RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18111
(186 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 264 bits (678), Expect = 1e-85
Identities = 83/176 (47%), Positives = 123/176 (69%)
Query: 9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAY 68
G D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY +AY
Sbjct: 6 KAEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAY 65
Query: 69 RTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGT 128
R +++PPH++A+A AYR +R E+QC+I+SGESG+GKT+A+ ++ F+ +
Sbjct: 66 NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125
Query: 129 GPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
P + + L PLLEAFGNA+TL+NDNSSRFGKY++++F+ G P+G ITN
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITN 181
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 248 bits (636), Expect = 7e-79
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 9/185 (4%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NI 59
+ D E D L L+E T + N+ +RY +D IYTY+ N+L+ VNPY + I
Sbjct: 47 AEEDSKKDVE----DNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 102
Query: 60 YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
YS+E ++Y+ + +PPH+FAIA A+R ++ Q IIVSGESG+GKT+ V+
Sbjct: 103 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 162
Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
++ + + +++ PLLEAFGNA+T++N+NSSRFGK+++I F+ K +G
Sbjct: 163 YLTESYGTGQD----IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVG 218
Query: 180 AHITN 184
+++
Sbjct: 219 GFVSH 223
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 243 bits (622), Expect = 1e-76
Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
+PP D +L L E + NL RY IYTY G VTVNPYK L +Y
Sbjct: 79 QNPP----KFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVY 134
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
+ E+ AYR + + PPHIF+I+ +AY+++ E+Q I+++GESG+GKT V+ +
Sbjct: 135 TPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQY 194
Query: 121 IACATPGTGPVLNAVREKLKHI-------GPLLEAFGNAQTLKNDNSSRFGKYLDIEFDY 173
A + P LEAFGNA+T++NDNSSRFGK++ I F
Sbjct: 195 FAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGA 254
Query: 174 KGDPLGAHITN 184
G A I
Sbjct: 255 TGKLASADIET 265
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 245 bits (628), Expect = 2e-76
Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
+P E D L L+E NL +RY +D IYTY G LV VNP+K + IY
Sbjct: 80 RNPIKFDGVE----DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIY 135
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
+ E+ ++ R ++ PHIFAI+ AYR + D ++Q ++++GESG+GKT+ V+ Y
Sbjct: 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195
Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
+ A + +++ P+LEAFGNA+T +N+NSS FGK+++I+F+ G G
Sbjct: 196 LASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISG 255
Query: 180 AHITN 184
A I +
Sbjct: 256 ASIQS 260
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 242 bits (619), Expect = 3e-76
Identities = 72/185 (38%), Positives = 105/185 (56%), Gaps = 7/185 (3%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNI 59
+P ++V G D L L E + NL +R+ IYTY G VLV +NPY+ L I
Sbjct: 63 RNPDILV----GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPI 118
Query: 60 YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
Y ++ AY + + PHIFA+A AY+ + +Q IIVSGESG+GKT +A +
Sbjct: 119 YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178
Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
+ A + V EK+ P++E+ GNA+T +NDNSSRFGKY++I FD + +G
Sbjct: 179 YFATVSGSASEA--NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236
Query: 180 AHITN 184
A++
Sbjct: 237 ANMRT 241
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 241 bits (617), Expect = 4e-76
Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 5/185 (2%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
+P G D L L+E NL +RY +D IYTY G LV VNP+K + IY
Sbjct: 80 RNPI----KFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIY 135
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
+ E+ ++ R ++ PHIFAI+ AYR + D ++Q ++++GESG+GKT+ V+ Y
Sbjct: 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195
Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
+ A + +++ P+LEAFGNA+T +N+NSSRFGK+++I+F+ G G
Sbjct: 196 LASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISG 255
Query: 180 AHITN 184
A I +
Sbjct: 256 ASIQS 260
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 244 bits (624), Expect = 6e-76
Identities = 77/189 (40%), Positives = 107/189 (56%), Gaps = 9/189 (4%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
M+PP +E D L L+E + + NL RY IYTY G V +NPYK L IY
Sbjct: 54 MNPPKFSKAE----DMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIY 109
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
+ + YR + ++PPH++A+ AYR + EDQ I+ +GESG+GKT+ V+ Y
Sbjct: 110 TEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 169
Query: 120 FIACATPGTGPVLNAVREKLKHI----GPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKG 175
A+ G V +L+ P+LEAFGNA+T+KNDNSSRFGK++ I FD G
Sbjct: 170 LAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 229
Query: 176 DPLGAHITN 184
+GA+I
Sbjct: 230 YIVGANIET 238
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 235 bits (601), Expect = 2e-73
Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
M+PP E D + L+E + + NL RY IYTY G + VNPY+ L IY
Sbjct: 77 MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
+ + YR + ++PPH+F++A +AY+ + E+Q +++GESG+GKT+ V+ Y
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192
Query: 120 FIACATPGTGPVLNAVREKLKHI-------GPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
A A +K + P+LEA+GNA+T +N+NSSRFGK++ I F
Sbjct: 193 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 252
Query: 173 YKGDPLGAHITN 184
G GA I
Sbjct: 253 PTGKIAGADIET 264
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 231 bits (591), Expect = 4e-71
Identities = 71/185 (38%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNI 59
+P ++V D L L E + NL +R+ IYTY G VLV +NPY+ L I
Sbjct: 63 RNPDILVGEN----DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPI 118
Query: 60 YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
Y ++ AY + + PHIFA+A AY+ + +Q IIVSGESG+GKT +A +
Sbjct: 119 YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178
Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
+ A + V EK+ P++E+ GNA+T +NDNSSRFGKY++I FD + +G
Sbjct: 179 YFATVSGSASEA--NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236
Query: 180 AHITN 184
A++
Sbjct: 237 ANMRT 241
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 218 bits (558), Expect = 1e-66
Identities = 79/198 (39%), Positives = 110/198 (55%), Gaps = 16/198 (8%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
M+PP E D L L+E + + NL RY IYTY G V +NPYK L IY
Sbjct: 77 MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
S ++ Y+ + ++PPHI+AIA +AYR + EDQ I+ +GESG+GKT+ V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IA------------CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
+A T G + ++L P+LEAFGNA+T+KNDNSSRFGK++
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHITNCK 186
I FD G +GA+I
Sbjct: 253 INFDVTGYIVGANIETYL 270
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-05
Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 82/239 (34%)
Query: 5 LVVDSETGAWDCVLLDPLS--EDTFIS--NLH-------------LRYKRDHIYTYIGNV 47
LV S+ G +D VL L+ E+ ++ ++H L ++ I YI
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 48 LVTVNPYKPL--------------NIYSA------------ELARAYRTRGPFQLPPHIF 81
++ P+ + + EL Y+T + I
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDLIK 189
Query: 82 AIAG-------------SAY-------RWLRDRSE--DQCIIVSGE-S--GSGKTQAASM 116
A + WL + S D+ ++S S G Q A
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH- 248
Query: 117 VVYFIACATPGTGPVLNAVREKLK----HIGPLLEA--FGNAQTLKN--DNSSRFGKYL 167
Y + G P +R LK H L+ A + ++ + + L
Sbjct: 249 --YVVTAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Score = 31.9 bits (72), Expect = 0.11
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 66/200 (33%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDH----IY-TYIGNVLVTVNPYKPLNIYSAELARAYR 69
D V+ +P++ + R++ I+ T + L T +K +N E + +Y
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN----EHSTSYT 1718
Query: 70 TRGP--------F-QLPPHIFAIAGSAYRWLRDRSEDQCIIV----S-GE-------SGS 108
R F Q P + + +A+ L+ + S GE +
Sbjct: 1719 FRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 109 GKTQAASMVVY----FIACATP-----GTGPVLNAVR----------EKLKHI------- 142
++ VV+ + A P + + A+ E L+++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 143 -GPLLEAFGNAQTLKNDNSS 161
G L+E N N
Sbjct: 1837 TGWLVEI---V----NYNVE 1849
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 6e-04
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 34/119 (28%)
Query: 14 WDCVLLDPLSEDTFISNLHLR---YKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRT 70
+ L+ P+ + ++ R +RD +Y + N+ + R
Sbjct: 93 F---LMSPIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFAKYNVSRLQPYLKLRQ 142
Query: 71 RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV--YFIACATPG 127
L + + +++ G GSGKT A V Y + C
Sbjct: 143 -------------------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Score = 31.7 bits (71), Expect = 0.15
Identities = 25/171 (14%), Positives = 49/171 (28%), Gaps = 45/171 (26%)
Query: 7 VDSETGAWDCVLLD--PLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAEL 64
+D ETG D + ED F+ N + +D ++L + + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSIL-SKEEIDHIIMSKDAV 61
Query: 65 ARAYRTRGPFQLPPH--IFAIAGSA----YRWLRDRSEDQCIIVSGESGSGKTQAASMVV 118
+ R + Y++L + + Q + M
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----------QPSMMTR 110
Query: 119 YFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDI 169
+I R++L + + Q N SR YL +
Sbjct: 111 MYIEQ------------RDRL---------YNDNQVFAKYNVSRLQPYLKL 140
Score = 30.6 bits (68), Expect = 0.30
Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 60/160 (37%)
Query: 29 SNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAY 88
+L Y + Y++IG + ++ + E L +F +
Sbjct: 462 DDLIPPYLDQYFYSHIG--------H---HLKNIEHPER------MTLFRMVFL----DF 500
Query: 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEA 148
R+L + I + A+ L ++ +I
Sbjct: 501 RFLEQK-----IRHDSTA---------------WNASGSILNTLQQLKFYKPYI------ 534
Query: 149 FGNAQTLKNDNSSRFGKYLD--IEFDYKGDPLGAHITNCK 186
DN ++ + ++ ++F K + ++ K
Sbjct: 535 --------CDNDPKYERLVNAILDFLPK---IEENLICSK 563
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.047
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 16/44 (36%)
Query: 96 EDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL--NAVRE 137
E Q + K AS+ +Y + P L A E
Sbjct: 18 EKQAL---------KKLQASLKLY-----ADDSAPALAIKATME 47
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 31.5 bits (72), Expect = 0.12
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 95 SEDQCIIVSGESGSGKT 111
S++ +I+ G +G GKT
Sbjct: 74 SQNSVVIIRGATGCGKT 90
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 29.6 bits (67), Expect = 0.55
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ V G++G GKT ++
Sbjct: 26 TILGVLGKNGVGKTTVLKIL 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 29.6 bits (67), Expect = 0.65
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
Q + + G +G GK+ A ++
Sbjct: 104 QVLGLVGTNGIGKSTALKIL 123
Score = 26.5 bits (59), Expect = 7.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 104 GESGSGKTQAASMVVYFIACATPGTGPVLNA--VREKLKHIGP 144
GE+G+GKT ++ + P G + V K + I P
Sbjct: 385 GENGTGKTTLIKLLAGAL---KPDEGQDIPKLNVSMKPQKIAP 424
>2kcd_A Uncharacterized protein SSP0047; alpha beta, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Staphylococcus saprophyticus subsp}
Length = 120
Score = 28.5 bits (63), Expect = 0.65
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 9 SETGAWDCVLLDPLSEDT----FISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAEL 64
W+C ++ +++D ++ L K TY + L N Y + Y +L
Sbjct: 18 PRDEKWECESIEEVADDILPDQYVRLGPLSNKILQTNTYYSDTLHKSNIYPFILYYQKQL 77
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.9 bits (64), Expect = 0.82
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 91 LRDRSEDQCIIVSGESGSGKTQAA 114
+ D +++SG GSGK+ A
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIA 26
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.8 bits (65), Expect = 1.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ + G +G+GK+ A ++
Sbjct: 48 MVVGIVGPNGTGKSTAVKIL 67
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 1.3
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ + G +G+GKT A ++
Sbjct: 118 MVVGIVGPNGTGKTTAVKIL 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.5 bits (63), Expect = 1.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 99 CIIVSGESGSGKTQAASMVV 118
I + G +G+GKT V+
Sbjct: 47 NIFIYGLTGTGKTAVVKFVL 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 28.6 bits (63), Expect = 1.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 99 CIIVSGESGSGKTQAASMVV 118
+ G +G+GKT + +
Sbjct: 47 SNLFLGLTGTGKTFVSKYIF 66
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 28.4 bits (64), Expect = 1.4
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 100 IIVSGESGSGKT 111
I+V+GE+GSGKT
Sbjct: 178 IVVAGETGSGKT 189
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.1 bits (63), Expect = 1.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 100 IIVSGESGSGKT 111
+IV G +GSGKT
Sbjct: 174 VIVCGGTGSGKT 185
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 100 IIVSGESGSGKT 111
IV GE+ SGKT
Sbjct: 263 AIVVGETASGKT 274
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 28.2 bits (62), Expect = 1.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 98 QCIIVSGESGSGKTQAASMVV 118
+ G G+GKT +
Sbjct: 45 PRATLLGRPGTGKTVTLRKLW 65
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.9 bits (62), Expect = 1.9
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 21/70 (30%)
Query: 62 AELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQA-------- 113
+L R R + +AG +E + ++V+G +G+GK+
Sbjct: 27 GKLKRMTREKA------KQVTVAGVPMPR---DAEPRHLLVNGATGTGKSVLLRELAYTG 77
Query: 114 ----ASMVVY 119
MV+
Sbjct: 78 LLRGDRMVIV 87
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 27.7 bits (61), Expect = 2.3
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 24 EDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELAR-AYRTRGPFQLPPHIFA 82
E IS L H YT + + ++ + +Y + PH A
Sbjct: 118 EFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLA 177
Query: 83 IA 84
A
Sbjct: 178 YA 179
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 27.8 bits (61), Expect = 2.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 100 IIVSGESGSGKTQAASMV 117
++ +G GKT A M+
Sbjct: 26 CLIVLPTGLGKTLIAMMI 43
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 27.6 bits (60), Expect = 2.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 100 IIVSGESGSGKTQAASMVVY 119
I+ +G GKT + ++
Sbjct: 31 TIICAPTGCGKTFVSLLICE 50
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 27.3 bits (61), Expect = 2.8
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 86 SAYRWLRDRSEDQCIIVSGES 106
Y L Q ++V G+
Sbjct: 152 RVYDQLVSEVGHQNVVVMGDG 172
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 27.6 bits (60), Expect = 2.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 100 IIVSGESGSGKTQAASMVVY 119
I+ +G GKT + ++
Sbjct: 22 TIICAPTGCGKTFVSLLICE 41
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 27.2 bits (60), Expect = 2.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 99 CIIVSGESGSGKTQAA 114
IIV+G +GKT +
Sbjct: 7 LIIVTGHPATGKTTLS 22
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.5 bits (61), Expect = 2.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 89 RWLRD-RSEDQCIIVSGESGSGKTQAASMVV 118
+ L E + + G +G GK+ A+ V
Sbjct: 138 QKLWKLNGEPGWVTIYGMAGCGKSVLAAEAV 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 27.2 bits (59), Expect = 3.1
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV 118
I Y L S+++ ++ S K Q + V+
Sbjct: 28 DFTRIFLPIYDSLMS-SQNKLFYITNADDSTKFQLVNDVM 66
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 27.6 bits (60), Expect = 3.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 100 IIVSGESGSGKTQAASMVVY 119
++ +GSGKT + ++
Sbjct: 25 ALICAPTGSGKTFVSILICE 44
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 27.3 bits (60), Expect = 3.3
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 74 FQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL- 132
LP + + + + + + G SGKT A+ ++ G L
Sbjct: 146 CLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199
Query: 133 -NAVREKLKH-IGPLLEAF 149
N ++L +G ++ F
Sbjct: 200 VNLPLDRLNFELGVAIDQF 218
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 27.1 bits (61), Expect = 3.3
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 82 AIAGSAYRWLRD 93
AGS WL
Sbjct: 312 GTAGSGVSWLLK 323
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.8 bits (59), Expect = 3.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 100 IIVSGESGSGKTQAA 114
I ++G G GKT A
Sbjct: 8 IWINGPFGVGKTHTA 22
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 26.4 bits (58), Expect = 4.5
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 100 IIVSGESGSGKTQAASMVV 118
I++G +G GK+ +
Sbjct: 5 YIITGPAGVGKSTTCKRLA 23
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
I + GS +WLRD
Sbjct: 307 IA-VTGSLVQWLRD 319
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
IF +AG+A +WLRD
Sbjct: 327 IF-VAGAAVQWLRD 339
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 26.8 bits (59), Expect = 5.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 18 LLDPLSEDTFISNLHLRYKRDHIYTYIG 45
+ + + E+ N + Y RD Y+Y G
Sbjct: 120 VYNIVMENKDKLNSAIVYDRDFQYSYFG 147
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 26.7 bits (60), Expect = 5.6
Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
IF ++GSA +WLRD
Sbjct: 308 IF-VSGSAIQWLRD 320
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 26.7 bits (60), Expect = 5.6
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
IF +AGSA +WLRD
Sbjct: 307 IF-VAGSAIQWLRD 319
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 26.7 bits (60), Expect = 5.8
Identities = 7/14 (50%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
+F +AG++ +WLRD
Sbjct: 305 VF-MAGASIQWLRD 317
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 26.4 bits (59), Expect = 5.8
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 100 IIVSGESGSGKT 111
+++ G SG GK
Sbjct: 26 LVICGPSGVGKG 37
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 26.4 bits (59), Expect = 5.9
Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
IF + G+A +WLRD
Sbjct: 299 IF-VTGAAVQWLRD 311
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 26.3 bits (59), Expect = 6.1
Identities = 6/14 (42%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Query: 80 IFAIAGSAYRWLRD 93
+F +AG+A WL++
Sbjct: 303 LF-VAGAAVGWLKE 315
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 26.3 bits (58), Expect = 6.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 100 IIVSGESGSGKTQAASMVVY 119
II+ +GSGKT+ A +
Sbjct: 51 IIICLPTGSGKTRVAVYIAK 70
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 26.0 bits (58), Expect = 7.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 100 IIVSGESGSGKT 111
++V G SG GK
Sbjct: 15 LVVCGPSGVGKG 26
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 25.8 bits (57), Expect = 7.4
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 100 IIVSGESGSGKT 111
II+ G K+
Sbjct: 4 IILEGPDCCFKS 15
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 26.2 bits (57), Expect = 8.0
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 100 IIVSGESGSGKT 111
++ G++GSGK+
Sbjct: 26 NLIIGQNGSGKS 37
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 25.8 bits (56), Expect = 8.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ ++V G SGSGKT A V
Sbjct: 30 RHVVVMGVSGSGKTTIAHGV 49
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 25.9 bits (56), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 99 CIIVSGESGSGKT 111
++V GESG GK+
Sbjct: 20 TLMVVGESGLGKS 32
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
oxidoreductase, DNA replication, allosteric enzyme,
nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Length = 761
Score = 26.1 bits (58), Expect = 8.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 ETGAWDCVLLDPLSEDTF-ISNLHLRYKRDHIYTYIG 45
E G +D LL+ +E+ F + + + RD ++Y
Sbjct: 111 EMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAA 147
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.3 bits (58), Expect = 8.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 98 QCIIVSGESGSGKTQA 113
Q +I+ G++G GKT
Sbjct: 924 QALILVGKAGCGKTAT 939
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 25.4 bits (55), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 100 IIVSGESGSGKTQAASMV 117
++ G SGSGK+ AS V
Sbjct: 11 YVLMGVSGSGKSAVASEV 28
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 26.0 bits (57), Expect = 9.2
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 87 AYRWLRDRSEDQCIIVSGES 106
++ ++ + + I G S
Sbjct: 85 SFDAIQSQYSNCPIFTFGRS 104
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 25.7 bits (56), Expect = 9.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 100 IIVSGESGSGKTQAASMVV 118
++ SG+ SGK +
Sbjct: 14 LLFSGKRKSGKDFVTEALQ 32
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 25.6 bits (57), Expect = 9.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 98 QCIIVSGESGSGKT 111
+++S SG GKT
Sbjct: 28 VILVLSSPSGCGKT 41
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 25.5 bits (57), Expect = 9.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 100 IIVSGESGSGKT 111
I++SG SG+GK+
Sbjct: 4 IVISGPSGTGKS 15
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 25.7 bits (56), Expect = 10.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 90 WLRDRSEDQCIIVS--GESGSGKTQAASMVVY 119
L + + + G +GSGK+ AS +
Sbjct: 143 KLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,944,135
Number of extensions: 166894
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 87
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)