RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18113
(542 letters)
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 317 bits (815), Expect = e-102
Identities = 171/552 (30%), Positives = 276/552 (50%), Gaps = 56/552 (10%)
Query: 14 PILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFL 73
P+L WLP Y + D++AG+TVG+ LIPQA+AYA LAGL+P YGLY+S +Y
Sbjct: 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALF 60
Query: 74 GTTKQLSVGPTSIMALLC--------LTYTHDTSLEMVAF-LTFLTGLVQLTCGLLSLGF 124
GT++ +++GP ++M+LL L Y D +AF LT L G+ Q+ GLL LGF
Sbjct: 61 GTSRDIAIGPVAVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGF 120
Query: 125 VVEFVSLPVVSGFTSSTAIIMASSQLKYFLGIQ--FKPKNFLDMYVQLFKNIGKTKYSDL 182
++EF+S V+SGF + AI + SQLK LGI + L + + + + T +
Sbjct: 121 LIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWAGLPNTHNWNW 180
Query: 183 SLGVACVVLLLFMKRLQDIKLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIITYVL 242
V +VLLLF+ + + K K L+ + +++ +T L
Sbjct: 181 CTLVIGLVLLLFLLYTKKLG-----------KRNKKLLFAPAVAPLLVVILATLAVTIGL 229
Query: 243 KNTHEKVPFALVGNIESGFPSLAFPPTHININGTDLGLLDMVSHLNTGIFLVPLVGLVAN 302
H+K +++G+I SG + + L + +VGL+ +
Sbjct: 230 ---HKKQGVSILGHIPSGLSFFPPITLDWEL----------LPTLAPDAIAIAIVGLIES 276
Query: 303 VAIAKAFSE--GKIVDASQEMIALGMGNLAGSFINAMPVASSFSRSAVNNASGVQTTLGG 360
+AIA++F+ G +DA+QE++A G+ N+ GSF + P S SR+AVN +G +T L G
Sbjct: 277 IAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQLSG 336
Query: 361 LYTSIIVLLSLSLLTPYLQYIPQASLAAVLVCAVLTLVEIEIMAVLWKTNKRNFLTLVVT 420
+ T+I+VLL L +LTP YIPQA+LAA+++ AV L++ + + LWK +K +F+ +VT
Sbjct: 337 VVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVT 396
Query: 421 FAACLLIGIEIGLLCGICLDIFNLLHFNARPNVHFDKKVTDMGF--------------EF 466
F + IEIGLL G+ L LL ARP +V
Sbjct: 397 FFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGI 456
Query: 467 WLFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTA 526
++ G L F + L++ +L +I ++ + + +I++ S + D +
Sbjct: 457 LVYRVDGPLYFANAEDLKDRLLKRIEDETRRELERPPLQV-----VILDMSAVPHLDTSG 511
Query: 527 AKVKTFLFRDCN 538
L ++
Sbjct: 512 IHALEELRKELK 523
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 272 bits (697), Expect = 2e-84
Identities = 146/546 (26%), Positives = 246/546 (45%), Gaps = 67/546 (12%)
Query: 11 RKVPILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMY 70
++P L WLP Y + D+LAG+TV +P A+A+A AG+ P+ GLY+SI G++Y
Sbjct: 5 SEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIY 64
Query: 71 IFLGTTKQLSVGPTSIMALLC---LTYTHDTSLEMVAFLTFLTGLVQLTCGLLSLGFVVE 127
G ++ L GPT A++ + +T L + T L G+ Q+ GLL LG ++
Sbjct: 65 ALFGGSRGLISGPTGAFAVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLGRLIR 124
Query: 128 FVSLPVVSGFTSSTAIIMASSQLKYFLGIQFKPKNFLDMYVQLFKNIGKTKYSDLSLGVA 187
F+ PV+ GFT+ AI++ +QL LG+ K F LF + + L LG+
Sbjct: 125 FIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLLTINLATLLLGLL 184
Query: 188 CVVLLLFMKRLQDIKLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIITYVLKNTHE 247
+ +LLF+ RL + S L L+ +I ++
Sbjct: 185 TLAILLFLPRL--------------TPRIPSPL---------IALVLGTLIVWIFPLDSL 221
Query: 248 KVPFALVGNIESGFPSLAFPPTHININGTDLGLLDMVSHLNTGIFLVPLVGLVANVAIAK 307
+ + G++ SG P P L ++ L + L+GL+ ++ A
Sbjct: 222 RY-GEIPGSLPSGLPHFRLPNVS----------LSLLLALLPYALALALLGLLESLLTAV 270
Query: 308 AFSE--GKIVDASQEMIALGMGNLAGSFINAMPVASSFSRSAVNNASGVQTTLGGLYTSI 365
+F G D+++E+IA G+ N+A +P S SRSA+N SG +T L G+ +
Sbjct: 271 SFDGMTGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAA 330
Query: 366 IVLLSLSLLTPYLQYIPQASLAAVLVCAVLTLVEIE-IMAVLWKTNKRNFLTLVVTFAAC 424
++LL L L P + YIP A+LAAVL+ L++ + +L K + L L+ T
Sbjct: 331 LLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLT 390
Query: 425 LLIGIEIGLLCGICLDIFNLLHFNARPNVHF-------------DKKVTDMGFEFWLFEP 471
+ + IG++ GI L + +RP++ K + ++G ++
Sbjct: 391 VFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAGSDNALKPLDEIGPGVLVYRL 450
Query: 472 SGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKT 531
SG L F D L +L I E+ + +I++ + D +AA+
Sbjct: 451 SGPLFFGNADRLERALLGLI-EERPER-------------VILDLKSVPYIDASAAEALE 496
Query: 532 FLFRDC 537
L ++
Sbjct: 497 DLIKEL 502
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 162 bits (412), Expect = 6e-46
Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 35/306 (11%)
Query: 118 GLLSLGFVVEFVSLPVVSGFTSSTAIIMASSQLKYFLGIQFKPKNFLDMYVQLFKNIG-- 175
GLL LGF+VEF+S V+SGF + AI++ SQLK LG+ + V + + +
Sbjct: 2 GLLRLGFLVEFLSRAVISGFMAGAAILILLSQLKGLLGLSNTRHSG---IVSVLRALFDL 58
Query: 176 ---KTKYSDLSLGVACVVLLLFMKRLQDIKLTDKEPPGVKIKYLKSFLWFISTGRNAFIL 232
+ L +G++ ++ LL +K L K LK W I +
Sbjct: 59 VDNLWNWPTLVIGLSFLIFLLIIKLL--------------PKRLKKLFW-IPAPAPLVAV 103
Query: 233 MGCAIITYVLKNTHEKVPFALVGNIESGFPSLAFPPTHININGTDLGLLDMVSHLNTGIF 292
+ +I+Y+ V +++G I SG P + P ++ ++ L
Sbjct: 104 IVATVISYIFLADRYGV--SIIGEIPSGLPPPSLPDVPLD--------WSLLLDLLPIAL 153
Query: 293 LVPLVGLVANVAIAKAFSE--GKIVDASQEMIALGMGNLAGSFINAMPVASSFSRSAVNN 350
+ +VGL+ ++ AK+F++ G +D+++E++A G+ N+ S P SFSRSAVN
Sbjct: 154 ALAIVGLLESILTAKSFAKKKGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSAVNV 213
Query: 351 ASGVQTTLGGLYTSIIVLLSLSLLTPYLQYIPQASLAAVLVCAVLTLVEIEIMAVLWKTN 410
+G +T L G+ +++VLL L LTP L YIP A LAA+++ A++ L++ + LWK +
Sbjct: 214 KAGAKTQLSGIVMAVVVLLVLLFLTPLLAYIPMAVLAAIIIVALIGLIDWSELIRLWKLS 273
Query: 411 KRNFLT 416
K +FL
Sbjct: 274 KSDFLI 279
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries
a highly conserved GLY sequence motif, but the function
of the domain is not known.
Length = 83
Score = 116 bits (293), Expect = 1e-31
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 13 VPILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIF 72
+PIL WLPKY+ + D++AG+TV L LIPQ +AYA LAGL P YGLY+S ++Y
Sbjct: 1 LPILQWLPKYSRSWLKGDLIAGLTVALVLIPQGMAYALLAGLPPVYGLYASFVPPLIYAL 60
Query: 73 LGTTKQLSVGPTSIMALL 90
G+++ LSVGPT+ ++LL
Sbjct: 61 FGSSRHLSVGPTAAISLL 78
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 126 bits (320), Expect = 4e-31
Identities = 105/391 (26%), Positives = 188/391 (48%), Gaps = 38/391 (9%)
Query: 17 AWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTT 76
W KY D++AGITVG+ IP A+A A +G+ P+YGLY++ G++ G +
Sbjct: 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGS 78
Query: 77 KQLSV-GPTSIMALLCLTYTHDTSLEMVAFLTFLTGLVQLTCGLLSLGFVVEFVSLPVVS 135
+ SV GPT+ ++ + L + T ++G++ + GL LG ++E++ L V
Sbjct: 79 R-FSVSGPTAAFVVILYPVSQQFGLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTL 137
Query: 136 GFTSSTAIIMASSQLKYFLGIQFK--PKNFLDMYVQLFKNIGKTKYSDLSLGVACVVLLL 193
GFTS I++A+ Q+K F G+Q P+++L+ LF+ + + D +G+ + +L+
Sbjct: 138 GFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLI 197
Query: 194 FMKRLQDIKLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIIT------YVLKNTHE 247
RL+ I+L P + + + + L+G + T YVL +
Sbjct: 198 LWPRLK-IRL----PGHLPALLAGTAVMGV------LNLLGGHVATIGSRFHYVLAD--- 243
Query: 248 KVPFALVGN-IESGFPSLAFPPTHININGTDLGL-LDMVSHLNTGIFLVPLVG-----LV 300
GN I P P +G L D++ L F + ++G L
Sbjct: 244 ----GSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLC 299
Query: 301 ANVAIAKAFSEGKIVDASQEMIALGMGNLAGSFINAMPVASSFSRSAVNNASGVQTTLGG 360
A V G A+ E++ G+GN+ F + ++ +RSA N +G + +
Sbjct: 300 AVVLDGMT---GTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISA 356
Query: 361 LYTSIIVLLSLSLLTPYLQYIPQASLAAVLV 391
+ +++VLL+L +L P L Y+P +++AA+L+
Sbjct: 357 VIHALLVLLALLVLAPLLSYLPLSAMAALLL 387
>gnl|CDD|132913 cd07042, STAS_SulP_like_sulfate_transporter, Sulphate Transporter
and Anti-Sigma factor antagonist domain of SulP-like
sulfate transporters, plays a role in the function and
regulation of the transport activity, proposed general
NTP binding function. The SulP family is a large and
diverse family of anion transporters, with members from
eubacteria, plants, fungi, and mammals. They contain 10
to 14 transmembrane helices which form the catalytic
core of the protein and a C-terminal extension, the STAS
(Sulphate Transporter and AntiSigma factor antagonist)
domain which plays a role in the function and regulation
of the transport activity. The STAS domain is found in
the C-terminal region of sulphate transporters and
bacterial anti-sigma factor antagonists. It has been
suggested that this domain may have a general NTP
binding function.
Length = 107
Score = 34.9 bits (81), Expect = 0.020
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 468 LFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAA 527
++ G L F +Y ++ +L + +++ L +I++ S ++ D TAA
Sbjct: 12 IYRIDGPLFFGNAEYFKDRLLRLV----DEDPPLK--------VVILDLSAVNFIDSTAA 59
Query: 528 KV 529
+
Sbjct: 60 EA 61
>gnl|CDD|201948 pfam01740, STAS, STAS domain. The STAS (after Sulphate Transporter
and AntiSigma factor antagonist) domain is found in the
C terminal region of Sulphate transporters and bacterial
antisigma factor antagonists. It has been suggested that
this domain may have a general NTP binding function.
Length = 106
Score = 29.5 bits (67), Expect = 1.2
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 468 LFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAA 527
+ G L F + RE +L + E + ++I++ S + D +
Sbjct: 12 ILRLDGPLDFANAEAFRERLLRALEEGEIR-------------HVILDLSGVPFIDSSGL 58
Query: 528 KVKTFLFRDCN 538
L+++
Sbjct: 59 GALLELYKELR 69
>gnl|CDD|225161 COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide
transport and metabolism].
Length = 436
Score = 31.4 bits (72), Expect = 1.4
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 311 EGKIVDASQEMIALGMGNLAGSFINAMPVASSFSRSAVNNASGVQTTLGGLYTSIIVLLS 370
GK+ + ++A + + G+ V +++ SA A+G +T L + T ++ LLS
Sbjct: 278 NGKMPRIGKALLADSVATVVGALFGTSTV-TAYIESAAGVAAGGRTGLTAVVTGLLFLLS 336
Query: 371 LSLLTPYLQYIPQASLAAVLVCAVLTLVEIEIMAVLWKTNKRNFLTLVVTFAACLLIG-- 428
L +P +P + A L+ V +++ + + + +F V F +++
Sbjct: 337 L-FFSPLAALVPGYATAPALII-----VGALMLSSVKQIDWSDFTEAVPAFLTIVMMPLT 390
Query: 429 --IEIGLLCGI 437
I G+ G
Sbjct: 391 YSIADGIAFGF 401
>gnl|CDD|218295 pfam04858, TH1, TH1 protein. TH1 is a highly conserved but
uncharacterized metazoan protein. No homologue has been
identified in Caenorhabditis elegans. TH1 binds
specifically to A-Raf kinase.
Length = 582
Score = 30.6 bits (69), Expect = 2.8
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 76 TKQLSVGPTSIMALLCLTYTHDTSLEMVAFLTFLTGLVQLTCGLLSLGFVVEFVSLPVVS 135
K +++ + L+ L +H LE++ L L+ LL+ G VV PV++
Sbjct: 453 RKHVALQGQVLELLVALFESHGDELEILVQLELKKMLLDRMVELLARGHVV-----PVIT 507
Query: 136 GFTSSTAII-MASSQLKYF 153
+ S ++YF
Sbjct: 508 YACQCWRRLDTDISLIRYF 526
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 30.3 bits (69), Expect = 3.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 356 TTLGGLYTSIIVLLSLSLLTPYLQYIPQASLAAVLVCAVLTLVEIEIMAVL 406
+TL L + I LL+L L+ Y + +L AV L LV I + VL
Sbjct: 252 STLTTLLSGIFALLNLGLM---FYYSWKLALVAVA----LALVAIAVTLVL 295
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 29.6 bits (67), Expect = 4.2
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 342 SFSRSAVNNASGVQTTLGGLYTSII-VLLSLSLLTPYLQYIPQASLAAVLVCAVLTLVEI 400
SR+ G++T L + +I+ L+ +SL+ L + A + V+ +
Sbjct: 40 GLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLF 99
Query: 401 EIMAVLWKTNKR 412
++ W+T+ R
Sbjct: 100 TVIVSDWRTDFR 111
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
This entry represents the conserved N-terminal region
found in several classes of cation-transporting P-type
ATPases, including those that transport H+, Na+, Ca2+,
Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
P-ATPases, this domain is found in the catalytic alpha
chain. In gastric H+/K+-ATPases, this domain undergoes
reversible sequential phosphorylation inducing
conformational changes that may be important for
regulating the function of these ATPases.
Length = 75
Score = 27.2 bits (61), Expect = 5.3
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 202 KLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIITYVL 242
+L + +++L+ F + +IL+ A+++ +L
Sbjct: 40 ELPPPKKTSPLLRFLRQFHNPLI-----YILLAAAVLSALL 75
>gnl|CDD|213023 cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology
domain of PgaB, IcaB, and similar proteins which consist
of a deformed (beta/alpha)8 barrel fold with 5- or
6-strands. This family belongs to the large and
functionally diverse carbohydrate esterase 4 (CE4)
superfamily, whose members show strong sequence
similarity with some variability due to their distinct
carbohydrate substrates. It includes bacterial
poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB,
hemin storage system HmsF protein in gram-negative
species, intercellular adhesion proteins IcaB, and many
uncharacterized prokaryotic polysaccharide deacetylases.
It also includes a putative polysaccharide deacetylase
YxkH encoded by the Bacillus subtilis yxkH gene, which
is one of six polysaccharide deacetylase gene homologs
present in the Bacillus subtilis genome. Sequence
comparison shows all family members contain a conserved
domain similar to the catalytic NodB homology domain of
rhizobial NodB-like proteins, which consists of a
deformed (beta/alpha)8 barrel fold with 6 or 7 strands.
However, in this family, most proteins have 5 strands
and some have 6 strands. Moreover, long insertions are
found in many family members, whose function remains
unknown.
Length = 157
Score = 28.3 bits (64), Expect = 5.8
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 1 MKTKLTELLHRKVPILAWLPKYNVNAAVSDVL--AGITVGLTLIP 43
K +L E L + V A+ P N V L AG T P
Sbjct: 94 SKERLEEELGKPVRSFAY-PYGRYNPRVIAALKEAGYKAAFTTDP 137
>gnl|CDD|119434 cd05174, PI3Kc_IA_delta, Phosphoinositide 3-kinase (PI3K), class
IA, delta isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. PI3Kdelta is mainly
expressed in immune cells and plays an important role in
cellular and humoral immunity. It plays a major role in
antigen receptor signaling in B-cells, T-cells, and mast
cells. It regulates the differentiation of peripheral
helper T-cells and controls the development and function
of regulatory T-cells.
Length = 361
Score = 28.9 bits (64), Expect = 7.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 394 VLTLVEIEIMAVLWKTNKRNFLTLVVTFAACLLIGIEIGLL 434
+LTL I++M VLWK L L +T CL G + GL+
Sbjct: 109 MLTLQMIQLMDVLWKQEG---LDLRMTPYGCLSTGDKTGLI 146
>gnl|CDD|163411 TIGR03699, mena_SCO4550, menaquinone biosynthesis protein, SCO4550
family. members of this protein family are involved in
menaquinone biosynthesis by an alternate pathway via
futalosine [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 340
Score = 28.8 bits (65), Expect = 7.7
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 462 MGFEFWLFEP-----SGGLLFPTVDYLREVVLSKIYEDNNKN 498
F W F+P + +YL+ + +S+I+ DN N
Sbjct: 230 TAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPN 271
>gnl|CDD|217761 pfam03850, Tfb4, Transcription factor Tfb4. This family appears to
be distantly related to the VWA domain.
Length = 270
Score = 28.8 bits (65), Expect = 7.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 396 TLVEIEIMAVLWKTNKRNFLTL----VVTF-AACLLIG--IEIGLLCGICLDIF 442
L++ + A L + R+ L L V F A+C ++IG +C +CL IF
Sbjct: 206 GLLQYLLTAFLPDPSSRSHLVLPTPSSVDFRASCFCHRKVVDIGYVCSVCLSIF 259
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 28.8 bits (65), Expect = 8.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 98 TSLEMVAFLTFLTGLVQLTCGLLSLGFVVEFVS--------LPVVSGFTSSTAIIMASSQ 149
+++ M+A + G + G L +G VV FV L V F + + MA+ +
Sbjct: 250 STITMLAI--LVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQ--VFMAAPK 305
Query: 150 LKYF 153
L+ F
Sbjct: 306 LEEF 309
>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 28.2 bits (63), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 139 SSTAIIMASSQLKYFL--GIQFKPKNFLDMY-VQLFKN 173
+ +IMA KY + GIQF P++ L + Q+ +N
Sbjct: 147 TEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRN 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.414
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,544,874
Number of extensions: 2772323
Number of successful extensions: 3637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3597
Number of HSP's successfully gapped: 113
Length of query: 542
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 440
Effective length of database: 6,413,494
Effective search space: 2821937360
Effective search space used: 2821937360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)