BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18112
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F
Sbjct: 266 SRVVFQSTSERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEDEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F
Sbjct: 266 SRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEDEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F
Sbjct: 266 SRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEDEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S + F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDEDEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 335
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 336 KITRQAMD 343
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 335
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 336 KITRQAMD 343
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 324
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 325 KITRQAMD 332
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 265 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 323
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 324 KITRQAMD 331
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 335
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 336 KITRQAMD 343
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S F
Sbjct: 277 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVSDSEEF 335
Query: 77 PSSRRDYD 84
+R+ D
Sbjct: 336 KITRQAMD 343
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SRVTYQ ERN+HIFYQLL A
Sbjct: 275 SRVTYQQSAERNYHIFYQLLSPA 297
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 232 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 272
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 232 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 272
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 233 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 273
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 233 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 273
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 233 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 273
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 232 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 272
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 232 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 272
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 232 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 272
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 230 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 270
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 242 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 282
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 229 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 269
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 242 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 282
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 270 SRVTYQQSAERNYHIFYQICSNA-IPELNDVMLVTPDSGLYSFINQGCLTV 319
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 270 SRVTYQQSAERNYHIFYQICSNA-IPELNDVMLVTPDSGLYSFINQGCLTV 319
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 265 SRVTYQQSAERNYHIFYQICSNA-IPELNDVMLVTPDSGLYSFINQGCLTV 314
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 270 SRVTYQQSAERNYHIFYQICSNA-IPELNDVMLVTPDSGLYSFINQGCLTV 319
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 266 SRVTYQQSAERNYHIFYQICSNA-IPELNDVMLVTPDSGLYSFINQGCLTV 315
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 272 SRVTYQQSAERNYHIFYQICSNA-IPELNEVMLITPDSGLYSFINQGCLTV 321
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRVTYQ ERN+HIFYQ+ A + L V + P + + C TV
Sbjct: 271 SRVTYQQSAERNYHIFYQICSNA-IPELNEVMLITPDSGLYSFINQGCLTV 320
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLL 36
++S DIE + SRVT+Q P ER++HIFYQ++
Sbjct: 257 LASADIETYLL---EKSRVTFQLPAERSYHIFYQIM 289
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 YDIEMRIATGASM-------SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFR 56
+D RI GA+M SRV +QA ERN+HIFYQL A + + + + F
Sbjct: 228 FDKRYRI-IGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFH 286
Query: 57 FGR 59
+ +
Sbjct: 287 YTK 289
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 YDIEMRIATGASM-------SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFR 56
+D RI GA+M SRV +QA ERN+HIFYQL A + + + + F
Sbjct: 228 FDKRYRI-IGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFH 286
Query: 57 FGR 59
+ +
Sbjct: 287 YTK 289
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLL 36
++S DIE + SRVT+Q P ER++HIFYQ++
Sbjct: 260 LASADIETYLL---EXSRVTFQLPAERSYHIFYQIM 292
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLL 36
++S DIE + SRVT+Q P ER++HIFYQ++
Sbjct: 257 LASADIETYLL---EXSRVTFQLPAERSYHIFYQIM 289
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 YDIEMRIATGASM-------SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFR 56
+D RI GA+M SRV +QA ERN+HIFYQL A + + + + F
Sbjct: 228 FDKRYRI-IGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFH 286
Query: 57 FGR 59
+ +
Sbjct: 287 YTK 289
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 1 MSSYDIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLL 44
++S DIE + SRV +Q ER++HIFYQ+L LL
Sbjct: 258 LASADIETYLL---EKSRVIFQLKAERDYHIFYQILSNKKPELL 298
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 17 SRVTYQAPGERNFHIFYQLLVG 38
SRV + GER+FHIFYQ+L G
Sbjct: 187 SRVVGRTQGERSFHIFYQMLKG 208
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 17 SRVTYQAPGERNFHIFYQLLVG 38
SRV + GER+FHIFYQ+L G
Sbjct: 187 SRVVGRTQGERSFHIFYQMLKG 208
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 32.3 bits (72), Expect = 0.060, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 42 HLLRVVNMAEPMRFRFGRLQHTCYTVAT-------TSVDTIFPSSRRDYDPTDEPLREED 94
H LR++N + F+ + HT +A +VD++F + + YD + R D
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPD 284
Query: 95 RIWFREELG 103
WF G
Sbjct: 285 NYWFNVTFG 293
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 42 HLLRVVNMAEPMRFRFGRLQHTCYTVAT-------TSVDTIFPSSRRDYDPTDEPLREED 94
H LR++N + F+ + HT +A +VD++F + + YD + R D
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPD 284
Query: 95 RIWFREELG 103
WF G
Sbjct: 285 NYWFNVTFG 293
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 42 HLLRVVNMAEPMRFRFGRLQHTCYTVAT-------TSVDTIFPSSRRDYDPTDEPLREED 94
H LR++N + F+ + HT +A +VD++F + + YD + R D
Sbjct: 225 HRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPD 284
Query: 95 RIWFREELG 103
WF G
Sbjct: 285 NYWFNVTFG 293
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.3 bits (72), Expect = 0.072, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR QA ER FHIFY L+ GA
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGA 296
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR QA E +FHIFYQLL GA L + + +RF
Sbjct: 244 SRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRF 284
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 11 ATGASMSRVTYQAP-GER---NFHIFYQLLVGADVHLLRVVNMAE 51
A G + RV++Q P ER + + YQLL G ++H L + N A+
Sbjct: 28 ALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQ 72
>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 393
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 72 VDTIFPSSRRDYDPTDEPLRE------EDRIWFR 99
+DTI + R + DP+ PL E E+++WF+
Sbjct: 7 IDTILSTLRMEADPSLHPLFEQFEKFYEEKLWFQ 40
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 24 PGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY 83
P R + Y + + D L + V++ P+R G T+ +D +R Y
Sbjct: 271 PNPRGYQS-YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSY 327
Query: 84 DPTDEPLREE--DRIWFREELGKLN 106
EPL +E D+I + LG+ N
Sbjct: 328 SSRTEPLSDEELDKIAKQLNLGRWN 352
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 24 PGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY 83
P R + Y + + D L + V++ P+R G T+ +D +R Y
Sbjct: 271 PNPRGYQS-YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSY 327
Query: 84 DPTDEPLREE--DRIWFREELGKLN 106
EPL +E D+I + LG+ N
Sbjct: 328 SSRTEPLSDEELDKIAKQLNLGRWN 352
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 24 PGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY 83
P R + Y + + D L + V++ P+R G T+ +D +R Y
Sbjct: 271 PNPRGYQS-YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSY 327
Query: 84 DPTDEPLREE--DRIWFREELGKLN 106
EPL +E D+I + LG+ N
Sbjct: 328 SSRTEPLSDEELDKIAKQLNLGRWN 352
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 24 PGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY 83
P R + Y + + D L + V++ P+R G T+ +D +R Y
Sbjct: 271 PNPRGYQS-YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSY 327
Query: 84 DPTDEPLREE--DRIWFREELGKLN 106
EPL +E D+I + LG+ N
Sbjct: 328 SSRTEPLSDEELDKIAKQLNLGRWN 352
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 24 PGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY 83
P R + Y + + D L + V++ P+R G T+ +D +R Y
Sbjct: 271 PNPRGYQS-YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSY 327
Query: 84 DPTDEPLREE--DRIWFREELGKLN 106
EPL +E D+I + LG+ N
Sbjct: 328 SSRTEPLSDEELDKIAKQLNLGRWN 352
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 33 YQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLRE 92
Y + + D L + V++ P+R G T+ +D +R Y EPL +
Sbjct: 279 YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSD 336
Query: 93 E--DRIWFREELGKLN 106
E D+I + LG+ N
Sbjct: 337 EELDKIAKQLNLGRWN 352
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 33 YQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLRE 92
Y + + D L + V++ P+R G T+ +D +R Y EPL +
Sbjct: 279 YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSD 336
Query: 93 E--DRIWFREELGKLN 106
E D+I + LG+ N
Sbjct: 337 EELDKIAKQLNLGRWN 352
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 33 YQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLRE 92
Y + + D L + V++ P+R G T+ +D +R Y EPL +
Sbjct: 279 YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSD 336
Query: 93 E--DRIWFREELGKLN 106
E D+I + LG+ N
Sbjct: 337 EELDKIAKQLNLGRWN 352
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 33 YQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLRE 92
Y + + D L + V++ P+R G T+ +D +R Y EPL +
Sbjct: 279 YLITLPKDGDLKQAVDIIRPLRL--GMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSD 336
Query: 93 E--DRIWFREELGKLN 106
E D+I + LG+ N
Sbjct: 337 EELDKIAKQLNLGRWN 352
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 40 DVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDY--DPTDEPLREEDRIW 97
D L+++ + F R Q +++ I+ S R++ DPT+ LREE RI
Sbjct: 46 DAFLVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYAESFREWEADPTNPALREEMRIQ 105
Query: 98 FRE 100
F +
Sbjct: 106 FND 108
>pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1IWB|A Chain A, Crystal Structure Of Diol Dehydratase
pdb|1IWB|L Chain L, Crystal Structure Of Diol Dehydratase
pdb|1UC4|A Chain A, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC4|L Chain L, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC5|A Chain A, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|1UC5|L Chain L, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|3AUJ|A Chain A, Structure Of Diol Dehydratase Complexed With Glycerol
pdb|3AUJ|L Chain L, Structure Of Diol Dehydratase Complexed With Glycerol
Length = 554
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 35 LLVGADVH---LLRVVNMAEPMRFRFGRLQHTCY--TVATTSVDTIF 76
LLVG+ V +L ++ E + G L HTCY T++ + +F
Sbjct: 186 LLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVF 232
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 25.0 bits (53), Expect = 9.5, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 42 HLLRVVNMAEPMRFRFGRLQHTCYTVATT-------SVDTIFPSSRRDYDPTDEPLREED 94
H LR++N + F+ + H +AT +V ++F + + YD T +
Sbjct: 266 HRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVG 325
Query: 95 RIWFREELG 103
WF G
Sbjct: 326 NYWFNVTFG 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,065,268
Number of Sequences: 62578
Number of extensions: 103667
Number of successful extensions: 361
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 79
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)