RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18112
(107 letters)
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 63.5 bits (155), Expect = 4e-13
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVAT 69
SRV YQ PGERNFHIFYQLL GA + + + +P + + Q CYTV
Sbjct: 178 SRVVYQTPGERNFHIFYQLLAGASAQEKKELGLKDPKDYAYLS-QSGCYTVPG 229
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 61.9 bits (151), Expect = 1e-12
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTV 67
SRV Q PGERNFHIFYQLL GA + + + P +R+ Q C V
Sbjct: 176 SRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLN-QGGCNDV 225
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 61.4 bits (150), Expect = 2e-12
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVAT 69
SRV QA GERN+HIFYQLL GA L + + + P +R+ Q C TV
Sbjct: 184 SRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLN-QGGCLTVDG 235
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 59.9 bits (146), Expect = 6e-12
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLL 44
SRV +QA GERN+HIFYQLL GAD L
Sbjct: 190 SRVVFQASGERNYHIFYQLLSGADPELK 217
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 59.1 bits (144), Expect = 1e-11
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATT 70
SRV Q GERNFHIFYQLL GA LLR + + +P + + Q CYTV
Sbjct: 178 SRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLN-QSQCYTVDGI 230
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 52.7 bits (127), Expect = 2e-09
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 12 TGASM-------SRVTYQAPGERNFHIFYQLLVGAD 40
GA+M SRV +QAPGERN+HIFYQL GA
Sbjct: 169 IGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAP 204
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 51.6 bits (124), Expect = 6e-09
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGAD 40
SRV +Q ERN+HIFYQLL G
Sbjct: 245 SRVVHQNKNERNYHIFYQLLAGDP 268
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 45.9 bits (109), Expect = 6e-07
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SR+ Q+ ERN+HIFY+L GA + ++++ P FR+ T Y A D
Sbjct: 180 SRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRY-FANKETDKQI 238
Query: 77 PSSRR 81
+R+
Sbjct: 239 LQNRK 243
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 45.6 bits (108), Expect = 7e-07
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVA 68
SRV A GER++HIFYQL GA L +N+ +++ + Q CY++
Sbjct: 180 SRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLK-QSCCYSIN 230
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 42.6 bits (100), Expect = 7e-06
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 17 SRVTYQAPGERNFHIFYQLLVG 38
SR+ +QA ERN+HIFY+LL G
Sbjct: 176 SRIVFQAKNERNYHIFYELLAG 197
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 42.3 bits (100), Expect = 1e-05
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHL 43
SRV Q ER++HIFYQLL GA+ +
Sbjct: 274 SRVVTQEDDERSYHIFYQLLKGANDEM 300
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 42.4 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SRV + ERN+H FYQL ++ + +P F + Q C+ + +
Sbjct: 181 SRVCQISDPERNYHCFYQLCAAPP-EDVKKYKLGDPKEFHYLN-QSNCFELDGVDDAEEY 238
Query: 77 PSSRRDYDPTDEPLREEDRIWFR 99
++RR D E+D I FR
Sbjct: 239 LATRRAMDVVGISEEEQDAI-FR 260
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 39.7 bits (93), Expect = 9e-05
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGA 39
SR+ QA ERN+HIFY +L G
Sbjct: 175 SRIVRQARDERNYHIFYCMLAGL 197
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 38.7 bits (90), Expect = 2e-04
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGAD------VHLLR-----VVNMAEP-------MRFRFG 58
SR+ Q ERN+H+FY LL+GA LL+ +N + F
Sbjct: 186 SRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245
Query: 59 RLQHTCYTV 67
RL+ V
Sbjct: 246 RLKQAMEMV 254
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 37.5 bits (87), Expect = 5e-04
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 17 SRVTYQAPGERNFHIFYQLLVG 38
SRV +QA GE+NFHIFY + G
Sbjct: 176 SRVVHQAEGEKNFHIFYYIYAG 197
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 35.6 bits (82), Expect = 0.002
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHL---LRVVNMAEPMRFRFGRL 60
SRV + GE NF +F QLL G D L L + MAE F G L
Sbjct: 177 SRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGL 223
>gnl|CDD|215002 smart01059, CAT, Chloramphenicol acetyltransferase.
Chloramphenicol acetyltransferase (CAT).catalyzes the
acetyl-CoA dependent acetylation of chloramphenicol
(Cm), an antibiotic which inhibits prokaryotic
peptidyltransferase activity. Acetylation of Cm by CAT
inactivates the antibiotic. A histidine residue, located
in the C-terminal section of the enzyme, plays a central
role in its catalytic mechanism. There is a second
family of CAT. evolutionary unrelated to the main family
described above. These CAT belong to the bacterial
hexapeptide-repeat containing-transferases family (see
). The crystal structure of the type III enzyme from
Escherichia coli with chloramphenicol bound has been
determined. CAT is a trimer of identical subunits
(monomer Mr 25,000) and the trimeric structure is
stabilised by a number of hydrogen bonds, some of which
result in the extension of a beta-sheet across the
subunit interface. Chloramphenicol binds in a deep
pocket located at the boundary between adjacent subunits
of the trimer, such that the majority of residues
forming the binding pocket belong to one subunit while
the catalytically essential histidine belongs to the
adjacent subunit. His195 is appropriately positioned to
act as a general base catalyst in the reaction, and the
required tautomeric stabilisation is provided by an
unusual interaction with a main-chain carbonyl oxygen.
Length = 202
Score = 27.6 bits (62), Expect = 1.2
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 32 FYQLLVGADVHLLRVVNMAEPMRFRF--GRL-----QHTCYTVATTSVDTIFPSSRRDYD 84
F+ + A +L+ VN R R G+L H YT+ D F YD
Sbjct: 46 FFPAYLYA---VLKAVNEIPEFRMRIDDGKLVEWDSVHPSYTIFHKE-DETFSFIWTPYD 101
Query: 85 PT 86
Sbjct: 102 ED 103
>gnl|CDD|185145 PRK15223, PRK15223, pilin outer membrane usher protein SafC;
Provisional.
Length = 836
Score = 26.9 bits (59), Expect = 2.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 7 EMRIATGASMSRVTYQAPGERNFHIFYQL 35
E+ + GA RV YQ P + YQ+
Sbjct: 803 ELTVKWGAQQCRVNYQLPAHKGIAGLYQM 831
>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane
protein [Intracellular trafficking and secretion].
Length = 227
Score = 26.7 bits (59), Expect = 2.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 70 TSVDTIFPSSRRDYDPTDEPLREEDRIWFR 99
+T+ +S R P D PL EE I F
Sbjct: 41 LLDETLLATSTRGVYPGDPPLLEELGINFG 70
>gnl|CDD|184977 PRK15016, PRK15016, isochorismate synthase EntC; Provisional.
Length = 391
Score = 26.0 bits (57), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 7 EMRIATGASMSRVTYQAPGERNFHIFYQ---LLVGADVHLL 44
+ I +GA + R+ Q P NFH+ +L+GA LL
Sbjct: 159 DAAIDSGALLERLIAQNPVSYNFHVPLADGGVLLGASPELL 199
>gnl|CDD|235434 PRK05370, PRK05370, argininosuccinate synthase; Validated.
Length = 447
Score = 26.1 bits (58), Expect = 4.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 6 IEMRIATGASMSRVTYQAPGERNFHIFYQLLVGA 39
IE RI + SR Y+APG HI Y+ LV
Sbjct: 279 IENRIIE--AKSRGIYEAPGMALLHIAYERLVTG 310
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 25.6 bits (56), Expect = 6.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 59 RLQHTCYTVATTSVDTIFPSSRRD----------YDPTDEPLREEDRIWFREELGKL 105
+++HTC V +V +FP ++ YD EPL ++D ++E+ ++
Sbjct: 45 KIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRI 101
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 25.3 bits (56), Expect = 8.5
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 5 DIEMRIATGA-SMSRVTYQAPGERN 28
D ++ I GA SMSR Y P R
Sbjct: 108 DADVAIGGGAESMSRAPYLLPAARW 132
>gnl|CDD|153087 cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase
catalyzes a key step in anaerobic glycolysis, the
conversion of pyruvate and CoenzymeA to formate and
acetylCoA. The PFL mechanism involves an unusual radical
cleavage of pyruvate in which two cysteines and one
glycine form radicals that are required for catalysis.
PFL has a ten-stranded alpha/beta barrel domain that is
structurally similar to those of all three
ribonucleotide reductase (RNR) classes as well as
benzylsuccinate synthase and B12-independent glycerol
dehydratase.
Length = 738
Score = 25.0 bits (55), Expect = 10.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 67 VATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREEL 102
VA VD + ++D D +D I REE+
Sbjct: 175 VALYGVDRLIEEKKKDLDNLGGDEMTDDTIRLREEV 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.413
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,568,339
Number of extensions: 464193
Number of successful extensions: 479
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 31
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)