RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18111
(186 letters)
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 261 bits (669), Expect = 3e-84
Identities = 87/170 (51%), Positives = 126/170 (74%), Gaps = 1/170 (0%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D VLL +SE+ + NL R++ D IYTYIG VL++VNP+K L IY+ E Y+ + +
Sbjct: 4 DLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRY 63
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA 134
+LPPHI+A+A +AYR ++ +E+QC+I+SGESG+GKT+AA ++ +IA + G V
Sbjct: 64 ELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKV-ER 122
Query: 135 VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
V++ + PLLEAFGNA+TL+N+NSSRFGKY++I+FD+KGDP+G ITN
Sbjct: 123 VKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITN 172
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 250 bits (642), Expect = 3e-80
Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 5/182 (2%)
Query: 3 PPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSA 62
PP E D VLL L+E + NL RY +D IYTYIG VLV VNPYK L IY+
Sbjct: 2 PPKFEGVE----DLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTD 57
Query: 63 ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
E+ + YR + +LPPH+FAIA +AYR + + E+Q II+SGESG+GKT+ ++ ++A
Sbjct: 58 EVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLA 117
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
+ G+ + +V +++ P+LEAFGNA+TL+N+NSSRFGK+++I FD KG +GA I
Sbjct: 118 -SVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKI 176
Query: 183 TN 184
Sbjct: 177 ET 178
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 218 bits (558), Expect = 5e-68
Identities = 78/172 (45%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 14 WDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGP 73
D L L+E T ++NL RYK+D IYTY G +L+ VNPYK L Y E R YR +
Sbjct: 3 DDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSR 62
Query: 74 FQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPGTGPVL 132
+LPPH+FAIA AYR + +Q II+SGESG+GKT+ +++ Y G
Sbjct: 63 SELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYL----ASLAGSND 118
Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
+ EK+ P+LEAFGNA+T++N+NSSRFGK+++++FD G GA IT
Sbjct: 119 TGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITT 170
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 217 bits (555), Expect = 2e-67
Identities = 76/170 (44%), Positives = 111/170 (65%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L L+E + + NL RY D IYTY G VL++VNPYK L IY+ E YR +
Sbjct: 3 DLAALTQLNETSVLHNLKKRYTGDLIYTYSGLVLISVNPYKRLPIYTEEPIGEYRGKRRG 62
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA 134
+LPPHIFA+A AYR + E+QCI++SGESG+GKT+ ++ ++A + T +
Sbjct: 63 ELPPHIFALADRAYRHMLRDKENQCIVISGESGAGKTENTKKLMQYLASVSGSTPSAVGP 122
Query: 135 VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
+ +++ P+LEAFGNA+TL+N+NSSRFGK+++I+FD G +G +I
Sbjct: 123 LEDQILQSNPILEAFGNAKTLRNNNSSRFGKFIEIQFDATGSIVGGNIET 172
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 214 bits (548), Expect = 8e-65
Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 4/184 (2%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
+ P + D L L+E + NL RY IYTY G VL+ VNPY+ L IY
Sbjct: 60 IKLPKFDGVD----DLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIY 115
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
+ ++ ++Y + +L PH+FAIA AYR L E+Q II+SGESG+GKT+ A ++ +
Sbjct: 116 TDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQY 175
Query: 121 IACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
+A T + ++++ +++ P+LEAFGNA+T++NDNSSRFGKY+ IEFD G+ GA
Sbjct: 176 LASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGA 235
Query: 181 HITN 184
I
Sbjct: 236 KIET 239
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 181 bits (461), Expect = 7e-54
Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L L+E + + NL RY D IYTY G V VNPYK L IY+ E+ YR +
Sbjct: 9 DMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKRE 68
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YF--IACATPGTGPV 131
++PPHIFAIA +AYR + E+Q I+++GESG+GKT+ V+ Y +A ++
Sbjct: 69 EMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQS 128
Query: 132 ---LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
+ +++ P+LEAFGNA+T++NDNSSRFGK++ I F G GA I
Sbjct: 129 GKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADI 182
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 175 bits (446), Expect = 6e-52
Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 4/173 (2%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
G D + L L E + NL +RYK+ IYTY G++LV VNPY+ L IY+A+ + Y+ +
Sbjct: 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNK 60
Query: 72 GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
+LPPHIFAI+ +AY ++ ++QCII+SGESG+GKT++ +++ ++A + +
Sbjct: 61 SIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWI 120
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
+ E P+LEAFGNA+T++NDNSSRFGKY+DI F+ +G GA I
Sbjct: 121 EQQILEA----NPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQ 169
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 174 bits (444), Expect = 1e-51
Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 1/172 (0%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSAELARAYRT 70
G D L L E + NL RY+ + IYTY GN+L+ VNP++ L ++Y + Y+
Sbjct: 2 GVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKG 61
Query: 71 RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP 130
+L PH+FAIA +AYR + + + Q I+VSGESG+GKT+ M++ ++A G
Sbjct: 62 AALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGV 121
Query: 131 VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
V +++ P+LEAFGNA+T++N+NSSRFGK+++I+FD G GA I
Sbjct: 122 EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAI 173
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 172 bits (437), Expect = 1e-50
Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 4/172 (2%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
G D L+ L E T + NL LR++R+ IYTYIG++LV+VNPYK IY E + Y R
Sbjct: 2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGR 61
Query: 72 GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
+ PPH+FAIA A+ + D ++QC+I+SGESGSGKT+A +++ ++A G V
Sbjct: 62 ALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAV 121
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
+ E++ PLLEAFGNA+T++NDNSSRFGK+++I + G +GA +
Sbjct: 122 ---ITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITS 169
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 169 bits (430), Expect = 2e-49
Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L L E + NL +R+ + IYTY G VLV +NPY L IY E+ +AY +
Sbjct: 4 DLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKG 63
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIAC-ATPGTGPVL 132
+L PHIFAIA AY+ + ++Q IIVSGESG+GKT +A ++ YF + +
Sbjct: 64 ELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSE 123
Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
V EK+ P++EAFGNA+T +NDNSSRFGKY+ I FD +G +GA++
Sbjct: 124 TQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANM 173
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 168 bits (426), Expect = 6e-49
Identities = 68/163 (41%), Positives = 109/163 (66%), Gaps = 5/163 (3%)
Query: 22 LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSAELARAYRTRGPFQLPPHI 80
L+E T ++N+ +RY +D IYTY+ N+L+ VNPY + +YS++ + Y+ + LPPH+
Sbjct: 15 LNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHV 74
Query: 81 FAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLK 140
FAIA AYR ++ Q IIVSGESG+GKT+ V+ ++ + G+G + +++
Sbjct: 75 FAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYL-TESYGSG---QDIDDRIV 130
Query: 141 HIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
PLLEAFGNA+T++N+NSSRFGK+++I F+ K +G ++
Sbjct: 131 EANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVS 173
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 163 bits (414), Expect = 2e-47
Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 9/172 (5%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L+ L EDT + L RY+ + IYTY+G++L+ VNP++ L +Y+ + +R Y +
Sbjct: 4 DLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRS 63
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV---YFIACATPGTGPV 131
PPHIFAIA +AY+ L ++DQCI++SGESGSGKT++A ++V + A T
Sbjct: 64 SNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRT--- 120
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
++EK+ + L+EAFGNA+T NDNSSRFGKYL+++F G +GA I+
Sbjct: 121 ---LQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARIS 169
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 147 bits (373), Expect = 1e-41
Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 4/170 (2%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAY--RTRG 72
D L L+E T + NL R+ + HIYTY G++LV VNP+K L IY+ + R Y + R
Sbjct: 11 DLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRL 70
Query: 73 PFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL 132
+LPPHIFAIA AY + + +QCI++SGESGSGKT++ + +++ + A G
Sbjct: 71 G-KLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLT-ALSQKGYAG 128
Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
+ V + + GP+LEAFGNA+T N+NSSRFGK++ + + G GA +
Sbjct: 129 SGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVV 178
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 147 bits (372), Expect = 2e-41
Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
G D + L L+E + + NL RY +D IYT G VLV VNP+K + +Y + AYR +
Sbjct: 9 GVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKK 68
Query: 72 GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
PH++AIA +AY + +Q II+SGESG+GKT+ A + + ++A G+G
Sbjct: 69 --SNDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSG-- 124
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
+ ++ P+LEAFGNA+T +NDNSSRFGK ++I F G GA I
Sbjct: 125 ---IEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKI 172
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 128 bits (324), Expect = 9e-35
Identities = 57/148 (38%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 31 LHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYR-TRGPFQLPPHIFAIAGSAYR 89
L RY ++ IYT +LV +NP+K L + + R YR + +LPPH+F A A
Sbjct: 116 LKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALE 175
Query: 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGT--GPVLNAVREKLKHIGPLLE 147
L + Q IIVSGESG+GKT+A ++ + A + G + NA+ P+LE
Sbjct: 176 NLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAA----NPVLE 231
Query: 148 AFGNAQTLKNDNSSRFGKYLDIEFDYKG 175
AFGNA+T++N+NSSRFG+++ ++ +G
Sbjct: 232 AFGNAKTIRNNNSSRFGRFMQLQLGEEG 259
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 118 bits (296), Expect = 5e-31
Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 4/162 (2%)
Query: 22 LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIF 81
L+E + + L RY + I+T G L+ +NP PL +YS ++ +R +PPHI+
Sbjct: 11 LNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIY 70
Query: 82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVR-EKLK 140
++A +AYR L + DQ II G SG+GKT + + ++A A G V V EK++
Sbjct: 71 SLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALA---AGSVDGRVSVEKVR 127
Query: 141 HIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
+ +LEAFGN T N N++RF + L ++FD G A +
Sbjct: 128 ALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASL 169
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 51.4 bits (123), Expect = 2e-08
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKL 139
+F G + D + CI G++GSGKT Y + G G ++ +
Sbjct: 8 VFRDVGPLLQSALD-GYNVCIFAYGQTGSGKT-------YTMEGKREGAG-IIPRTVTDV 58
Query: 140 KHIGPLLEAFG-NAQTLKNDNSSRFGKYLDIEFDYKG 175
+ A A T N++SSR I F K
Sbjct: 59 IDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKN 95
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 34.6 bits (80), Expect = 0.007
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 94 RSEDQCIIVSGESGSGKTQAASMV--------VYFIACATPGT 128
R +++GESGSGKT + V ++ + GT
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGT 43
>gnl|CDD|240960 cd12516, RRM1_RBM26, RNA recognition motif 1 of vertebrate
RNA-binding protein 26 (RBM26). This subgroup
corresponds to the RRM1 of RBM26, also known as
cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2,
which represents a cutaneous lymphoma (CL)-associated
antigen. It contains two RNA recognition motifs (RRMs),
also known as RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains). The RRMs may play some
functional roles in RNA-binding or protein-protein
interactions. .
Length = 76
Score = 31.2 bits (70), Expect = 0.056
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 157 NDNSSRFGKYLDIEFDYKGDPLGAHI 182
N++ S+FG ++++ YKGDP GA I
Sbjct: 20 NEHFSKFGTLVNLQVAYKGDPEGALI 45
>gnl|CDD|227658 COG5360, COG5360, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 566
Score = 32.9 bits (75), Expect = 0.087
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 51 VNPYKPLNIYSAELA---RAYRTRG--PFQ--LPPHIFAIAGSAYRWLRD----RSEDQC 99
++P I S A R T G PFQ P H FA + WLR SE
Sbjct: 55 IDPQHAQEILSGRFALAGRVVETGGDSPFQVDSPSHEFAARLHGFGWLRHLRAAGSELAA 114
Query: 100 I 100
Sbjct: 115 A 115
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 32.0 bits (73), Expect = 0.18
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 95 SEDQCIIVSGESGSGKT 111
+E+Q +I++GE+GSGKT
Sbjct: 80 AENQVVIIAGETGSGKT 96
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 31.6 bits (72), Expect = 0.22
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 95 SEDQCIIVSGESGSGKT 111
+ Q +IV+GE+GSGKT
Sbjct: 87 RDHQVVIVAGETGSGKT 103
>gnl|CDD|235450 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 31.2 bits (72), Expect = 0.22
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 100 IIVSGESGSGKTQAA 114
+IV+G SG+GK+ A
Sbjct: 9 VIVTGLSGAGKSVAL 23
>gnl|CDD|236461 PRK09302, PRK09302, circadian clock protein KaiC; Reviewed.
Length = 509
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 100 IIVSGESGSGKTQAASMVVYFI--ACA 124
I+VSG +G+GKT + F AC
Sbjct: 276 ILVSGATGTGKT---LLASKFAEAACR 299
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 30.7 bits (70), Expect = 0.29
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 91 LRDRSEDQC-IIVSGESGSGKTQAASMVVYFIAC 123
L E + I++SG +GSGKT + ++ FI
Sbjct: 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 30.4 bits (68), Expect = 0.31
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 98 QCIIVSGESGSGKTQAASMVVYFIACATPG 127
+ I++ G GSGKT A + + G
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGG 32
>gnl|CDD|165235 PHA02923, PHA02923, hypothetical protein; Provisional.
Length = 315
Score = 30.6 bits (69), Expect = 0.35
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNV 47
+DP ++D ET CVL++ + ++ R+++ HIY G+V
Sbjct: 180 IDPHHLIDLET---ICVLVNRSGKCLLVNEHLGRFRKKHIYDSFGDV 223
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 30.9 bits (70), Expect = 0.36
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATP 126
I++SG +GSGKT A+ V+ I + P
Sbjct: 147 IVISGGTGSGKTTLANAVIAEIVASAP 173
>gnl|CDD|224574 COG1660, COG1660, Predicted P-loop-containing kinase [General
function prediction only].
Length = 286
Score = 30.3 bits (69), Expect = 0.48
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 100 IIVSGESGSGKTQAA 114
+IV+G SG+GK+ A
Sbjct: 4 VIVTGLSGAGKSVAL 18
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 30.2 bits (69), Expect = 0.61
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 81 FAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQA 113
IAG RSE Q I++ G +G+GKTQA
Sbjct: 2 LTIAGVPLPR---RSETQHILIVGTTGTGKTQA 31
>gnl|CDD|240961 cd12517, RRM_RBM27, RNA recognition motif of vertebrate RNA-binding
protein 27 (RBM27). This subgroup corresponds to the
RRM of RBM27 which contains a single RNA recognition
motif (RRM), also known as RBD (RNA binding domain) or
RNP (ribonucleoprotein domain). Although the specific
function of the RRM in RBM27 remains unclear, it shows
high sequence similarity with RRM1of RBM26, which
functions as a cutaneous lymphoma (CL)-associated
antigen. .
Length = 76
Score = 28.1 bits (62), Expect = 0.85
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 151 NAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
N T N++ S+FG ++I+ ++GDP A I
Sbjct: 14 NNITQLNEHFSKFGTIVNIQVAFQGDPEAALI 45
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 45 GNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRD 93
GNV V P + + + + Y + LPP +A Y WLR
Sbjct: 512 GNVFVGPQPPRG---WLGDESALYHSP---DLPPTHQYLA--FYYWLRR 552
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 28.4 bits (64), Expect = 1.8
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 100 IIVSGESGSGK-TQAASMVVYF-------IACATPGTGPVLNAVREKLKH-----IGPLL 146
I+ G G+GK T + + PG P+ A+RE L + P
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRA 62
Query: 147 EAF 149
E
Sbjct: 63 ELL 65
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 28.1 bits (63), Expect = 1.9
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 99 CIIV--SGESGSGKTQAASMVVYFIAC 123
II+ G SGSGKT A + +
Sbjct: 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 2.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 87 AYRWLRDRSEDQ---CIIVSGESGSGKT 111
A LR+ E +++ G G+GKT
Sbjct: 6 AIEALREALELPPPKNLLLYGPPGTGKT 33
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as twitching
motility.
Length = 198
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 100 IIVSGESGSGK-TQAASMVVYF 120
++V+G +GSGK T A+M+ Y
Sbjct: 4 VLVTGPTGSGKSTTLAAMIDYI 25
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 27.9 bits (62), Expect = 2.0
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 94 RSEDQCIIVSGESGSGKT 111
++++G SG+GKT
Sbjct: 21 SGGPPSVLLTGPSGTGKT 38
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 28.4 bits (64), Expect = 2.0
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 38 DHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGP----FQLPPHIFAIAGSAYRWLRD 93
D YT G VN +K Y+ L R ++ P LPP + +A
Sbjct: 72 DFSYTLPGVARFRVNAFKQRGGYALVL-RLIPSKIPTLEELGLPPIVRELA--------- 121
Query: 94 RSEDQCIIVSGESGSGK-TQAASMVVYF 120
S I+V+G +GSGK T A+M+ Y
Sbjct: 122 ESPRGLILVTGPTGSGKSTTLAAMIDYI 149
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal
domain including a metal-binding cysteine cluster
[General function prediction only].
Length = 851
Score = 28.5 bits (64), Expect = 2.3
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 62 AELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQA 113
L A G +L H A R +R E + ++V+ +GSGKT++
Sbjct: 57 ESLKSALVKAGIERLYSH----QVDALRLIR---EGRNVVVTTGTGSGKTES 101
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in
this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 27.8 bits (62), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 100 IIVSGESGSGKTQAASMV 117
I +SG GSGKT A ++
Sbjct: 3 ITISGPPGSGKTTVAKIL 20
>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan glycerol kinases (GKs), coded by X
chromosome-linked GK genes, and glycerol kinase
(GK)-like proteins, coded by autosomal testis-specific
GK-like genes (GK-like genes, GK1 and GK3). Sequence
comparison shows that metazoan GKs and GK-like proteins
in this family are closely related to the bacterial GKs,
which catalyze the Mg-ATP dependent phosphorylation of
glycerol to yield glycerol 3-phosphate (G3P). The
metazoan GKs do have GK enzymatic activity. However, the
GK-like metazoan proteins do not exhibit GK activity and
their biological functions are not yet clear. Some of
them lack important functional residues involved in the
binding of ADP and Mg2+, which may result in the loss of
GK catalytic function. Others that have conserved
catalytic residues have lost their GK activity as well;
the reason remains unclear. It has been suggested the
conserved catalytic residues might facilitate them
performing a distinct function. GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 504
Score = 28.5 bits (64), Expect = 2.6
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMV-----VYFI 121
AIAG+A RWLRD I S + + AS V VYF+
Sbjct: 314 AIAGAAIRWLRDNL--GIIKTSSDI----EKLASEVGTSGDVYFV 352
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 27.8 bits (62), Expect = 3.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 64 LARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC 123
L++ +R R + + A+ ++ LR+ Q + + GE+GSGK+ A M+ I
Sbjct: 10 LSKTFRYRTGWFRRQTVEAVKPLSFT-LREG---QTLAIIGENGSGKSTLAKMLAGMIE- 64
Query: 124 ATPGTGPVL 132
P +G +L
Sbjct: 65 --PTSGELL 71
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 27.5 bits (61), Expect = 3.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATP 126
I+V G +GSGKT A + IA
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATKGG 28
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 27.5 bits (62), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 100 IIVSGESGSGKTQAASMV 117
I +SG GSGKT A ++
Sbjct: 3 ITISGPPGSGKTTVARLL 20
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 27.2 bits (61), Expect = 3.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 99 CIIVSGESGSGKTQAASMV 117
I+V G SGSGK+ +
Sbjct: 1 IIVVMGVSGSGKSTVGKAL 19
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 27.3 bits (61), Expect = 3.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 100 IIVSGESGSGKTQAASMV 117
I +SG GSGKT A +
Sbjct: 3 ITISGLPGSGKTTVAREL 20
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 27.8 bits (62), Expect = 4.0
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDN 159
+++ G GSGKT T + I LL AF A+ K +
Sbjct: 225 LLILGAPGSGKTTFLQ---RLALWLAQRTLEPED------VPIFLLLNAFALAR--KFEK 273
Query: 160 SSRFGKYLDIEFDYKG 175
YL E +G
Sbjct: 274 QLSLIDYLAEELFSQG 289
>gnl|CDD|187866 cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins; Predicted subunit of the Cascade
complex; signature gene for I-F subtype; also known as
Csy1 family.
Length = 377
Score = 27.7 bits (62), Expect = 4.1
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 22 LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARA----YRTRGPFQLP 77
L +NLH+R +RD I + L+ Y+AEL + QL
Sbjct: 267 LKGVKKENNLHIRQRRDAYLDEIIDELLD---------YAAELQNLLPAGWSAESECQLK 317
Query: 78 PH 79
Sbjct: 318 RA 319
>gnl|CDD|227633 COG5323, COG5323, Uncharacterized conserved protein [Function
unknown].
Length = 410
Score = 27.6 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 104 GESGSGKTQAASMVVYFIACATPG---TGPVLNAVRE 137
G GSGKT+A + V + A P G L+ RE
Sbjct: 43 GGRGSGKTRAGAEWVTWNALGKPSIALVGETLHDARE 79
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 27.0 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 98 QCII--VSGESGSGKTQAASMVV 118
+ II ++G SGSGKT AS +
Sbjct: 5 KPIIIGIAGGSGSGKTTVASTIY 27
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 27.3 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 100 IIVSGESGSGK-TQAASMVVY 119
I+V+G +GSGK T ASM+ Y
Sbjct: 125 ILVTGPTGSGKSTTLASMIDY 145
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 26.9 bits (60), Expect = 4.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 100 IIVSGESGSGKTQAASMVVYFIAC 123
+I+ GE+GSGKT + A
Sbjct: 3 VILQGEAGSGKTTLLQKIALLWAQ 26
>gnl|CDD|220312 pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This entry, typified by YPO2465 of
Yersinia pestis, is a CRISPR-associated (Cas) entry
strictly associated with the Ypest subtype of CRISPR/Cas
locus. It is designated Csy1, for CRISPR/Cas Subtype
Ypest protein 1.
Length = 378
Score = 27.3 bits (61), Expect = 5.0
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 22 LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARA----YRTRGPFQLP 77
L +NLH+R +RD I + L+ Y+AEL + QL
Sbjct: 268 LKGVKPENNLHIRQRRDAYLDEIIDELLD---------YAAELQNLLPAGWSAESECQLK 318
Query: 78 PH 79
Sbjct: 319 RA 320
>gnl|CDD|234011 TIGR02782, TrbB_P, P-type conjugative transfer ATPase TrbB. The
TrbB protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbB
is a homolog of the vir system VirB11 ATPase , and the
Flp pilus sytem ATPase TadA [Cellular processes,
Conjugation].
Length = 299
Score = 27.4 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGT 128
I+V G +GSGKT A+ ++ IA P
Sbjct: 135 ILVVGGTGSGKTTLANALLAEIAKNDPTD 163
>gnl|CDD|234203 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda.
Members of this protein family are Hda (Homologous to
DnaA). These proteins are about half the length of DnaA
and homologous over length of Hda. In the model species
Escherichia coli, the initiation of DNA replication
requires DnaA bound to ATP rather than ADP; Hda helps
facilitate the conversion of DnaA-ATP to DnaA-ADP [DNA
metabolism, DNA replication, recombination, and repair].
Length = 226
Score = 27.2 bits (61), Expect = 5.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 87 AYRWLRDRSEDQCIIVSGESGSGKT---QAAS 115
A R L D+ + + GESGSGK+ QAA
Sbjct: 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAAC 59
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 27.1 bits (60), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 96 EDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL 132
E Q + + GE+GSGK+ A M+ I P +G +L
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEIL 71
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 27.3 bits (60), Expect = 5.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
VVD + +D LL+P+ + + + R RD+I YI + L YK +I SA ++
Sbjct: 43 VVDRKI--FDRFLLEPICDPVDVLYDYFRIHRDNIDQYIVDRLFAYITYK--DIISALVS 98
Query: 66 RAY 68
+ Y
Sbjct: 99 KNY 101
>gnl|CDD|222005 pfam13245, AAA_19, Part of AAA domain.
Length = 73
Score = 25.4 bits (56), Expect = 6.1
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 94 RSEDQCIIVSGESGSGKTQ-AASMVVYFIA-----CATPGTGPVLNAVREKLKHIG 143
S +V G G+GKT AA+++ +A TG +RE+L +
Sbjct: 7 ASGRSLFVVDGGPGTGKTATAAAIIARLLAAGRSVLVVAPTGRAARRLRERLAALD 62
>gnl|CDD|182529 PRK10536, PRK10536, hypothetical protein; Provisional.
Length = 262
Score = 27.1 bits (60), Expect = 6.3
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 64 LARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC 123
+AR R P I A + +L+ Q I +GE+G GKT +I+
Sbjct: 47 MARDSRDTSP------ILARNEAQAHYLKAIESKQLIFATGEAGCGKT--------WISA 92
Query: 124 ATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
A +++ +++ P+L+A + L D + +F Y +D LGA
Sbjct: 93 AKAAEA-LIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA 148
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 27.2 bits (61), Expect = 6.8
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 19/49 (38%)
Query: 82 AIAGSAYRWLRDR---------SEDQCIIVSGESGSGKTQAASMVVYFI 121
+AG+A +WLRD SE V G VYF+
Sbjct: 304 FVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGG----------VYFV 342
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 26.2 bits (58), Expect = 6.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 100 IIVSGESGSGKTQAA 114
I+++G GSGKT A
Sbjct: 1 ILITGTPGSGKTTLA 15
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 26.3 bits (59), Expect = 6.9
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 100 IIVSGESGSGKTQAASMV-------VYFIACAT 125
I++SG SG GK+ + F T
Sbjct: 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHT 34
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 27.0 bits (60), Expect = 7.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 82 AIAGSAYRWLRD 93
AIAG+A +WLRD
Sbjct: 312 AIAGAAVQWLRD 323
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 26.7 bits (59), Expect = 7.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL 132
A L D +I++ +GSGKT A+++ A G VL
Sbjct: 16 AIEALLSGLRD--VILAAPTGSGKT-LAALLPALEALKRGKGGRVL 58
>gnl|CDD|225398 COG2842, COG2842, Uncharacterized ATPase, putative transposase
[General function prediction only].
Length = 297
Score = 26.6 bits (59), Expect = 7.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 50 TVNPYKPLNIYS--AELARAYRTRG----PFQLPPHIFAIAGSA--YRWLRDRSEDQCI- 100
+N YK + + A++A +G +L P + R S+ +
Sbjct: 39 YLNGYKG-DYATNEAKIAAFLEKKGVQAALEKLAPDFLETKTVRRIFFRTRPASKTGSLV 97
Query: 101 IVSGESGSGKTQAA 114
+V G +G GKTQAA
Sbjct: 98 VVYGYAGLGKTQAA 111
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 26.9 bits (60), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
II+SG +GSGKT +V I
Sbjct: 147 IIISGGTGSGKTTFLKSLVDEI 168
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 26.4 bits (59), Expect = 7.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
I ++G SGSGKT A ++ +
Sbjct: 2 IGIAGGSGSGKTTVAEEIIEQL 23
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 26.9 bits (60), Expect = 7.8
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 104 GESGSGKTQAASMVVYFIACATPGT----GPVLNAV-REKL-KHIGPL---LEAFGNAQT 154
G SGSGK+ A ++V + G+ G L RE KHIG L +E F T
Sbjct: 351 GPSGSGKSTLARLIVGIWPPTS-GSVRLDGADLKQWDRETFGKHIGYLPQDVELF--PGT 407
Query: 155 LKNDNSSRFGKYLDIE 170
+ +N +RFG+ D E
Sbjct: 408 VA-ENIARFGENADPE 422
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 26.7 bits (60), Expect = 8.3
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
IF +AGSA +WLRD
Sbjct: 307 IF-VAGSAIQWLRD 319
>gnl|CDD|132060 TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM
locus subfamily. Members of this protein are marked as
probable ATPases by the nucleotide binding P-loop motif
GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of
helicases, and extensive homology to ATPases of
MSHA-type pilus systems and to GspA proteins associated
with type II protein secretion systems [Protein fate,
Protein and peptide secretion and trafficking].
Length = 269
Score = 26.6 bits (59), Expect = 8.4
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 13/49 (26%)
Query: 73 PFQLPP----------HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKT 111
PFQL P H A+A Y L R + I+++GE G+GKT
Sbjct: 12 PFQLLPDPDFFYPSKGHKRAMAYLEYG-LSQR--EGFILITGEVGAGKT 57
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 26.8 bits (60), Expect = 8.7
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 74 FQLPPHIFAIAGSAYRWLRDRSED----QCIIVSGESGSGKTQAASMV 117
+ +F + + D S D + + + GESGSGK+ A ++
Sbjct: 290 YGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 26.6 bits (59), Expect = 9.1
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 101 IVSGESGSGKTQAA 114
IV GESGSGK+Q A
Sbjct: 47 IV-GESGSGKSQTA 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,700,718
Number of extensions: 887019
Number of successful extensions: 1266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 100
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)