY; Provisional
Probab=94.16 E-value=0.11 Score=45.00 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++..|++.|..|+|||+++..+..++.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999998877
No 293
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.044 Score=44.78 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999988754
No 294
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.16 E-value=0.04 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.+.|.||||||+.++.+.+.+.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999998764
No 295
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.044 Score=44.76 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.|...+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998753
No 296
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.15 E-value=0.043 Score=43.47 Aligned_cols=31 Identities=32% Similarity=0.579 Sum_probs=25.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
....|.|+|.||+|||+..|.+..... ..+|
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis-p~~G 58 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS-PTSG 58 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC-CCCc
Confidence 566799999999999999999888665 4443
No 297
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.031 Score=46.22 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778999999999999999999988654
No 298
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.044 Score=43.09 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...+.+.|.|++|||||+..+.+...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47789999999999999999988864
No 299
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.044 Score=43.48 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4778999999999999999998888654
No 300
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.13 E-value=0.039 Score=45.18 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4778999999999999999999988765
No 301
>PRK15453 phosphoribulokinase; Provisional
Probab=94.12 E-value=0.055 Score=45.81 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.-.|.++|-||||||+.++.+.+-|.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445789999999999999998887665
No 302
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.12 E-value=0.039 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.6
Q ss_pred CeEEEecCCCCCchhHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVV 118 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il 118 (186)
.+.|+++|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999999874
No 303
>PRK13764 ATPase; Provisional
Probab=94.12 E-value=0.055 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.7
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|+++|.+|||||+.++.+++++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45599999999999999999999987
No 304
>PRK06761 hypothetical protein; Provisional
Probab=94.12 E-value=0.039 Score=46.63 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=23.1
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..|+++|.+|||||+.++.+.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999999886
No 305
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.11 E-value=0.033 Score=47.10 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..|.+...+.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999998765
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.11 E-value=0.037 Score=49.21 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=25.6
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
....+-+.||||||||.++..+++.|.+
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 6678999999999999999999999983
No 307
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.035 Score=44.40 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988655
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.10 E-value=0.097 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=30.4
Q ss_pred HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-|..+..+.-.+|-|+|.+|||||+..+.+++.|.
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566778889999999999999999999999876
No 309
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.10 E-value=0.035 Score=45.59 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999998765
No 310
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.10 E-value=0.048 Score=41.82 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|.+|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988655
No 311
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.09 E-value=0.042 Score=44.07 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5788999999999999999999998765
No 312
>PRK13949 shikimate kinase; Provisional
Probab=94.09 E-value=0.048 Score=42.32 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|++.|..|||||+.++.+-+.+-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999888654
No 313
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.08 E-value=0.062 Score=40.67 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=23.6
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
+....+.-.|++.|.+|+|||+..+.+...
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 333345567999999999999999988774
No 314
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.08 E-value=0.034 Score=50.39 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.+.|+||||||+..+.+..++. ...|
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G 377 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD-PTEG 377 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 5888999999999999999999999776 4433
No 315
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.07 E-value=0.061 Score=46.15 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++.|.+.|.+|+|||+++..+..++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999999999887
No 316
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=94.06 E-value=0.049 Score=42.68 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.9
Q ss_pred CCeEEEecCCCCCchhHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
....|+|.|+||+|||+++-.+++
T Consensus 17 ~G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 17 GGVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999888777
No 317
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.06 E-value=0.076 Score=45.28 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.+=.|+++|.||+|||+.++.+.+.|.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 335667899999999999999999999875
No 318
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.06 E-value=0.034 Score=46.99 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 319
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.04 E-value=0.05 Score=43.62 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999888654
No 320
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.048 Score=44.48 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998753
No 321
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.03 E-value=0.035 Score=52.05 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.|.+.|+||||||+..|.+..++. ...|
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G 520 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEG 520 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 5788999999999999999999999876 4444
No 322
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.03 E-value=0.036 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.|.|++|||||+..+.|...+. ..+|
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G 66 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK-PAQG 66 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 4778899999999999999999988765 4333
No 323
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.03 E-value=0.052 Score=41.65 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.+.|.+|||||+.+..+++.|.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999887
No 324
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.01 E-value=0.038 Score=47.30 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G 81 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYG 81 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence 5889999999999999999999998766 4444
No 325
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.00 E-value=0.037 Score=45.64 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999988765
No 326
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.038 Score=44.81 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999998765
No 327
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.00 E-value=0.098 Score=43.38 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=29.8
Q ss_pred chHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 78 PHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 78 PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
|.+=.+.+++.+.+. .++.|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 444555555554443 35679999999999999999988744
No 328
>PRK08116 hypothetical protein; Validated
Probab=93.99 E-value=0.14 Score=42.78 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+..++|.|.+|+|||+.+..+.+.+.
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999987
No 329
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.98 E-value=0.061 Score=41.53 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.9
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.|.++|.+|||||+.++.+++.|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999887
No 330
>PRK06620 hypothetical protein; Validated
Probab=93.98 E-value=0.11 Score=41.95 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.8
Q ss_pred eEEEecCCCCCchhHHHHHHHHH
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
..++|.|++|+|||+.++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999875553
No 331
>PRK09087 hypothetical protein; Validated
Probab=93.98 E-value=0.098 Score=42.57 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
.+..++|.|++|+|||+.++.+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356699999999999999997764
No 332
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.081 Score=48.05 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 87 AYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 87 a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++++ ..+-+|+++|+|..|.|||++++.+-+.|-
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 344443 346678999999999999999999999775
No 333
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.045 Score=44.08 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|||||+..+.+...+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4788999999999999999999888765
No 334
>PRK10646 ADP-binding protein; Provisional
Probab=93.96 E-value=0.15 Score=39.20 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+..-.|++.|+-|||||+.+|-+++.|.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445789999999999999999999887
No 335
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.96 E-value=0.063 Score=42.10 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.++|.|.+|.|||..+..+.+.++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 3678899999999999999999999887
No 336
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.052 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998865
No 337
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.051 Score=44.74 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4678999999999999999999998654
No 338
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.95 E-value=0.039 Score=45.68 Aligned_cols=28 Identities=39% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 339
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.95 E-value=0.065 Score=47.08 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 82 ~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+..++.-.+.--.+.|.++|.|+.|+|||+.++.+.+.+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56677777777778999999999999999999999999776
No 340
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.94 E-value=0.038 Score=46.05 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|.+|||||+..+.|...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999988765
No 341
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.054 Score=44.86 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4678999999999999999999998653
No 342
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.038 Score=45.93 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678899999999999999999988654
No 343
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.92 E-value=0.04 Score=50.46 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=27.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+-+.|+||||||+..+.+++++- ...|
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G 384 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSG 384 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCC
Confidence 5778899999999999999999999987 4343
No 344
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.052 Score=44.29 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...+.+.|.|++|||||+..+.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999999764
No 345
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.92 E-value=0.045 Score=51.64 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
+..|.+.+.|+||||||+..+.+.+++. ..+|
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G 536 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGG 536 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence 5889999999999999999999999876 4444
No 346
>PRK14532 adenylate kinase; Provisional
Probab=93.92 E-value=0.052 Score=42.29 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.2
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|++.|.+|||||+.++.+.+.+-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999987654
No 347
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.91 E-value=0.12 Score=45.46 Aligned_cols=56 Identities=23% Similarity=0.269 Sum_probs=37.8
Q ss_pred HHHhcCCCCCCCchHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 66 ~~y~~~~~~~~~PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
.+|+.....++--|-.. ...+++++.. +-+++++|+|+.|.|||+.++.+.+.+.|
T Consensus 8 ~k~RP~~~~eiiGq~~~--~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHI--TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHH--HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34554444443323222 2345666655 56678999999999999999999998874
No 348
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.036 Score=46.16 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999988765
No 349
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.91 E-value=0.083 Score=48.37 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.......++.++|.||+|+|||..++.+.++.-
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 334556789999999999999999999987643
No 350
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.91 E-value=0.042 Score=44.58 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|+|||+..+.+...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778899999999999999999998765
No 351
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.90 E-value=0.13 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.7
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++|.|++|+|||+..+.+.+.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999988877
No 352
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.89 E-value=0.1 Score=44.37 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCCchHHHhHHHHHHHHH----hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 75 QLPPHIFAIAGSAYRWLR----DRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 75 ~~~PHi~~~a~~a~~~~~----~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++|.--..+......+. +-.....|+++|.+|||||+.++.+.+.|-
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344433333433333333 335778999999999999999999877543
No 353
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.88 E-value=0.053 Score=44.46 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988654
No 354
>PRK02496 adk adenylate kinase; Provisional
Probab=93.88 E-value=0.055 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l 121 (186)
.|++.|.+|||||+.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998765
No 355
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.86 E-value=0.055 Score=44.23 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.|....
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477899999999999999999998764
No 356
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.86 E-value=0.05 Score=47.09 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....++|.|+||||||+..+.|--...
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446799999999999999988877655
No 357
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.85 E-value=0.04 Score=47.84 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|+||||||+..+.|...+.
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999999998765
No 358
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.85 E-value=0.056 Score=42.63 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999998876
No 359
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.85 E-value=0.061 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
+.+-|.|.|+||||||+..|.+-.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 567799999999999999998888
No 360
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.84 E-value=0.15 Score=42.74 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=29.2
Q ss_pred chHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 78 PHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 78 PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
|-+=++....+-.++.. .++-+++.|++|+|||...+..++-
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhcc
Confidence 44444554444444444 4788999999999999999888764
No 361
>PLN02200 adenylate kinase family protein
Probab=93.84 E-value=0.069 Score=43.74 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+-.|++.|.+|||||+.++.+.+.+-
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999988654
No 362
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.055 Score=44.47 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999998653
No 363
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.83 E-value=0.052 Score=42.14 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|++.|.+|||||+.++.+.+.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999887643
No 364
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.82 E-value=0.055 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=22.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+++.|.||||||+..+.++.++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 589999999999999999999876
No 365
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.82 E-value=0.048 Score=45.08 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+++.+.|++|||||+..+.+...+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 4778999999999999999999987654
No 366
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.82 E-value=0.05 Score=42.53 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.0
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l 121 (186)
-||++|.||+||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998874
No 367
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.82 E-value=0.04 Score=41.45 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|++|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678899999999999999999888654
No 368
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.056 Score=44.09 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4778999999999999999999997653
No 369
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.056 Score=44.42 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988653
No 370
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.80 E-value=0.058 Score=42.68 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999888763
No 371
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.80 E-value=0.046 Score=43.94 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=28.6
Q ss_pred hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.-++.|.+-+.|+.|||||+.+|++...+. ..+|
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG 68 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSG 68 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCc
Confidence 345889999999999999999999988766 5544
No 372
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.79 E-value=0.066 Score=42.72 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-.|.++|..|||||+..+.+++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3588999999999999999999876
No 373
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.79 E-value=0.058 Score=44.57 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.4
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....++|.|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999998775
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.78 E-value=0.056 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
+...|+++.|.||+|||+..|.+--
T Consensus 35 ~aGECvvL~G~SG~GKStllr~LYa 59 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSLYA 59 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHHHh
Confidence 3678999999999999998877643
No 375
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=93.78 E-value=0.042 Score=51.67 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.|.+.|+||||||+..|.++.++. ...|
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G 534 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSG 534 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 5789999999999999999999999876 4444
No 376
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.062 Score=44.43 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 478899999999999999999999754
No 377
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.78 E-value=0.097 Score=41.68 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.....-.|.++|..|||||+..+++++.+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455566777899999999999999999998765
No 378
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.78 E-value=0.042 Score=45.55 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999988654
No 379
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.77 E-value=0.075 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.9
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|+|.|..|||||+.++.+-+.|.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999986
No 380
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.04 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999988665
No 381
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.052 Score=43.80 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=26.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|.+|||||+..+.|...+. ...|
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G 56 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSG 56 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC-CCCC
Confidence 4778999999999999999999998765 4333
No 382
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.75 E-value=0.058 Score=44.43 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999988664
No 383
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.058 Score=44.77 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999998764
No 384
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.06 Score=43.99 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4778999999999999999999998653
No 385
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.059 Score=44.90 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998764
No 386
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.06 Score=44.03 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 478899999999999999999998865
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.72 E-value=0.13 Score=40.12 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 89 RWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 89 ~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.++.. .+-+++++|.|+.|.|||+.++.+.+.+.
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34443 45678999999999999999999999887
No 388
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.72 E-value=0.12 Score=44.86 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 85 GSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 85 ~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
...+..++. .+-+++++|+|+.|.|||+.++.+.+++.|
T Consensus 32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344555544 455889999999999999999999999884
No 389
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.058 Score=46.73 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|+||||||+..+.|...+.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999999988654
No 390
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.70 E-value=0.064 Score=38.08 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l 121 (186)
.|++.|.+|+|||+..+.++.--
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 38899999999999988877643
No 391
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.70 E-value=0.058 Score=46.14 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=24.5
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
..=-|+++|.+|||||++.-.++.|+-.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 4456889999999999999999999873
No 392
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.69 E-value=0.065 Score=42.89 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|++.|.+|||||+.++.+.+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 393
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.68 E-value=0.039 Score=45.77 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|.--.+.|.++|.|++|+|||+.++.+.+.+.
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 44556899999999999999999999998665
No 394
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.064 Score=43.72 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4778999999999999999999988654
No 395
>KOG0056|consensus
Probab=93.67 E-value=0.075 Score=48.46 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...|.|-+.|+||+|||++.+.+++++- ..+|
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffd-v~sG 593 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSG 593 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhh-ccCc
Confidence 3678999999999999999999999988 5554
No 396
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.67 E-value=0.043 Score=47.39 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..|.+...+.
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4678899999999999999999988765
No 397
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.14 Score=46.21 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 86 SAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 86 ~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++.+... +-+++++|+|+.|+|||+.++.+.+.+-
T Consensus 24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555444 4457799999999999999999998775
No 398
>PRK13695 putative NTPase; Provisional
Probab=93.65 E-value=0.066 Score=41.32 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+|+|++|+|||+.++.+.+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999888765
No 399
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.64 E-value=0.06 Score=43.92 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...+.+.|.|++|||||+..+.|...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 47789999999999999999998875
No 400
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.62 E-value=0.058 Score=44.57 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778999999999999999998887654
No 401
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.052 Score=45.41 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.|...+.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 4778999999999999999999998875
No 402
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.052 Score=45.22 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=27.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G 62 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEG 62 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCC
Confidence 4788999999999999999999998776 4444
No 403
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.048 Score=45.42 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 404
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.60 E-value=0.045 Score=48.15 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|+||||||+..+.+...+. ..+|
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-p~~G 79 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNP-VSRG 79 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCc
Confidence 3778899999999999999999998766 4444
No 405
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.60 E-value=0.046 Score=47.45 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|+||||||+..+.|.....
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4678999999999999999999988765
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.60 E-value=0.09 Score=44.10 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 82 ~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++.....+++.+.-+.+++.|.+|+|||+..+.+...+.
T Consensus 96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34566666666666568999999999999999999999877
No 407
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.59 E-value=0.048 Score=43.69 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778999999999999999999988765
No 408
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.15 Score=46.99 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=37.0
Q ss_pred HHHHhcCCCCCCC--chHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 65 ARAYRTRGPFQLP--PHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 65 ~~~y~~~~~~~~~--PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
..+|+-....+.- +|+.. .+.+++.. +-+.+++|+|+.|+|||+.++.+.+.|.|
T Consensus 7 a~KyRP~~f~diiGq~~~v~----~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALN----SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455554444433 44442 24444444 55677999999999999999999998873
No 409
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.58 E-value=0.044 Score=44.36 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778899999999999999998887654
No 410
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.57 E-value=0.063 Score=43.96 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4778999999999999999999887653
No 411
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.57 E-value=0.12 Score=43.33 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+++.|++|+|||+.++.+.+.+.
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999988764
No 412
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.57 E-value=0.06 Score=44.28 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G 76 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDG 76 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccC-CCCC
Confidence 4778999999999999999999998765 4444
No 413
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.56 E-value=0.05 Score=44.63 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4678899999999999999999988654
No 414
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.56 E-value=0.14 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHH
Q psy18111 86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119 (186)
Q Consensus 86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~ 119 (186)
.++..|-...+.-.|++.|.+|+|||+..+.+..
T Consensus 8 ~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 8 NVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455554455566799999999999999887764
No 415
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.56 E-value=0.065 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=22.2
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-++|.|++|+|||+.++.+.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999998887
No 416
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.067 Score=43.61 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4788999999999999999999988653
No 417
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.05 Score=45.33 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G 59 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSG 59 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCce
Confidence 4788999999999999999999998665 4444
No 418
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.53 E-value=0.073 Score=43.61 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+...+|.|++|||||+..+.|.-.|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 56688999999999999988887765
No 419
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.53 E-value=0.12 Score=45.03 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..-..|+|.|++|+|||+.++.+.+++.
T Consensus 36 p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 36 PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3446799999999999999999999987
No 420
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.048 Score=50.74 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|+||||||+..+.|...+.
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3678999999999999999999999875
No 421
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.053 Score=45.31 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|++|+|||+..+.|...+. ..+|
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G 62 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAG 62 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCc
Confidence 4778899999999999999999988765 4433
No 422
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.51 E-value=0.09 Score=44.06 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++.+.|++.|.+|+|||+++..+..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3567899999999999999999988877
No 423
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.50 E-value=0.052 Score=45.92 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=27.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.+.|++|||||+..|.+...+. ..+|
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G 60 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSG 60 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC-CCce
Confidence 3677899999999999999999999877 4443
No 424
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=93.50 E-value=0.047 Score=49.85 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...|.+.+.|+||||||+..+.+...+.
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5778999999999999999999999765
No 425
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.50 E-value=0.08 Score=41.40 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=23.2
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-.|.++|..|+|||+.++++...|.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999888
No 426
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.49 E-value=0.045 Score=47.79 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.++|.|.||||||+..+.|...+. ..+|
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G 48 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAG 48 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC-CCce
Confidence 4678999999999999999999998776 4443
No 427
>KOG3354|consensus
Probab=93.49 E-value=0.07 Score=41.55 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.2
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|+++|-||+|||+..+.+.+-|.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC
Confidence 699999999999999999998776
No 428
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.49 E-value=0.067 Score=44.65 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999988664
No 429
>PRK06921 hypothetical protein; Provisional
Probab=93.48 E-value=0.19 Score=42.01 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.6
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....++|.|++|+|||+.+..|.+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 467899999999999999999999877
No 430
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.47 E-value=0.054 Score=45.23 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.|.|.+|||||+..+.+...+. ..+|
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G 62 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESG 62 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 4778899999999999999999998765 4443
No 431
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.47 E-value=0.068 Score=41.56 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
..+..|+|.||+|+||+..++.|-+.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 45578999999999999999998774
No 432
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.46 E-value=0.063 Score=43.64 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|.+|||||+..+.+...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 467899999999999999999988863
No 433
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.075 Score=40.18 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3668999999999999999888877544
No 434
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.44 E-value=0.075 Score=43.03 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.|.|.|.+|||||+.++.+.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987655
No 435
>PLN02796 D-glycerate 3-kinase
Probab=93.43 E-value=0.15 Score=44.28 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
=.|.|+|.+|||||+.++.+...+.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3488999999999999999998876
No 436
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.43 E-value=0.067 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-|+++|-.|||||+.++.+.++|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999999988
No 437
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.43 E-value=0.065 Score=46.64 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+...+.+.|.|||||||+.|.|--+-.
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 556788999999999999999888755
No 438
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.43 E-value=0.054 Score=49.82 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=27.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|+||||||+..+.+.+++. ..+|
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G 395 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQG 395 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence 6888999999999999999999999876 4444
No 439
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.43 E-value=0.055 Score=45.30 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|++|||||+..+.|...+. ..+|
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G 61 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILK-PSSG 61 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCcc
Confidence 4788999999999999999999998765 4433
No 440
>PRK05439 pantothenate kinase; Provisional
Probab=93.42 E-value=0.14 Score=43.78 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.+-.|.|+|.+|||||+.++.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555788999999999999999988765
No 441
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.41 E-value=0.072 Score=44.43 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778899999999999999999988654
No 442
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.41 E-value=0.063 Score=42.80 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...++++|++|+|||+..|.+....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3789999999999999999887533
No 443
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.39 E-value=0.093 Score=35.21 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.5
Q ss_pred EEecCCCCCchhHHHHHHHHHHh
Q psy18111 100 IIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l~ 122 (186)
|+++|..|+|||+.+..+.+.|.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA 24 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998
No 444
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.39 E-value=0.12 Score=48.06 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 82 AIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 82 ~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
-++-+|-+-+... ...-.|.|.|.||||||+.++.|...+.
T Consensus 49 ~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 49 FVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred hhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 3444554444432 2334678899999999999999998764
No 445
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.052 Score=48.00 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG 83 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRG 83 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC-CCCC
Confidence 4778999999999999999999998765 4333
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.073 Score=44.08 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.+.|.||+||||..+.|--+.. ..+|
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G 58 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSG 58 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 4788999999999999999999888766 4433
No 447
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.37 E-value=0.056 Score=45.41 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|.+|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 448
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.36 E-value=0.16 Score=40.27 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+|.+.++ ...++.+++.|..|+|||+..+.+.+.+.
T Consensus 8 ~a~~~~l-~~~~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 8 EAVRAIL-TSGDRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HHHHHHH-HCTCSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3444444 34668899999999999999999999887
No 449
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.36 E-value=0.054 Score=46.00 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.|.|.+|||||+..+.+...+. ..+|
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G 62 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTG 62 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCc
Confidence 4778999999999999999999998765 4333
No 450
>PRK13975 thymidylate kinase; Provisional
Probab=93.36 E-value=0.075 Score=41.47 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=23.0
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.-|++.|..|||||+.++.+-+.|-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999876
No 451
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.36 E-value=0.074 Score=44.62 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999999998765
No 452
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.36 E-value=0.068 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEecCCCCCchhHHHHHHHHHH
Q psy18111 100 IIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il~~l 121 (186)
|++.|.+|||||+.++.+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8899999999999999988754
No 453
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.35 E-value=0.13 Score=47.95 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
......++.++|.|++|+|||+.++.+.+...
T Consensus 169 ~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 169 KVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 34456678899999999999999999988764
No 454
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.066 Score=43.06 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+..-+.+.|.||||||+..|+|+.-.-
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3556688999999999999999988655
No 455
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.057 Score=45.33 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|.+|||||+..+.+...+.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4778999999999999999999998765
No 456
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.33 E-value=0.13 Score=48.88 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..++.+....+...++|.|++|+|||+.++.+.+.+.
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566677777778999999999999999999987653
No 457
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.31 E-value=0.097 Score=45.17 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=26.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+....||+|-||||||+..+.+=+..- ..+|
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrLie-pt~G 83 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRG 83 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhccCC-CCCc
Confidence 3677889999999999999988877655 5554
No 458
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.077 Score=43.78 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.+...+
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999998754
No 459
>PRK10436 hypothetical protein; Provisional
Probab=93.30 E-value=0.066 Score=48.26 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.=.|+++|.+|||||++...+++++.
T Consensus 218 ~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCeEEEECCCCCChHHHHHHHHHhhC
Confidence 33688999999999999999999875
No 460
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.29 E-value=0.078 Score=38.97 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.5
Q ss_pred CeEEEecCCCCCchhHHHHHHHHH
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...|++.|.+|+|||+....++..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999998887654
No 461
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.079 Score=43.34 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|.+|||||+..+.+...+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 477889999999999999999998754
No 462
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=93.26 E-value=0.058 Score=49.17 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|+||||||+..+.+..++. ...|
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G 373 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP-PTSG 373 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 5788999999999999999999999876 4443
No 463
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.26 E-value=0.063 Score=49.29 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|+||||||+..+.+..++. ..+|
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G 370 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEG 370 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC-CCCC
Confidence 5788999999999999999999999876 4444
No 464
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.25 E-value=0.23 Score=42.95 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=26.6
Q ss_pred hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 94 RSEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+..-.|.++|.+|||||+.+..+..++.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999887
No 465
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.25 E-value=0.057 Score=44.30 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4678999999999999999999988655
No 466
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=93.23 E-value=0.058 Score=50.18 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..|.|...+.
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~ 375 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVE 375 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4677899999999999999999998765
No 467
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.23 E-value=0.087 Score=42.81 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.0
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.-.|.+.|.+|||||+.++.+.+.+-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998774
No 468
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.21 E-value=0.053 Score=47.12 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|+||||||+..+.|...+.
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 3678899999999999999999988765
No 469
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.089 Score=42.90 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|.+|||||+..+.+...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 477899999999999999999998754
No 470
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.21 E-value=0.14 Score=48.94 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=29.7
Q ss_pred HHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 87 AYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 87 a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
.+++.+.. +-.+.++|+|..|.|||++++.+.+.|.|
T Consensus 27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44454554 44788999999999999999999998863
No 471
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.21 E-value=0.063 Score=43.51 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|+|||+..+.+...+.
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4788999999999999999998877654
No 472
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.083 Score=41.46 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.4
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.|++.|.-|||||+..|.+-+.|-
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 46799999999999999999988776
No 473
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.19 E-value=0.18 Score=46.87 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=37.2
Q ss_pred HHHhcCCCCCCC--chHHHhHHHHHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111 66 RAYRTRGPFQLP--PHIFAIAGSAYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIAC 123 (186)
Q Consensus 66 ~~y~~~~~~~~~--PHi~~~a~~a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~ 123 (186)
.+|+.....++- +|+- ..+.+.+ ..+-+++++|+|+.|.|||+.++.+.+.|.|
T Consensus 8 ~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455544443333 3333 3444444 3466889999999999999999999999863
No 474
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.057 Score=47.11 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+.+.|.|+||||||+..+.|...+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 668899999999999999999988665
No 475
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.17 E-value=0.085 Score=43.10 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4778999999999999999999988654
No 476
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.17 E-value=0.24 Score=42.81 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHhcCCCCCCCchHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 65 ARAYRTRGPFQLPPHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 65 ~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+|+.....++--|-. +.+.+.+.... +-++.++|.|+.|.|||+.++.+.+.+.
T Consensus 8 ~~k~rP~~~~~iig~~~--~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSH--ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred HHHHCCCcHHhcCCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45666655555543433 23445555444 4567999999999999999999999886
No 477
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=0.067 Score=43.21 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|+|||+..+.+...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988765
No 478
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=93.14 E-value=0.16 Score=41.63 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 83 IAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 83 ~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
..+++|..|... ....+-.+.|+.|+||||+.|.+-+.|.
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG 57 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG 57 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence 456777766443 6778899999999999999999988665
No 479
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.076 Score=44.10 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.+.|.+|||||+..+.+...+.
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4788999999999999999999988653
No 480
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.13 E-value=0.083 Score=43.92 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4788999999999999999999988654
No 481
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.11 E-value=0.064 Score=44.77 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=24.8
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.+...+.
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4778899999999999999999988765
No 482
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=93.10 E-value=0.071 Score=39.37 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEecCCCCCchhHHHHHHH--HHHh
Q psy18111 100 IIVSGESGSGKTQAASMVV--YFIA 122 (186)
Q Consensus 100 IilsGeSGsGKt~~~k~il--~~l~ 122 (186)
|++.|.+|+|||+..+.+. .+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~ 26 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA 26 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee
Confidence 7899999999999999999 4444
No 483
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.07 E-value=0.063 Score=45.58 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G 62 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAG 62 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC-CCce
Confidence 4778999999999999999999998765 4333
No 484
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.05 E-value=0.067 Score=48.11 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|++|||||+..|.+...+.
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778999999999999999999998765
No 485
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.05 E-value=0.086 Score=43.02 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...+.+.|.|.+|||||+..+.+...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 36788999999999999999999865
No 486
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.05 E-value=0.065 Score=49.44 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
...+.+.+.|+||||||+..+.++.++. ..+|
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G 390 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVG 390 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCC-CCCC
Confidence 5789999999999999999999999876 4444
No 487
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.05 E-value=0.064 Score=46.47 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|++|||||+..+.|...+.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3668899999999999999999988765
No 488
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.04 E-value=0.11 Score=42.55 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.6
Q ss_pred CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 97 DQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 97 ~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+..|++.|.+|||||+.++.+.+.+.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999988654
No 489
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.04 E-value=0.088 Score=40.54 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEecCCCCCchhHHHHHHHHHHh
Q psy18111 99 CIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
++++.|++|+|||..+..++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999888877665
No 490
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.04 E-value=0.087 Score=44.14 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
...+.+.|.|.+|||||+..+.+...+.
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 5778999999999999999999998864
No 491
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=93.03 E-value=0.061 Score=49.24 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~ 127 (186)
.+.|.+.+.|+||||||+..+.+.+++. ..+|
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G 397 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEG 397 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence 5788999999999999999999999776 4444
No 492
>PRK04195 replication factor C large subunit; Provisional
Probab=93.02 E-value=0.12 Score=46.70 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.8
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
....++|+|++|+|||+.++.+.+.+-
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999988664
No 493
>PRK07429 phosphoribulokinase; Provisional
Probab=93.00 E-value=0.1 Score=45.01 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.-.|.|.|.||||||+.++.+.+.|-
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 344688899999999999999998764
No 494
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.99 E-value=0.089 Score=44.12 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFI 121 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l 121 (186)
...+.+.|.|++|||||+..+.|...+
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477899999999999999999998753
No 495
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.97 E-value=0.078 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 98 QCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 98 Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
=-|+++|.+|||||++...+++++.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 3578999999999999999999875
No 496
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.085 Score=45.20 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+..+-+.+.|+||||||+..+.|--...
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence 3677899999999999999988877665
No 497
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=92.97 E-value=0.079 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.7
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYF 120 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~ 120 (186)
...-|+|+|+||+||||++-.+++-
T Consensus 144 ~GvGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 144 FGVGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eeeEEEEECCCCCCHhHHHHHHHHh
Confidence 3456999999999999998777774
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=92.96 E-value=0.1 Score=43.30 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 96 EDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 96 ~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
+.+.++|.|++|+|||+.+..+...++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999876655
No 499
>PRK01184 hypothetical protein; Provisional
Probab=92.95 E-value=0.083 Score=40.98 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.9
Q ss_pred EEEecCCCCCchhHHHHH
Q psy18111 99 CIIVSGESGSGKTQAASM 116 (186)
Q Consensus 99 ~IilsGeSGsGKt~~~k~ 116 (186)
.|+++|.+|||||+.++.
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999998873
No 500
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.94 E-value=0.07 Score=44.78 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111 95 SEDQCIIVSGESGSGKTQAASMVVYFIA 122 (186)
Q Consensus 95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~ 122 (186)
.+.+.+.|.|.+|||||+..+.+...+.
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4788999999999999999999988655
Done!