RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18112
(107 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 64.2 bits (157), Expect = 1e-13
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
SRV +QA ERN+HIFYQL A + + + + F + + Q + +D
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK-QGGSPVID--GID 300
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 63.8 bits (156), Expect = 1e-13
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + V
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIK--GVS 319
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 64.0 bits (156), Expect = 2e-13
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
SRV +QA ERN+HIFYQL A + + + + F + + Q + +D
Sbjct: 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK-QGGSPVID--GID 300
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 63.5 bits (155), Expect = 2e-13
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + V
Sbjct: 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIK--GVS 319
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 63.1 bits (154), Expect = 3e-13
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVD 73
SRVTYQ ERN+HIFYQ+ A L V+ + + + C TV ++D
Sbjct: 270 SRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGL-YSFINQGCLTVD--NID 323
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 63.1 bits (154), Expect = 3e-13
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR QA E +FHIFYQLL GA L + + +RF
Sbjct: 244 SRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRF 284
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 62.3 bits (152), Expect = 5e-13
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRF 57
SR+ Q ERN+HIFY+L GA + ++++ P FR+
Sbjct: 229 SRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRY 269
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 62.2 bits (152), Expect = 7e-13
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVN-MAEPMRFRFGRLQHTCYTVATTS 71
SRV + GER+FHIFYQ+L G L + + + + + C+ V+T
Sbjct: 187 SRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLK-KSGCFDVSTID 241
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 61.1 bits (149), Expect = 2e-12
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLR 45
SRV +Q ER++HIFYQ+L LL
Sbjct: 271 SRVIFQLKAERDYHIFYQILSNKKPELLD 299
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 56.0 bits (135), Expect = 1e-10
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVA 68
SR QA ER FHIFY L+ GA + + + + F L + +
Sbjct: 274 SRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTF--LSNGHVPIP 323
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.20
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 33/99 (33%)
Query: 26 ERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQH--TCYTVATTSVDTIFPSSRRDY 83
E + L G D+H L + + + + Y A P +
Sbjct: 92 ENCY------LEGNDIHAL-AAKLLQENDTTLVKTKELIKNYITARIMAKR--PFDK--- 139
Query: 84 DPTDEPL-----REEDRI------------WFREELGKL 105
++ L ++ +F EEL L
Sbjct: 140 -KSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EELRDL 176
Score = 27.7 bits (61), Expect = 0.91
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 24/103 (23%)
Query: 5 DIEMRIATGASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTC 64
D + G S+ + P H F G +R A M F
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIH-F----GGEKGKRIRENYSA--MIFE-------- 1694
Query: 65 YTVATTSVDTIFPSSRRDYDPTDEPLREEDRIWFREELGKLNR 107
T VD + + + +E FR E G L+
Sbjct: 1695 -----TIVDG-KLKTEKIFKEINEHSTS---YTFRSEKGLLSA 1728
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 3.1
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 34 QLLVGADV-HLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDEPLRE 92
+L ++ H++ + F L + V+ + R +Y P++
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKT 100
Query: 93 EDR 95
E R
Sbjct: 101 EQR 103
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase;
HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A*
2cis_A*
Length = 297
Score = 25.1 bits (54), Expect = 6.3
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 28 NFHIFYQLLVGAD--VHLLRVVNMAEPMRFRFGRLQHT---CYTVATTSVDTIFPSSRRD 82
++ + + +G+D + V N + +F L HT + T V + D
Sbjct: 123 DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYD 182
Query: 83 YDPTDEPLREEDRIWFREEL 102
+ + + + F +E
Sbjct: 183 QLLKESYVDKHPVVTFNQET 202
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 24.4 bits (54), Expect = 8.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 67 VATTSVDTIFPSS 79
VAT + D +FP +
Sbjct: 77 VATNTPDALFPDT 89
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 24.4 bits (54), Expect = 8.7
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 67 VATTSVDTIFPSS 79
V T S D PS
Sbjct: 101 VNTLSPDHHDPSQ 113
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus
faecalis} PDB: 3il5_A* 3il4_A*
Length = 321
Score = 24.4 bits (54), Expect = 9.1
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 67 VATTSVDTIFPSS 79
VAT + D PS
Sbjct: 79 VATVTPDFNMPSV 91
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme;
1.81A {Pseudomonas aeruginosa}
Length = 331
Score = 24.4 bits (54), Expect = 9.7
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 67 VATTSVDTIFPSS 79
+AT++ D P++
Sbjct: 78 LATSTGDFCCPAT 90
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH,
transferase; HET: MLC; 1.46A {Escherichia coli} SCOP:
c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A
1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 24.4 bits (54), Expect = 9.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 67 VATTSVDTIFPSS 79
VATTS FPS+
Sbjct: 78 VATTSATHAFPSA 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.413
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,714,099
Number of extensions: 90991
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 34
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)