BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18115
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/362 (60%), Positives = 269/362 (74%), Gaps = 1/362 (0%)
Query: 5 NDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64
+D+ +E+TIAEDLVVTKYKM +I NRVL+ ++E S +CE D ++ +ET K
Sbjct: 3 GEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGK 62
Query: 65 CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVA 124
FKK K+MKKGIAFPT ISVNNC+CHFSPL+SD D ILK D+VKIDLG HVDGFIA VA
Sbjct: 63 IFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVA 122
Query: 125 HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPL 184
HT VV A+ + G+KA+ I AAH +EAALRL+KPGN +T+ K+ F C P+
Sbjct: 123 HTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPI 182
Query: 185 EGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDT 244
EGMLSHQLKQ IDGEKTIIQNP+D QKK+HEK FE +EVYA+DVLVS+G+G ++
Sbjct: 183 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQ 242
Query: 245 RVTIYKK-TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLI 303
R TIYK+ + Y LK+K SRAFF EV++++ MPF LR FE+E +AR+G+ EC KH+L+
Sbjct: 243 RTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELL 302
Query: 304 EPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSSD 363
+PF VLYEK GE VAQFKFTVLLMPNGP RIT PFE D YKS + V D ELKALL SS
Sbjct: 303 QPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSA 362
Query: 364 LR 365
R
Sbjct: 363 SR 364
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/362 (60%), Positives = 269/362 (74%), Gaps = 1/362 (0%)
Query: 5 NDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64
+D+ +E+TIAEDLVVTKYKM +I NRVL+ ++E S +CE D ++ +ET K
Sbjct: 10 GEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGK 69
Query: 65 CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVA 124
FKK K+MKKGIAFPT ISVNNC+CHFSPL+SD D ILK D+VKIDLG HVDGFIA VA
Sbjct: 70 IFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVA 129
Query: 125 HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPL 184
HT VV A+ + G+KA+ I AAH +EAALRL+KPGN +T+ K+ F C P+
Sbjct: 130 HTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPI 189
Query: 185 EGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDT 244
EGMLSHQLKQ IDGEKTIIQNP+D QKK+HEK FE +EVYA+DVLVS+G+G ++
Sbjct: 190 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQ 249
Query: 245 RVTIYKK-TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLI 303
R TIYK+ + Y LK+K SRAFF EV++++ MPF LR FE+E +AR+G+ EC KH+L+
Sbjct: 250 RTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELL 309
Query: 304 EPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSSD 363
+PF VLYEK GE VAQFKFTVLLMPNGP RIT PFE D YKS + V D ELKALL SS
Sbjct: 310 QPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSA 369
Query: 364 LR 365
R
Sbjct: 370 SR 371
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/353 (61%), Positives = 265/353 (75%), Gaps = 1/353 (0%)
Query: 10 EEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKI 69
EE+TIAEDLVVTKYKM +I NRVL+ ++E S +CE D ++ +ET K FKK
Sbjct: 1 EEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKE 60
Query: 70 KDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVV 129
K+MKKGIAFPT ISVNNC+CHFSPL+SD D ILK D+VKIDLG HVDGFIA VAHT V+
Sbjct: 61 KEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVI 120
Query: 130 GAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLS 189
G A+ + G+KA+ I AAH +EAALRL+KPGN +T+ K+ F C P+EGMLS
Sbjct: 121 GVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLS 180
Query: 190 HQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIY 249
HQLKQ IDGEKTIIQNP+D QKK+HEK FE +EVYA+DVLVS+G+G ++ R TIY
Sbjct: 181 HQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIY 240
Query: 250 KK-TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQV 308
K+ + Y LK+K SRAFF EV++++ MPF LR FE+E +AR+G+ EC KH+L++PF V
Sbjct: 241 KRDPSKQYGLKMKTSRAFFSEVERRFDAMPFALRAFEDEKKARMGVVECAKHELLQPFNV 300
Query: 309 LYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLS 361
LYE+ GE VAQFKFTVLLMPNGP RIT PFE D YKS + V D ELKALL S
Sbjct: 301 LYEREGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQS 353
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 28/365 (7%)
Query: 19 VVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAF 78
V+TKYK A++I +VL V + CV A DICE D+L+ +E SK ++ K KG +
Sbjct: 25 VLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRD-KKTNKGFSH 83
Query: 79 PTCISVNNCICHFSPLRSDPDLI---LKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
PT +S I ++PLRSD ++ + +KI LGA +DG+ +V TIV A
Sbjct: 84 PTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIVCDTIVAKNANDP 143
Query: 136 KCM-GKKANAILAAHYASEAALRLMKP------GND-------------TYLITDTVQKI 175
+ G++A+ LA +YA+E LRLM P G D I+ ++K+
Sbjct: 144 DVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPPSQAKISSLLEKV 203
Query: 176 CKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTG 235
K ++C +E S + +I+G+K II +P ++ K E E +V+ ++V S G
Sbjct: 204 AKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEG---VPEVGDVWGVEVGCSLG 260
Query: 236 DGVGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGIN 295
G ++ + R T++++T Y LK SR + EVQKK+ PF+LR E+E A+ G+
Sbjct: 261 SGKVKQFEQRATLHRRTNNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVI 320
Query: 296 ECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIP-FESDHYKSTLSVSDPE 354
ECV+ + ++V +K V + T+ + NG RI G P ++ +K+ + D E
Sbjct: 321 ECVRGGVFRQYEVTGDKDNAPVCRLLTTIAITKNGITRIGGPPAWDLSKFKTDKKIEDEE 380
Query: 355 LKALL 359
+ +L
Sbjct: 381 ILKIL 385
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 25/276 (9%)
Query: 57 LLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHV 116
LL + K I ++ AFP +S+N H++P + D +LK D +KID+G H+
Sbjct: 29 LLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGD-TTVLKEGDYLKIDVGVHI 87
Query: 117 DGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176
DGFIA A T+ VG ++ + AA A AA+ + + G + + ++
Sbjct: 88 DGFIADTAVTVRVGM--------EEDELMEAAKEALNAAISVARAGVEIKELGKAIENEI 139
Query: 177 KDFECKPLEGMLSHQLKQGQIDGEKTI--IQNPSDSQKKEHEKYTFETNEVYAMDVLVST 234
+ KP+ + H++++ ++ +I I P H+ Y + +V+A++ +
Sbjct: 140 RKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP-------HDNYVLKEGDVFAIEPFATI 192
Query: 235 GDG-VGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFEN---ESQA 290
G G V T + +Y + + +++ +R +++++Y +PF R+ +N E Q
Sbjct: 193 GAGQVIEVPPTLIYMYVR---DVPVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQL 249
Query: 291 RLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLL 326
+L + K I + VL E VAQF+ T+++
Sbjct: 250 KLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 25/276 (9%)
Query: 57 LLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHV 116
LL + K I ++ AFP +S+N H++P + D +LK D +KID+G H+
Sbjct: 29 LLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGD-TTVLKEGDYLKIDVGVHI 87
Query: 117 DGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176
DGFIA A T+ VG ++ + AA A AA+ + + G + + ++
Sbjct: 88 DGFIADTAVTVRVGM--------EEDELMEAAKEALNAAISVARAGVEIKELGKAIENEI 139
Query: 177 KDFECKPLEGMLSHQLKQGQIDGEKTI--IQNPSDSQKKEHEKYTFETNEVYAMDVLVST 234
+ KP+ + H++++ ++ +I I P H+ Y + +V+A++ +
Sbjct: 140 RKRGFKPIVNLSGHKIERYKLHAGISIPNIYRP-------HDNYVLKEGDVFAIEPFATI 192
Query: 235 GDG-VGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFEN---ESQA 290
G G V T + +Y + + +++ +R +++++Y +PF R+ +N E Q
Sbjct: 193 GAGQVIEVPPTLIYMYVR---DVPVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQL 249
Query: 291 RLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLL 326
+L + K I + VL E VAQF+ T+++
Sbjct: 250 KLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 20/320 (6%)
Query: 15 AEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKK 74
A + + ++ A+E +V K V+ + +ICE ++ S+ K +
Sbjct: 53 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICE-----KLEDCSRKLIKENGLNA 107
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A T+ K+
Sbjct: 108 GLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCAFTVTFN-PKY 165
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT--VQKICKDFECKPLEGMLSHQL 192
+ +A + +RL G + ++ V+ K ++ KP+ + H +
Sbjct: 166 DTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSI 225
Query: 193 KQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKT 252
Q +I KT+ K E E EVYA++ STG GV + D + Y K
Sbjct: 226 GQYRIHAGKTV------PIVKGGEATRMEEGEVYAIETFGSTGKGVVHD-DMECSHYMKN 278
Query: 253 EE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFE--NESQARLGINECVKHKLIEPFQV 308
+ + ++L ++ + + + + F R+ + ES+ + + +++P+
Sbjct: 279 FDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPP 338
Query: 309 LYEKPGETVAQFKFTVLLMP 328
L + G AQF+ T+LL P
Sbjct: 339 LCDIKGSYTAQFEHTILLRP 358
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 20/320 (6%)
Query: 15 AEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKK 74
A + + ++ A+E +V K V+ + +ICE ++ S+ K +
Sbjct: 52 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICE-----KLEDCSRKLIKENGLNA 106
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A T+ K+
Sbjct: 107 GLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCAFTVTFN-PKY 164
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT--VQKICKDFECKPLEGMLSHQL 192
+ +A + +RL G + ++ V+ K ++ KP+ + H +
Sbjct: 165 DTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSI 224
Query: 193 KQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKT 252
Q +I KT+ K E E EVYA++ STG GV + D + Y K
Sbjct: 225 GQYRIHAGKTV------PIIKGGEATRMEEGEVYAIETFGSTGKGVVHD-DMECSHYMKN 277
Query: 253 EE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFE--NESQARLGINECVKHKLIEPFQV 308
+ + ++L ++ + + + + F R+ + ES+ + + +++P+
Sbjct: 278 FDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPP 337
Query: 309 LYEKPGETVAQFKFTVLLMP 328
L + G AQF+ T+LL P
Sbjct: 338 LCDIKGSYTAQFEHTILLRP 357
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 20/320 (6%)
Query: 15 AEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKK 74
A + + ++ A+E +V K V+ + +ICE ++ S+ K +
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICE-----KLEDCSRKLIKENGLNA 215
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A T+ K+
Sbjct: 216 GLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCAFTVTFN-PKY 273
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT--VQKICKDFECKPLEGMLSHQL 192
+ +A + +RL G + ++ V+ K ++ KP+ + H +
Sbjct: 274 DTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSI 333
Query: 193 KQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKT 252
Q +I KT+ K E E EVYA++ STG GV + D + Y K
Sbjct: 334 GQYRIHAGKTV------PIVKGGEATRMEEGEVYAIETFGSTGKGVVHD-DMECSHYMKN 386
Query: 253 EE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFE--NESQARLGINECVKHKLIEPFQV 308
+ + ++L ++ + + + + F R+ + ES+ + + +++P+
Sbjct: 387 FDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPP 446
Query: 309 LYEKPGETVAQFKFTVLLMP 328
L + G AQF+ T+LL P
Sbjct: 447 LCDIKGSYTAQFEHTILLRP 466
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 20/320 (6%)
Query: 15 AEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKK 74
A + + ++ A+E +V K V+ + +ICE ++ S+ K +
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICE-----KLEDCSRKLIKENGLNA 215
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A T+ K+
Sbjct: 216 GLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCAFTVTFN-PKY 273
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT--VQKICKDFECKPLEGMLSHQL 192
+ +A + +RL G + ++ V+ K ++ KP+ + H +
Sbjct: 274 DTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSI 333
Query: 193 KQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKT 252
Q +I KT+ K E E EVYA++ STG GV + D + Y K
Sbjct: 334 GQYRIHAGKTV------PIIKGGEATRMEEGEVYAIETFGSTGKGVVHD-DMECSHYMKN 386
Query: 253 EE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFE--NESQARLGINECVKHKLIEPFQV 308
+ + ++L ++ + + + + F R+ + ES+ + + +++P+
Sbjct: 387 FDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPP 446
Query: 309 LYEKPGETVAQFKFTVLLMP 328
L + G AQF+ T+LL P
Sbjct: 447 LCDIKGSYTAQFEHTILLRP 466
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 35/278 (12%)
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
GI FP +S+N+C H++ + D++LK +DV+KID G H DG I A T+
Sbjct: 94 GIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAF----- 148
Query: 135 RKCMGKKAN---AILAAHYASEAAL-------RLMKPGNDTYLITDT--VQKICKDFECK 182
K N ++AA +E + R+ G D + + V+ + + +
Sbjct: 149 ------KENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIR 202
Query: 183 PLEGMLSHQLKQGQIDGEKTIIQ-NPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGRE 241
P+ + H + Q +I G +I N D+ + + + + YA++ +TG G +
Sbjct: 203 PISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSF-------YAVETFATTGKGSIDD 255
Query: 242 QDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLG----INEC 297
+ T ++ +L K + V+ +PF+ R + + G +N
Sbjct: 256 RPPCSHFVLNTYKSRKLFNKDLIKVYEFVKDSLGTLPFSPRHLDYYGLVKGGSLKSVNLL 315
Query: 298 VKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRIT 335
L+ P+ L + G VAQF+ TV L +G +T
Sbjct: 316 TMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLT 353
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 10 EEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAK---------DICEFSDQLLFD 60
++K I ++ V+ KY+ A +I LK V ++ +K ++C +D +
Sbjct: 36 KDKNILQESVLNKYRTAGQIAQTALKYVTSLINDSYHSKTTQRQLTVPELCLLTDSFILT 95
Query: 61 ETSKCFKKIKDMKKGIAFPTCISVNNCICHFSP------------------LRSDPDLIL 102
+ +K K ++GIA PT I ++ + P S L
Sbjct: 96 RLEQYYKN-KVNERGIAIPTTIDIDQISGGWCPEIDDTQNLLNWNKGKDSTFASSVTGTL 154
Query: 103 KREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAA 148
+ D+VKI LG H+DG+ + V+HT+V+ K + + +L
Sbjct: 155 RPGDLVKITLGVHIDGYTSEVSHTMVIYPVDETKPILQPTGPLLGG 200
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIK-----DMKK 74
+ K K A + V L+ V + V +A D+ + L+ + FKK++
Sbjct: 22 IEKMKKAGKAVAVALREVRKVIVPGKTAWDV----ETLVLE----IFKKLRVKPAFKGYG 73
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
G + TC+SVN + H PL+ + K D+V +D+GA G A T +VG
Sbjct: 74 GYKYATCVSVNEEVVHGLPLKEK---VFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDE 130
Query: 135 RKCMGKKANAILAAHYASEAALRLMKP----GNDTYLITDTVQKI 175
R GK+ + E A++++KP G+ ++ I +TV+ +
Sbjct: 131 R---GKE--LVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESV 170
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 16/179 (8%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 65
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 66 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 119
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG 195
MG++ I + ALR++KPG + I +QK + + H + QG
Sbjct: 120 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQG 176
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 16/179 (8%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 64
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 65 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 118
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG 195
MG++ I + ALR++KPG + I +QK + + H + QG
Sbjct: 119 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQG 175
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 16/179 (8%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 65
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 66 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 119
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG 195
MG++ I + ALR++KPG + I +QK + + H + QG
Sbjct: 120 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQG 176
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 16/179 (8%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 65
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 66 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 119
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG 195
MG++ I + ALR++KPG + I +QK + + H + QG
Sbjct: 120 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQG 176
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 8 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 62
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 63 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 116
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 117 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 152
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 65
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 66 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 119
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 120 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 155
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 64
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 65 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 118
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 119 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 154
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 65
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 66 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 119
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 120 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 155
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 64
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 65 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 118
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 119 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 154
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 64
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 65 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 118
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 119 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 154
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDE---TSKCFKKIKDMKKGI 76
+ K ++A + VL+++ S ++ + + +E S C G
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY-----HGY 64
Query: 77 AFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 65 PKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKP---T 118
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
MG++ I + ALR++KPG + I +QK
Sbjct: 119 IMGERLCRI--TQESLYLALRMVKPGINLREIGAAIQK 154
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 58 LFDETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAH 115
LF+E I D FP TCISVN + H P + +++ D+V ID+ A
Sbjct: 46 LFEEYGAISAPIHDEN----FPGQTCISVNEEVAHGIPSKR----VIREGDLVNIDVSAL 97
Query: 116 VDGFIAVVAHTIVVGAA----KHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT 171
+G+ A + VVG + K + C A A E A+ +KPG I
Sbjct: 98 KNGYYADTGISFVVGESDDPMKQKVCD--------VATMAFENAIAKVKPGTKLSNIGKA 149
Query: 172 VQKICKDFECKPLEGMLSHQL 192
V + + K ++ + H +
Sbjct: 150 VHNTARQNDLKVIKNLTGHGV 170
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 77 AFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
FP C SVN ICH P + L+ D++ ID+ ++++GF + T+ +G
Sbjct: 121 GFPKSVCTSVNEVICHGIPDSRE----LEEGDILNIDVSSYLNGFHGDLNETVFIGRPDD 176
Query: 135 RKCMGKKANAILAAHYASE---AALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQ 191
+++ H A E A + ++KP + D ++ ++C + H
Sbjct: 177 --------DSVRLVHAAYECLCAGIGVVKPEALYKQVGDAIEACASQYQCSVVRTYTGHG 228
Query: 192 L 192
+
Sbjct: 229 V 229
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 5 NDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64
+D+ + + + ++ + K K A EI R +++ + K+I L + T +
Sbjct: 124 DDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAA-----LLEYTMR 178
Query: 65 CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVA 124
K+ +G+AF T ++ + C P D +++R DV+ ID GA + + A +
Sbjct: 179 -----KEGAEGVAFDTIVA-SGCRSAL-PHGKASDKVVERGDVIVIDFGATYENYCADIT 231
Query: 125 HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPL 184
+ +G K+ ++I+ A E AL++ K G L+ ++ ++ K
Sbjct: 232 RVVSIGEPSDEV---KEVHSIVLE--AQERALKIAKAGVTGKLLDSVAREFIRE---KGY 283
Query: 185 EGMLSHQLKQG 195
H L G
Sbjct: 284 GEFFGHSLGHG 294
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 74 KGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA 132
+G + TC S+N+ ICH P + +LK D++K+D+ + G I+ + VVG +
Sbjct: 61 EGYKYATCCSINDEICHGFPRKK----VLKDGDLIKVDMCVDLKGAISDSCWSYVVGES 115
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 1 MGDKNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFD 60
+G + E + V+ K ++A I L + + ++ + + L D
Sbjct: 34 VGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD 93
Query: 61 ETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDG 118
+ + K FP C S+N ICH P + ++ D+V ID+ A++ G
Sbjct: 94 --NGAYPSTLGYK---GFPKSCCTSLNEVICHGIPDST----VITDGDIVNIDVTAYIGG 144
Query: 119 FIAVVAHTIVVG--AAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176
T G A +HR + + A + A+ +KPG +I ++
Sbjct: 145 VHGDTNATFPAGDVADEHRLLVDRTREATM-------RAINTVKPGRALSVIGRVIESYA 197
Query: 177 KDFECKPLEGMLSHQL 192
F + H +
Sbjct: 198 NRFGYNVVRDFTGHGI 213
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 1 MGDKNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFD 60
+G + E + V+ K ++A I L + + ++ + + L D
Sbjct: 28 VGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD 87
Query: 61 ETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDG 118
+ + K FP C S+N ICH P + ++ D+V ID+ A++ G
Sbjct: 88 --NGAYPSTLGYK---GFPKSCCTSLNEVICHGIPDST----VITDGDIVNIDVTAYIGG 138
Query: 119 FIAVVAHTIVVG--AAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176
T G A +HR + + A + A+ +KPG +I ++
Sbjct: 139 VHGDTNATFPAGDVADEHRLLVDRTREATM-------RAINTVKPGRALSVIGRVIESYA 191
Query: 177 KDFECKPLEGMLSHQL 192
F + H +
Sbjct: 192 NRFGYNVVRDFTGHGI 207
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 1 MGDKNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFD 60
+G + E + V+ K ++A I L + + ++ + + L D
Sbjct: 31 VGKPAAQEGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVD 90
Query: 61 ETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDG 118
+ + K FP C S+N ICH P + ++ D+V ID+ A++ G
Sbjct: 91 --NGAYPSTLGYK---GFPKSCCTSLNEVICHGIPDST----VITDGDIVNIDVTAYIGG 141
Query: 119 FIAVVAHTIVVG--AAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176
T G A +HR + + A + A+ +KPG +I ++
Sbjct: 142 VHGDTNATFPAGDVADEHRLLVDRTREATM-------RAINTVKPGRALSVIGRVIESYA 194
Query: 177 KDFECKPLEGMLSHQL 192
F + H +
Sbjct: 195 NRFGYNVVRDFTGHGI 210
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 74 KGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG--A 131
KG C S+N+ +CH P D LK D+V ID+ +DG+ + VG A
Sbjct: 65 KGFPKSICTSINHVVCHGIP----NDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVA 120
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPG 162
K ++ + +A++ + +++PG
Sbjct: 121 IKPKRLIQVTYDAMM-------KGIEVVRPG 144
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIDAGCEYKGYAGAITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 74 KGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG--A 131
KG C S+N+ +CH P D LK D+V ID+ +DG+ + VG A
Sbjct: 65 KGFPKSICTSINHVVCHGIP----NDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVA 120
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPG 162
K ++ + +A++ + +++PG
Sbjct: 121 IKPKRLIQVTYDAMM-------KGIEVVRPG 144
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 77 AFPT--CISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKH 134
FP C SVN+ + H P + +L D+V ID GA +DG+ A T VG
Sbjct: 92 GFPASICSSVNDQVVHGIPSAT---AVLADGDLVSIDCGAILDGWHGDSAWTFAVG---- 144
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPGN 163
+ A + EA + M PGN
Sbjct: 145 -TVIPSDEALSEATRLSMEAGIAAMIPGN 172
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENEXEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENEXEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--K 133
FP C SVN ICH P R L+ D+V +D+ + +G+ + T VG
Sbjct: 110 FPKSCCTSVNEVICHGIPDRRP----LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDG 165
Query: 134 HRKCMGKKANAILAAHYASEAALRLMKPGN 163
RK + ++ A A + +R + GN
Sbjct: 166 ARKLVQTTYECLMQAIDAVKPGVRYRELGN 195
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENEXEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--K 133
FP C SVN ICH P R L+ D+V +D+ + +G+ + T VG
Sbjct: 109 FPKSCCTSVNEVICHGIPDRRP----LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDG 164
Query: 134 HRKCMGKKANAILAAHYASEAALRLMKPGN 163
RK + ++ A A + +R + GN
Sbjct: 165 ARKLVQTTYECLMQAIDAVKPGVRYRELGN 194
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--K 133
FP C SVN ICH P R L+ D+V +D+ + +G+ + T VG
Sbjct: 134 FPKSCCTSVNEVICHGIPDRRP----LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDG 189
Query: 134 HRKCMGKKANAILAAHYASEAALRLMKPGN 163
RK + ++ A A + +R + GN
Sbjct: 190 ARKLVQTTYECLMQAIDAVKPGVRYRELGN 219
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP 79
+ +K A+EIV++V IE +E S +++ + ++ +E ++F
Sbjct: 156 IKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFGA---------DDVSFE 206
Query: 80 TCISV--NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG 130
++ N H P +++ DVV D GA G+ + V T+VVG
Sbjct: 207 PIVASGPNGANPHHRPSHRK----IRKGDVVIFDYGAKYLGYCSDVTRTVVVG 255
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 160 KPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKT--IIQNPSD-----SQK 212
K G ++ I D + K D+E PL+ + SH +I EK I++ SD +++
Sbjct: 9 KXGKHSWRIXDAIFKNLWDYEYVPLQLISSH----ARIGEEKARNILKYLSDLRVVQNRQ 64
Query: 213 KEHE--KYTFETNEVYAMDVLVSTG--DGVGR 240
K++E +TF +Y++ LV +G D +G+
Sbjct: 65 KDYEGSTFTFIGLSLYSLHRLVRSGKVDAIGK 96
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT---ENECXEMRDGDLVLIDAGCEYKGYAGDITRTF 277
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 278 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 326
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 327 VKLGILKGDVD--ELIAQN 343
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 26 ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVN 85
A EI ++ + IE+ E +++ + L+ K+ +K AF T I+
Sbjct: 136 ACEIADKAVMAAIEEITEGKREREVAAKVEYLM---------KMNGAEKP-AFDTIIASG 185
Query: 86 NCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAI 145
+ + SD + +R D+V IDLGA + + + + TIVVG+ ++ ++ I
Sbjct: 186 HRSALPHGVASDKRI--ERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQ---REIYEI 240
Query: 146 LAAHYASEAALRLMKPGNDTYLITDTVQKICKDF 179
+ A + A+ KPG + ++I K++
Sbjct: 241 VLE--AQKRAVEAAKPGMTAKELDSIAREIIKEY 272
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 81 CISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGK 140
C SVN +CH P LK D++ ID+ G + + T VG GK
Sbjct: 167 CTSVNEIVCHGIPDYRP----LKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGK 222
Query: 141 KANAILAAHYASEAALRLMKPG 162
+ + +++ A++ KPG
Sbjct: 223 E--LVETCYFSLMEAIKKCKPG 242
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 69 IKDMKKGIAF-PTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
I+++ GIAF P S N +P + +++ D++ +D GA G+ + + TI
Sbjct: 175 IRELSDGIAFEPIVASGENAA---NPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTI 231
Query: 128 VVGAAKHR 135
+G R
Sbjct: 232 GLGELDER 239
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI H++ + + ++ D+V I G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILHYT----ENECEMRDGDLVLIAAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 73 KKGIAFPTCISV-----NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTI 127
+ G +P+ ++ N CI ++ + + ++ D+V ID G G+ + T
Sbjct: 221 RHGARYPSYNTIVGSGENGCILAYT----ENEXEMRDGDLVLIDAGCEYKGYAGDITRTF 276
Query: 128 VVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGM 187
V K + + + +L + E +LRL +PG +T V +I + G+
Sbjct: 277 PVNG-KFTQAQREIYDIVLES---LETSLRLYRPGTSILEVTGEVVRIM-------VSGL 325
Query: 188 LSHQLKQGQIDGEKTIIQN 206
+ + +G +D + I QN
Sbjct: 326 VKLGILKGDVD--ELIAQN 342
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 287 ESQARLGINECVKHKLIEPFQVLYEKPGETVAQ 319
+S A LG+N C ++++ F+ L +PG++V Q
Sbjct: 143 QSAATLGVNPCTAYRMLMDFEQL--QPGDSVIQ 173
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 287 ESQARLGINECVKHKLIEPFQVLYEKPGETVAQ 319
+S A LG+N C ++++ F+ L +PG++V Q
Sbjct: 130 QSAATLGVNPCTAYRMLMDFEQL--QPGDSVIQ 160
>pdb|2YEW|B Chain B, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|E Chain E, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|H Chain H, Modeling Barmah Forest Virus Structural Proteins
pdb|2YEW|K Chain K, Modeling Barmah Forest Virus Structural Proteins
Length = 427
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 31/96 (32%)
Query: 200 EKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLK 259
+ I P S +K +EVY D GR D + T+
Sbjct: 154 QSKFILGPISSAWSPFDKVIVYRDEVYNEDYAPYGSGQAGRFGDIQSRTVNSTDVYANTN 213
Query: 260 LKASRAFFGEVQKKYSNMPFNLRFFENESQARLGIN 295
LK R G V Y+ P +++ E L N
Sbjct: 214 LKLKRPASGNVHVPYTQTPSGFSYWKKEKGVPLNRN 249
>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
Freundii (Native Form)
Length = 552
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPG 162
R C+ KANA A++ +SE+ L M PG
Sbjct: 508 RTCLSSKANAGRASYLSSESLLGNMDPG 535
>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
Freundii In Complex With Amp-Pnp And Mg2+
Length = 552
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 135 RKCMGKKANAILAAHYASEAALRLMKPG 162
R C+ KANA A++ +SE+ L M PG
Sbjct: 508 RTCLSSKANAGRASYLSSESLLGNMDPG 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,409,563
Number of Sequences: 62578
Number of extensions: 413566
Number of successful extensions: 1183
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 67
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)