BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18114
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 107/279 (38%), Gaps = 32/279 (11%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHP 67
V++ G G +GR + + +N+ V F+R +F NL+
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAV---------------GCGFRRARPKFEQVNLLDS 49
Query: 68 STCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSI----NCATAAARYG 123
+ I D +++CAAE RP E + +L++ N A AA G
Sbjct: 50 NAVHHII------HDFQPHVIVHCAAERRPDVVEN-QPDAASQLNVDASGNLAKEAAAVG 102
Query: 124 ILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVY 183
+ ISS + +E D P P + K K EKA+LE L ++R ++Y
Sbjct: 103 AF-LIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLE-NNLGAAVLRIPILY 160
Query: 184 GKSDRHNLAPRLVMCAIYQYLGETLQL-FGGKSLPLNTVHVADLSRAIWHLLSELPPAKV 242
G+ ++ + VM Q+ ++ + + P HV D++ L +
Sbjct: 161 GEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFP---THVKDVATVCRQLAEKRMLDPS 217
Query: 243 YREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTAS 281
+ +H + ++ + D F + ++ +T S
Sbjct: 218 IKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS 256
>pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit In Orthorhombic Crystal Form
Length = 315
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHP 67
V++ G G +GR + + +N+ V F+R +F NL+
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAV---------------GCGFRRARPKFEQVNLLDS 49
Query: 68 STCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSI----NCATAAARYG 123
+ I D +++CAAE RP E + +L++ N A AA G
Sbjct: 50 NAVHHII------HDFQPHVIVHCAAERRPDVVEN-QPDAASQLNVDASGNLAKEAAAVG 102
Query: 124 ILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVY 183
+ ISS + +E D P P + K K EKA+LE L ++R ++Y
Sbjct: 103 AF-LIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLE-NNLGAAVLRIPILY 160
Query: 184 GKSDR 188
G+ ++
Sbjct: 161 GEVEK 165
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKVS-------PE---IAWLNEKQKKIFKRPL 56
V++ GG GF+G ++VE L+ L + V+D ++ P+ ++ + K+ +R
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAF 62
Query: 57 VEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCA 116
EF ++ H + + + S ++ L +E + E + G+ KL + +
Sbjct: 63 REFRPTHVSHQAAQASVKV-SVEDPVLDFEVNLLGGLNL----LEACRQYGVEKL-VFAS 116
Query: 117 TAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLN 173
T A YG E+ GE +E+ P+P S A K E L + GL
Sbjct: 117 TGGAIYG-----EVPEGE-------RAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLK 164
Query: 174 YTIVRPGVVYG-KSDRHNLAPRLVMCAIYQYLGETLQLF-----GGKSLPLNTVHVADLS 227
+ +R G VYG + D H A + + A G + L+ G + + V+V D++
Sbjct: 165 WVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVA 224
Query: 228 RAIWHLLSELPPAKVYREIYHV-VDMGNTCQEDLMS 262
A L L IY+V G+T +E LM+
Sbjct: 225 EAHALALFSL------EGIYNVGTGEGHTTREVLMA 254
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 27/160 (16%)
Query: 88 VINCAAETRPGQAEEIYREGIYKLSI----NCATAAARYGILKYVEISSGEICTSH-KHS 142
VINCAA T + EE Y + YK++ N A AA G + V+IS+ + K
Sbjct: 67 VINCAAHTAVDKCEEQY-DLAYKINAIGPKNLAAAAYSVG-AEIVQISTDYVFDGEAKEP 124
Query: 143 CKESDEPQPWSTIAKYKCQVEKALLEIPGLN--YTIVRPGVVYGKSDRHNLAPRLVMCAI 200
E DE P S K K + E + LN Y IVR +YG D +N +
Sbjct: 125 ITEFDEVNPQSAYGKTKLEGENF---VKALNPKYYIVRTAWLYG--DGNNFVKTXIN--- 176
Query: 201 YQYLGET---LQLFGGK-SLPLNTVHVADLSRAIWHLLSE 236
LG+T L++ + P +TV DL+R + ++ E
Sbjct: 177 ---LGKTHDELKVVHDQVGTPTSTV---DLARVVLKVIDE 210
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 29/200 (14%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKVSPEIA-----WLNE-----------KQKK 50
++I GGCGF+G NL + + L V D +S + A WL+ + K
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKN 63
Query: 51 IFKRPLVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYK 110
R + +++ + H + ++ S DN + +E IN +A Y
Sbjct: 64 DVTRLITKYMPDSCFHLAG-QVAMTTSIDNPCMDFE--INVGGTLNLLEAVRQYNS---N 117
Query: 111 LSINCATAAARYGIL---KYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL 167
+I ++ YG L KY E + C + ES + S K ++ +L
Sbjct: 118 CNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYML 177
Query: 168 E---IPGLNYTIVRPGVVYG 184
+ I GLN + R +YG
Sbjct: 178 DYARIFGLNTVVFRHSSMYG 197
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 105/278 (37%), Gaps = 32/278 (11%)
Query: 8 VVILGGCGFVGRNLVEHL-------VENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFI 60
+++ GG GF+G + V L V D + V+D ++ A + P + F+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT--YAGNRANLAPVDADPRLRFV 60
Query: 61 SGNLIHPSTCELIFLNSADNSDLTWEYVINCAAET---RPGQAEEIYREGIYKLSINCAT 117
G+ I + L D +++ AAE+ R ++ E + +
Sbjct: 61 HGD-IRDAGLLARELRGVDA-------IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 118 AAARYGILKYVEISSGEICTS-HKHSCKESDEPQPWSTIAKYKCQ---VEKALLEIPGLN 173
A G+ + V +S+ E+ S S ES +P S A K V +A GL+
Sbjct: 113 CAVDAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 174 YTIVRPGVVYGKSDRHNLAPRLVMCAIYQYL-GETLQLFGGKSLPLNTVHVADLSRAIWH 232
I R YG + +L+ + L G TL L+G + VH D R I
Sbjct: 173 VRITRCCNNYGP---YQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGV 270
+L+ EIYH+ +L L D G
Sbjct: 230 VLA----GGRAGEIYHIGGGLELTNRELTGILLDSLGA 263
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 105/278 (37%), Gaps = 32/278 (11%)
Query: 8 VVILGGCGFVGRNLVEHL-------VENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFI 60
+++ GG GF+G + V L V D + V+D ++ A + P + F+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT--YAGNRANLAPVDADPRLRFV 60
Query: 61 SGNLIHPSTCELIFLNSADNSDLTWEYVINCAAET---RPGQAEEIYREGIYKLSINCAT 117
G+ I + L D +++ AAE+ R ++ E + +
Sbjct: 61 HGD-IRDAGLLARELRGVDA-------IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ 112
Query: 118 AAARYGILKYVEISSGEICTS-HKHSCKESDEPQPWSTIAKYKCQ---VEKALLEIPGLN 173
A G+ + V +S+ ++ S S ES +P S A K V +A GL+
Sbjct: 113 CAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLD 172
Query: 174 YTIVRPGVVYGKSDRHNLAPRLVMCAIYQYL-GETLQLFGGKSLPLNTVHVADLSRAIWH 232
I R YG + +L+ + L G TL L+G + VH D R I
Sbjct: 173 VRITRCCNNYGP---YQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL 229
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGV 270
+L+ EIYH+ +L L D G
Sbjct: 230 VLA----GGRAGEIYHIGGGLELTNRELTGILLDSLGA 263
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1)
From Archaeoglobus Fulgidus
Length = 313
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVS 38
+V+ GG GF+G ++V+ L E++ + VID +S
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLS 34
>pdb|1IZN|B Chain B, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|1IZN|D Chain D, Crystal Structure Of Actin Filament Capping Protein Capz
pdb|3LK3|B Chain B, Crystal Structure Of Capz Bound To The Cpi And Csi
Uncapping Motifs From Carmil
pdb|3LK4|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|E Chain E, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|H Chain H, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|K Chain K, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|N Chain N, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Q Chain Q, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|T Chain T, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|W Chain W, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|Z Chain Z, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|2 Chain 2, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|5 Chain 5, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|3LK4|8 Chain 8, Crystal Structure Of Capz Bound To The Uncapping Motif
From Cd2ap
pdb|2KZ7|B Chain B, Solution Structure Of The Carmil Cah3aB DOMAIN BOUND TO
CAPPING Protein (Cp)
pdb|3AAA|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
V-1
pdb|3AAE|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|D Chain D, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|F Chain F, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|H Chain H, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
pdb|3AAE|J Chain J, Crystal Structure Of Actin Capping Protein In Complex With
Carmil Fragment
Length = 277
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTE 292
L+ LPP ++ + + ++D+ + EDL+S++ + D V LC + G
Sbjct: 12 LMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDG--- 68
Query: 293 EINDKHLTPWT 303
D + +PW+
Sbjct: 69 ---DSYRSPWS 76
>pdb|2KXP|B Chain B, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 270
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTE 292
L+ LPP ++ + + ++D+ + EDL+S++ + D V LC + G
Sbjct: 11 LMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDG--- 67
Query: 293 EINDKHLTPWTQLCRKHNIDNTPLTPYIVPDM-LNLKPVHLDNA--KLRDTGFEFQV 346
D + +PW+ N + PL +P L V +NA + RD FE V
Sbjct: 68 ---DSYRSPWS------NKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGV 115
>pdb|3AA0|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Carmil
pdb|3AA1|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Ckip-1
pdb|3AA6|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With
The Cp- Binding Motif Derived From Cd2ap
pdb|3AA7|B Chain B, Crystal Structure Of Actin Capping Protein
Length = 244
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTE 292
L+ LPP ++ + + ++D+ + EDL+S++ + D V LC + G
Sbjct: 12 LMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDG--- 68
Query: 293 EINDKHLTPWTQLCRKHNIDNTPLTPYIVPDM-LNLKPVHLDNA--KLRDTGFEFQVPQL 349
D + +PW+ N + PL +P L V +NA + RD FE V +
Sbjct: 69 ---DSYRSPWS------NKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSV 119
>pdb|3LK2|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif
From Carmil
Length = 243
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTE 292
L+ LPP ++ + + ++D+ + EDL+S++ + D V LC + G
Sbjct: 12 LMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDG--- 68
Query: 293 EINDKHLTPWTQLCRKHNIDNTPLTPYIVPDM-LNLKPVHLDNA--KLRDTGFEFQVPQL 349
D + +PW+ N + PL +P L V +NA + RD FE V +
Sbjct: 69 ---DSYRSPWS------NKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSV 119
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 102/254 (40%), Gaps = 21/254 (8%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEN-DLLRVIDKVSPEIAWLNEKQKKIFKRPLVEF 59
N +++ GG GF+G N V + +++ + ++I+ + + K I P F
Sbjct: 20 FQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYF 79
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEE----IYREGIYKLSINC 115
+ G + + E + + + ++N AAE+ ++ E Y + ++
Sbjct: 80 VKGEIQNGELLEHVI------KERDVQVIVNFAAESHVDRSIENPIPFYDTNVIG-TVTL 132
Query: 116 ATAAARYGILKYVEISSGEICTSHKHSCKESDEP-----QPWSTIAKYKCQVEKALLEIP 170
+Y +K V++S+ E+ S + + ++E P+S+ + A +
Sbjct: 133 LELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTY 192
Query: 171 GLNYTIVRPGVVYGKSDR-HNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRA 229
L + R YG L P V A+ G+ L L+G + +HV D A
Sbjct: 193 QLPVIVTRCSNNYGPYQYPEKLIPLXVTNAL---EGKKLPLYGDGLNVRDWLHVTDHCSA 249
Query: 230 IWHLLSELPPAKVY 243
I +L + +VY
Sbjct: 250 IDVVLHKGRVGEVY 263
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 8 VVILGGCGFVGRNLVEHLVE 27
V+++GG GFVG NLV+ L+E
Sbjct: 35 VMVVGGAGFVGSNLVKRLLE 54
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 8 VVILGGCGFVGRNLVEHLVEND---LLRVIDKVSPEIAWLNEK 47
++I GG GFVG NL H EN + V+DK + N +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNR 55
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 8 VVILGGCGFVGRNLVEHLVEN--DLLRVIDKVS 38
++I GG GF+G +V H+++N D + IDK++
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT 35
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 88 VINCAAETRPGQAEEIYREGI-YKLSINCATAAARYGILKYVEISSGEICTSHKHSCKES 146
+++ A E P A+ G+ Y LS N +AAA + + VE+ + +K +
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA--NLRRAVELRPDDAQLWNKLGATLA 217
Query: 147 DEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGE 206
+ +P + Y +AL PG + V Y +++LA + ++ AIY +G
Sbjct: 218 NGNRPQEALDAYN----RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273
Query: 207 T 207
T
Sbjct: 274 T 274
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 88 VINCAAETRPGQAEEIYREGI-YKLSINCATAAARYGILKYVEISSGEICTSHKHSCKES 146
+++ A E P A+ G+ Y LS N +AAA + + VE+ + +K +
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA--NLRRAVELRPDDAQLWNKLGATLA 217
Query: 147 DEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGE 206
+ +P + Y +AL PG + V Y +++LA + ++ AIY +G
Sbjct: 218 NGNRPQEALDAYN----RALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273
Query: 207 T 207
T
Sbjct: 274 T 274
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 8 VVILGGCGFVGRNLVEH-LVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG-NLI 65
++I GG G +G NL+EH L + + VID + KR ++ ++G ++I
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFA------------TGKREVLPPVAGLSVI 70
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARYGIL 125
S + L A +S V + AA P E + + SIN A AA++ G+
Sbjct: 71 EGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNV-QGSINVAKAASKAGVK 129
Query: 126 KYVEISS 132
+ + +
Sbjct: 130 RLLNFQT 136
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 50/328 (15%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEN--DL-LRVIDKVSPEIAWLNEKQKKIFKRPLV 57
MSQ K +++ GG GF+G N V ++ N D+ + V+DK++ N+ + V
Sbjct: 1 MSQFK-NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA---GNKANLEAILGDRV 56
Query: 58 EFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCAT 117
E + G++ + EL+ D + +++ AAE+ + I+ I T
Sbjct: 57 ELVVGDI---ADAELV-----DKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYT 108
Query: 118 --AAARYGILKYVEISSGEICT---------------SHKHSCKESDEP-QPWSTIAKYK 159
AAR +++ +S+ E+ K + + + P P+S+
Sbjct: 109 LLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAAS 168
Query: 160 CQVEKALLEIPGLNYTIVRPGVVYGKSDR-HNLAPRLVMCAIYQYLGETLQLFGGKSLPL 218
+ KA + G+ TI YG PR + + G +L+G
Sbjct: 169 DLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNIL---AGIKPKLYGEGKNVR 225
Query: 219 NTVHVADLSRAIWHLLSELPPAKVY----------REIYHVVDMGNTCQEDLMSTLTDIF 268
+ +H D S +W +L++ + Y +E+ ++ +D +TD
Sbjct: 226 DWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRA 285
Query: 269 GVKHDYVGSVTASLCQLDLVGLTEEIND 296
G HD ++ AS + D +G T + D
Sbjct: 286 G--HDLRYAIDASKLR-DELGWTPQFTD 310
>pdb|4AKR|B Chain B, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
pdb|4AKR|D Chain D, Crystal Structure Of The Cytoplasmic Actin Capping Protein
Cap32_34 From Dictyostelium Discoideum
Length = 290
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTE 292
L+ LPP+++ + ++D+ EDL+S++ V +D V LC +
Sbjct: 30 LMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDA--- 86
Query: 293 EINDKHLTPWT 303
D + +PW+
Sbjct: 87 ---DSYRSPWS 94
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL--LRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+++ GG GF+G N+V+ L + + + V+D + ++N
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-------------------- 88
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARYGIL 125
L+ LN AD D +++I A G E I+ EG C++ G
Sbjct: 89 ------LVDLNIADYMDKE-DFLIQIMAGEEFGDVEAIFHEGA------CSSTTEWDG-- 133
Query: 126 KYVEISSGEICTSHKHSCKESDEPQPW-STIAKYKCQV------------------EKAL 166
KY+ ++ + H C E + P + S+ A Y + K L
Sbjct: 134 KYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFL 193
Query: 167 LE------IPGLNYTIV--RPGVVYGKSDRHNLAPRLVMCAIYQYL--GETLQLF-GGKS 215
+ +P N IV R VYG + H + V + L GE+ +LF G ++
Sbjct: 194 FDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSEN 253
Query: 216 LPLNTVHVADLSRA-IWHL 233
+ V+V D++ +W L
Sbjct: 254 FKRDFVYVGDVADVNLWFL 272
>pdb|2A35|A Chain A, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
pdb|2A35|B Chain B, 1.5 A Crystal Structure Of A Protein Of Unknown Function
Pa4017 From Pseudomonas Aeruginosa Pao1, Possible
Epimerase
Length = 215
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 100 AEEIYREGIYKLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYK 159
+EE +R + L + A G Y+ +S+ + K S + + K
Sbjct: 82 SEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA--LGADAKSSIFYN----------RVK 129
Query: 160 CQVEKALLEIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLN 219
++E+AL E TI RP +++G + LA L ++ GK +
Sbjct: 130 GELEQALQEQGWPQLTIARPSLLFGPREEFRLAEILA--------APIARILPGK---YH 178
Query: 220 TVHVADLSRAIWHLLSE 236
+ DL+RA+W L E
Sbjct: 179 GIEACDLARALWRLALE 195
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 8 VVILGGCGFVGRNLVEHLVE--NDLLRVIDKVS 38
++I GG GF+G LV +++ +D + V+DK++
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT 36
>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human
High- Conductance Ca2+ Gated K+ Channel (Bk Channel)
Length = 798
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 14 CGFVGRNLVEHLVENDLLRVIDKVSPEIAWL-----NEKQKKIFKRPL--VEFISGNLIH 66
CG + V + +++ L + D V+ EI +L N + + +FKR VEF G++++
Sbjct: 59 CGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLN 118
Query: 67 PSTCELIFLNSAD 79
P + + SAD
Sbjct: 119 PHDLARVKIESAD 131
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 14 CGFVGRNLVEHLVENDLLRVIDKVSPEIAWL-----NEKQKKIFKRPL--VEFISGNLIH 66
CG + V + +++ L + D V+ EI +L N + + +FKR VEF G++++
Sbjct: 9 CGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLN 68
Query: 67 PSTCELIFLNSAD 79
P + + SAD
Sbjct: 69 PHDLARVKIESAD 81
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 8 VVILGGCGFVGRNLVEHLVE 27
+V+ GG GF+G +LV+ LVE
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus
Length = 726
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 14 CGFVGRNLVEHLVENDLLRVIDKVSPEIAWL-----NEKQKKIFKRPL--VEFISGNLIH 66
CG + V + +++ L + D V+ EI +L N + + +FKR VEF G++++
Sbjct: 9 CGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLN 68
Query: 67 PSTCELIFLNSAD 79
P + + SAD
Sbjct: 69 PHDLARVKIESAD 81
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 8 VVILGGCGFVGRNLVEHLVE 27
+V+ GG GF+G +LV+ LVE
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 29/102 (28%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL--LRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+++ GG GF+G N+V+ L + + + V+D + ++N
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-------------------- 41
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREG 107
L+ LN AD D +++I A G E I+ EG
Sbjct: 42 ------LVDLNIADYMDKE-DFLIQIMAGEEFGDVEAIFHEG 76
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 17 VGRNLVEHLVENDLLRVIDKVSPEIA-WLNEK--QKKIFKRPLVEFISGNLIHPSTCELI 73
V + +VE V+ D V +VS E WL EK + + RP+ I NL P EL+
Sbjct: 662 VDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721
Query: 74 FLNSADNSDLT 84
F + D +T
Sbjct: 722 FGSLVDGGQVT 732
>pdb|1S9R|A Chain A, Crystal Structure Of Arginine Deiminase Covalently Linked
With A Reaction Intermediate
pdb|1S9R|B Chain B, Crystal Structure Of Arginine Deiminase Covalently Linked
With A Reaction Intermediate
Length = 410
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 171 GLNYTIVRPGVV--YGKSDRHNLAPRLVMCAIYQYLGETLQLFGGK----SLPLN 219
G NY +RPGVV Y ++++ N A + + G L L G S+PL+
Sbjct: 350 GTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSMPLS 404
>pdb|1LXY|A Chain A, Crystal Structure Of Arginine Deiminase Covalently Linked
With L-Citrulline
pdb|1LXY|B Chain B, Crystal Structure Of Arginine Deiminase Covalently Linked
With L-Citrulline
Length = 409
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 171 GLNYTIVRPGVV--YGKSDRHNLAPRLVMCAIYQYLGETLQLFGGK----SLPLN 219
G NY +RPGVV Y ++++ N A + + G L L G S+PL+
Sbjct: 349 GTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSMPLS 403
>pdb|3D46|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D47|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
Length = 405
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 202 QYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPAKVYR 244
Q LG T+ G L +NT+ DL A+W L ++ VY+
Sbjct: 118 QMLGATMYYSGSGGLVMNTISCVDL--ALWDLFGKVVGLPVYK 158
>pdb|2PN1|A Chain A, Crystal Structure Of Carbamoylphosphate Synthase Large
Subunit (Split Gene In Mj) (Zp_00538348.1) From
Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 331
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 239 PAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQ 284
PA++YR + H +++ Q L DI+ +KHD V ++A+ Q
Sbjct: 287 PAQLYRNLXHEINVPQIGQ-----YLDDIYXLKHDTVTLISAAELQ 327
>pdb|2GSH|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2GSH|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
Length = 414
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 202 QYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPAKVYR 244
Q LG T+ G L +NT+ DL A+W L ++ VY+
Sbjct: 119 QMLGATMYYSGSGGLVMNTISCVDL--ALWDLFGKVVGLPVYK 159
>pdb|2P3Z|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2P3Z|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|3BOX|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3BOX|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3CXO|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
pdb|3CXO|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
Length = 415
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 202 QYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPAKVYR 244
Q LG T+ G L +NT+ DL A+W L ++ VY+
Sbjct: 120 QMLGATMYYSGSGGLVMNTISCVDL--ALWDLFGKVVGLPVYK 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,343,494
Number of Sequences: 62578
Number of extensions: 479972
Number of successful extensions: 1144
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 43
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)