RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18113
(542 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 85/456 (18%), Positives = 143/456 (31%), Gaps = 128/456 (28%)
Query: 98 TSLEMVA-FLTFLTGLVQ-----LTCGLLSLGFVVEFVSLPVVSG-----FTSSTAIIMA 146
T E+V FL +++ LV+ +L+L EF + + G +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFEN-CYLEGNDIHALAAKLLQEND 113
Query: 147 SSQLKYFLGIQFKPKNFLDMYVQLFKNIGKTKYSDL----SLGVACVVLLL--------F 194
++ +K I KN++ + + K S L G A +V + +
Sbjct: 114 TTLVKTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 195 MKRLQDIKLTDKEPPGVK--IKYLKSFLWFISTGR---NAFILMGCAIITYVLKNTHEK- 248
+ L+D L V IK+ L + G I+ + L+N
Sbjct: 170 FEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTP 226
Query: 249 -------VPFALVGNIESGFPSLAFPPTHININGTDLGL--LDMVSHLNTGIFLVPLVGL 299
+P + G LA H + LG ++ S+L G GL
Sbjct: 227 DKDYLLSIPISCPLI---GVIQLA----HYVVTAKLLGFTPGELRSYL-KGA-TGHSQGL 277
Query: 300 VANVAIAKAFSEGKIVDASQEMIAL--GMGNLAGSFINAMPVAS---SFSRSAVNNASGV 354
V VAIA+ S + ++ I + +G + A P S S ++ N GV
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIG-VRCY--EAYPNTSLPPSILEDSLENNEGV 334
Query: 355 QTT-LGGLYTSIIVLLSLSLLTPYL----QYIPQASLAAVLVCAVLTLVEIEIMAVLWKT 409
+ L I L+ + Y+ ++P + +LV
Sbjct: 335 PSPMLS------ISNLTQEQVQDYVNKTNSHLPAGKQVEI------SLV----------- 371
Query: 410 N-KRNFLTLVVTFAACLLIGIEIGL---LCGICLDIFNLLHFNARPN-----VHFDKKVT 460
N +N VV+ G L G+ L L A + F ++
Sbjct: 372 NGAKNL---VVS-----------GPPQSLYGLNL---TLRKAKAPSGLDQSRIPFSERKL 414
Query: 461 DMGFEFWL--FEPSGGLLFPTVDYLREVVLSKIYED 494
F L P F + L I +D
Sbjct: 415 KFSNRF-LPVASP-----FHS-HLLVPAS-DLINKD 442
Score = 48.9 bits (116), Expect = 5e-06
Identities = 88/552 (15%), Positives = 153/552 (27%), Gaps = 218/552 (39%)
Query: 23 NVNAAVSDVLAGITVGLTLIPQAI-AY--ASLAGLNP----------------KYGLYSS 63
+++A + +L L + I Y A + P L +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA- 158
Query: 64 IFGG----VMYIF-----LGTTKQLSVGP---TSIMALLCLT---------YTHDTSLEM 102
IFGG Y F L T + VG S L L +T L +
Sbjct: 159 IFGGQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNI 215
Query: 103 VAFLT---------FLT---------GLVQL-----TCGLLSL--GFVVEFVS--LPVVS 135
+ +L +L G++QL T LL G + ++
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 136 GFTSSTAIIMASSQLKYFLGIQFKPKNFLDMYVQLFKNIGKTKYSDLSLGVACV----VL 191
G ++ AI S + F + LF +GV C
Sbjct: 276 GLVTAVAIAETDS-WESFF------VSVRKAITVLF-----------FIGVRCYEAYPNT 317
Query: 192 LLFMKRLQDIKLTDKEPP-------GVKIKYLKSFLWFISTGRNAFILMGCAIITYVLKN 244
L L+D ++ P + + ++ + + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY------------------VNKT--N 357
Query: 245 THEKVPFALVGNIESGFPSLAFPPT-HINI---NGTDLGLLDMVSHLNTGIFLVP---LV 297
+H P + I NG ++V +G P L
Sbjct: 358 SH-------------------LPAGKQVEISLVNGAK----NLVV---SG----PPQSLY 387
Query: 298 GLVANVAIAKA----------FSEGKIVDASQEMIALGMGNLAGSF--INAMPVASSFSR 345
GL + AKA FSE K+ + F + + P S
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLK-------------FSNRFLPVAS-PFHSHLLV 433
Query: 346 SAVNNASGVQTTLGGLYTSIIVLLSLSLLTP-Y-------LQYIPQASLAAVLVCAVLTL 397
A L + + + + P Y L+ + S++ +V ++
Sbjct: 434 PAS------DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL-SGSISERIVDCIIR- 485
Query: 398 VEIEIMAVLWKTNKRNFLTLVVTFAACLLIGIEIGLLC-----GICLDIFNLLHFNARPN 452
+ V W+T + T ++ F G +G+L G + + + P+
Sbjct: 486 -----LPVKWETTTQFKATHILDFGPGGASG--LGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 453 VHFDKKVTDMGF 464
D GF
Sbjct: 539 -------DDYGF 543
Score = 43.5 bits (102), Expect = 2e-04
Identities = 41/226 (18%), Positives = 62/226 (27%), Gaps = 68/226 (30%)
Query: 234 GCAIITYVLKNTHEKVPFALVGNIESGFPSLAFPPTHININGTDLGLLDMVSHLNT--GI 291
G I E + + E F + T GLL T +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKL-KTEKIFKEINEHSTSYTFRSEK-GLLSATQ--FTQPAL 1736
Query: 292 FLVPLV--------GLV---------------ANVAIAKAFS-E---------GKIVDAS 318
L+ GL+ A ++A S E G + +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 319 QEMIALGMGNLAGSFINAMPVASSFSR------------------SAVN-NASGVQTTLG 359
LG N IN VA+SFS+ VN N Q
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 360 GLYTSIIVLLSLSLLTPYLQY--IPQASLAAVLVCAVLTLVEIEIM 403
G L +L +T L + + + + + L+L E+E
Sbjct: 1857 GD------LRALDTVTNVLNFIKLQKIDIIELQKS--LSLEEVEGH 1894
Score = 42.0 bits (98), Expect = 5e-04
Identities = 44/314 (14%), Positives = 80/314 (25%), Gaps = 131/314 (41%)
Query: 194 FMKRLQD--IKLTDKEPPGVKIKYLKSFLWFISTGRNAFILMGCAIITYVLKNTHEKVPF 251
F K L + + P + + FL ++S+ VL
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP---SKVGQFDQVLN-------- 85
Query: 252 ALVGNIESGFPSLAFPPTHININGTDLGLLDMVSHLNTGIFLVPLVGLVANVAIAKAFSE 311
+ E+ + + G D+ H L A +
Sbjct: 86 LCLTEFENCY-----------LEGNDI-------H-----------ALAAKLLQ----EN 112
Query: 312 GKIVDASQEMIALGMGNLAGSFINAMPVA---------SSFSRSAVNNASGVQTTLGGLY 362
+ ++E+I ++I A +A S+ R+ + + GG
Sbjct: 113 DTTLVKTKELIK--------NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-- 162
Query: 363 TSIIVLLSLSLLTPYLQ-----YIPQASLAAVLVCAVLTLVEIEIMAVLWKTNKRNFLTL 417
Q Y + L + L++T +
Sbjct: 163 ----------------QGNTDDYFEE-------------LRD------LYQT-YHVLVGD 186
Query: 418 VVTFAACLLIGIEIGLLCGICLDIFNLLHFNARPNVHFDKKVTDMGFEF--WLFEPSGGL 475
++ F+A L L+ F + G WL PS
Sbjct: 187 LIKFSAETL---------------SELIRTTLDAEKVFTQ-----GLNILEWLENPS--- 223
Query: 476 LFPTVDYLREVVLS 489
P DYL + +S
Sbjct: 224 NTPDKDYLLSIPIS 237
Score = 30.4 bits (68), Expect = 1.8
Identities = 43/274 (15%), Positives = 69/274 (25%), Gaps = 122/274 (44%)
Query: 318 SQEMIALGMG-NLAGSFINAMPVASS--------------FSRSAV--NNASGVQTTLGG 360
SQE GMG +L + A FS + NN + GG
Sbjct: 1626 SQE---QGMGMDLYKTS----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 361 --------LYTSII--------------------VLLSLSL--------LTPYLQYIPQA 384
Y+++I S + T + Q P
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--P-- 1734
Query: 385 SLAAVLVCAVLTLVEIEIMAVLWKTNKRNFLTLVVTFA----------ACL--LIGIEIG 432
A LTL+E L + + TFA A L ++ IE
Sbjct: 1735 --------A-LTLMEKAAFEDLK---SKGLIPADATFAGHSLGEYAALASLADVMSIE-- 1780
Query: 433 LLCGICLDIFNLLHF------NARPNVHFDKKVTDMGFEFWLFEPSGGLLFPTVDYLREV 486
+ ++ + A P + M P + + L+ V
Sbjct: 1781 -------SLVEVVFYRGMTMQVAVPRDELGRSNYGMI----AINPGRVAASFSQEALQYV 1829
Query: 487 VLSKIYEDN-------NKNKMLHRTRAAGDVYII 513
V ++ + N N Y+
Sbjct: 1830 V-ERVGKRTGWLVEIVNYN-------VENQQYVA 1855
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima
MSB8}
Length = 326
Score = 32.6 bits (75), Expect = 0.31
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 1 MKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAGITVGLTLI 42
++T++T+LL + PIL AW + AAVS+ AG GL +I
Sbjct: 15 VRTRVTDLLEIEHPILMGGMAWAGTPTLAAAVSE--AG---GLGII 55
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis,
antibiotics, oxidoreductase, flavoprotein; HET: FMN;
1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 32.3 bits (74), Expect = 0.34
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 1 MKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAGITVGLTLI 42
MKT++TELL PI AW+ ++ AVS AG GL +I
Sbjct: 1 MKTRITELLKIDYPIFQGGMAWVADGDLAGAVSK--AG---GLGII 41
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 32.3 bits (74), Expect = 0.35
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 1 MKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAG 34
+T+ TE + PI+ W+ + + AAV++ AG
Sbjct: 4 FRTRFTETFGVEHPIMQGGMQWVGRAEMAAAVAN--AG 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.44
Identities = 54/375 (14%), Positives = 101/375 (26%), Gaps = 112/375 (29%)
Query: 73 LGTTKQLSVGPTSIMALLCLTYTHDTSLEMVAFLTFLTGLVQLTCGLLSLGFVVEFVSLP 132
L TT+ V L T TH + LT LL LP
Sbjct: 269 LLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLDCRPQDLP 319
Query: 133 --VVSGFTSSTAIIMAS-----SQLKYFLGIQFK--------------PKNFLDMYVQLF 171
V++ +II S + + + P + M+ +L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 172 ---KNIGKTKYSDLSLGVACVV--------LLLFMKRLQDIKLTDKEPPGVKIKYLKSFL 220
+ + + ++ +++ + +L L +K+P I +L
Sbjct: 380 VFPPSA------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 221 WFISTGRNAFILMGCAIITYVLKNTHEKVPFALVGNIESGFPSLAFPPTHININGTD--- 277
N + L H + ++ F + D
Sbjct: 434 ELKVKLENEYAL-------------HRSI-------VDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 278 ---LGLLDMVSHLNTGIFLVPLVGLVANVAIAKAFSEGKIVDASQEMIALGMGNLAGSFI 334
+G HL N+ + + M+ L + F+
Sbjct: 474 YSHIG-----HHL-------------KNIEHPERMTL-------FRMVFL---DF--RFL 503
Query: 335 NAMPVASSFSRSAVNNASGVQTTLGGL--YTSIIVLLSLS---LLTPYLQYIPQASLAAV 389
S +A N + + TL L Y I L+ L ++P+ +
Sbjct: 504 EQKIRHDS---TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE-ENL 559
Query: 390 LVCAVLTLVEIEIMA 404
+ L+ I +MA
Sbjct: 560 ICSKYTDLLRIALMA 574
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate,
antisigma factor antagonist, ensemble structures,
transport protein; NMR {Mycobacterium bovis}
Length = 130
Score = 30.0 bits (68), Expect = 0.90
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 468 LFEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAA 527
++ L F + R L+ + +D + + + ++N + D TA
Sbjct: 18 VYRYDAPLCFANAEDFRRRALTVVDQDPGQVE-----------WFVLNAESNVEVDLTAL 66
Query: 528 KV 529
Sbjct: 67 DA 68
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor
prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Length = 143
Score = 28.9 bits (65), Expect = 2.1
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 469 FEPSGGLLFPTVDYLREVVLSKIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAK 528
F+ + + + D + K + ++N +I++ + ++ D K
Sbjct: 34 FQINAPIYYANSDLYSSALKRKTGVNGSENI----------HTVILDFTQVNFMDSVGVK 83
Query: 529 VKTFLFRDCNN 539
+ ++ +
Sbjct: 84 TLAGIVKEYGD 94
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 29.5 bits (66), Expect = 2.5
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 289 TGIFLVPLVGLVANVAIAKAFSEGKIVDASQEMIALGMGNLAGSFINA 336
TG +PL+ IA +DA M+ + +AG
Sbjct: 50 TGRIALPLIARGYRY-IA--------LDADAAMLEVFRQKIAGVDRKV 88
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 27.3 bits (61), Expect = 9.1
Identities = 3/41 (7%), Positives = 9/41 (21%), Gaps = 9/41 (21%)
Query: 289 TGIFLVPLVGLVANVAIAKAFSEGKIVDASQEMIALGMGNL 329
G + L+ + +D + +
Sbjct: 28 NGFYCKYLLEFATKL-YC--------IDINVIALKEVKEKF 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.414
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,997,963
Number of extensions: 487876
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 19
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)