Query psy18113
Match_columns 542
No_of_seqs 204 out of 1540
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:52:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.2E-29 7.4E-34 264.8 35.4 334 24-412 11-361 (429)
2 3llo_A Prestin; STAS domain, c 98.9 2E-09 6.7E-14 95.8 7.4 69 464-542 29-97 (143)
3 3ny7_A YCHM protein, sulfate t 98.9 2.5E-09 8.5E-14 92.0 6.2 64 463-542 15-78 (118)
4 3oiz_A Antisigma-factor antago 98.8 2.3E-09 7.8E-14 89.3 4.9 63 464-542 15-77 (99)
5 4dgh_A Sulfate permease family 98.8 7.1E-09 2.4E-13 90.7 7.5 64 464-542 19-82 (130)
6 2kln_A Probable sulphate-trans 98.8 5.8E-09 2E-13 91.2 5.8 68 464-542 14-81 (130)
7 4dgf_A Sulfate transporter sul 98.7 1.2E-08 4.1E-13 89.9 5.1 64 464-542 22-85 (135)
8 1sbo_A Putative anti-sigma fac 98.4 4.7E-07 1.6E-11 76.0 7.8 66 464-542 12-77 (110)
9 2ka5_A Putative anti-sigma fac 98.4 4.8E-07 1.7E-11 78.4 7.5 65 464-542 20-85 (125)
10 1th8_B Anti-sigma F factor ant 98.3 5.1E-07 1.8E-11 76.6 5.0 66 464-542 11-76 (116)
11 3t6o_A Sulfate transporter/ant 98.3 1.3E-06 4.4E-11 75.1 7.0 66 464-542 13-82 (121)
12 1h4x_A SPOIIAA, anti-sigma F f 98.2 8.2E-07 2.8E-11 75.6 4.3 66 464-542 10-75 (117)
13 4hyl_A Stage II sporulation pr 98.2 1.4E-06 4.7E-11 74.3 5.2 64 464-542 12-75 (117)
14 3zxn_A RSBS, anti-sigma-factor 97.8 4.1E-05 1.4E-09 65.9 7.7 65 465-542 12-76 (123)
15 3agd_A Salt-tolerant glutamina 94.5 0.033 1.1E-06 57.0 5.0 77 465-542 325-437 (456)
16 3qe7_A Uracil permease; uracil 87.8 7 0.00024 40.4 14.0 113 33-153 230-353 (429)
17 1bts_A BAND 3 anion transport 33.0 28 0.00097 20.6 2.2 19 59-77 6-24 (26)
18 3rst_A Signal peptide peptidas 20.6 2.7E+02 0.0092 25.6 7.8 62 464-539 3-76 (240)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=2.2e-29 Score=264.77 Aligned_cols=334 Identities=12% Similarity=0.119 Sum_probs=253.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHhHHHHHHHhhhcCCCcc-ccchhHHH-HHHHHHhhhcCCHH
Q psy18113 24 VNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQL-SVGPTSIM-ALLCLTYTHDTSLE 101 (542)
Q Consensus 24 ~~~l~~Di~aGi~~~~~~iP~~~aya~lag~pp~~gl~~~~~~~ii~~lfgss~~~-~~Gp~~~~-~~~~~~~~~~~~~~ 101 (542)
+..+++++.+|+...+....-.++--.+-|+||..+++++.+++++.++++++|.- ..|++... +.+. .+.. ++++
T Consensus 11 ~~~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~-~i~~-~g~~ 88 (429)
T 3qe7_A 11 RPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVL-LLLP-LGYE 88 (429)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHH-HHGG-GCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHH-HHHh-cCHH
Confidence 33588999999999984433333333334999999999999999999998666543 36876443 3332 2333 8899
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhc--hhhhhcchhHHHHHHHHHHHHHHHHhhhhhhCcccCCCcHHHHHHHHHhccCCC
Q psy18113 102 MVAFLTFLTGLVQLTCGLL--SLG--FVVEFVSLPVVSGFTSSTAIIMASSQLKYFLGIQFKPKNFLDMYVQLFKNIGKT 177 (542)
Q Consensus 102 ~~~~~~~l~Gii~~llg~~--rlg--~l~~~ip~~V~~Gf~~gigl~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~l~~~ 177 (542)
.+....+++|++++++|++ |+| ++.|++|+.|++.+++.+|+.+...+++..-|....+ +..
T Consensus 89 ~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~--------------~~~ 154 (429)
T 3qe7_A 89 VALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEG--------------QTP 154 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTT--------------BCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCC--------------ccc
Confidence 9999999999999999998 776 8999999999999999999999999988754322111 234
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcccCCCCCCchhhhhhhhhHHHhhcccchhHHHHHHHHHHHHhcCCCccCeeEeccc
Q psy18113 178 KYSDLSLGVACVVLLLFMKRLQDIKLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIITYVLKNTHEKVPFALVGNI 257 (542)
Q Consensus 178 ~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi~~~~i~~~~~~~~~~~~~~~~g~i 257 (542)
++..+.+++.++++++++.++.|+.. +... .++.+++++++++.++..+. +.+++.
T Consensus 155 ~~~~~~la~~tl~iii~~~~~~kg~~-------------~~~a-------iLigivvg~~~a~~~G~~d~----~~v~~a 210 (429)
T 3qe7_A 155 DSKTIIISITTLAVTVLGSVLFRGFL-------------AIIP-------ILIGVLVGYALSFAMGIVDT----TPIINA 210 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSTTT-------------TTHH-------HHHHHHHHHHHHHHHHHTTS----SHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccc-------------hhhH-------HHHHHHHHHHHHHHhcCCCc----cccccc
Confidence 56778889999998888877554321 1111 35678888888888775332 222332
Q ss_pred C-CCCCCCCCCCCccccCCCcCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc--CC----CccCCChhHHHHhhhhhH
Q psy18113 258 E-SGFPSLAFPPTHININGTDLGLLDMVSHLNTGIFLVPLVGLVANVAIAKAFS--EG----KIVDASQEMIALGMGNLA 330 (542)
Q Consensus 258 p-~~~p~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~ia~v~~~es~~~~~~~a--~~----~~~d~n~EL~a~G~aNiv 330 (542)
| -++|++..|+| +|..+.. ++.++++.++|+++..++.+ .+ ++.|.|||+.++|++|++
T Consensus 211 ~~~~lP~~~~P~f---------~~~~i~~-----i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~ 276 (429)
T 3qe7_A 211 HWFALPTLYTPRF---------EWFAILT-----ILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI 276 (429)
T ss_dssp CSSCCCCCCCCCC---------CHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcc---------cHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH
Confidence 2 24666667766 5654432 35688899999998877766 22 356789999999999999
Q ss_pred hhhhCCCCCccchhhhHHhhhcCcCchhHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHHhhhccHHHHHHh--
Q psy18113 331 GSFINAMPVASSFSRSAVNNASGVQTTLGGLYTSIIVLLSLSL--LTPYLQYIPQASLAAVLVCAVLTLVEIEIMAVL-- 406 (542)
Q Consensus 331 s~~fG~~p~~~s~srS~~~~~~GarT~la~i~~a~~~ll~ll~--~~~ll~~iP~~vLa~ili~~~~~li~~~~~~~l-- 406 (542)
+|+||++|.|++..+++++..+|++||++..++|++++++.++ ++++++.+|.++++|+. .+.++++....++.+
T Consensus 277 ~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~-l~lfg~i~~~Gi~~l~~ 355 (429)
T 3qe7_A 277 SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVS-LLLYGVIGASGIRVLIE 355 (429)
T ss_dssp HHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999888888899999999999999999988877643 67899999999999965 559999999998888
Q ss_pred hccCcc
Q psy18113 407 WKTNKR 412 (542)
Q Consensus 407 ~~~~~~ 412 (542)
.|.+..
T Consensus 356 ~~v~~~ 361 (429)
T 3qe7_A 356 SKVDYN 361 (429)
T ss_dssp TTSCTT
T ss_pred cCCCCC
Confidence 777754
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=98.90 E-value=2e-09 Score=95.84 Aligned_cols=69 Identities=9% Similarity=0.152 Sum_probs=53.6
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.++|++|+|+|+|+++|++++.+.+.+. .++ ..+.+||||++|+++|+||+.+|.++.++++++|+
T Consensus 29 ~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~--------~~~--~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 97 (143)
T 3llo_A 29 PGIKIFQINAPIYYANSDLYSSALKRKTGVN--------GSE--NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGI 97 (143)
T ss_dssp TTEEEEEECSCHHHHHHHHHHHC---------------------CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEeCCCeEechHHHHHHHHHHHHccC--------CCC--CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCC
Confidence 5799999999999999999999998733110 011 13369999999999999999999999999999874
No 3
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=98.86 E-value=2.5e-09 Score=92.04 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=56.0
Q ss_pred CceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 463 GFEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 463 ~~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
.+++.++|++|+|||+|++++++++.+ .. ++ ++ .+|+||++|+++|+||+.+|.++.+++++ |+
T Consensus 15 ~~~v~v~~l~G~L~f~~a~~l~~~l~~----------~~-~~---~~-~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~ 78 (118)
T 3ny7_A 15 PDDVLVLRVIGPLFFAAAEGLFTDLES----------RL-EG---KR-IVILKWDAVPVLDAGGLDAFQRFVKRLPE-GC 78 (118)
T ss_dssp CTTEEEEEEESCBCHHHHHHHHHHHHT----------TC-TT---CS-EEEEEEEECCCBCHHHHHHHHHHHHHCCT-TC
T ss_pred CCCEEEEEEeceeEehhHHHHHHHHHH----------hc-CC---Cc-EEEEEcCCCCeecHHHHHHHHHHHHHHHC-CC
Confidence 468999999999999999999999987 21 11 24 69999999999999999999999999998 74
No 4
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=98.83 E-value=2.3e-09 Score=89.25 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=54.8
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.++|++|+|||+|+++|++++.. . + + ++ .+|+|+++++++|+||+.+|.++.++++++|.
T Consensus 15 g~~~v~~l~G~L~f~~a~~~~~~l~~----------~--~-~--~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 77 (99)
T 3oiz_A 15 GRERIYRVEGQLFYASVEDFMAAFDF----------R--E-A--LD-RVVIDVSRAHIWDISSVQALDMAVLKFRREGA 77 (99)
T ss_dssp SSEEEEEEEEEECGGGHHHHHHTCCT----------T--S-C--CS-EEEEEEEEEEECSHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEeeEEehhhHHHHHHHHhh----------c--C-C--CC-EEEEECCCCCccCHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999998754 1 1 1 34 59999999999999999999999999999874
No 5
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=98.81 E-value=7.1e-09 Score=90.69 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=56.1
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.++|++|+|+|+|+++|++.+++ . +++ ++ .||+||++|+++|+||+.+|.++.++++++|+
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~----------~--~~~--~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 82 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGS----------I--QET--PQ-ILILRLKWVPFMDITGIQTLEEMIQSFHKRGI 82 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHH----------S--SSC--CS-EEEEECTTCCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHH----------h--ccC--CC-EEEEECCCCCcccHHHHHHHHHHHHHHHHCCC
Confidence 57999999999999999999999875 2 121 24 69999999999999999999999999999874
No 6
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=98.77 E-value=5.8e-09 Score=91.24 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=57.4
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|+|+|+|+++|++.+.+.+ .++++ ..+.||+||++|+++|+||+.+|.++.+++++.|+
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~----------~~~~~-~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 81 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVV----------DQDPG-QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGI 81 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHT----------TSSSS-CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHH----------hcCCC-CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCC
Confidence 5799999999999999999999998832 11110 13479999999999999999999999999998873
No 7
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=98.69 E-value=1.2e-08 Score=89.87 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=55.7
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.++|++|+|||+|+++|++++.+ . .+ ..+.+|+||++|+++|+||+.+|.++.++++++|+
T Consensus 22 ~~i~v~~l~G~L~f~~a~~~~~~l~~----------~--~~---~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 85 (135)
T 4dgf_A 22 LGVEIYEINGPFFFGVADRLKGVLDV----------I--EE---TPKVFILRMRRVPVIDATGMHALWEFQESCEKRGT 85 (135)
T ss_dssp TTEEEEECCSSBSHHHHHHHTTGGGG----------C--SS---CCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEeeceEEehhHHHHHHHHHH----------h--cC---CCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCC
Confidence 37999999999999999999998865 2 11 13369999999999999999999999999999874
No 8
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=98.43 E-value=4.7e-07 Score=76.03 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=56.0
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|+++|.|++.+++.+.+.. .+. +.+.+++|+++|+++|++|+..|.++.++++++|.
T Consensus 12 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~----------~~~---~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 77 (110)
T 1sbo_A 12 DDKAIVRVQGDIDAYNSSELKEQLRNFI----------STT---SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGK 77 (110)
T ss_dssp SSEEEEEEESCBSTTTTTHHHHHHHTHH----------HHC---SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEeeEEccccHHHHHHHHHHHH----------hcC---CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999998722 122 11369999999999999999999999999998874
No 9
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=98.41 E-value=4.8e-07 Score=78.36 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=56.1
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHh-hhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLS-KIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|+|+|+|++.+++.+.+ .+ ++. ++ .+|+|++.|+++|+||+..|.++.++++++|+
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~-----------~~~--~~-~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~ 85 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFL-----------NKG--YN-KIFLVLSDVESIDSFSLGVIVNILKSISSSGG 85 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTT-----------TTT--CC-EEEEECTTCSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHh-----------hCC--CC-EEEEECCCCCEEcHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999986 33 111 23 69999999999999999999999999998874
No 10
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=98.30 E-value=5.1e-07 Score=76.64 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=56.0
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|+++|.|++++++.+.+.+ .+.+ .+.+++|+++|+++|++|+..|.++.++++++|.
T Consensus 11 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~----------~~~~---~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 76 (116)
T 1th8_B 11 QDVLIVRLSGELDHHTAEELREQVTDVL----------ENRA---IRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGG 76 (116)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHHH----------HSSC---CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEeeeeccccHHHHHHHHHHHH----------hcCC---CcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCC
Confidence 4688999999999999999999998722 1111 2369999999999999999999999999998874
No 11
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=98.27 E-value=1.3e-06 Score=75.10 Aligned_cols=66 Identities=5% Similarity=-0.003 Sum_probs=55.7
Q ss_pred ceEEEEEeCCcc---ccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhh-
Q psy18113 464 FEFWLFEPSGGL---LFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNN- 539 (542)
Q Consensus 464 ~~i~i~r~~g~L---fF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~- 539 (542)
+++.+++++|.+ +|.|++++++++.+.+ .+++ .+.+|+|++.|+++|+||+..|.++.+++++
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l----------~~~~---~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAM----------QGAQ---PRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTT----------CCSS---SCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHH----------hhcC---CCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 478999999998 8999999999997722 1121 3369999999999999999999999999998
Q ss_pred cCC
Q psy18113 540 FYV 542 (542)
Q Consensus 540 ~~~ 542 (542)
+|.
T Consensus 80 ~g~ 82 (121)
T 3t6o_A 80 QQG 82 (121)
T ss_dssp TTC
T ss_pred cCC
Confidence 763
No 12
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=98.21 E-value=8.2e-07 Score=75.64 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=55.8
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|.++|.|++++++.+.+.+ .+++ ++ .+++|+++|+++|++|+..|.++.++++++|.
T Consensus 10 ~~~~vl~l~G~l~~~~~~~l~~~l~~~~----------~~~~--~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 75 (117)
T 1h4x_A 10 RETVVIRLFGELDHHAVEQIRAKISTAI----------FQGA--VT-TIIWNFERLSFMDSSGVGLVLGRMRELEAVAG 75 (117)
T ss_dssp TTEEEEEEEEEECHHHHHHHHHHHHHHH----------HHTS--CS-EEEEEEEEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEEEeEEchhhHHHHHHHHHHHH----------hcCC--CC-EEEEECCCCcEechHHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999998722 1111 24 59999999999999999999999999998773
No 13
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=98.19 E-value=1.4e-06 Score=74.31 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=55.6
Q ss_pred ceEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 464 FEFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
+++.+++++|.++|.|++.+++.+.+ .. ++ .. .+|+|+++|+++|++|+..|.++.++++++|.
T Consensus 12 ~~~~v~~l~G~ld~~~~~~l~~~l~~----------~~-~~---~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~ 75 (117)
T 4hyl_A 12 QGIDIITLHGHLDTRSSPAVQAAVLP----------RV-TA---KG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQG 75 (117)
T ss_dssp TTEEEEEEEEEECSSSHHHHHHHHGG----------GC-CT---TC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEeEEcchhHHHHHHHHHH----------HH-cc---CC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999987 21 22 23 69999999999999999999999999998763
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=97.82 E-value=4.1e-05 Score=65.90 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=54.8
Q ss_pred eEEEEEeCCccccccHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 465 EFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 465 ~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
++.+++++|.+...+++++++++.+.+. +++ .+++|+|+++|+++|++++..|.++.+.++..|.
T Consensus 12 ~vlvv~l~G~lD~~~a~~l~~~ll~~i~----------~~~---~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~ 76 (123)
T 3zxn_A 12 DYWVVAIEETLHDQSVIQFKEELLHNIT----------GVA---GKGLVIDISALEVVDEFVTRVLIEISRLAELLGL 76 (123)
T ss_dssp TEEEEECCCCC-CHHHHHHHHHHHHHHT----------SSC---CSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeEeeCHHHHHHHHHHHHHHHH----------hcC---CCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCC
Confidence 4889999999999999999999988432 221 3469999999999999999999999999988763
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=94.46 E-value=0.033 Score=57.03 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=56.7
Q ss_pred eEEEEEeCCccccccHHHHHHHHHhhhhhccch-----------------h--------------h-----hhhhcCCCC
Q psy18113 465 EFWLFEPSGGLLFPTVDYLREVVLSKIYEDNNK-----------------N--------------K-----MLHRTRAAG 508 (542)
Q Consensus 465 ~i~i~r~~g~LfF~na~~l~~~l~~~~~~~~~~-----------------~--------------~-----~~~~~~~~~ 508 (542)
++.++++||.+.|+.+|++.+++.+.....++. + + ...+.+. .
T Consensus 325 ~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 403 (456)
T 3agd_A 325 DRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDG-P 403 (456)
T ss_dssp TEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCC-C
T ss_pred cEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCC-C
Confidence 688999999999999999999998851111100 0 0 0011112 3
Q ss_pred CeEEEEEccCCCcccHHHHHHHHHHHHHHhhcCC
Q psy18113 509 DVYIIINCSHIDKTDYTAAKVKTFLFRDCNNFYV 542 (542)
Q Consensus 509 ~~~vIlD~~~v~~iD~ta~~~l~~l~~~~~~~~~ 542 (542)
.+.||+|+++|+.+|-.|...+.+..++++..|+
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~ 437 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGV 437 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCC
Confidence 4479999999999999999999999999988764
No 16
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=87.77 E-value=7 Score=40.38 Aligned_cols=113 Identities=13% Similarity=0.223 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHhCCCc------chhhHHhHHHHHHHhhhcCCCccccchhHHHHHHHHHhhhcCCHHH
Q psy18113 33 AGITVGLTLIPQAIA----YASLAGLNP------KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSLEM 102 (542)
Q Consensus 33 aGi~~~~~~iP~~~a----ya~lag~pp------~~gl~~~~~~~ii~~lfgss~~~~~Gp~~~~~~~~~~~~~~~~~~~ 102 (542)
.=+..+++..-++++ .+..+|-+. .-++.+-.++.++.++||+++...++.......... + .+ .+
T Consensus 230 ~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg--~--~s-r~ 304 (429)
T 3qe7_A 230 TILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITR--V--YS-TW 304 (429)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHT--B--CC-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcC--C--cc-hH
Confidence 334555555545443 344556322 458999999999999999988766544333221111 1 11 11
Q ss_pred HHHHHHHHHHHHHHHHhh-hhchhhhhcchhHHHHHHHHHHHHHHHHhhhhh
Q psy18113 103 VAFLTFLTGLVQLTCGLL-SLGFVVEFVSLPVVSGFTSSTAIIMASSQLKYF 153 (542)
Q Consensus 103 ~~~~~~l~Gii~~llg~~-rlg~l~~~ip~~V~~Gf~~gigl~i~~~ql~~~ 153 (542)
....+|++.+++|++ +++.+...+|.||+.|...-.=-.+..+.++.+
T Consensus 305 ---~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 305 ---VIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp ---HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999987 589999999999999965443333444545444
No 17
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=32.99 E-value=28 Score=20.64 Aligned_cols=19 Identities=26% Similarity=0.467 Sum_probs=14.4
Q ss_pred hhHHhHHHHHHHhhhcCCC
Q psy18113 59 GLYSSIFGGVMYIFLGTTK 77 (542)
Q Consensus 59 gl~~~~~~~ii~~lfgss~ 77 (542)
.+.++.+++++|++|++-|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4678888999999998755
No 18
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=20.59 E-value=2.7e+02 Score=25.64 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=41.3
Q ss_pred ceEEEEEeCCccccc------------cHHHHHHHHHhhhhhccchhhhhhhcCCCCCeEEEEEccCCCcccHHHHHHHH
Q psy18113 464 FEFWLFEPSGGLLFP------------TVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKT 531 (542)
Q Consensus 464 ~~i~i~r~~g~LfF~------------na~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~vIlD~~~v~~iD~ta~~~l~ 531 (542)
+++.+++++|.+.=. +.+.+.+.+++ .. +++ ..+.|||+... .+-|.++.+.+.
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~----------a~-~d~--~v~~ivL~~~s-~Gg~~~~~~~i~ 68 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLER----------AK-DDK--TVKGIVLKVNS-PGGGVYESAEIH 68 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHH----------HH-HCT--TEEEEEEEEEE-CCBCHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHH----------HH-hCC--CcEEEEEEecC-CCCCHHHHHHHH
Confidence 367788888877543 34566666665 21 121 24578888764 677888888888
Q ss_pred HHHHHHhh
Q psy18113 532 FLFRDCNN 539 (542)
Q Consensus 532 ~l~~~~~~ 539 (542)
+..+++++
T Consensus 69 ~~l~~~~~ 76 (240)
T 3rst_A 69 KKLEEIKK 76 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777765
Done!