RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18113
         (542 letters)



>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 26.5 bits (58), Expect = 3.7
 Identities = 12/47 (25%), Positives = 16/47 (34%)

Query: 490 KIYEDNNKNKMLHRTRAAGDVYIIINCSHIDKTDYTAAKVKTFLFRD 536
            IY     N      R   D  ++INC+      Y  A      +RD
Sbjct: 35  HIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWRD 81


>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
           mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 335

 Score = 27.4 bits (60), Expect = 4.4
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 25/96 (26%)

Query: 155 GIQFKPKNFLDMYVQLFKNIGKTKYS------DLSLG--VACVVLLLFMKRLQDIKLTDK 206
           G+Q K    +D Y    + +G           +       A       +K LQD     +
Sbjct: 1   GLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFA-------LKMLQDCPKARR 53

Query: 207 E---------PPGVKIKYLKSFLWFISTGRNAFILM 233
           E          P + ++ +  +    +  +   I+M
Sbjct: 54  EVELHWRASQCPHI-VRIVDVYENLYAGRKCLLIVM 88


>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
           catalytic domain {Helicobacter pylori [TaxId: 210]}
          Length = 389

 Score = 27.0 bits (60), Expect = 7.0
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 24/81 (29%)

Query: 1   MKTKLTEL-----LHRKVPILAWLPKYNVNAAV----SDVLAGITVG------------L 39
            K +   L      +    I  +L KY +N A+    S+ +  + VG            +
Sbjct: 252 NKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANI 311

Query: 40  TLIPQAIAYASLAGLNPKYGL 60
           T + QA AY    G+  + GL
Sbjct: 312 TFVSQA-AYD--KGIKEELGL 329


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,895,455
Number of extensions: 86161
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 3
Length of query: 542
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 452
Effective length of database: 1,171,896
Effective search space: 529696992
Effective search space used: 529696992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)