RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18112
(107 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 45.5 bits (107), Expect = 2e-07
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIF 76
SR QA ER FHIFY L+ GA + + + + F L + + D +F
Sbjct: 196 SRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTF--LSNGHVPIPAQQDDEMF 253
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 43.9 bits (103), Expect = 5e-07
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTS 71
SRVTYQ ERN+HIFYQ+ A L V+ + P + + C TV
Sbjct: 222 SRVTYQQSAERNYHIFYQICSNAIPELNDVMLV-TPDSGLYSFINQGCLTVDNID 275
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 42.8 bits (100), Expect = 2e-06
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 14 ASMSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTS 71
SRV +QA ERN+HIFYQL A + + + + F + + Q +
Sbjct: 182 LEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK-QGGSPVIDGID 238
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 40.4 bits (94), Expect = 9e-06
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTS 71
SRV +Q+ ERN+HIFYQLL GA + +++A P F + Q C + S
Sbjct: 219 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN-QSGCVDIKGVS 272
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 38.9 bits (90), Expect = 3e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 16 MSRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTS 71
SRVT+Q P ER++HIFYQ++ L+ + + + + + TV +
Sbjct: 223 KSRVTFQLPAERSYHIFYQIMSNKKPELID-MLLITTNPYDYHYVSEGEITVPSID 277
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 32.4 bits (73), Expect = 0.007
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 17 SRVTYQAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTS 71
SRV + GER+FHIFYQ+L G L + + + C+ V+T
Sbjct: 179 SRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTID 233
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3
and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 25.0 bits (54), Expect = 1.6
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 29 FHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTCYTVATTSVDTIFPSSRRDYDPTDE 88
F +FY+ A +L P+ + +T + P++ Y + +
Sbjct: 33 FGLFYKPSPDAGSAVLLREEECSPV---LREGLGSLHTRHHCQIPVPDPATHGQYIVSVQ 89
Query: 89 PLREEDRI 96
P R E I
Sbjct: 90 PRRAEKHI 97
>d2o5ha1 d.363.1.1 (A:1-131) Hypothetical protein NMB0513 {Neisseria
meningitidis [TaxId: 487]}
Length = 131
Score = 23.3 bits (50), Expect = 5.7
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 76 FPSSRRDYDPTDEPLREEDRIWFREE 101
+P + +P + +W E
Sbjct: 89 WPEYEIEPNPLPGYAPFDIGMWLTVE 114
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 23.5 bits (50), Expect = 8.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 59 RLQHTCYTVATTSVDTIFPSSRRDYDPTDE 88
+LQ ++ F S Y+P E
Sbjct: 63 KLQSILFSNYMEEYKVDFKRSTAIYNPMSE 92
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 22.8 bits (48), Expect = 9.4
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 7 EMRIATGASMSRVTY--QAPGERNFHIFYQLLVGADVHLLRVVNMAEPMRFRFGRLQHTC 64
E+++ A + +T+ PG + G V L ++N E
Sbjct: 41 EVQLDEDAYLQAMTFDGSIPGP-----LMIVHEGDYVEL-TLINPPENTMPHNIDFHAAT 94
Query: 65 YTVATTSVDTIFPSSRRDYDPTDEP 89
+ + I P +
Sbjct: 95 GALGGGGLTLINPGEKVVLRFKATR 119
>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 181
Score = 23.1 bits (49), Expect = 9.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 40 DVHLLRVVNMAEPMRFRFGRLQHTCYTVAT-------TSVDTIFPSSRRDYDPTDEPLRE 92
H LR++N + F+ + HT +A +VD++F + + YD + R
Sbjct: 61 KRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRA 120
Query: 93 EDRIWFREELG 103
D WF G
Sbjct: 121 PDNYWFNVTFG 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.413
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,016
Number of extensions: 16533
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 14
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)