RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18111
(186 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 227 bits (580), Expect = 6e-72
Identities = 83/175 (47%), Positives = 123/175 (70%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
G D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY +AY R
Sbjct: 1 GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGR 60
Query: 72 GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
+++PPH++A+A AYR +R E+QC+I+SGESG+GKT+A+ ++ F+ + P
Sbjct: 61 YKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 120
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
+ + L PLLEAFGNA+TL+NDNSSRFGKY++++F+ G P+G ITN
Sbjct: 121 GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYL 175
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 218 bits (555), Expect = 4e-68
Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 12/184 (6%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L L+E + + NL RY IYTY G V +NPYK L IYS ++ Y+ +
Sbjct: 9 DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRH 68
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC----------- 123
++PPHI+AIA +AYR + EDQ I+ +GESG+GKT+ V+ ++A
Sbjct: 69 EMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDT 128
Query: 124 -ATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
T G + ++L P+LEAFGNA+T+KNDNSSRFGK++ I FD G +GA+I
Sbjct: 129 SITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANI 188
Query: 183 TNCK 186
Sbjct: 189 ETYL 192
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 216 bits (550), Expect = 3e-67
Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 12 GAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRT 70
G D L L E + NL +R+ IYTY G VLV +NPY+ L IY ++ AY
Sbjct: 8 GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSG 67
Query: 71 RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP 130
+ + PHIFA+A AY+ + +Q IIVSGESG+GKT +A + + A +
Sbjct: 68 QNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASE 127
Query: 131 VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
V EK+ P++E+ GNA+T +NDNSSRFGKY++I FD + +GA++
Sbjct: 128 --ANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYL 181
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 214 bits (546), Expect = 8e-67
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 15 DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
D L L+E NL +RY +D IYTY G LV VNP+K + IY+ E+ ++ R
Sbjct: 43 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRN 102
Query: 75 QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPGTGPVLN 133
++ PHIFAI+ AYR + D ++Q ++++GESG+GKT+ V+ Y + A
Sbjct: 103 EVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 162
Query: 134 AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
+ +++ P+LEAFGNA+T +N+NSSRFGK+++I+F+ G GA I +
Sbjct: 163 VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYL 215
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 215 bits (548), Expect = 1e-66
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
M+PP E D + L+E + + NL RY IYTY G + VNPY+ L IY
Sbjct: 29 MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 84
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
+ + YR + ++PPH+F++A +AY+ + E+Q +++GESG+GKT+ V+ +
Sbjct: 85 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 144
Query: 121 IACATPGTGPVLN--------AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
+A ++ +++ P+LEA+GNA+T +N+NSSRFGK++ I F
Sbjct: 145 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 204
Query: 173 YKGDPLGAHITNCK 186
G GA I
Sbjct: 205 PTGKIAGADIETYL 218
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 214 bits (545), Expect = 4e-66
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 12/194 (6%)
Query: 1 MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
M+PP E D ++ L E + NL RY IYTY G VTVNPYK L +Y
Sbjct: 31 MNPPKYDKIE----DMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVY 86
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
+ ++ AYR + + PPHIF+I+ +AY+++ E+Q I+++GESG+GKT V+ +
Sbjct: 87 NPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQY 146
Query: 121 IACATPG--------TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
A +G + + +++ PLLEAFGNA+T++NDNSSRFGK++ I F
Sbjct: 147 FATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFG 206
Query: 173 YKGDPLGAHITNCK 186
G A I
Sbjct: 207 ATGKLASADIETYL 220
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 31.0 bits (69), Expect = 0.062
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVRE 137
R + + I+ G+GKT+ + A +L R
Sbjct: 5 IFRKK---RLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRV 49
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 0.45
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
+L R R + +AG + +E + ++V+G +G+GK+ + Y
Sbjct: 23 GGKLKRMTREKAKQ------VTVAGVP---MPRDAEPRHLLVNGATGTGKSVLLRELAY 72
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.7 bits (60), Expect = 0.86
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIG 143
+G GSGKTQ + P K +
Sbjct: 37 TEFAGVFGSGKTQIMHQSC--VNLQNPEFLFYDEEAVSKGEVAQ 78
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 26.7 bits (58), Expect = 1.1
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 98 QCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKL 139
Q + +GSGK+ A A G ++
Sbjct: 9 QVAHLHAPTGSGKS-----TKVPAAYAAQGYKVLVLNPSVAA 45
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.9 bits (58), Expect = 1.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ I++G +G GK+ +
Sbjct: 3 KLYIITGPAGVGKSTTCKRL 22
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.1 bits (58), Expect = 1.3
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGTGP 130
+ GE +GKTQ + G
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGG 56
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus
rattus) [TaxId: 10117]}
Length = 72
Score = 25.6 bits (56), Expect = 1.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 6 VVDSETGAWDCVLLD 20
V E G W C+L +
Sbjct: 46 VQAPEAGVWQCLLSE 60
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.9 bits (58), Expect = 1.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ II++G S +GK+ +
Sbjct: 4 RMIILNGGSSAGKSGIVRCL 23
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.6 bits (57), Expect = 1.4
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 98 QCIIVSGESGSGKTQAASMVVYFIAC 123
++ G+GKT+ +
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAECA 33
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 26.9 bits (58), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 93 DRSEDQCIIVSGESGSGK-TQAASMVVYF 120
++S+ + V G GSGK TQ A++V F
Sbjct: 2 EKSKPNVVFVLGGPGSGKGTQCANIVRDF 30
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.0 bits (58), Expect = 1.5
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 98 QCIIVSGESGSGKT 111
+V G +GK+
Sbjct: 30 PITLVLGLRRTGKS 43
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.8 bits (58), Expect = 1.5
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 100 IIVSGESGSGKT 111
+++SG SG+GK+
Sbjct: 3 VVLSGPSGAGKS 14
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 26.7 bits (57), Expect = 1.6
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC 123
+ +++ G +G+GK ++ I
Sbjct: 25 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 59
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.4 bits (57), Expect = 1.7
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 100 IIVSGESGSGKT 111
I++SG SG+GK+
Sbjct: 4 IVISGPSGTGKS 15
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.5 bits (57), Expect = 1.8
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 87 AYRWLRDRSEDQ----CIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA--VREKLK 140
L + ++ G+ GSGKT + I T G V++ +++
Sbjct: 18 NLEELIQGKKAVESPTAFLLGGQPGSGKT----SLRSAIFEETQGNVIVIDNDTFKQQHP 73
Query: 141 HIGPLLEAFGN--AQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
+ L++ + + + ++ + D + +
Sbjct: 74 NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGR 119
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 26.3 bits (58), Expect = 2.0
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLK-HIGPLL 146
+L+ + C++ G + +GK+ ++FI G V++ V + PL
Sbjct: 44 KSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI------QGAVISFVNSTSHFWLEPLT 97
Query: 147 EAFGNAQTLKNDNSSRFGKYLDI 169
+ + +D ++ Y D
Sbjct: 98 DTKVA---MLDDATTTCWTYFDT 117
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 72
Score = 25.2 bits (55), Expect = 2.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 6 VVDSETGAWDCVLLD 20
V++ E G W C+L D
Sbjct: 44 VLNPEAGMWQCLLSD 58
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.4 bits (57), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 100 IIVSGESGSGKTQAASMVVYFIA 122
I+ +G +G+GKT S V
Sbjct: 29 ILATGATGTGKTLLVSRFVENAC 51
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 100 IIVSGESGSGKTQAASMV 117
+++SG GSGK+ A +
Sbjct: 7 LLLSGHPGSGKSTIAEAL 24
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 26.5 bits (57), Expect = 2.4
Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 15/141 (10%)
Query: 46 NVLVTVNPYKPLNIYSA-ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSG 104
+VL+ V+ + +A + + A+ + D + + + V
Sbjct: 2 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPD--DMRAMGVEI 59
Query: 105 ESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFG 164
E AA + G G L A P+L N R G
Sbjct: 60 EVVDADQHAADGCELVLVLG--GDGTFLRAAELARNASIPVLGV----------NLGRIG 107
Query: 165 KYLDIEFDYKGDPLGAHITNC 185
+ E + L +
Sbjct: 108 FLAEAEAEAIDAVLEHVVAQD 128
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 2.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 100 IIVSGESGSGKT 111
IVS SG+GK+
Sbjct: 5 YIVSAPSGAGKS 16
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.0 bits (57), Expect = 2.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 97 DQCIIVSGESGSGKTQAA 114
+ ++++GESG GK A
Sbjct: 23 ECPVLITGESGVGKEVVA 40
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 2.6
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 64 LARAYRTRGPFQLP---PHIFAIAGSAYRWLRDRSED-QCIIVSGESGSGKTQAASMVVY 119
+ +Y P +LP + + WLR+ + G G+GKT +
Sbjct: 9 FSPSYV---PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE 65
Query: 120 FIACATP 126
T
Sbjct: 66 LYKDKTT 72
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 2.6
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 100 IIVSGESGSGKT 111
+++SG S GK+
Sbjct: 5 VVLSGPSAVGKS 16
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 25.8 bits (55), Expect = 2.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACA 124
GE +GKTQ + +
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLP 64
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 25.8 bits (55), Expect = 2.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 100 IIVSGESGSGKTQAASMV 117
++ G SGSGK+ AS V
Sbjct: 9 YVLMGVSGSGKSAVASEV 26
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 2.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 98 QCIIVSGESGSGKT 111
+ + ++G G GKT
Sbjct: 2 RHVFLTGPPGVGKT 15
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 25.7 bits (55), Expect = 2.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGTG 129
+++ G SGK+ ++V GTG
Sbjct: 5 LLLLGAGESGKS---TIVKQMKIIHEAGTG 31
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 25.6 bits (55), Expect = 3.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 100 IIVSGESGSGK-TQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKND 158
I++ G G+GK TQA +V + TG + A ++ +G ++F + L D
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHI-STGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 159 N 159
Sbjct: 62 E 62
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.8 bits (55), Expect = 3.1
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 98 QCIIVSGESGSGKTQAASMVVYFIACATP 126
+ G+GK+ A + IA
Sbjct: 30 TVGALVSPGGAGKSMLALQLAAQIAGGPD 58
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 3.2
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 100 IIVSGESGSGKT 111
+++ G G G+
Sbjct: 6 LVLLGAHGVGRR 17
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 100 IIVSGESGSGKTQAASMVVYFIAC 123
+VSG SG+GKT + +Y
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGII 52
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 25.8 bits (56), Expect = 3.6
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 3 PPLVVDSETGAWDCVLLDPLSED-TFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYS 61
+V +S A V+LD + + + + D Y + ++ ++ I +
Sbjct: 73 DVIVRNSGGLA---VVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIEA 129
Query: 62 AELARAYRTRGPFQLPPHIFAIAGSAYRWLRDR 94
E+ +Y G + L AG + R +R
Sbjct: 130 REIVGSYC-PGSYDLSIDGKKFAGISQRRIRGG 161
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.3 bits (54), Expect = 3.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 100 IIVSGESGSGKTQAASMVVYFIA 122
II++GE G GKT +V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.4 bits (54), Expect = 4.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 100 IIVSGESGSGKTQAASMVV 118
V GE GSGKTQ A +
Sbjct: 39 TEVFGEFGSGKTQLAHTLA 57
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 25.4 bits (54), Expect = 4.1
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 100 IIVSGESGSGKTQAASMVVYFIACATPGTGP 130
+ GE +GK+Q + G
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.1 bits (53), Expect = 4.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 100 IIVSGESGSGK-TQAASMV 117
I+ G GSGK T A +
Sbjct: 5 ILTIGCPGSGKSTWAREFI 23
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 25.3 bits (55), Expect = 4.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 104 GESGSGKTQAASMVVYFIACATPGTGPVL 132
G +G+GK+ + +A T G G +
Sbjct: 32 GPNGAGKSTLLAR----MAGMTSGKGSIQ 56
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.0 bits (54), Expect = 4.8
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 99 CIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPL 145
+ ++G+ G+GKT ++ I P V E +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMI 81
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.1 bits (53), Expect = 5.1
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG 127
+ ++ ++ +G GKT A M+ + G
Sbjct: 19 AKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGG 53
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 25.0 bits (53), Expect = 6.0
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
+V G+ GKT +++ +
Sbjct: 6 CVVVGDGAVGKT---CLLISYT 24
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 24.6 bits (52), Expect = 6.4
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
+ V G++ SGK+ S++ F+
Sbjct: 8 LGVLGDARSGKS---SLIHRFL 26
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 24.6 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
I+V G+S GKT +++ F
Sbjct: 5 IVVVGDSQCGKT---ALLHVFA 23
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 24.5 bits (52), Expect = 7.0
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 100 IIVSGESGSGK-TQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKND 158
+++ G G+GK TQA ++ F A TG +L + K +G + + L +D
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63
Query: 159 NSSRFGKYLDIEFD 172
+ ++ +
Sbjct: 64 DIMVNMIKDELTNN 77
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 24.6 bits (53), Expect = 7.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 98 QCIIVSGESGSGKTQAASMVVYFIAC 123
+ ++ G +G+GKT ++ F
Sbjct: 27 EYFVILGPTGAGKTLFLELIAGFHVP 52
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 24.6 bits (52), Expect = 7.2
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 99 CIIVSGESGSGK-TQAASMVVYF 120
I V G G+GK TQ +V +
Sbjct: 10 VIFVLGGPGAGKGTQCEKLVKDY 32
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 24.5 bits (52), Expect = 7.3
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 100 IIVSGESGSGK-TQAASMVVYF 120
+++SG SGK TQ + +
Sbjct: 6 VMISGAPASGKGTQCELIKTKY 27
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 24.5 bits (52), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 98 QCIIVSGESGSGK-TQAASMVVYF 120
+ I V G GSGK TQ +V +
Sbjct: 9 KIIFVVGGPGSGKGTQCEKIVQKY 32
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.6 bits (52), Expect = 7.7
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
+ + G +G GK+ ++VV F+
Sbjct: 5 LAIFGRAGVGKS---ALVVRFL 23
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 24.5 bits (53), Expect = 7.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ +I+ G SG GKT M+
Sbjct: 30 EFMILLGPSGCGKTTTLRMI 49
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 24.4 bits (53), Expect = 8.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 104 GESGSGKTQAASMV 117
G SGSGK+ +
Sbjct: 35 GSSGSGKSTFLRCI 48
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 24.7 bits (53), Expect = 8.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 98 QCIIVSGESGSGKTQAASMV 117
+ + G SG+GKT ++
Sbjct: 32 ERFGILGPSGAGKTTFMRII 51
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 24.5 bits (52), Expect = 8.2
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 100 IIVSGESGSGK-TQAASMVVYF 120
+ V G G+GK TQ A +V +
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKY 25
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 24.4 bits (52), Expect = 8.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 99 CIIVSGESGSGKTQAASMVVYFI 121
I ++G S SGK+ A + + +
Sbjct: 26 TIWLTGLSASGKSTLAVELEHQL 48
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 24.3 bits (52), Expect = 8.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 49 VTVNPYKPLNIYSAELARAYRTRGP 73
+TVN +KP Y + G
Sbjct: 9 ITVNKFKPKTPYVGRCLLNTKITGD 33
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 24.2 bits (51), Expect = 8.6
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 100 IIVSGESGSGKTQAASMVVYFI 121
++V G G GK+ ++ + FI
Sbjct: 9 LVVVGGGGVGKS---ALTIQFI 27
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 24.6 bits (53), Expect = 9.0
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
+ + + + + G SGKT A+ ++
Sbjct: 147 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 177
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 24.1 bits (51), Expect = 9.0
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 100 IIVSGESGSGK-TQAASMVVYF 120
+++ G G+GK TQA +V +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAY 24
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 24.1 bits (52), Expect = 9.3
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 97 DQCIIVSGESGSGKTQAA 114
++++G SG GK++ A
Sbjct: 15 GVGVLLTGRSGIGKSECA 32
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 24.4 bits (52), Expect = 9.7
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 89 RWLRDRSEDQ--CIIVSGESGSGKTQAASMVV 118
+ L + + + + G +GSGK+ AS +
Sbjct: 34 KKLDEMCDLDSFFLFLHGRAGSGKSVIASQAL 65
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.2 bits (51), Expect = 9.8
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 100 IIVSGESGSGKT 111
+ + SG+GKT
Sbjct: 5 LAFAAWSGTGKT 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.427
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 719,467
Number of extensions: 31224
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 77
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)