RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18114
(359 letters)
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 96.0 bits (238), Expect = 2e-22
Identities = 65/358 (18%), Positives = 119/358 (33%), Gaps = 46/358 (12%)
Query: 10 ILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHPST 69
I+G G +G +L E L D KV + + + ++ ++ P
Sbjct: 6 IVGVTGIIGNSLAEILPLADTPGGPWKV---YGVARRTRPAWHEDNPINYVQCDISDPDD 62
Query: 70 CELIFLNSADNSDLTWEYVINCAAETRPGQA-EEIYREGIYKLSINCATAAARYGI-LKY 127
+ D V + T ++ E+ E K+ N A LK+
Sbjct: 63 SQAKLSPLTD--------VTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKH 114
Query: 128 VEISSGEIC-----------TSHKHSCKESDEPQPWSTIAKYKCQVEKALLEI----PGL 172
+ + +G SH E + Y E +LE GL
Sbjct: 115 ISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNF--YYDL-EDIMLEEVEKKEGL 171
Query: 173 NYTIVRPGVVYGKSDR--HNLAPRL-VMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRA 229
+++ RPG ++G S NL L V AI ++ G+ L+ G K+ +D
Sbjct: 172 TWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLI 231
Query: 230 IWHLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVG 289
H + E ++V + + L + FGV+ G + +
Sbjct: 232 AEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVE---CGEYEEGVD----LK 284
Query: 290 LTEEINDKHLTPWTQLCRKHNIDNTPLTPYIVPD----MLNLKPVHLDNAKLRDTGFE 343
L + + K W ++ R++ + T L + +L + K ++ GF
Sbjct: 285 LQDLMKGKE-PVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFL 341
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 89.8 bits (223), Expect = 9e-21
Identities = 57/359 (15%), Positives = 101/359 (28%), Gaps = 107/359 (29%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKV-----SPEIAWLNEKQKKIFKRP 55
MS +K ++I G CG +G L L +V S + P
Sbjct: 1 MSLSK--ILIAG-CGDLGLELARRLTAQG-----HEVTGLRRSAQ------------PMP 40
Query: 56 L-VEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAA--ETRPGQAEEIYREGIYKLS 112
V+ + ++ P T I + ++ C A E Y EG+
Sbjct: 41 AGVQTLIADVTRPDTLASIVHLRPE-------ILVYCVAASEYSDEHYRLSYVEGLRNT- 92
Query: 113 INCATAAARYGILKYVEISSGEICTSHKHS-CKESDEPQPWSTIAKYKCQVEKALLEIPG 171
+A + +SS + E P K + E L
Sbjct: 93 ---LSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALLA---A 146
Query: 172 LNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIW 231
+ TI+R +YG R + + +T + + ++ N +H D + I
Sbjct: 147 YSSTILRFSGIYGP-GRLRMIRQA----------QTPEQWPARNAWTNRIHRDDGAAFIA 195
Query: 232 HLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLT 291
+L+ + V +Y V D
Sbjct: 196 YLI-QQRSHAVPERLYIVTD---------------------------------------- 214
Query: 292 EEINDKHLTPW---TQLCRKHNIDNTPLTPYIVPDMLNLKPVHLDNAKLRDTGFEFQVP 347
++ L L + I P + K + NA+L +G++ P
Sbjct: 215 ----NQPLPVHDLLRWLADRQGI---AYPAGATPPVQGNKKL--SNARLLASGYQLIYP 264
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 85.6 bits (212), Expect = 1e-19
Identities = 39/254 (15%), Positives = 76/254 (29%), Gaps = 41/254 (16%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFI 60
M V ILG G GR L++ ++E + KV + R + F
Sbjct: 16 MQNKS--VFILGASGETGRVLLKEILEQG---LFSKV------------TLIGRRKLTFD 58
Query: 61 SGNL--IHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATA 118
++ + L+ ++ + C TR E + + A
Sbjct: 59 EEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAEL 118
Query: 119 AARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVR 178
A G + +SS + + K +VE + E+ Y++ R
Sbjct: 119 AKAGGCKHFNLLSSKGA------------DKSSNFLYLQVKGEVEAKVEELKFDRYSVFR 166
Query: 179 PGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELP 238
PGV+ + + +L V V + RA+ + +
Sbjct: 167 PGVLLCDRQESRPGE-----WLVRKFFGSLPDSWASGHS---VPVVTVVRAMLNNVVRPR 218
Query: 239 PAKVYREIYHVVDM 252
++ E+ +
Sbjct: 219 DKQM--ELLENKAI 230
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 82.4 bits (204), Expect = 1e-18
Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFI 60
M V++ G G G +L++ ++ L + + +K + + P ++
Sbjct: 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA---------RKALAEHPRLDNP 51
Query: 61 SGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETR--PGQAEEIYREGI-YKLSINCAT 117
G D + + C T G E + + L +
Sbjct: 52 VGP----------LAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRA--VDFDLPLAVGK 99
Query: 118 AAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIV 177
A G Y+ +S+ + + + K ++E+AL E TI
Sbjct: 100 RALEMGARHYLVVSA--LGAD----------AKSSIFYNRVKGELEQALQEQGWPQLTIA 147
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWH-LLSE 236
RP +++G + LA + + ++ GK + DL+RA+W L E
Sbjct: 148 RPSLLFGPREEFRLAE-----ILAAPI---ARILPGKYHG---IEACDLARALWRLALEE 196
Query: 237 LPPAKVY--REI 246
+ E+
Sbjct: 197 GKGVRFVESDEL 208
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 78.9 bits (195), Expect = 1e-16
Identities = 43/279 (15%), Positives = 79/279 (28%), Gaps = 47/279 (16%)
Query: 8 VVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
+LG G +G + + L +I Q + E ++
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIH--------RPSSQIQRLAYLEPECRVAEMLD 67
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETR--PGQAEEIYR---EGIYKLSINCATAAAR 121
+ E D VI A P + +E + A +
Sbjct: 68 HAGLERAL----RGLD----GVIFSAGYYPSRPRRWQEEVASALGQ----TNPFYAACLQ 115
Query: 122 YGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKY-------KCQVEKALLEI--PGL 172
+ + + + S H E + ++ K +++ E GL
Sbjct: 116 ARVPRILYVGSAYAMPRHPQG-LPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGL 174
Query: 173 NYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWH 232
I PG+V G+ D R++ GE G+ N + A+ R
Sbjct: 175 PVVIGIPGMVLGELDIGPTTGRVITAI---GNGEMTHYVAGQ---RNVIDAAEAGRG--L 226
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
L++ E Y + N DL + ++ G
Sbjct: 227 LMALERGRI--GERYLLTG-HNLEMADLTRRIAELLGQP 262
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 74.7 bits (184), Expect = 3e-15
Identities = 46/300 (15%), Positives = 96/300 (32%), Gaps = 49/300 (16%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVI---DKVSPEIAWLNEKQKKIFKRPLVEFISGNL 64
+++ G G +G LV +L E + + D V ++FI+ ++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR-------------DTGGIKFITLDV 48
Query: 65 IHPSTCELIFLNSADNSDLTWEYVINCAA------ETRPGQAEEIYREGIYKLSINCATA 118
+ + + + + + A E P A ++ G + N A
Sbjct: 49 SNRDEIDRAV------EKYSIDAIFHLAGILSAKGEKDPALAYKVNMNG----TYNILEA 98
Query: 119 AARYGILKYVEISSGEI--CTSHKHSCKESDEPQPWST--IAKYKC-QVEKALLEIPGLN 173
A ++ + K V S+ + + K+ +P + + K + + E GL+
Sbjct: 99 AKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLD 158
Query: 174 YTIVRPGVVYGKSDRHNLAPRLVMCAIYQYL--GETLQLFGGKSLPLNTVHVADLSRAIW 231
+R + I+ Y E + + + L +++ D +A+
Sbjct: 159 VRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALV 218
Query: 232 HLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFG---------VKHDYVGSVTASL 282
L V R Y+V T E L S + + + + SL
Sbjct: 219 DLYEADRDKLVLRNGYNVTAYTFTPSE-LYSKIKERIPEFEIEYKEDFRDKIAATWPESL 277
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 72.4 bits (178), Expect = 6e-15
Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 61/252 (24%)
Query: 8 VVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG 62
V+++G G V R L+ L ++R + E + ++ +R + +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVR-----NEE------QGPELRERGASDIVVA 72
Query: 63 NLIHPSTCELIFLNSADNSDLTWEYVINCA---AETRPGQAEEIYREGIYKLSINCATAA 119
NL F + D V+ A T + I G +I A
Sbjct: 73 NL--EEDFSHAF----ASID----AVVFAAGSGPHTGADKTILIDLWG----AIKTIQEA 118
Query: 120 ARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRP 179
+ GI +++ +SS + T P K + L L+YTIVRP
Sbjct: 119 EKRGIKRFIMVSS--VGTV-----DPDQGPMNMRHYLVAKRLADDELKR-SSLDYTIVRP 170
Query: 180 GVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPP 239
G + + + + S ++ D+++ I L+ +
Sbjct: 171 GPLSNEESTGKVT-----------------VSPHFSEITRSITRHDVAKVIAELVDQ--- 210
Query: 240 AKVYREIYHVVD 251
+ + V++
Sbjct: 211 QHTIGKTFEVLN 222
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 67.3 bits (165), Expect = 3e-13
Identities = 30/267 (11%), Positives = 86/267 (32%), Gaps = 68/267 (25%)
Query: 8 VVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG 62
+ I+G G VG++L++ L D R E ++ + V+ +
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGAR-----KVE---------QVPQYNNVKAVHF 48
Query: 63 NLIHPSTCELIFLNSADNSDLTW-----EYVINCAAETRPGQAEEIYREGIYKLSINCAT 117
++ ++ + +IN + + ++ G ++
Sbjct: 49 DV------------DWTPEEMAKQLHGMDAIINVSG-SGGKSLLKVDLYG----AVKLMQ 91
Query: 118 AAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIV 177
AA + + +++ +S+ I + K + L + L+YTI+
Sbjct: 92 AAEKAEVKRFILLST--IFSLQPEK-WIGAGFDALKDYYIAKHFADLYLTKETNLDYTII 148
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSEL 237
+PG + + + + + + + + D++ + +
Sbjct: 149 QPGALTEEEATGLID-----------INDEVS---------ASNTIGDVADT---IKELV 185
Query: 238 PPAKVYREIYHVVDMGNTCQEDLMSTL 264
++ + + G T ++ + +L
Sbjct: 186 MTDHSIGKVISMHN-GKTAIKEALESL 211
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 65.8 bits (161), Expect = 7e-13
Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 38/185 (20%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRP 55
M+ K + I G G G + V+ L+R + +
Sbjct: 1 MAVKK--IAIFGATGQTGLTTLAQAVQAGYEVTVLVR------------DSSRLPSEGPR 46
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
+ G+++ + + D VI + EG N
Sbjct: 47 PAHVVVGDVLQAADVDKTV----AGQD----AVIVLLGTRNDLSPTTVMSEGA----RNI 94
Query: 116 ATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYT 175
A +G+ K V +S + P + ++ K L E GL Y
Sbjct: 95 VAAMKAHGVDKVVACTSAFLLWDPTKV------PPRLQAVTDDHIRMHKVLRE-SGLKYV 147
Query: 176 IVRPG 180
V P
Sbjct: 148 AVMPP 152
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 66.4 bits (162), Expect = 1e-12
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 35/238 (14%)
Query: 2 SQNKPAVVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFI 60
S N P V++ G G G+ + + L E +D V + ++KI +
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-----QGKEKIGGE--ADVF 53
Query: 61 SGNLIHPSTCE--------LIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLS 112
G++ + L+ L SA + + + +
Sbjct: 54 IGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 113
Query: 113 INCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGL 172
N AA G+ V + S + ++ I +K + E+ L + G
Sbjct: 114 KNQIDAAKVAGVKHIVVVGS--MGGTNPDH---PLNKLGNGNILVWKRKAEQYLAD-SGT 167
Query: 173 NYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAI 230
YTI+R G + K +G+ +L + TV AD++
Sbjct: 168 PYTIIRAGGLLDKEGGVRELL----------VGKDDELLQTDT---KTVPRADVAEVC 212
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 62.0 bits (150), Expect = 2e-11
Identities = 40/255 (15%), Positives = 72/255 (28%), Gaps = 54/255 (21%)
Query: 8 VVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG 62
+ +LG G G +V ++R P+ K R +
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVR-----DPQ---------KAADRLGATVATL 48
Query: 63 NLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARY 122
E L+S D V++ + ++ + L +
Sbjct: 49 VKEPLVLTEAD-LDSVDA-------VVDALSVPWGSGRGYLHLDFATHL----VSLLRNS 96
Query: 123 GILKYVEISSGEICTSHKHSCKESDEP-----QPWSTIAKYKCQVEKALLEIPGLNYTIV 177
L + S + D P QPW A Y+ + L +N+ +
Sbjct: 97 DTLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGI 156
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNTVHVADLSRAIWHLLSE 236
P + + Y +TL + G+S + +++ AI L E
Sbjct: 157 SPSEAFPSGPATS----------YVAGKDTLLVGEDGQS----HITTGNMALAILDQL-E 201
Query: 237 LPPAKVYREIYHVVD 251
P R+ V D
Sbjct: 202 HP--TAIRDRIVVRD 214
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 60.8 bits (147), Expect = 5e-11
Identities = 41/251 (16%), Positives = 78/251 (31%), Gaps = 56/251 (22%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND------LLRVIDKVSPEIAWLNEKQKKIFKR 54
M + ILG G + + L L+ R + P +E+
Sbjct: 4 MYXY---ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHER------- 53
Query: 55 PLVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSIN 114
V I G+ +P E N+++ V A E+ A +
Sbjct: 54 --VTVIEGSFQNPGXLEQAV----TNAEV----VFVGAMESGSDMA-------------S 90
Query: 115 CATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNY 174
A +R I + + +S + + ++ + + + Q +L LNY
Sbjct: 91 IVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARN-VLRESNLNY 149
Query: 175 TIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLL 234
TI+R +Y + + Y+ + E Q V + +AI+ +L
Sbjct: 150 TILRLTWLYNDPEXTD----------YELIPEGAQFNDA------QVSREAVVKAIFDIL 193
Query: 235 SELPPAKVYRE 245
+R
Sbjct: 194 HAADETPFHRT 204
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 60.8 bits (148), Expect = 9e-11
Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 43/218 (19%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEN-DLLRVIDKVSPEIAWLNEKQKKIFKRPLVEF 59
M+ + +++ G G +GR + E L ++LR+ D + A P E
Sbjct: 1 MAMKR--LLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEEC 47
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYR---EGIYKLSINCA 116
+ +L + + D +++ + E+I + G+Y N
Sbjct: 48 VQCDLADANAVNAMV-AGCD-------GIVHLGGISVEKPFEQILQGNIIGLY----NLY 95
Query: 117 TAAARYGILKYVEISSGEICTSHKHS--CKESDEPQPWSTIAKYKCQVE---KALLEIPG 171
AA +G + V SS + + +P KC E + + G
Sbjct: 96 EAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFG 155
Query: 172 LNYTIVRPGVVYGK-SDRHNLAP--------RLVMCAI 200
+VR G + ++ L+ L+
Sbjct: 156 QETALVRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVF 193
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 59.5 bits (145), Expect = 3e-10
Identities = 50/259 (19%), Positives = 83/259 (32%), Gaps = 46/259 (17%)
Query: 8 VVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSP-EIAWLNEKQKKIFKRPLVEFISGNLI 65
+V+ GG GF+G +LV+ LVE + V+D +S ++N E +L
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPS---------AELHVRDLK 53
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETRPGQA----EEIYREGIYKLSINCATAAAR 121
S I + V + AA + + E + + N A +
Sbjct: 54 DYSWGAGIKG----------DVVFHFAANPEVRLSTTEPIVHFNENVVA-TFNVLEWARQ 102
Query: 122 YGILKYVEISS----GEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLNY 174
G+ V SS G+ + E + +P S K E + G+
Sbjct: 103 TGVRTVVFASSSTVYGD---ADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRC 159
Query: 175 TIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNT---VHVADLSRAI 230
VR V G RH + +M L++ G G ++V D A
Sbjct: 160 LAVRYANVVGPRLRHGVIYDFIMKLRRN--PNVLEVLGDGT----QRKSYLYVRDAVEAT 213
Query: 231 WHLLSELPPAKVYREIYHV 249
+ +V
Sbjct: 214 LAAWKKFEEMDAPFLALNV 232
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 59.1 bits (143), Expect = 3e-10
Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 57/277 (20%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKV-----SPEIAWLNEKQKKIFKRP 55
M+ ++ G G+ R L L ++ +P+ Q + +
Sbjct: 4 MTGT---LLSFG-HGYTARVLSRALAPQG-----WRIIGTSRNPD-------QMEAIRAS 47
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
E + PS L+ +++ A P + +
Sbjct: 48 GAEPLLWPGEEPS------LDGVT-------HLLISTA---PDSGGDPVLAALGD----- 86
Query: 116 ATAAARYGILKYVEISSGEICTSHKHS-CKESDEPQPWSTIAKYKCQVEKALLEIPGLNY 174
AA +S+ + H + E+ P + +++ E+ +P L
Sbjct: 87 QIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPL 146
Query: 175 TIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLL 234
+ R +YG R + ++ + +HV D+++ + +
Sbjct: 147 HVFRLAGIYGP-GRG---------PFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASM 196
Query: 235 SELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
+ P +Y+V D +D+++ ++ G+
Sbjct: 197 ARPDPG----AVYNVCDDEPVPPQDVIAYAAELQGLP 229
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 58.3 bits (142), Expect = 9e-10
Identities = 50/252 (19%), Positives = 90/252 (35%), Gaps = 44/252 (17%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSP-EIAWLNEKQKKIFKRPLVEFISGNLIH 66
+V+ GG GF+G ++V+ L E++ + VID +S ++NE + +L
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEA---------ARLVKADLAA 54
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAET--RPGQAE--EIYREGIYKLSINCATAAARY 122
+ + A+ V + AA R G EIYR + + A +
Sbjct: 55 DDIKDYLK--GAE-------EVWHIAANPDVRIGAENPDEIYRNNVLA-TYRLLEAMRKA 104
Query: 123 GILKYVEISS----GEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLNYT 175
G+ + V S+ GE + E P S K E + +
Sbjct: 105 GVSRIVFTSTSTVYGE---AKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAW 161
Query: 176 IVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNT---VHVADLSRAIW 231
I R V G+ H + +M E L++ G G+ ++++D A+
Sbjct: 162 IYRFANVIGRRSTHGVIYDFIMKLKRN--PEELEILGNGE----QNKSYIYISDCVDAML 215
Query: 232 HLLSELPPAKVY 243
L ++
Sbjct: 216 FGLRGDERVNIF 227
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 57.3 bits (139), Expect = 1e-09
Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 41/211 (19%)
Query: 8 VVILGGCGFVGRNLVEHLVEN-DLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
+++ G G VG + HL +R+ D V E ++ +L
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLG-----------AAEAHEEIVACDLAD 53
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYR---EGIYKLSINCATAAARYG 123
+ D +I+ + +I + G Y N AA G
Sbjct: 54 AQAVHDLV-KDCD-------GIIHLGGVSVERPWNDILQANIIGAY----NLYEAARNLG 101
Query: 124 ILKYVEISSGEICTSHKHSCK--ESDEPQPWSTIAKYKCQVEKALL---EIPGLNYTIVR 178
+ V SS + + + +P S KC E + +R
Sbjct: 102 KPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIR 161
Query: 179 PGVVYGK-SDRHNLAP--------RLVMCAI 200
G + K D +A RL+ A
Sbjct: 162 IGSCFPKPKDARMMATWLSVDDFMRLMKRAF 192
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 57.6 bits (139), Expect = 1e-09
Identities = 37/277 (13%), Positives = 89/277 (32%), Gaps = 45/277 (16%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRP 55
M ++ ++++G G++GR++ + ++ L+R + + + + FK
Sbjct: 1 MG-SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVR---ESTASSNSEKAQLLESFKAS 56
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
+ G++ ++ N + VI+ + I +
Sbjct: 57 GANIVHGSIDDHASLVEAVKNV--------DVVISTVGSLQIESQVNIIK---------- 98
Query: 116 ATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYT 175
A G +K S + H +P ++ + K +V +A +E G+ YT
Sbjct: 99 --AIKEVGTVKRFFPSEFGNDVDNVH------AVEPAKSVFEVKAKVRRA-IEAEGIPYT 149
Query: 176 IVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLS 235
V G L + + + + G + + V D+ +
Sbjct: 150 YVSSNCFAG-----YFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAV- 203
Query: 236 ELPPAKVYREIYHVVDMGNT-CQEDLMSTLTDIFGVK 271
+ P + ++ NT +L++
Sbjct: 204 DDPRTL--NKTLYLRLPANTLSLNELVALWEKKIDKT 238
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 57.2 bits (139), Expect = 2e-09
Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 53/247 (21%)
Query: 86 EYVINCAAETRPGQAEEIYREGIYKLSINC------ATAAARYGILKYVEIS-----SGE 134
+++CAAE RP E + + +N A AA G + IS G
Sbjct: 62 HVIVHCAAERRPDVVEN-QPDAASQ--LNVDASGNLAKEAAAVGA-FLIYISSDYVFDGT 117
Query: 135 ICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGK--SDRHNLA 192
+E D P P + K K EKA+LE L ++R ++YG+ +
Sbjct: 118 -----NPPYREEDIPAPLNLYGKTKLDGEKAVLEN-NLGAAVLRIPILYGEVEKLEESAV 171
Query: 193 PRLVMCAIYQYLGETLQLFGGKSLPLNTVH--------VADLSRAIWHLLSELPPAKVYR 244
VM + N H V D++ L + +
Sbjct: 172 --TVM----------FDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIK 219
Query: 245 EIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASL---------CQLDLVGLTEEIN 295
+H + ++ + D F + ++ +T S QLD L E +
Sbjct: 220 GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKL-ETLG 278
Query: 296 DKHLTPW 302
TP+
Sbjct: 279 IGQRTPF 285
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 57.6 bits (139), Expect = 2e-09
Identities = 44/271 (16%), Positives = 83/271 (30%), Gaps = 55/271 (20%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHP 67
+VI G GFVG+NL L + + R +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHHIFE----------------VHR----QTKEEELES 42
Query: 68 STCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARYGILKY 127
L AD ++++ A RP + ++ + G + R
Sbjct: 43 ------ALLKAD-------FIVHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPA 88
Query: 128 VEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLNYTIVRPGVVYG 184
+ +SS S + + + K Q E+ L E G I R ++G
Sbjct: 89 ILLSS-------------SIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFG 135
Query: 185 KSDRHNLAPRLVMCAIYQYL-GETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPAKVY 243
K + N ++ Y+ E +Q+ L +V D+ I + P +
Sbjct: 136 KWCKPNYNS-VIATFCYKIARNEEIQVNDRNV-ELTLNYVDDIVAEIKRAIEGTP--TIE 191
Query: 244 REIYHVVDMGNTCQEDLMSTLTDIFGVKHDY 274
+ V ++ +++ L + D
Sbjct: 192 NGVPTVPNVFKVTLGEIVDLLYKFKQSRLDR 222
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 57.3 bits (139), Expect = 2e-09
Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 28/243 (11%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL---LRVIDKVSPEIAWLNEKQKKI-----FKRPLVEF 59
++I GG GFVG NL H EN + V+DK + N + + E
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGI-YKLSINCATA 118
I+ ++ +P + D Y+ + AA + + Y+ +N
Sbjct: 73 IAADINNPLDLRRLEKLHFD-------YLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEI 125
Query: 119 AARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEK-ALLEIPGLNYTIV 177
A K + SS + + K P + K +++ L +
Sbjct: 126 ARSKKA-KVIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSNDNVQVGL 184
Query: 178 RPGVVYGKSDRHNLAPRLVMC-AIYQYL-GETLQLFG-GKSLPLNT---VHVADLSRAIW 231
R VYG + + ++ + + ++LF G+ V++ D+ +A
Sbjct: 185 RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGE----QLRDFVYIEDVIQANV 240
Query: 232 HLL 234
+
Sbjct: 241 KAM 243
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 56.8 bits (138), Expect = 3e-09
Identities = 36/248 (14%), Positives = 70/248 (28%), Gaps = 42/248 (16%)
Query: 8 VVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
+ + GG GF+G+ +VE + + ++ + E+ +
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-----------GNKAINDYEYRVSDYTL 53
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAET---RPGQAEEIYREGIYKLSINCATAAARYG 123
LN D V++ AA + N A
Sbjct: 54 EDLINQ--LNDVD-------AVVHLAATRGSQGKISEFHDNEIL----TQNLYDACYENN 100
Query: 124 ILKYVEISSGEI-CTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLNYTIVRP 179
I V S+ E + P P K E GL +R
Sbjct: 101 ISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRF 160
Query: 180 GVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNT---VHVADLSRAIWHLLS 235
+YG ++++N + GE L L ++ D ++++ + L
Sbjct: 161 AHLYGFNEKNNYMINRFFRQAFH--GEQLTLHANSV----AKREFLYAKDAAKSVIYALK 214
Query: 236 ELPPAKVY 243
+ + +
Sbjct: 215 QEKVSGTF 222
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 55.1 bits (133), Expect = 5e-09
Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRP 55
M + K +V++G GFVG L+ + ++R +K+ E
Sbjct: 1 MEKVKK-IVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-------------NE 46
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
++ ++ +D VI+ +IY E I K+ +
Sbjct: 47 HLKVKKADVSSLDE----VCEVCKGAD----AVISAFNPGWNN--PDIYDETI-KVYLTI 95
Query: 116 ATAAARYGILKYVEISS-GEICTSHKHSCKESDE-PQPWSTIAKYKCQVEKA-LLEIPGL 172
+ G+ +++ + G + + +S E P+ K + L++ +
Sbjct: 96 IDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEI 155
Query: 173 NYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNT-----VHVADLS 227
++ P R G + ++ + V D +
Sbjct: 156 DWVFFSPAADMRPGVRTGRY-----------------RLGKDDMIVDIVGNSHISVEDYA 198
Query: 228 RAIWHLLSELPPAKVYREIYHV 249
A+ L E P K ++E + +
Sbjct: 199 AAMIDEL-EHP--KHHQERFTI 217
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 53.8 bits (129), Expect = 1e-08
Identities = 26/255 (10%), Positives = 66/255 (25%), Gaps = 56/255 (21%)
Query: 8 VVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG 62
+ I+G G G ++E ++R K++ + +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------------HKDINILQK 49
Query: 63 NLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARY 122
++ + + A E + + L +
Sbjct: 50 DI------------FDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHL----ISVLNGT 93
Query: 123 GILKYVEISSGEICTSHKHSCKESDE----PQPWSTIAKYKCQVEKA-LLEIPGLNYTIV 177
+ + + + + P+ A+ + + + ++T +
Sbjct: 94 VSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYI 153
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNTVHVADLSRAIWHLLSE 236
P ++ +R YQ + L G S + + D + A +L E
Sbjct: 154 SPSAMFEPGERTGD---------YQIGKDHLLFGSDGNS----FISMEDYAIA---VLDE 197
Query: 237 LPPAKVYREIYHVVD 251
+ E + V
Sbjct: 198 IERPNHLNEHFTVAG 212
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 54.2 bits (131), Expect = 2e-08
Identities = 50/293 (17%), Positives = 98/293 (33%), Gaps = 41/293 (13%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVE-NDLLRVIDKVS----PEIAWLNEKQKKIFKRP 55
+ +I G GF+G NL+E L++ + + +D + + + + +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK-QWS 81
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETR-------PGQAEEIYREGI 108
+FI G++ + C +YV++ AA P + +G
Sbjct: 82 NFKFIQGDIRNLDDCNNACAGV--------DYVLHQAALGSVPRSINDPITSNATNIDG- 132
Query: 109 YKLSINCATAAARYGILKYVEISSGEICTSHKHS-CKESDEPQPWSTIAKYKCQVEKALL 167
+N AA + + +S H E +P S A K E
Sbjct: 133 ---FLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYAD 189
Query: 168 ---EIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCA-IYQYL-GETLQLFG-GKSLPLNT- 220
G + +R V+G+ N A V+ + G+ + + G G+ +
Sbjct: 190 VFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGE----TSR 245
Query: 221 --VHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
++ + +A LL+ ++Y++ G T L L D
Sbjct: 246 DFCYIENTVQAN--LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAEN 296
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 53.3 bits (129), Expect = 3e-08
Identities = 53/256 (20%), Positives = 92/256 (35%), Gaps = 58/256 (22%)
Query: 8 VVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSPEIAW-LNEKQKKIFKRPLVEFISGNLI 65
V++ GG GF+G ++VE L+ + V+D ++ + + V F +L
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKG---------VPFFRVDLR 53
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAE-------TRPGQAEEIYREGIYKLSINCATA 118
E F + +V + AA+ P + + +N A
Sbjct: 54 DKEGVERAF------REFRPTHVSHQAAQASVKVSVEDPVLD---FEVNLLG-GLNLLEA 103
Query: 119 AARYGILKYVEISS-----GEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIP 170
+YG+ K V S+ GE+ + +E+ P+P S A K E L +
Sbjct: 104 CRQYGVEKLVFASTGGAIYGEVPEGER--AEETWPPRPKSPYAASKAAFEHYLSVYGQSY 161
Query: 171 GLNYTIVRPGVVYGKSDRHN----LAPRLVMCAIYQYLGETLQLFGGKSLPLNT------ 220
GL + +R G VYG + + + G + L+ K
Sbjct: 162 GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLK---GLPVTLYARK---TPGDEGCVR 215
Query: 221 --VHVADLSRAIWHLL 234
V+V D++ A H L
Sbjct: 216 DYVYVGDVAEA--HAL 229
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 53.0 bits (127), Expect = 4e-08
Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 41/272 (15%)
Query: 5 KPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPLVEF 59
+ ++ILG G +GR++V ++ L+R ++ E+ ++ V
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVR--KTITAANPETKEELIDNYQSLGVIL 59
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAA 119
+ G++ T + VI A +I + A
Sbjct: 60 LEGDINDHETLVKAIKQV--------DIVICAAGRLLIEDQVKIIK------------AI 99
Query: 120 ARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRP 179
G +K + D +P + + K + + +E G+ YT +
Sbjct: 100 KEAGNVKKF------FPSEFGLDVDRHDAVEPVRQVFEEKASIRRV-IEAEGVPYTYLCC 152
Query: 180 GVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPP 239
G L + + + G ++ V AD+ ++ P
Sbjct: 153 HAFTG-----YFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAND--P 205
Query: 240 AKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
+ + ++ + Q ++++ G
Sbjct: 206 NTLNKAVHIRLPKNYLTQNEVIALWEKKIGKT 237
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 53.1 bits (127), Expect = 5e-08
Identities = 33/281 (11%), Positives = 76/281 (27%), Gaps = 44/281 (15%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRP 55
+ K V+I G GF+G+ + ++ L R + + +
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKA-----LEDK 60
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
+ G + E I + + V++ +
Sbjct: 61 GAIIVYGLINEQEAMEKIL------KEHEIDIVVSTVGGESILDQIAL------------ 102
Query: 116 ATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYT 175
A G +K S + +P + + K +V + +E G+ +T
Sbjct: 103 VKAMKAVGTIKRFLPSEFGHDVNRAD------PVEPGLNMYREKRRVRQL-VEESGIPFT 155
Query: 176 IVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLS 235
+ + + + + Q++G ++ V D+ + +
Sbjct: 156 YICCNSIAS-----WPYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVD 210
Query: 236 ELPPAKVYREIYHVVDMGNT-CQEDLMSTLTDIFGVKHDYV 275
++ + H N +L S G V
Sbjct: 211 DVRTL---NKSVHFRPSCNCLNINELASVWEKKIGRTLPRV 248
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 52.6 bits (126), Expect = 6e-08
Identities = 42/278 (15%), Positives = 83/278 (29%), Gaps = 42/278 (15%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRP 55
M + K V+I+GG G++G+ +V + L R + + + FK+
Sbjct: 1 MDK-KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID----KVQMLLYFKQL 55
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINC 115
+ I +L + VI+ A +
Sbjct: 56 GAKLIEASLDDHQRLVDALKQV--------DVVISALAGGVLSHHILEQ--------LKL 99
Query: 116 ATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYT 175
A G +K S E QP S K +V +A +E + YT
Sbjct: 100 VEAIKEAGNIKRFLPS--EFGMDPDI---MEHALQPGSITFIDKRKVRRA-IEAASIPYT 153
Query: 176 IVRPGVVYGKSDRHNLAPRLVMCAIYQYL-GETLQLFGGKSLPLNTVHVADLSRAIWHLL 234
V + G A L + + + ++G ++ V D+ +
Sbjct: 154 YVSSNMFAG-----YFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI 208
Query: 235 SELPPAKVYREIYHVVDMGNTC-QEDLMSTLTDIFGVK 271
+ P + ++ N Q++++ +
Sbjct: 209 -DDPQTL--NKTMYIRPPMNILSQKEVIQIWERLSEQN 243
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 51.6 bits (124), Expect = 1e-07
Identities = 41/262 (15%), Positives = 74/262 (28%), Gaps = 49/262 (18%)
Query: 8 VVILGGCGFVGRNLVEHLVE--------NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEF 59
+ I+G G VGR L + LV+ + +ID PE V+
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF--------SGAVDA 68
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAA------ETRPGQAEEIYREGIYKLSI 113
+ +L P E + D + + AA E + I +G L
Sbjct: 69 RAADLSAPGEAEKLVEARPD-------VIFHLAAIVSGEAELDFDKGYRINLDGTRYLFD 121
Query: 114 NCATAAARYGILKYVEISS-----GEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALL- 167
A + G V +S G + + P ++ K E L
Sbjct: 122 AIRIANGKDGYKPRVVFTSSIAVFGA---PLPYPIPDEFHTTPLTSYGTQKAICELLLSD 178
Query: 168 --EIPGLNYTIVR-PGVVYGKSDRH----NLAPRLVMCAIYQYLGETLQLFGGKSLPLNT 220
+ +R P + + ++ + +G+ L +S+
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPL---VGQEAVLPVPESIRHWH 235
Query: 221 VHVADLSRAIWHLLSELPPAKV 242
+ H + KV
Sbjct: 236 ASPRSAVGFLIHGA-MIDVEKV 256
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 50.2 bits (120), Expect = 2e-07
Identities = 33/247 (13%), Positives = 67/247 (27%), Gaps = 60/247 (24%)
Query: 8 VVILGGCGFVGRNLVEHLVEND------LLRVIDKVSPEIAWLNEKQKKIFKRPLVEFIS 61
V+ILG G + R+++ L + R + + I
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFAR------------QPAKIHKPYPTNSQIIM 73
Query: 62 GNLIHPSTCELIFLNSADNSDLTWEYVINCAA-ETRPGQAEEIYREGIYKLSINCATAAA 120
G++++ + + D+ V E QA + A
Sbjct: 74 GDVLNHAALKQAM----QGQDI----VYANLTGEDLDIQANSV------------IAAMK 113
Query: 121 RYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPG 180
+ + + + S I E + K + A+ GL YTI+RP
Sbjct: 114 ACDVKRLIFVLSLGIYDEVPGKFVEWNNAVI-GEPLKPFRRAADAIEA-SGLEYTILRPA 171
Query: 181 VVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPA 240
+ + + + + V ++ I ++ + P
Sbjct: 172 WLTD-----------------EDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDK--PE 212
Query: 241 KVYREIY 247
K E
Sbjct: 213 KHIGENI 219
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 50.8 bits (122), Expect = 2e-07
Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 57/271 (21%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVI--DKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
V+++GG GFVG NLV+ L+E + +V D + + ++ + P V F ++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLL------SAEKINVPDHPAVRFSETSIT 88
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAET-------RPGQAEEIYREGIYKLSINCATA 118
+ + +YV + A P E ++
Sbjct: 89 DDALLASLQDEY--------DYVFHLATYHGNQSSIHDPLADHENNTLT----TLKLYER 136
Query: 119 AARY-GILKYVEISS----GEICTSHKHSCKESDEPQPWSTIAKY---KCQVE---KALL 167
+ + K V ++ E + +E+D + + Y K E
Sbjct: 137 LKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYH 196
Query: 168 EIPGLNYTIVRPGVVYG----------KSDRHNLAPRLVMCAIYQYL-GETLQLFG-GKS 215
+ L R VYG + + + IY+ L G L L G
Sbjct: 197 KQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGV- 255
Query: 216 LPLNT---VHVADLSRAIWHLLSELPPAKVY 243
T + V D++ + ++ P VY
Sbjct: 256 ---ATRDFIFVEDVANGLIACAADGTPGGVY 283
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 48.6 bits (116), Expect = 1e-06
Identities = 45/315 (14%), Positives = 95/315 (30%), Gaps = 73/315 (23%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKVS-------------PEIAWLNEKQKKIFK 53
V+++GG G+ G HL + + + ++D + IA ++++ +
Sbjct: 14 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73
Query: 54 R--PLVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAE-------TRPGQAEEIY 104
+E G++ F + V++ + +A
Sbjct: 74 LTGKSIELYVGDICDFEFLAESF------KSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQ 127
Query: 105 REGIY--------------KLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQ 150
+ + + YG I E + H+ + P
Sbjct: 128 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG---TPNIDIEEGYITITHNGRTDTLPY 184
Query: 151 PWSTIAKY---KCQVEK---ALLEIPGLNYTIVRPGVVYG-KSDRHNLAPRLVMCAIYQY 203
P + Y K + G+ T + GVVYG K+D + L Y
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 204 LGET------LQLFGGKSLPL-----NT---VHVADLSRAIWHLLSELPPAKVYR----- 244
+ T +Q G L + T + + D + + ++ A +R
Sbjct: 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 245 -EIYHVVDMGNTCQE 258
E + V ++ + +
Sbjct: 305 TEQFSVNELASLVTK 319
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 48.4 bits (116), Expect = 1e-06
Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 56/284 (19%)
Query: 8 VVILGGCGFVGRNLVEHLVE-NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
V I G CG +G ++ E L+E D + ID + +++ + P + F+ G++
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFA------TGRREHLKDHPNLTFVEGSIAD 77
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCA------TAAA 120
+ + DL + V++ AA ++ + NC AA
Sbjct: 78 HALVNQLI------GDLQPDAVVHTAA-----SYKDP-DDWYNDTLTNCVGGSNVVQAAK 125
Query: 121 RYGILKYVEISSGEI--CTSHKHSCKESDEPQP-WSTIAKYKCQVEKALLEIPGLNYTIV 177
+ + ++V + + + P S+ A K E LE GL++
Sbjct: 126 KNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANED-YLEYSGLDFVTF 184
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNT-----VHVADLSRAIWH 232
R V G + P +L GK + V V DL+RA
Sbjct: 185 RLANVVGPRNVSGPLPIF-----------FQRLSEGKKCFVTKARRDFVFVKDLARATVR 233
Query: 233 LLSELPPAKVYREIYHVVDMGNTCQEDLM---STLTDIFGVKHD 273
+ + YH + + + + +
Sbjct: 234 AVDGVGH-----GAYHF---SSGTDVAIKELYDAVVEAMALPSY 269
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 47.2 bits (112), Expect = 3e-06
Identities = 38/278 (13%), Positives = 81/278 (29%), Gaps = 52/278 (18%)
Query: 1 MSQN--KPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFK 53
M +N K ++I GG G++G ++V+ ++ R + + F+
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDE--------FQ 56
Query: 54 RPLVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSI 113
+ G L + + VI+ A +
Sbjct: 57 SLGAIIVKGELDEHEKLVELMKKV--------DVVISALAFPQILDQ------------F 96
Query: 114 NCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLN 173
A G +K S + + P+ + + K + +A +E +
Sbjct: 97 KILEAIKVAGNIKRFLPSDFGVEEDRIN------ALPPFEALIERKRMIRRA-IEEANIP 149
Query: 174 YTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHL 233
YT V + L P + + ++G + D+ +
Sbjct: 150 YTYVSANCFASYFINYLLRPYDP--------KDEITVYGTGEAKFAMNYEQDIGLYTIKV 201
Query: 234 LSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
++ P + R + + Q +L+S G K
Sbjct: 202 ATD--PRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 47.5 bits (113), Expect = 4e-06
Identities = 50/304 (16%), Positives = 100/304 (32%), Gaps = 62/304 (20%)
Query: 8 VVILGGCGFVGRNLVEHLV-ENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
V+ILG GF+G +L + ++ D + ++ + K + F G++
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQ------TDRLGDLVKHERMHFFEGDITI 80
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAA-------ETRPGQAEEIYREGIYKLSINCATAA 119
+ D ++ A +P + E+ E ++ +A
Sbjct: 81 NKEWVEYHVKKCD-------VILPLVAIATPATYVKQPLRVFELDFEA----NLPIVRSA 129
Query: 120 ARYGILKYVEISSGEI-CTSHKHSCKESDEPQPWSTIAK----YKCQVEKALLEI----- 169
+YG V S+ E+ + I K Y C K L++
Sbjct: 130 VKYGK-HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACS--KQLMDRVIWGY 186
Query: 170 --PGLNYTIVRPGVVYG-----KSDRHNLAPRLVMCAIYQYL-GETLQLFGG----KSLP 217
GLN+T+ RP G + R+V + + GE + L G ++
Sbjct: 187 GMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAF- 245
Query: 218 LNTVHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQE----DLMSTLTDIFGVKHD 273
+V D A+ ++ + ++GN +L + + ++ +
Sbjct: 246 ---TYVDDGISALMKIIE----NSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPE 298
Query: 274 YVGS 277
Y S
Sbjct: 299 YADS 302
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 47.0 bits (112), Expect = 4e-06
Identities = 52/298 (17%), Positives = 94/298 (31%), Gaps = 79/298 (26%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVI--DKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
V+ILG GF+G +L E L+ D V D S I+ + P F+ G++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-------RFLNHPHFHFVEGDIS 55
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAA-------ETRPGQAEEIYREGIYKLSINCATA 118
S + D V+ A P + E+ E ++
Sbjct: 56 IHSEWIEYHVKKCD-------VVLPLVAIATPIEYTRNPLRVFELDFEE----NLRIIRY 104
Query: 119 AARYGILKYVEISSGEI---CTSHKHSCKESDEPQP---WSTI--------AKYKCQVEK 164
+Y + + S+ E+ C+ + I Y K
Sbjct: 105 CVKYRK-RIIFPSTSEVYGMCSDK---------YFDEDHSNLIVGPVNKPRWIYSVS--K 152
Query: 165 ALLE--------IPGLNYTIVRPGVVYG-----KSDRHNLAPRLVMCAIYQYL-GETLQL 210
LL+ GL +T+ RP G + + R + I + G ++L
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKL 212
Query: 211 FGG----KSLPLNTVHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQEDLMSTL 264
G + + D A++ ++ R ++++GN E + L
Sbjct: 213 IDGGKQKRCF----TDIRDGIEALYRIIE----NAGNRCDGEIINIGNPENEASIEEL 262
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 46.9 bits (112), Expect = 5e-06
Identities = 43/286 (15%), Positives = 82/286 (28%), Gaps = 42/286 (14%)
Query: 8 VVILGGCGFVGRNLVEHLVE---NDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNL 64
++I+G CG +G L + L + + + D +N F N
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGP----------FEVVNA 54
Query: 65 IHPSTCELIFLNSADNSDLTWEYVINCAA------ETRPGQAEEIYREGIYKLSINCATA 118
+ + E + + AA E P A ++ +
Sbjct: 55 LDFNQIEHLVEVHKI------TDIYLMAALLSATAEKNPAFAWDLNMNS----LFHVLNL 104
Query: 119 AARYGILKYVEISSGEI--CTSHKHSCKESDEPQPWSTIAKYKCQVEKALL---EIPGLN 173
A I K SS + T+ K + + +P + K E+ I G++
Sbjct: 105 AKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVD 164
Query: 174 YTIVRPGVVYGKSDRHN-----LAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSR 228
+R + S A + AI + + F + +++ D
Sbjct: 165 VRSIRYPGLISWSTPPGGGTTDYAVDIFYKAI---ADKKYECFLSSETKMPMMYMDDAID 221
Query: 229 AIWHLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDY 274
A +++ Y++ M T E I Y
Sbjct: 222 ATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITY 267
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 46.7 bits (111), Expect = 5e-06
Identities = 36/191 (18%), Positives = 58/191 (30%), Gaps = 51/191 (26%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVE-NDLLRVI--DKVSPEIAWLNEKQKKIFKRPLV 57
M+Q K + ++G G G +L+ +R +++ P V
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL-------IAEELQAIPNV 53
Query: 58 EFISGNLIHPST--------CELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIY 109
G L++ L F+N T +EI G
Sbjct: 54 TLFQGPLLNNVPLMDTLFEGAHLAFIN------------------TTSQAGDEI-AIG-- 92
Query: 110 KLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEI 169
+ A AA R G +++ SS P P + K VE + ++
Sbjct: 93 ---KDLADAAKRAGTIQHYIYSSMP--------DHSLYGPWPAVPMWAPKFTVENYVRQL 141
Query: 170 PGLNYTIVRPG 180
GL T V G
Sbjct: 142 -GLPSTFVYAG 151
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 46.5 bits (110), Expect = 6e-06
Identities = 36/275 (13%), Positives = 80/275 (29%), Gaps = 42/275 (15%)
Query: 2 SQNKPAVVILGGCGFVGRNLVEHLVEND-----LLRVIDKVSPEIAWLNEKQKKIFKRPL 56
+ ++I GG G++G+ +V + R + S + + ++ F+
Sbjct: 1 GSHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSV---QLREEFRSMG 57
Query: 57 VEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCA 116
V I G + + + VI+ I
Sbjct: 58 VTIIEGEMEEHEKMVSVLKQV--------DIVISALPFPMISSQIHIIN----------- 98
Query: 117 TAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTI 176
A G +K S P+ ++ + K + +A +E L YT
Sbjct: 99 -AIKAAGNIKRFLPSDFGCEEDRIKP------LPPFESVLEKKRIIRRA-IEAAALPYTY 150
Query: 177 VRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSE 236
V L+ + + + + ++G + D+++ + +
Sbjct: 151 VSANCFGA-----YFVNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACD 205
Query: 237 LPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVK 271
P R + + Q +L+S G+
Sbjct: 206 --PRCCNRIVIYRPPKNIISQNELISLWEAKSGLS 238
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 44.5 bits (106), Expect = 2e-05
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 86 EYVINCAA-------ETRPGQAEEIYREGIYKLSINCATAAARYGILKYVEIS-----SG 133
+ +IN AA E +A +I E + + A V IS G
Sbjct: 59 DVIINAAAMTDVDKCEIEKEKAYKINAEAVRHI----VRAGKVIDS-YIVHISTDYVFDG 113
Query: 134 EICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGK 185
E K + KE D P P + K E L+ + I+R ++
Sbjct: 114 E-----KGNYKEEDIPNPINYYGLSKLLGETFALQD---DSLIIRTSGIFRN 157
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 43.9 bits (104), Expect = 4e-05
Identities = 50/287 (17%), Positives = 85/287 (29%), Gaps = 60/287 (20%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVENDLLRVI----DKVSPEIAWLNEKQKKIFKRPL 56
M +K VV+ GG G G ++ L+E+ +V + L +
Sbjct: 2 MV-DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL--------RLQG 52
Query: 57 VEFISGNLIHPST-------CELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIY 109
E + G+ F+ T ++ +E
Sbjct: 53 AEVVQGDQDDQVIMELALNGAYATFIV------------------TNYWESCSQEQE--V 92
Query: 110 KLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEI 169
K A A R G+ V S E + K+ + + K +VE+ +I
Sbjct: 93 KQGKLLADLARRLGLHYVV-YSGLE-------NIKKLTAGRLAAAHFDGKGEVEEYFRDI 144
Query: 170 PGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRA 229
G+ T VR + NL + L L G P++ + V+DL
Sbjct: 145 -GVPMTSVRLPCYF-----ENLLSHFLPQKAPDGKSYLLSLPTGDV-PMDGMSVSDLGPV 197
Query: 230 IWHLLSELPPAKVYREIYHVVDMGNTC-QEDLMSTLTDIFGVKHDYV 275
+ LL P K + + E+ + LT
Sbjct: 198 VLSLLKM--PEKYVGQNIGLS--TCRHTAEEYAALLTKHTRKVVHDA 240
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 43.7 bits (104), Expect = 4e-05
Identities = 45/260 (17%), Positives = 83/260 (31%), Gaps = 45/260 (17%)
Query: 1 MSQNKPA--VVILGGCGFVGRNLVEHLVEN-DLLRVIDKVSPEIAWLNEKQKKIFKRPLV 57
M +N ++I GG GF+G +L LV + + + V+D + E K ++P++
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVL 60
Query: 58 EFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAET--RPGQAE-EIYREGIYKLSIN 114
E +L V + A+ + Y + + +
Sbjct: 61 ELEERDLSDV------------------RLVYHLASHKSVPRSFKQPLDYLDNV-DSGRH 101
Query: 115 CATAAARYGILKYVEISSGEI-CTSHKHSCKESDEPQPWS--TIAKYK----CQVEKALL 167
G+ K V S+ E+ + E P S +K +
Sbjct: 102 LLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS 161
Query: 168 EIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG-GKSLPLNT---VHV 223
P IVR VYG +R + + + L + G G+ ++
Sbjct: 162 VAP--EVGIVRFFNVYGPGERPDALVPRLCANLLT--RNELPVEGDGE----QRRDFTYI 213
Query: 224 ADLSRAIWHLLSELPPAKVY 243
D+ + L+ P V
Sbjct: 214 TDVVDKLV-ALANRPLPSVV 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 6e-05
Identities = 70/437 (16%), Positives = 119/437 (27%), Gaps = 149/437 (34%)
Query: 15 GFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHPSTCELIF 74
G+V LVE +V++ L E F+ ++ GN IH +L
Sbjct: 66 GYVSS-LVEPSKVGQFDQVLNLC------LTE-----FEN---CYLEGNDIHALAAKL-- 108
Query: 75 LNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAAR-YGIL-------K 126
L D + + + +I R ++ L A+ I
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 127 YVEISSGE---------------ICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLE--- 168
Y E E I S + + + + + L
Sbjct: 169 YFE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 169 IPGLNYTIVRP------GVVYGKSDRHNLAPRLVMCAIYQYL-GETLQLFGGKSLPLNTV 221
P +Y + P GV+ LA +V + + GE G T
Sbjct: 225 TPDKDYLLSIPISCPLIGVI-------QLAHYVVTAKLLGFTPGELRSYLKGA-----TG 272
Query: 222 HVADL--SRAI-----W-----------HLL-------------SELPPAKVYREIYH-- 248
H L + AI W +L + LPP+ + + +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 249 --------VVDMGNTC-QEDLMSTLTDIFGVKHDYVG--------SVT---ASLCQLDLV 288
+ ++ Q+ + T + + K + V+ SL L+L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 289 --------GLTEEINDKHLTPWTQLCRKHNIDNT--PLT-----PYIVPDMLNLKP-VHL 332
GL D+ P+++ RK N P+ L P L
Sbjct: 393 LRKAKAPSGL-----DQSRIPFSE--RKLKFSNRFLPVASPFHSHL-------LVPASDL 438
Query: 333 DNAKLRDTGFEFQVPQL 349
N L F +
Sbjct: 439 INKDLVKNNVSFNAKDI 455
Score = 35.0 bits (80), Expect = 0.038
Identities = 46/296 (15%), Positives = 84/296 (28%), Gaps = 110/296 (37%)
Query: 22 VEHLVENDLLRVIDKVS---PE-----IAWLNEKQKKIFKRPLVEFISGNLIHPSTCELI 73
+ +L + + ++K + P I+ +N + LV +SG P + L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA------KNLV--VSG---PPQS--LY 387
Query: 74 FLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAAARYGILKYVEISSG 133
LN + A + Q+ + E KL + +++ +
Sbjct: 388 GLNLT---------LRKAKAPSGLDQSRIPFSE--RKLKFS----------NRFLPV--- 423
Query: 134 EICTSHKHS-CKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVY----GKSDR 188
S HS + K ++IP VY G R
Sbjct: 424 ---ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----------VYDTFDGSDLR 469
Query: 189 H---NLAPRLVMCAIYQYLGETLQLFGGKSLPLNTVHVADLSRAIWHLLSELPPAKVYRE 245
+++ R+V C I LP+ W ++
Sbjct: 470 VLSGSISERIVDCII--------------RLPVK-----------WETTTQFKAT----- 499
Query: 246 IYHVVDMG---NTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTEEINDKH 298
H++D G + L D G V + A LD + ++ K
Sbjct: 500 --HILDFGPGGASGLGVLTHRNKDGTG-----VRVIVAGT--LD-INPDDDYGFKQ 545
Score = 33.1 bits (75), Expect = 0.18
Identities = 53/267 (19%), Positives = 84/267 (31%), Gaps = 89/267 (33%)
Query: 121 RYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPG 180
Y + + I G + KE +E Y + EK LL + T
Sbjct: 1687 NYSAMIFETIVDG--KLKTEKIFKEINE-----HSTSYTFRSEKGLL-----SAT----- 1729
Query: 181 VVYGKSDRHNLAPRLVM--CAIYQYLGE-----TLQLFGGKSL----PLNTVHVAD-LSR 228
P L + A ++ L F G SL L +AD +S
Sbjct: 1730 --------QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL--ASLADVMS- 1778
Query: 229 AIWHLLSELPPAKV--YREIYHVVDMGNTCQE-----DLMSTLTDIFGVKHDYVGSVTAS 281
+ L +V YR G T Q +L + + + G V AS
Sbjct: 1779 -----IESL--VEVVFYR--------GMTMQVAVPRDELGRSNYGMIAIN---PGRVAAS 1820
Query: 282 LCQLDLVGLTEEINDKHLTPWTQLCRKHNIDNTPLTPYIV----------PDMLN-LKPV 330
Q L + E + + T W L N N Y+ ++LN +K
Sbjct: 1821 FSQEALQYVVERVGKR--TGW--LVEIVN-YNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 331 HLDNAKLRDTGFEFQVPQLSRDKLEEE 357
+D +L+ + LS +++E
Sbjct: 1876 KIDIIELQKS--------LSLEEVEGH 1894
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 43.3 bits (103), Expect = 6e-05
Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 59/248 (23%)
Query: 7 AVVILGGCGFVGRNLVEHLVENDL-LRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
++I GG G +G NL+EH + + VID + K++ + + I G++
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFA------TGKREVLPPVAGLSVIEGSVT 75
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETRPGQA-EEIYREGIYKLSINCATAAARYGI 124
E F +V++ AA + E + SIN A AA++ G+
Sbjct: 76 DAGLLERAF------DSFKPTHVVHSAAAYKDPDDWAEDAATNVQG-SINVAKAASKAGV 128
Query: 125 LKYVEISS----GE-----ICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYT 175
+ + + G I P+++ K E L + +
Sbjct: 129 KRLLNFQTALCYGRPATVPI--------PIDSPTAPFTSYGISKTAGEA-FLMMSDVPVV 179
Query: 176 IVRPGVVYGKSDRHNLAPRLVMCAIYQYLGE----TLQLFGGKSLPLNT-----VHVADL 226
+R V G PR +G +L G+ + + ++D
Sbjct: 180 SLRLANVTG--------PR-------LAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDF 224
Query: 227 SRAIWHLL 234
L
Sbjct: 225 LAI--ADL 230
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 43.1 bits (102), Expect = 8e-05
Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 22/140 (15%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLV-ENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEF 59
S+N + I G GF+ ++ L E + D E + + EF
Sbjct: 26 PSENL-KISITGAGGFIASHIARRLKHEGHYVIASDWKKNE----HMTEDMFCD----EF 76
Query: 60 ISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLS----INC 115
+L C + ++V N AA+ + I + N
Sbjct: 77 HLVDLRVMENCLKVTEGV--------DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM 128
Query: 116 ATAAARYGILKYVEISSGEI 135
AA GI ++ SS I
Sbjct: 129 IEAARINGIKRFFYASSACI 148
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 42.6 bits (101), Expect = 9e-05
Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 43/247 (17%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL--LRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+++ GG GF+G N+V+ L + + + V+D + ++N I + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIA----DYMDKEDFL 57
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETR-PGQAEEIYREGIYKLSINCATAAARYGI 124
F + E + + A + + + Y+ S I
Sbjct: 58 IQIMAGEEFGDV--------EAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI 109
Query: 125 LKYVEISS----GEICTSHKHSCKESDEPQPWSTIAKYKCQVE---KALLEIPGLNYTIV 177
++ SS G + + +P + K + + +L
Sbjct: 110 -PFLYASSAATYGG---RTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGF 165
Query: 178 RPGVVYGKSDRHNLAPRLVMCAIY-QYL-GETLQLFGGKSLPLNT--------VHVADLS 227
R VYG + H + V + Q GE+ +LF G V+V D++
Sbjct: 166 RYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG-------SENFKRDFVYVGDVA 218
Query: 228 RAIWHLL 234
L
Sbjct: 219 DVNLWFL 225
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 42.7 bits (101), Expect = 1e-04
Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 22/215 (10%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL--LRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+++ GG GF+G N+V+ L + + + V+D + ++N I + +
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIA----DYMDKEDFL 104
Query: 66 HPSTCELIFLNSADNSDLTWEYVINCAAETR-PGQAEEIYREGIYKLSINCATAAARYGI 124
F + E + + A + + + Y+ S I
Sbjct: 105 IQIMAGEEFGDV--------EAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI 156
Query: 125 LKYVEISSGEICTSHKHSCKESDEP-QPWSTIAKYKCQVE---KALLEIPGLNYTIVRPG 180
++ SS ES E +P + K + + +L R
Sbjct: 157 -PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYF 215
Query: 181 VVYGKSDRHNLAPRLVMCAIYQYL--GETLQLFGG 213
VYG + H + V + L GE+ +LF G
Sbjct: 216 NVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG 250
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 42.6 bits (101), Expect = 1e-04
Identities = 53/301 (17%), Positives = 103/301 (34%), Gaps = 57/301 (18%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVE-NDLLRVIDKVS----PEIAWLNEKQKKIFKRP 55
+ + +I G GF+G NL+E L++ N ++ +D S + + +
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK-TLVSTEQWS 79
Query: 56 LVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAE-------TRPGQAEEIYREGI 108
FI G++ +TCE + ++V++ AA P G
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGV--------DHVLHQAALGSVPRSIVDPITTNATNITG- 130
Query: 109 YKLSINCATAAARYGILKYVEISS----GEICTSHKHSCKESDEPQPWSTIAKYKCQVE- 163
+N AA + + +S G+ E + P S A K E
Sbjct: 131 ---FLNILHAAKNAQVQSFTYAASSSTYGD---HPALPKVEENIGNPLSPYAVTKYVNEI 184
Query: 164 --KALLEIPGLNYTIVRPGVVYGKSDRHNLAPRLVMC----AIYQYLGETLQLFG-GKSL 216
+ G +R V+G+ N A V+ A+ + G+ + + G G++
Sbjct: 185 YAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLK--GDDVYINGDGET- 241
Query: 217 PLNT---VHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQEDLM---STLTDIFGV 270
+ ++ ++ + +LS L IY+V + L + D +
Sbjct: 242 ---SRDFCYIDNVIQMN--ILSALAKDSAKDNIYNV---AVGDRTTLNELSGYIYDELNL 293
Query: 271 K 271
Sbjct: 294 I 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 53/383 (13%), Positives = 116/383 (30%), Gaps = 133/383 (34%)
Query: 2 SQNKPAVVILGGCGFVGRNLVEH---LVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVE 58
++ K L +L H L +++ ++ K +L+ + + + V
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK------YLDCRPQDL--PREVL 323
Query: 59 FISGNLIHPSTCELIFLNSADNSDLTWEYV--INCAAETR----------PGQAEEIYRE 106
+P +I + D TW+ +NC T P + +++
Sbjct: 324 -----TTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 107 -GIYKLSINCATAAARYGIL--KYVEISSGEI-CTSHKHSCKESDEPQPWSTI----AKY 158
++ S + T ++ ++ + HK+S E + +I +
Sbjct: 378 LSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 159 KCQVE------KALLEIPGLNYTIVRPGVVYGKSDRHNLAPRLVMCAIYQYLGETLQLFG 212
K ++E +++++ +Y I + D +L P + Y ++G
Sbjct: 436 KVKLENEYALHRSIVD----HYNIPK------TFDSDDLIPPYLDQYFYSHIG------- 478
Query: 213 GKSLPLNTVHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQEDLMSTLTDIF---- 268
+H + N + M+ +F
Sbjct: 479 ----------------------------------HH---LKNIEHPERMTLFRMVFLDFR 501
Query: 269 ----GVKHD-----YVGSVTASLCQLDLVGLTEEINDKHLTPWTQLCRKHNIDNTPLTPY 319
++HD GS+ +L QL + + DN P
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY------------------KPYICDNDPKYER 543
Query: 320 IVPDMLNLKP---VHLDNAKLRD 339
+V +L+ P +L +K D
Sbjct: 544 LVNAILDFLPKIEENLICSKYTD 566
Score = 36.0 bits (82), Expect = 0.022
Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 59/187 (31%)
Query: 201 YQYLGETLQLFGGKSLP-LNTVHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQED 259
YQY + L +F + + V D+ ++I LS+ EI H++ +
Sbjct: 16 YQY-KDILSVFEDAFVDNFDCKDVQDMPKSI---LSK-------EEIDHIIMSKDAVSGT 64
Query: 260 LMSTLTDIFGVK-----HDYVGSVTASLCQLDLVGLTEEINDKHLTPW-------TQLCR 307
L L K +V V +++ L I + P Q R
Sbjct: 65 LR--LFWTLLSKQEEMVQKFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 308 KHNIDNTPLTPYIVP----------DMLNLKP-----VH---------LDNAKLRDTG-- 341
+N DN Y V +L L+P + +
Sbjct: 119 LYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 342 --FEFQV 346
+F++
Sbjct: 178 CKMDFKI 184
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 42.6 bits (101), Expect = 1e-04
Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 44/190 (23%)
Query: 86 EYVINCAA-------ETRPGQAEEIYREGIYKLSINCATAAARYGILKYVEIS-----SG 133
+ ++N AA E+ P A+ + + + A AA G V S G
Sbjct: 56 DVIVNAAAHTAVDKAESEPELAQLLNATSVEAI----AKAANETGA-WVVHYSTDYVFPG 110
Query: 134 EICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGKSDRHNLAP 193
+ +E+D P + K K EKAL + + I R VY +N A
Sbjct: 111 ----TGDIPWQETDATSPLNVYGKTKLAGEKALQDN-CPKHLIFRTSWVYA-GKGNNFA- 163
Query: 194 RLVMCAIYQYLGETLQLFGGKSLPLNTVH--------VADLSRAIWHLLSELPPAKVYRE 245
M L+L + L+ ++ L+ H +
Sbjct: 164 -KTM----------LRLAKERQ-TLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAG 211
Query: 246 IYHVVDMGNT 255
+YH+V G T
Sbjct: 212 LYHLVAGGTT 221
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 39.4 bits (93), Expect = 0.001
Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 22/112 (19%)
Query: 86 EYVINCAA-------ETRPGQAEEIYREGIYKLSINCATAAARYGILKYVEIS-----SG 133
+I+CAA E A I G N A A+ G K V IS G
Sbjct: 58 HIIIHCAAYTKVDQAEKERDLAYVINAIGAR----NVAVASQLVGA-KLVYISTDYVFQG 112
Query: 134 EICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGK 185
+ E P P + K E+ + E+ Y IVR +YGK
Sbjct: 113 D----RPEGYDEFHNPAPINIYGASKYAGEQFVKEL-HNKYFIVRTSWLYGK 159
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 39.0 bits (92), Expect = 0.001
Identities = 47/190 (24%), Positives = 62/190 (32%), Gaps = 50/190 (26%)
Query: 86 EYVINCAA-------ETRPGQAEEIYREGIYKLSINCATAAARYGILKYVEIS-----SG 133
VINCAA E + A +I G N A AA G + V+IS G
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPK----NLAAAAYSVGA-EIVQISTDYVFDG 119
Query: 134 EICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRPGVVYGKSDRHNLAP 193
E K E DE P S K K + E + + Y IVR +YG +N
Sbjct: 120 E----AKEPITEFDEVNPQSAYGKTKLEGENFVKAL-NPKYYIVRTAWLYGD--GNNFV- 171
Query: 194 RLVMCAIYQYLGETLQLFGGKSLPLNTVH--------VADLSRAIWHLLSELPPAKVYRE 245
M + L L VH DL+R + ++ E
Sbjct: 172 -KTM----------INLGKTHD-ELKVVHDQVGTPTSTVDLARVVLKVIDEKN-----YG 214
Query: 246 IYHVVDMGNT 255
+H G
Sbjct: 215 TFHCTCKGIC 224
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 38.0 bits (88), Expect = 0.004
Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 68/301 (22%)
Query: 5 KPAVVIL-GGCGFVGRNLVEHLVENDLLRVIDKV-------SPEIAWLNEKQKKIFKRPL 56
+ V+L G GF+GR LV L+ L V ++ S E A + +K F
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRR--LDVDGRLICLVRAESDEDAR--RRLEKTFDSGD 127
Query: 57 --------------VEFISGNLIHPSTCELIF-LNSADNSDLTWE--YVINCAAETR--- 96
+E ++G+ P L+ L +++ AA
Sbjct: 128 PELLRHFKELAADRLEVVAGDKSEPD-----LGLDQPMWRRLAETVDLIVDSAAMVNAFP 182
Query: 97 PGQAEEIYREGIYKLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIA 156
+ G A + + +S+ ++ + + S D +
Sbjct: 183 YHELFGPNVAGT----AELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPT 238
Query: 157 K---------Y---KCQVEKALL---EIPGLNYTIVRPGVVYGKSDR------HNLAPRL 195
+ Y K E L ++ L + R G++ + + R+
Sbjct: 239 RTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRM 298
Query: 196 VMCAIY-----QYLGETLQLFGGKSLPLNTVHVADLSRAIWHL-LSELPPAKVYREIYHV 249
V+ + + E + + + V ++ AI L + YHV
Sbjct: 299 VLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHV 358
Query: 250 V 250
+
Sbjct: 359 M 359
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 36.9 bits (86), Expect = 0.007
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 50/181 (27%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKV-SPEIAWLNEKQKKIFKRPLVEFISGNLIH 66
+++ G G +G ++ + N + V + E R V + +
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV-------PDDWRGKVSVRQLDYFN 55
Query: 67 PST-------CELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATAA 119
+ + + + + R + E N AA
Sbjct: 56 QESMVEAFKGMDTVVFIPSIIHP----------SFKRIPEVE------------NLVYAA 93
Query: 120 ARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVRP 179
+ G+ + I +D+ ++ Y + L G++YT VR
Sbjct: 94 KQSGVAHIIFIGYY------------ADQHNNPFHMSPYFGYASRLLSTS-GIDYTYVRM 140
Query: 180 G 180
Sbjct: 141 A 141
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 35.4 bits (82), Expect = 0.028
Identities = 59/302 (19%), Positives = 100/302 (33%), Gaps = 63/302 (20%)
Query: 3 QNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISG 62
+ + V+ILG GF+G +L E L+ D V + ++ + P F+ G
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYG-----LDIGSDAISRFLNHPHFHFVEG 367
Query: 63 NL-IHPSTCELIFLNSADNSDLTWEYVINCAA-------ETRPGQAEEIYREGIYKLSIN 114
++ IH E D+ V+ A P + E+ E ++
Sbjct: 368 DISIHSEWIE----YHVKKCDV----VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRY 419
Query: 115 CATAAARYGILKYVEISSGEI---CTSHKHSCKESD------EPQPWSTIAKYKCQVEKA 165
C R + S+ E+ C+ S+ W Y K
Sbjct: 420 CVKYRKR-----IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWI----YSVS--KQ 468
Query: 166 LLE--------IPGLNYTIVRPGVVYG-KSDRHNLA----PRLVMCAIYQYL-GETLQLF 211
LL+ GL +T+ RP G + D N A R + I + G ++L
Sbjct: 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI 528
Query: 212 GGKSLPLNTVHVADLSRAIWHLLSELPPAKVYREIYHVVDMGNTCQE----DLMSTLTDI 267
G + D A++ ++ + EI ++ GN E +L L
Sbjct: 529 DGGKQKRCFTDIRDGIEALYRIIEN-AGNRCDGEIINI---GNPENEASIEELGEMLLAS 584
Query: 268 FG 269
F
Sbjct: 585 FE 586
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 32.6 bits (75), Expect = 0.088
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 1 MSQNKPA--VVILGGCGFVGRNLVEHLVE--NDLLRVIDKVSPEIAWLNEKQKKIFKRPL 56
MS+ + + +VI G CG +G + + ++ V+DK ++
Sbjct: 13 MSKKQKSKYIVIFG-CGRLGSLIANLASSSGHSVV-VVDKNE-------YAFHRLNSEFS 63
Query: 57 VEFISGNLIHPST 69
+ G+ T
Sbjct: 64 GFTVVGDAAEFET 76
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 32.9 bits (76), Expect = 0.16
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND 29
MS+ P V+I G G G NL + D
Sbjct: 1 MSERAPLVII--GTGLAGYNLAREWRKLD 27
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 32.6 bits (75), Expect = 0.17
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 8 VVILGGCGFVGRNLVEHLVEN-DLLRVIDKVS 38
++I GGCGF+G NL + L V D +S
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLS 35
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 31.6 bits (72), Expect = 0.38
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 8 VVILGGCGFVGRNLVEHLVEN 28
V I G G VGR L L
Sbjct: 150 VAITGSRGLVGRALTAQLQTG 170
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 31.4 bits (72), Expect = 0.40
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKL 111
P T IF +A+ + W Y + C + EIY E I L
Sbjct: 112 PMTLSHIFKWTANLKERGWNYEMEC-------EYIEIYNETILDL 149
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 31.3 bits (72), Expect = 0.48
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVI--DK 36
++I GG GF+G +V H+++N V+ DK
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 31.2 bits (71), Expect = 0.53
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND 29
M +++ ++I GG GFVG +L + L+ +
Sbjct: 23 MEKDRKRILITGGAGFVGSHLTDKLMMDG 51
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 31.3 bits (70), Expect = 0.61
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 192 APRLVMCAIYQYLGETLQLFGGK---SLPLNTVHVADLSRAIWHLLSELPPA 240
R+ L L GG+ L+ + D+ W ++ L
Sbjct: 438 VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 29.6 bits (67), Expect = 0.76
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 19/73 (26%)
Query: 44 LNEKQKKIFKRPLVEFISGNLIHPSTCELIFLNSADNSDLT-WEYVINCAAETRPGQAEE 102
L ++ ++ K + E +S L SAD+ L+ W I GQ
Sbjct: 26 LLDELERGQKGNVSEGVSF-----------GLESADDITLSNWSCTI-------FGQPGT 67
Query: 103 IYREGIYKLSINC 115
++ IY L+I C
Sbjct: 68 VFENRIYSLTIFC 80
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.4 bits (66), Expect = 0.76
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHP 67
+ ++G G +G+ + L + V +A + + R V +
Sbjct: 8 ICVVG-AGKIGQMIAALLKTSSNYSVT------VADHDLAALAVLNRMGVATKQVDAKDE 60
Query: 68 STCE 71
+
Sbjct: 61 AGLA 64
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 30.3 bits (69), Expect = 0.86
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKL 111
PST IF W+Y +NC + EIY E I L
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNC-------EFIEIYNENIVDL 148
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 30.3 bits (69), Expect = 0.88
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 65 IHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKL 111
I PST IF W+Y +N + EIY E I L
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNA-------EFIEIYNENIVDL 204
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 30.6 bits (70), Expect = 0.95
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 1 MSQNKPAVVILGGCGFVGRN--LVEHLVENDLLRV-------------IDKVSPEIAWLN 45
+ ++ AV LGG G +G+N V+ +++++ + ID V P+ +L
Sbjct: 4 VKNDQTAVFALGGLGEIGKNTYAVQF--QDEIVLIDAGIKFPEDELLGIDYVIPDYTYLV 61
Query: 46 EKQKKI 51
+ + KI
Sbjct: 62 KNEDKI 67
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 30.3 bits (69), Expect = 0.97
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 65 IHPSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKL 111
+ P T +L+F + +L WEY I EIY E +Y L
Sbjct: 165 VIPRTVDLLFDSIRGYRNLGWEYEIKA-------TFLEIYNEVLYDL 204
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 29.9 bits (68), Expect = 1.2
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 67 PSTCELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKL 111
P +F + + S W Y EIY E + L
Sbjct: 148 PRALRHLFSVAQELSGQGWTYSFVA-------SYVEIYNETVRDL 185
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 29.8 bits (68), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEN 28
MSQ K +++ GG GF+G N V ++ N
Sbjct: 1 MSQFK-NIIVTGGAGFIGSNFVHYVYNN 27
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P;
2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A*
3t3n_A*
Length = 562
Score = 29.8 bits (68), Expect = 1.4
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 3 QNKPAVVILGGCGFVGRN--LVEHLVENDLLRV-------------IDKVSPEIAWLNEK 47
Q+ ++ LGG G +G+N + +++ + +D + P + +L E
Sbjct: 14 QDHVEIIPLGGMGEIGKNITVFRF--RDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEH 71
Query: 48 QKKI 51
+ KI
Sbjct: 72 RHKI 75
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 29.4 bits (67), Expect = 1.8
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEN 28
M K +++ GG GF+G N + +++E
Sbjct: 1 MHSMK--LLVTGGMGFIGSNFIRYILEK 26
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.2 bits (66), Expect = 1.9
Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 52/182 (28%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKV-SPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+ + G G +G +++HL++ ++I V + E A VE G+
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA-------STLADQGVEVRHGDYN 55
Query: 66 HPST-------CELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATA 118
P + + S + D Q N A
Sbjct: 56 QPESLQKAFAGVSKLLFISGPHYD----------NTLLIVQHA------------NVVKA 93
Query: 119 AARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVR 178
A G+ K++ T + + + +A E A+ + YT +R
Sbjct: 94 ARDAGV-KHI------AYTGYAFA------EESIIPLAHVHLATEYAIRTT-NIPYTFLR 139
Query: 179 PG 180
Sbjct: 140 NA 141
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 2.3
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 54/182 (29%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKV-SPEIAWLNEKQKKIFKRPLVEFISGNLI 65
+ I G G +G ++E L++ +++ V +P A + + +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-------QALAAQGITVRQADYG 54
Query: 66 HPST-------CELIFLNSADNSDLTWEYVINCAAETRPGQAEEIYREGIYKLSINCATA 118
+ E + L S+ R Q + A
Sbjct: 55 DEAALTSALQGVEKLLLISSS------------EVGQRAPQHRNV------------INA 90
Query: 119 AARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKYKCQVEKALLEIPGLNYTIVR 178
A G+ S TS +A + EK L + G+ YT++R
Sbjct: 91 AKAAGVKFIAYTSLLHADTSP-------------LGLADEHIETEKMLADS-GIVYTLLR 136
Query: 179 PG 180
G
Sbjct: 137 NG 138
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 27.9 bits (63), Expect = 2.6
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 8 VVILGGCGFVGRNLVEHLVE--NDLLRVIDKVSPEIAWLNEK 47
++I G G VG L + L E +D++ +ID + +
Sbjct: 7 IIIAG-IGRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAE 46
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 28.6 bits (65), Expect = 2.9
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 8 VVILGGCGFVGRNLVEHLVEN 28
+++ GG GF+G N V +++++
Sbjct: 27 ILVTGGAGFIGSNFVHYMLQS 47
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 28.6 bits (65), Expect = 3.3
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 12 GGCGFVGRNLVEHLVENDLLRVID 35
GG GF+G + V L+ V
Sbjct: 7 GGAGFIGSHFVRQLLAGAYPDVPA 30
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.4 bits (63), Expect = 3.7
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 8 VVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLNEKQKKI 51
V+ILG G +GR + L + + + D + + + E +
Sbjct: 19 VLILG-AGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPL 61
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 28.3 bits (62), Expect = 4.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 1 MSQNKPAVVILGGCGFVGRNLVEHLVEND 29
M+ V++ G GFV R ++ L ++
Sbjct: 1 MATKS---VLMLGSGFVTRPTLDVLTDSG 26
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 28.3 bits (64), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDKVSPEIAWLNEK 47
++ILG G VG L E+LV + + ++DK + L +K
Sbjct: 6 IIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDK 45
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 27.9 bits (63), Expect = 4.5
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 8 VVILGGCGFVGRNLVEHLVENDL-LRVIDK 36
V+I+GG L ++ + +I+K
Sbjct: 3 VIIIGG-ETTAYYLARSMLSRKYGVVIINK 31
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.0 bits (63), Expect = 5.3
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 322 PDMLNLKPVHLDNAKLRDTGFEFQVPQLSRDKLEE 356
D + + + KL GF F + +EE
Sbjct: 293 GDFPPKSKLIISSEKLVKEGFSF------KYGIEE 321
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.9 bits (61), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 9 VILGGCGFVGRNLVEHLVENDLLRVI 34
V+L G GFV + +++ L ND + V
Sbjct: 26 VLLLGSGFVAQPVIDTLAANDDINVT 51
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.6 bits (62), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 326 NLKPVHLDNAKLRDTGFEFQVP 347
NLK V + KL D GFEF+
Sbjct: 286 NLKSVCFSSKKLTDLGFEFKYS 307
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 26.9 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 53 KRPLVEFISGNLIHPSTCELIFLNSADNSDLT-WEYVINCAAETRPGQAEEIYREGIYKL 111
R L E G L +D+ +T W I + + IY L
Sbjct: 9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHS-------NHENRIYSL 61
Query: 112 SINC 115
SI+C
Sbjct: 62 SIDC 65
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 27.5 bits (60), Expect = 7.0
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 7/121 (5%)
Query: 39 PEIAWLNEKQKKIFKRPLVEFISGNLIHPSTCELIFLNSADNSDLTWEYVINCAAETRPG 98
+ W +Q + + P+ + N I L F +D T Y C
Sbjct: 48 LTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRP-TLLND-TGNYT--CMLRNTTY 103
Query: 99 QAEEIYREGIYKLSINCATAAARYGILKYVEISSGEICTSHKHSCKESDEPQPWSTIAKY 158
++ + + + +C + + + K + T +P TI Y
Sbjct: 104 CSKVAFPLEVVQ-KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP--TITWY 160
Query: 159 K 159
Sbjct: 161 M 161
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 27.6 bits (62), Expect = 7.2
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 317 TPYIVPDMLNLKPVHLDNAKLRDTGFEFQVP 347
T + ++ + L+ KL D GF+F+
Sbjct: 274 TVDELKEIKGARLPDLNTKKLVDAGFDFKYT 304
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 27.5 bits (60), Expect = 8.2
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 3 QNKPAVVILGGCGFVGRNLVEHLVENDLLRVIDKVSPEIAWLN-EKQKKIFKR 54
KP + L G G +G ++V + + V ++ K +
Sbjct: 20 TGKPIRIGLIGAGEMGTDIVTQVARMQGIEVG-----ALSARRLPNTFKAIRT 67
>2x78_A Integrase; viral protein, DNA-directed DNA polyme
nucleotidyltransferase, DNA integration, aspartyl
protease, recombination, transferase; 2.00A {Human
spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Length = 200
Score = 26.9 bits (60), Expect = 9.6
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 237 LPPAKVYREIYHVVDMGNTCQEDLMSTLTDIFGVKHDYVGSVTASLCQLDLVGLTEEI-- 294
LPP++ Y + VVD M+ T ++ K + SL L + + I
Sbjct: 24 LPPSQGYLYVLVVVDG--------MTGFTWLYPTKAPSTSATVKSLNVLTSIAIPRVIHS 75
Query: 295 -NDKHLT--PWTQLCRKHNIDNTPLTPY 319
T + + ++ I TPY
Sbjct: 76 DQGAAFTSSTFAEWAKERGIHLEFSTPY 103
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A
{Tribolium castaneum} PDB: 3du5_A 3du6_A
Length = 596
Score = 27.2 bits (59), Expect = 10.0
Identities = 5/53 (9%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 33 VIDKVSPEIAWLNEKQKKIFKRPLVEFISGNLIHPSTCELIFLNSADNSDLTW 85
++ ++ P+ + K F + + + ++ + + D + W
Sbjct: 51 LLQEIIPKSYFGTTTNLKRFYKVVEKILTQSS-FECIHLSVLHKCYDYDAIPW 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,593,509
Number of extensions: 337123
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 120
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)