BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18113
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HD2|A Chain A, Crystal Structure Of E. Coli Hppk(Q50a) In Complex With
Mgam Pterin
Length = 158
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3HSJ|A Chain A, Crystal Structure Of E. Coli Hppk(N55a)
Length = 158
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3HSD|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSD|B Chain B, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSG|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a) In Complex With
Mgampcpp
Length = 158
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3HCX|A Chain A, Crystal Structure Of E. Coli Hppk(N10a)
pdb|3HD1|A Chain A, Crystal Structure Of E. Coli Hppk(N10a) In Complex With
Mgam
Length = 158
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|1DY3|A Chain A, Ternary Complex Of 7,8-Dihydro-6-
Hydroxymethylpterinpyrophosphokinase From Escherichia
Coli With Atp And A Substrate Analogue.
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
pdb|1Q0N|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1RAO|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Hppk
With Amp And 6-Hydroxymethylpterin-Diphosphate At 1.56
Angstrom Resolution
pdb|1RB0|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli Hppk With
6-Hydroxymethylpterin-Diphosphate At 1.35 Angstrom
Resolution
pdb|2F63|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analogs Ampcpp And Hp-1
pdb|2F65|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analog Ampcpp
pdb|1HKA|A Chain A, 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|3IP0|A Chain A, Crystal Structure Of E. Coli Hppk In Complx With Mgampcpp
And 6-Hydroxymethylpterin6-Carboxypterin
pdb|3UD5|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1a
pdb|3UDE|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1b
pdb|3UDV|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1c
pdb|4F7V|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1d (Hp26)
Length = 158
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|1TMJ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45
Angstrom Resolution
pdb|1TMM|A Chain A, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
pdb|1TMM|B Chain B, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3KUE|A Chain A, Crystal Structure Of E. Coli Hppk(E77a)
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3ILL|A Chain A, Crystal Structure Of E. Coli Hppk(D97a)
pdb|3ILO|A Chain A, Crystal Structure Of E. Coli Hppk(D97a) In Complex With
Mgampcpp And 6-Hydroxymethyl-7,8-Dihydropterin
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|3ILI|A Chain A, Crystal Structure Of E. Coli Hppk(D95a)
pdb|3ILJ|A Chain A, Crystal Structure Of E. Coli Hppk(D95a) In Complex With
Mgampcpp
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|1HQ2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(R82a) With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1IM6|A Chain A, Crystal Structure Of Unligated Hppk(R82a) From E.Coli At
1.74 Angstrom Resolution
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|1F9H|A Chain A, Crystal Structure Of The Ternary Complex Of E. Coli
Hppk(R92a) With Mgampcpp And 6-Hydroxymethyl-7,8-
Dihydropterin At 1.50 Angstrom Resolution
pdb|1G4C|A Chain A, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1G4C|B Chain B, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1KBR|A Chain A, Crystal Structure Of Unligated Hppk(R92a) From E.Coli At
1.55 Angstrom Resolution
Length = 158
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 115 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 157
>pdb|1RTZ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(V83gDEL84-89) At 1.33
Angstrom Resolution
pdb|1RU1|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU1|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(V83gDEL84-89) With Mgampcpp And 6-
Hydroxymethylpterin At 1.48 Angstrom Resolution
(Orthorhombic Form)
Length = 152
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 454 HFDKKVTDMGFEFW-LFEPSGGLLFPTVDYLREVVLSKIYEDNNK 497
H+D K + GF W LFE + L+FP + LR+++ ++ ++ NK
Sbjct: 109 HYDMK--NRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,622,554
Number of Sequences: 62578
Number of extensions: 521788
Number of successful extensions: 1292
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 17
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)