Query psy18115
Match_columns 365
No_of_seqs 276 out of 2310
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:54:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00495 crvDNA_42K 42K curve 100.0 5E-89 1.1E-93 662.4 39.9 362 4-365 3-365 (389)
2 PTZ00053 methionine aminopepti 100.0 2.6E-70 5.7E-75 534.2 34.4 304 13-338 151-468 (470)
3 PRK08671 methionine aminopepti 100.0 8.9E-70 1.9E-74 511.9 32.8 289 19-336 1-291 (291)
4 TIGR00501 met_pdase_II methion 100.0 1.7E-69 3.6E-74 510.4 33.3 292 17-336 2-295 (295)
5 KOG2776|consensus 100.0 9E-69 2E-73 491.2 28.7 364 1-364 1-367 (398)
6 cd01088 MetAP2 Methionine Amin 100.0 3.2E-68 7E-73 501.3 32.3 288 20-336 1-291 (291)
7 COG0024 Map Methionine aminope 100.0 1.5E-62 3.2E-67 444.9 29.3 249 13-338 4-253 (255)
8 KOG2738|consensus 100.0 4.9E-56 1.1E-60 397.8 23.1 247 12-337 114-360 (369)
9 PLN03158 methionine aminopepti 100.0 3.7E-53 8E-58 410.6 29.6 248 11-337 134-381 (396)
10 PRK12897 methionine aminopepti 100.0 1.1E-51 2.4E-56 381.3 28.3 245 13-336 3-247 (248)
11 PRK07281 methionine aminopepti 100.0 2.8E-51 6.1E-56 383.5 28.1 249 13-339 3-282 (286)
12 KOG2775|consensus 100.0 3.5E-51 7.7E-56 366.6 23.5 302 16-338 81-395 (397)
13 TIGR00500 met_pdase_I methioni 100.0 6.3E-50 1.4E-54 369.6 29.7 244 13-337 2-247 (247)
14 PRK12318 methionine aminopepti 100.0 4.6E-50 1E-54 377.3 29.2 249 10-338 39-290 (291)
15 PRK12896 methionine aminopepti 100.0 6.2E-50 1.3E-54 371.3 29.6 248 12-337 8-255 (255)
16 PRK05716 methionine aminopepti 100.0 2.6E-48 5.6E-53 359.8 29.6 249 12-339 3-251 (252)
17 cd01086 MetAP1 Methionine Amin 100.0 6.5E-44 1.4E-48 327.6 28.1 238 20-336 1-238 (238)
18 PRK09795 aminopeptidase; Provi 100.0 1.3E-43 2.8E-48 344.6 26.2 198 11-232 124-324 (361)
19 cd01089 PA2G4-like Related to 100.0 4.4E-43 9.6E-48 320.0 25.8 228 20-336 1-228 (228)
20 PRK15173 peptidase; Provisiona 100.0 1.6E-42 3.5E-47 331.3 26.9 192 12-232 93-288 (323)
21 cd01090 Creatinase Creatine am 100.0 2.1E-42 4.6E-47 315.2 25.1 197 20-233 1-199 (228)
22 COG0006 PepP Xaa-Pro aminopept 100.0 3.5E-42 7.6E-47 337.3 25.2 224 12-341 152-380 (384)
23 PRK10879 proline aminopeptidas 100.0 1.3E-41 2.9E-46 337.1 28.5 194 12-234 171-386 (438)
24 PRK14575 putative peptidase; P 100.0 1.4E-41 3E-46 334.5 27.2 226 12-344 176-405 (406)
25 cd01087 Prolidase Prolidase. E 100.0 2.6E-41 5.7E-46 311.3 24.6 188 20-234 1-209 (243)
26 TIGR02993 ectoine_eutD ectoine 100.0 3.7E-41 8.1E-46 330.3 25.2 197 12-232 156-357 (391)
27 PRK14576 putative endopeptidas 100.0 1.4E-40 3.1E-45 327.3 27.1 224 12-342 175-402 (405)
28 PRK13607 proline dipeptidase; 100.0 8.4E-40 1.8E-44 323.8 23.8 252 12-337 159-439 (443)
29 cd01092 APP-like Similar to Pr 100.0 2.2E-37 4.8E-42 278.2 24.0 184 20-232 1-187 (208)
30 PF00557 Peptidase_M24: Metall 100.0 9.5E-37 2.1E-41 274.1 23.7 184 21-232 1-188 (207)
31 cd01085 APP X-Prolyl Aminopept 100.0 1E-36 2.2E-41 276.7 22.6 186 21-232 5-198 (224)
32 cd01091 CDC68-like Related to 100.0 5.3E-36 1.1E-40 275.1 22.4 193 20-233 1-207 (243)
33 cd01066 APP_MetAP A family inc 100.0 1.3E-35 2.9E-40 264.9 22.9 183 20-232 1-186 (207)
34 KOG2737|consensus 100.0 6.6E-36 1.4E-40 276.1 17.4 273 10-362 181-481 (492)
35 KOG2414|consensus 100.0 6.7E-34 1.4E-38 265.5 18.5 194 12-235 226-439 (488)
36 KOG2413|consensus 99.8 2.4E-19 5.3E-24 176.0 20.2 200 12-233 305-516 (606)
37 KOG1189|consensus 99.8 4.1E-19 8.9E-24 176.7 17.4 198 13-232 136-344 (960)
38 COG5406 Nucleosome binding fac 99.5 2.7E-13 5.9E-18 133.2 15.4 207 13-241 169-390 (1001)
39 KOG2738|consensus 97.7 0.00023 4.9E-09 65.6 8.9 43 139-181 123-165 (369)
40 COG0024 Map Methionine aminope 97.3 0.0016 3.5E-08 59.9 9.9 86 139-233 12-100 (255)
41 cd01066 APP_MetAP A family inc 97.2 0.0064 1.4E-07 53.5 12.2 102 21-131 102-204 (207)
42 cd01092 APP-like Similar to Pr 96.9 0.013 2.9E-07 52.0 11.7 101 21-131 103-205 (208)
43 cd01091 CDC68-like Related to 96.9 0.015 3.2E-07 53.6 11.7 106 21-132 119-235 (243)
44 cd01090 Creatinase Creatine am 96.8 0.025 5.5E-07 51.5 12.5 105 22-132 110-221 (228)
45 TIGR00500 met_pdase_I methioni 96.7 0.038 8.3E-07 50.7 12.8 103 22-132 117-239 (247)
46 PRK05716 methionine aminopepti 96.6 0.038 8.2E-07 50.9 12.3 103 22-133 119-242 (252)
47 PRK09795 aminopeptidase; Provi 96.5 0.045 9.8E-07 53.3 12.8 106 17-133 236-344 (361)
48 PRK12896 methionine aminopepti 96.4 0.062 1.4E-06 49.5 12.5 103 22-133 124-248 (255)
49 PRK12318 methionine aminopepti 96.4 0.052 1.1E-06 51.4 11.9 88 22-118 159-248 (291)
50 cd01088 MetAP2 Methionine Amin 96.3 0.02 4.3E-07 54.2 8.8 83 140-234 3-85 (291)
51 PLN03158 methionine aminopepti 96.3 0.023 5E-07 56.0 9.5 104 120-234 128-232 (396)
52 PRK12897 methionine aminopepti 96.3 0.043 9.4E-07 50.5 10.6 103 22-132 118-240 (248)
53 TIGR02993 ectoine_eutD ectoine 96.2 0.051 1.1E-06 53.6 11.6 105 21-132 270-375 (391)
54 cd01087 Prolidase Prolidase. E 96.2 0.088 1.9E-06 48.2 12.5 110 21-132 103-236 (243)
55 cd01086 MetAP1 Methionine Amin 96.2 0.12 2.6E-06 47.1 13.0 103 21-132 108-231 (238)
56 PF00557 Peptidase_M24: Metall 96.0 0.09 2E-06 46.7 11.2 100 22-129 103-205 (207)
57 PRK14575 putative peptidase; P 96.0 0.068 1.5E-06 53.0 11.1 103 22-133 286-391 (406)
58 PRK07281 methionine aminopepti 96.0 0.075 1.6E-06 50.2 10.8 86 22-116 149-237 (286)
59 PRK15173 peptidase; Provisiona 95.6 0.14 2.9E-06 49.3 11.1 104 21-133 202-308 (323)
60 cd01089 PA2G4-like Related to 95.5 0.18 3.9E-06 45.8 11.3 102 21-133 120-222 (228)
61 PRK08671 methionine aminopepti 95.5 0.14 3E-06 48.4 10.8 100 22-131 102-206 (291)
62 PRK14576 putative endopeptidas 95.4 0.17 3.7E-06 50.2 11.6 104 21-132 284-389 (405)
63 COG0006 PepP Xaa-Pro aminopept 95.0 0.27 5.8E-06 48.3 11.4 102 22-132 263-368 (384)
64 TIGR00495 crvDNA_42K 42K curve 94.3 0.45 9.8E-06 46.9 11.1 105 22-129 139-248 (389)
65 PRK10879 proline aminopeptidas 94.2 0.64 1.4E-05 46.6 12.2 106 22-132 283-412 (438)
66 TIGR00501 met_pdase_II methion 94.2 0.41 8.9E-06 45.4 10.2 97 23-129 106-207 (295)
67 PTZ00053 methionine aminopepti 93.4 0.61 1.3E-05 46.9 10.1 105 22-131 264-377 (470)
68 cd01085 APP X-Prolyl Aminopept 92.9 1.4 3.1E-05 39.9 11.1 83 141-234 6-93 (224)
69 PRK13607 proline dipeptidase; 88.9 2.8 6E-05 42.2 9.6 39 22-60 269-307 (443)
70 KOG1189|consensus 78.2 10 0.00022 40.0 8.3 105 22-134 258-371 (960)
71 KOG2775|consensus 75.0 15 0.00033 34.6 7.8 83 140-232 87-173 (397)
72 PF00254 FKBP_C: FKBP-type pep 62.2 20 0.00043 27.1 5.1 51 100-164 3-60 (94)
73 KOG2776|consensus 58.8 70 0.0015 31.0 8.9 39 140-178 23-61 (398)
74 cd01666 TGS_DRG_C TGS_DRG_C: 52.7 52 0.0011 24.3 5.6 20 41-60 21-40 (75)
75 PF07315 DUF1462: Protein of u 48.2 28 0.00061 26.7 3.6 58 258-318 13-79 (93)
76 PF07305 DUF1454: Protein of u 43.3 1.9E+02 0.004 25.5 8.3 73 139-231 115-187 (200)
77 COG5406 Nucleosome binding fac 39.0 1.1E+02 0.0025 31.9 7.3 82 24-114 301-385 (1001)
78 PRK01490 tig trigger factor; P 38.3 1.3E+02 0.0028 30.0 7.8 34 99-132 155-192 (435)
79 cd06396 PB1_NBR1 The PB1 domai 37.1 33 0.00072 25.8 2.5 37 263-299 24-65 (81)
80 TIGR00115 tig trigger factor. 30.5 2E+02 0.0043 28.4 7.6 34 99-132 144-181 (408)
81 PRK00464 nrdR transcriptional 29.4 1.5E+02 0.0032 25.3 5.5 42 26-67 84-125 (154)
82 PF11434 CHIPS: Chemotaxis-inh 28.8 69 0.0015 23.2 2.9 16 315-330 24-39 (91)
83 PF12631 GTPase_Cys_C: Catalyt 27.5 1.3E+02 0.0028 21.9 4.3 40 138-177 11-50 (73)
84 KOG3908|consensus 27.5 1.3E+02 0.0029 28.4 5.2 43 308-350 95-137 (396)
85 KOG2737|consensus 27.3 2E+02 0.0044 28.3 6.6 35 30-64 308-342 (492)
86 PF05184 SapB_1: Saposin-like 26.1 1.3E+02 0.0029 18.4 3.7 33 26-58 3-35 (39)
87 COG1504 Uncharacterized conser 25.2 1E+02 0.0022 24.7 3.5 48 310-362 12-61 (121)
88 PRK15463 cold shock-like prote 25.2 73 0.0016 23.1 2.6 48 74-121 16-64 (70)
89 PF04363 DUF496: Protein of un 24.7 2.3E+02 0.005 21.7 5.1 34 22-56 27-60 (95)
90 cd04938 TGS_Obg-like TGS_Obg-l 23.9 1.5E+02 0.0032 21.9 4.1 47 41-110 28-74 (76)
91 PRK14126 cell division protein 22.7 1.7E+02 0.0038 22.1 4.3 42 10-52 16-57 (85)
92 COG2944 Predicted transcriptio 22.5 1.3E+02 0.0027 23.9 3.6 34 15-53 44-77 (104)
93 COG4518 Mu-like prophage FluMu 22.2 26 0.00056 27.7 -0.3 41 323-365 41-92 (122)
94 PF00249 Myb_DNA-binding: Myb- 21.3 1.7E+02 0.0038 19.0 3.7 41 16-56 5-46 (48)
95 PF00313 CSD: 'Cold-shock' DNA 21.3 1.1E+02 0.0024 21.4 2.9 49 74-122 12-61 (66)
96 PRK05423 hypothetical protein; 21.3 1.7E+02 0.0036 22.7 3.9 25 32-56 43-67 (104)
97 cd06407 PB1_NLP A PB1 domain i 21.2 91 0.002 23.4 2.5 38 262-299 21-66 (82)
98 PRK10354 RNA chaperone/anti-te 20.7 1.3E+02 0.0028 21.7 3.2 48 74-121 16-64 (70)
99 PRK15464 cold shock-like prote 20.7 1.1E+02 0.0024 22.3 2.7 47 74-120 16-63 (70)
100 PF14615 Rsa3: Ribosome-assemb 20.4 32 0.00068 23.1 -0.1 29 18-46 16-44 (47)
No 1
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=100.00 E-value=5e-89 Score=662.38 Aligned_cols=362 Identities=60% Similarity=0.972 Sum_probs=332.9
Q ss_pred CCCCchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeec
Q psy18115 4 KNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCIS 83 (365)
Q Consensus 4 ~~~~~~~~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s 83 (365)
++..+++|++||+|+||++||+||+|++++++++.+.++||+++.||+..++++|++.++..|........|++||+|+|
T Consensus 3 ~~~~~~~~~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~ikpG~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vS 82 (389)
T TIGR00495 3 KDEQQEQAYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCIS 82 (389)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEe
Confidence 34567888999999999999999999999999999999999999999999999999987766654333347899999999
Q ss_pred cCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q psy18115 84 VNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGN 163 (365)
Q Consensus 84 ~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~ 163 (365)
.|++++||+|..++++++|++||+|+||+|+++|||++|++|||++|+.++.+++++++++++++++|++++++.+|||+
T Consensus 83 vN~~v~H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~ 162 (389)
T TIGR00495 83 VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGN 162 (389)
T ss_pred cCCeeeCCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999997654458899999999999999999999999999999754444568999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCC
Q psy18115 164 DTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQD 243 (365)
Q Consensus 164 ~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~ 243 (365)
+++||+++++++++++||.++++++|||||+++|||++.|++|++...+....+..|++||||+||||+++|.|+++..+
T Consensus 163 ~~~dI~~ai~~v~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~G~g~v~~~~ 242 (389)
T TIGR00495 163 TNTQVTEAINKVAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDAD 242 (389)
T ss_pred cHHHHHHHHHHHHHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecCCCceEEECC
Confidence 99999999999999999999999999999999999887777877543222235689999999999999999999999998
Q ss_pred CceeEEecC-CccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEE
Q psy18115 244 TRVTIYKKT-EENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKF 322 (365)
Q Consensus 244 ~~~~iy~~~-~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~ 322 (365)
++||||+++ ..+|+||+++||++|++|+++|++|||++|||+++.++++|+.||++||+|.|||||++++|++||||||
T Consensus 243 ~~~tiy~~~~~~~y~lk~~~sr~~l~ei~~~f~~~PF~~R~l~~~~~~~~gl~e~~~~~~l~~ypvl~e~~g~~Vaqf~~ 322 (389)
T TIGR00495 243 QRTTIYKRDPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVKHELLQPYPVLYEKEGEFVAQFKF 322 (389)
T ss_pred CeeEEEEECCCCCcCCCCHHHHHHHHHHHHhCCCCCcchHHhcchhhHHHHHHHHHHCCCcccCCceEeeCCCeEEEEEE
Confidence 899999996 6789999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred EEEECCCCceEecCCCCCCCCccCCCcCCcHHHHHHhhccCCC
Q psy18115 323 TVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSSDLR 365 (365)
Q Consensus 323 Tv~vt~~g~~~lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (365)
||+|+++|+++||++|++++.|||+++|+||||++||++||+|
T Consensus 323 Tv~v~~~g~~~~t~~~~~~~~~~s~~~~~d~~~~~~l~~~~~~ 365 (389)
T TIGR00495 323 TVLLMPNGPMRITSGEFEPDLYKSEMEVQDPEIKALLASPIKR 365 (389)
T ss_pred EEEECCCCcEEeCCCCCCHhhcCCCCCCCCHHHHHHHhCcccc
Confidence 9999999999999999889999999999999999999999975
No 2
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=100.00 E-value=2.6e-70 Score=534.23 Aligned_cols=304 Identities=21% Similarity=0.347 Sum_probs=269.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCC
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFS 92 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~ 92 (365)
..+|++||++||+||+|++++++++.+.++||+|+.||+..++..+++.... .+...+++||+|+|.|++++||+
T Consensus 151 ~~~s~~EI~~~R~AaeIa~~vl~~~~~~IkpG~se~EIa~~ie~~ir~~~~~-----~G~~~g~aFPt~vS~N~~aaH~t 225 (470)
T PTZ00053 151 EKLSEEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEA-----DGLKCGWAFPTGCSLNHCAAHYT 225 (470)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHh-----cCCcccCCCCceeecCccccCCC
Confidence 4689999999999999999999999999999999999999999887765321 11124788999999999999999
Q ss_pred CCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q psy18115 93 PLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTV 172 (365)
Q Consensus 93 p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i 172 (365)
|+.++ +++|++||+|+||+|++++||++|++|||++|+ +++++++++++|+++||+.++||++++||++++
T Consensus 226 P~~gd-~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg~--------~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AI 296 (470)
T PTZ00053 226 PNTGD-KTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNP--------KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAI 296 (470)
T ss_pred CCCCC-CcEecCCCeEEEEEeEEECCEEEeEEEEEEeCH--------HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 98655 478999999999999999999999999999973 588999999999999999999999999999999
Q ss_pred HHHHHhcCC---------ccccCcccccccc-ceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccC
Q psy18115 173 QKICKDFEC---------KPLEGMLSHQLKQ-GQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQ 242 (365)
Q Consensus 173 ~~~~~~~G~---------~~~~~~~GHgIG~-~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~ 242 (365)
+++++++|| .++++++|||||+ .+|+ ++. +++... .+..+|++||||+||||+++|.|++++.
T Consensus 297 qevies~G~e~~Gk~f~~k~I~nltGHgIG~y~iHe-~k~-iP~v~~-----~~~~~LeeGmVfaIEPf~stG~G~v~~~ 369 (470)
T PTZ00053 297 QEVIESYEVEIKGKTYPIKSIRNLNGHSIGPYIIHG-GKS-VPIVKG-----GENTRMEEGELFAIETFASTGRGYVNED 369 (470)
T ss_pred HHHHHHcCCcccCcccccccccCCcccCCCCccccC-CCc-CCeeCC-----CCCCEecCCCEEEEcceeeCCCCeEecC
Confidence 999999996 3578999999998 5564 332 233221 2567999999999999999999999884
Q ss_pred CCceeEEecC-Ccc-ccccchhHHHHHHHHHhhCCcccccccccCCh--hhhhhhHHHHHHcCccccccceeecCCCeeE
Q psy18115 243 DTRVTIYKKT-EEN-YQLKLKASRAFFGEVQKKYSNMPFNLRFFENE--SQARLGINECVKHKLIEPFQVLYEKPGETVA 318 (365)
Q Consensus 243 ~~~~~iy~~~-~~~-~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~--~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~a 318 (365)
. .++||++. +.+ ++||+++||++|++|+++|++||||+|||++. .+++++|.+|+++|+|.+||||++++|++||
T Consensus 370 ~-~~siY~~~~~~~~~~lk~~~ar~ll~~I~~~f~tlPF~~R~l~~~~~~~~~~gl~~lv~~giv~~Yp~L~e~~G~~VA 448 (470)
T PTZ00053 370 L-ECSHYMKDPGAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALKQLVDAGIVNPYPPLCDVRGSYTS 448 (470)
T ss_pred C-CceeeeEcCcCCcCCCCCHHHHHHHHHHHHHCCCCCcchhhhhccchhHHHHHHHHHHHCCCcccCCccCccCCCEEe
Confidence 4 69999985 444 59999999999999999999999999999985 4889999999999999999999999999999
Q ss_pred EEEEEEEECCCCceEecCCC
Q psy18115 319 QFKFTVLLMPNGPHRITGIP 338 (365)
Q Consensus 319 q~e~Tv~vt~~g~~~lT~~~ 338 (365)
||||||+|+++|.++||.+.
T Consensus 449 QfehTvll~p~~~~vis~g~ 468 (470)
T PTZ00053 449 QMEHTILLRPTCKEVLSRGD 468 (470)
T ss_pred EEEEEEEECCCCCEecCCCC
Confidence 99999999999999999764
No 3
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00 E-value=8.9e-70 Score=511.92 Aligned_cols=289 Identities=28% Similarity=0.441 Sum_probs=264.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCC
Q psy18115 19 VVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDP 98 (365)
Q Consensus 19 EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~ 98 (365)
+|++||+|++|++++++++.+.++||+|+.||++.++.++.+.|+ +.+||+|+|.|+..+||+|..++
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i~pG~se~ei~~~~~~~i~~~g~-----------~~afp~~vs~n~~~~H~~p~~~d- 68 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGA-----------KPAFPCNISINEVAAHYTPSPGD- 68 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCC-----------ccCCCCEEeeCCCccCCCCCCCC-
Confidence 489999999999999999999999999999999999999988763 46789999999999999997654
Q ss_pred CccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHh
Q psy18115 99 DLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKD 178 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~ 178 (365)
+++|++||+|+||+|++++||++|++||+++|+ +++++++++++|++++++.+|||++++||++++++++++
T Consensus 69 ~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~--------~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~ 140 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGG--------KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRS 140 (291)
T ss_pred CcccCCCCEEEEEEeEEECCEEEEEEEEEEeCh--------hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999994 478999999999999999999999999999999999999
Q ss_pred cCCccccCccccccccc-eecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecCCcccc
Q psy18115 179 FECKPLEGMLSHQLKQG-QIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQ 257 (365)
Q Consensus 179 ~G~~~~~~~~GHgIG~~-~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~ 257 (365)
+||.++.+++|||||++ +|+ + |.+++... .++.+|++||||+|||++++|.|++++. +++|||++. .+|+
T Consensus 141 ~G~~~~~~~~GHgiG~~~~he-~-p~ip~~~~-----~~~~~le~GmV~aIEp~~t~G~G~v~~~-~~~~iy~~~-~~~~ 211 (291)
T PRK08671 141 YGFKPIRNLTGHGLERYELHA-G-PSIPNYDE-----GGGVKLEEGDVYAIEPFATDGEGKVVEG-PEVEIYSLL-RNRP 211 (291)
T ss_pred cCCcccCCCcccCcCCCcccC-C-CccCccCC-----CCCceeCCCCEEEEcceEECCCCeEecC-CceEEEeec-CCCC
Confidence 99999999999999985 553 3 44444321 3568999999999999999999999877 489999984 5899
Q ss_pred ccchhHHHHHHHHHhhCCcccccccccCChhhh-hhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCceEecC
Q psy18115 258 LKLKASRAFFGEVQKKYSNMPFNLRFFENESQA-RLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITG 336 (365)
Q Consensus 258 lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~-~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~ 336 (365)
+|+++||++|++|+++|++|||+.|||++++.. ++++.+|+++|+|.|||||++++|++||||||||+|+++|++++|.
T Consensus 212 ~k~~~~r~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~yp~l~e~~~~~vaq~~~Tv~v~~~g~~~~t~ 291 (291)
T PRK08671 212 VRLPAARKLLEEIEEEYNTLPFAERWLEGLFGEDKLELRRLLKAGALYGYPVLKEVKGGLVSQAEHTVIVTEDGCEVTTK 291 (291)
T ss_pred CCCHHHHHHHHHHHHHCCCCCcchHHhhccchhhHHHHHHHHHCCCcccCCccEecCCCEEEEEEEEEEECCCCcEEecC
Confidence 999999999999999999999999999998765 6789999999999999999999999999999999999999999984
No 4
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=100.00 E-value=1.7e-69 Score=510.42 Aligned_cols=292 Identities=27% Similarity=0.468 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCC
Q psy18115 17 DLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRS 96 (365)
Q Consensus 17 ~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~ 96 (365)
-+||++||+|++|++++++.+.+.++||+++.||++.++..+++.|+. .+||+++|.|+.++||+|..+
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i~~G~se~el~~~~e~~~~~~g~~-----------~aFp~~vs~n~~~~H~~p~~~ 70 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAE-----------PAFPCNISINECAAHFTPKAG 70 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCC-----------CCCCcceecCCEeeCCCCCCC
Confidence 378999999999999999999999999999999999999999988653 468999999999999999865
Q ss_pred CCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q psy18115 97 DPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKIC 176 (365)
Q Consensus 97 ~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~ 176 (365)
+ +++|++||+|+||+|++++||++|++|||++|+. ++++++++++|++++++.+|||++++||++++++++
T Consensus 71 d-~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~~--------~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi 141 (295)
T TIGR00501 71 D-KTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQ--------YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVI 141 (295)
T ss_pred c-CccCCCCCEEEEEEeEEECCEEEEEEEEEEeCcH--------HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4 4789999999999999999999999999999953 688999999999999999999999999999999999
Q ss_pred HhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecCCccc
Q psy18115 177 KDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENY 256 (365)
Q Consensus 177 ~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~ 256 (365)
+++||.++.+++|||||++.+|+++.+ ++... ..+.+|++||||+|||++++|.|++++.+ .++||++.. ++
T Consensus 142 ~~~G~~~i~~~~GHgig~~~~h~g~~i-p~i~~-----~~~~~le~GmV~aIEP~~~~G~G~v~~~~-~~~iy~~~~-~~ 213 (295)
T TIGR00501 142 ESYGVKPISNLTGHSMAPYRLHGGKSI-PNVKE-----RDTTKLEEGDVVAIEPFATDGVGYVTDGG-EVSIYAFLA-ER 213 (295)
T ss_pred HHcCCeeecCCCCcceecccccCCCcc-CeecC-----CCCCEeCCCCEEEEceeEECCcCeEecCC-CeEEEeECC-CC
Confidence 999999999999999997655544433 33221 24678999999999999999999998876 699999853 38
Q ss_pred cccchhHHHHHHHHHhhCCcccccccccCChh--hhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCceEe
Q psy18115 257 QLKLKASRAFFGEVQKKYSNMPFNLRFFENES--QARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRI 334 (365)
Q Consensus 257 ~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~--~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~l 334 (365)
++|+++||++|++|+++|++|||+.|||++.+ ++++++.+|+++|+|.|||||++++|++||||||||+|+++|++++
T Consensus 214 ~~k~~~~r~~l~~i~~~~~~~pF~~r~l~~~~~~~~~~~l~~~~~~~~~~~yp~l~e~~g~~vaq~~~Tv~v~~~g~~~~ 293 (295)
T TIGR00501 214 PVRLDSARNLLKTIDENYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEISGGYVAQWEHTILVEEHGKEVT 293 (295)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcchhHhcccchhHHHHHHHHHHHCCCccCCCccEeeCCCEEEEEEEEEEECCCccEEc
Confidence 99999999999999999999999999998865 4789999999999999999999999999999999999999999999
Q ss_pred cC
Q psy18115 335 TG 336 (365)
Q Consensus 335 T~ 336 (365)
|.
T Consensus 294 t~ 295 (295)
T TIGR00501 294 TK 295 (295)
T ss_pred CC
Confidence 84
No 5
>KOG2776|consensus
Probab=100.00 E-value=9e-69 Score=491.18 Aligned_cols=364 Identities=63% Similarity=0.967 Sum_probs=347.7
Q ss_pred CCCCCCC-chhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc
Q psy18115 1 MGDKNDD-KNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP 79 (365)
Q Consensus 1 ~~~~~~~-~~~~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p 79 (365)
|++.+.. .+.|++|-++..+.+||-||+|++.+++.+.+.++||++..|||..++.+|.++.++.|+..+.+.+|++||
T Consensus 1 mss~d~~~~~~d~tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfP 80 (398)
T KOG2776|consen 1 MSSHDETITEKDKTIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFP 80 (398)
T ss_pred CCcccccccccccccccHHHHhhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHHHHHHHHhhhhhhhcccccc
Confidence 6666644 678899999999999999999999999999999999999999999999999999888898877778999999
Q ss_pred eeeccCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhc
Q psy18115 80 TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLM 159 (365)
Q Consensus 80 ~~~s~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~l 159 (365)
+|+|+|+++|||+|..+|.+..|++||+|+||+|+++|||.+-+++|++|++.++.|++++.++++.+++.|.+++++.+
T Consensus 81 T~Isvnncv~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rll 160 (398)
T KOG2776|consen 81 TSISVNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLL 160 (398)
T ss_pred ceecccceeeccCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999998878999999999999999999999999999999998888899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCc
Q psy18115 160 KPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVG 239 (365)
Q Consensus 160 kPG~~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~ 239 (365)
+||++...|.+++.+++.+++|.++.+...|..-+.+++|++.|+.|++++++...+...++.+.|++++..+++|.|+.
T Consensus 161 kpgn~n~~vT~~i~k~aas~~c~pVegmlshql~~~~idGeKtIi~n~sdqq~~~~e~~~fe~~Evya~Di~~stg~~~~ 240 (398)
T KOG2776|consen 161 KPGNTNTQVTRAIVKTAASYGCKPVEGMLSHQLKQHVIDGEKTIIQNPSDQQKKEHEKTEFEEHEVYAIDILVSTGEGSP 240 (398)
T ss_pred CCCCCCchhhHHHHHHHHHhCCcccccchhHHHHhhhhcCCceEecCcchhhhccccccccccceeEEEEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999998887788899999999999999999999988
Q ss_pred ccCCCc-eeEEecC-CccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCee
Q psy18115 240 REQDTR-VTIYKKT-EENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETV 317 (365)
Q Consensus 240 ~~~~~~-~~iy~~~-~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~ 317 (365)
++.+++ +++|.++ ..+|+||||.||++|++|+++|+.|||++|.|..+.+.++|+.||.+|+++.|||||++++|+++
T Consensus 241 K~~~~~~~t~y~kd~~~~y~LKlKaSR~~~seI~k~~g~~PF~~rs~~~e~r~rmGl~Ec~~~~ll~p~pVl~~kp~~~v 320 (398)
T KOG2776|consen 241 KEGDDRAPTIYYKDESVSYMLKLKASRALLSEIKKKFGVMPFTLRSLEEEFRARLGLVECTNHGLLVPYPVLYEKPGEFV 320 (398)
T ss_pred cccccccceeEEeccchHHHHHHHHHHHHHHHHHhhcCcccccccchhhHHHhhhhhHHhccCccccccceeecCCcchh
Confidence 887776 9999886 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEECCCCceEecCCCCCCCCccCCCcCCcHHHHHHhhccCC
Q psy18115 318 AQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSSDL 364 (365)
Q Consensus 318 aq~e~Tv~vt~~g~~~lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (365)
|||++||++.+||...||+.|+++.+++|+++|+|+|++.+|..+.+
T Consensus 321 aqfk~TvllmPng~~~l~~~p~~~~~~~sd~~Ved~e~~alL~~~i~ 367 (398)
T KOG2776|consen 321 AQFKFTVLLMPNGSLRLTGSPFKPDKYKSDLSVEDPELKALLCSGIK 367 (398)
T ss_pred hheeeEEEeccCCCccccCCCCCcccccccccccCHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999854
No 6
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=3.2e-68 Score=501.32 Aligned_cols=288 Identities=28% Similarity=0.478 Sum_probs=261.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPD 99 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~ 99 (365)
+++||+|++|++++++++.+.++||+|+.||++.+++.+.+.|+ +.+||+++|.|+.++||+|+.++ +
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~-----------~~afp~~is~n~~~~H~~p~~~d-~ 68 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGA-----------GPAFPVNLSINECAAHYTPNAGD-D 68 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCC-----------CCCCCceeccCCEeeCCCCCCCC-C
Confidence 36899999999999999999999999999999999999988763 46689999999999999998544 5
Q ss_pred ccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhc
Q psy18115 100 LILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDF 179 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~ 179 (365)
++|++||+|+||+|++++||++|++|||++|+ +++++++++++|++++++.+|||++++||+++++++++++
T Consensus 69 ~~l~~GDvV~iD~G~~~dGY~sD~arT~~vg~--------~~~~l~ea~~~A~~~ai~~ikPG~~~~dV~~ai~~~i~~~ 140 (291)
T cd01088 69 TVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP--------KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESY 140 (291)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEecCh--------hHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999985 4688999999999999999999999999999999999999
Q ss_pred CCccccCccccccccc-eecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecCCccccc
Q psy18115 180 ECKPLEGMLSHQLKQG-QIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQL 258 (365)
Q Consensus 180 G~~~~~~~~GHgIG~~-~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~l 258 (365)
||.++.+++|||||++ +|+ ++ .+++... ..+.+|+|||||+|||++++|.|++++ +.+++||++.... ++
T Consensus 141 G~~~~~~~~GHgig~~~~h~-~~-~ip~~~~-----~~~~~le~gmV~aIEp~~s~G~G~v~~-~~~~~iy~~~~~~-~~ 211 (291)
T cd01088 141 GFKPIRNLTGHSIERYRLHA-GK-SIPNVKG-----GEGTRLEEGDVYAIEPFATTGKGYVHD-GPECSIYMLNRDK-PL 211 (291)
T ss_pred CCEEeecCCccCccCccccC-CC-ccCccCC-----CCCCEeCCCCEEEEceeEECCCCeeec-CCceEEEEEcCCC-CC
Confidence 9999999999999975 554 33 3333322 246799999999999999999999987 4589999985322 89
Q ss_pred cchhHHHHHHHHHhhCCcccccccccCCh--hhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCceEecC
Q psy18115 259 KLKASRAFFGEVQKKYSNMPFNLRFFENE--SQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITG 336 (365)
Q Consensus 259 k~~~~~~~~~~i~~~~~~~pF~~r~l~~~--~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~ 336 (365)
|++++|++|++|+++|++|||+.|||++. +++++++.||+++|+|.|||||++++|++||||||||+|+++|++++|.
T Consensus 212 ~~~~~r~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~~~y~~l~e~~g~~vaq~~~T~~v~~~g~~~~t~ 291 (291)
T cd01088 212 RLPRARKLLDVIYENFGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTIIVREDGKEVTTR 291 (291)
T ss_pred CCHHHHHHHHHHHHHCCCCCcChHHhhccchhhHHHHHHHHHHCCCcccCCccEeeCCCeEEEEEEEEEECCCCcEecCC
Confidence 99999999999999999999999999997 7889999999999999999999999999999999999999999999984
No 7
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-62 Score=444.91 Aligned_cols=249 Identities=27% Similarity=0.393 Sum_probs=226.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCC
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFS 92 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~ 92 (365)
.+|+++||++||+||+|++++++++.+.++||+|..||+.+++++++++|+. +...++ +||+||+|+|+|++++||+
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~--pa~~gy-~g~~~~~ciSvNe~v~Hgi 80 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAY--PAFLGY-KGFPFPTCISVNEVVAHGI 80 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCce--ehhccC-cCCCcceEeehhheeeecC
Confidence 4899999999999999999999999999999999999999999999997664 444443 7899999999999999999
Q ss_pred CCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q psy18115 93 PLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTV 172 (365)
Q Consensus 93 p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i 172 (365)
|+ + +++|++||+|+||+|+++|||++|.++||.+|+.++ +..++|++++++|++++|+.+|||+++++|+++|
T Consensus 81 P~--d-~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~----~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aI 153 (255)
T COG0024 81 PG--D-KKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSD----EDAKRLLEATKEALYAGIEAVKPGARLGDIGRAI 153 (255)
T ss_pred CC--C-CcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCCh----HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99 3 689999999999999999999999999999997652 4678899999999999999999999999999999
Q ss_pred HHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCC-CceeEEec
Q psy18115 173 QKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQD-TRVTIYKK 251 (365)
Q Consensus 173 ~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~-~~~~iy~~ 251 (365)
+++++++||+++++|+|||||+.+|+ .|.++|++... ...+|+||||||||||+++|.+.+.... ++|++.
T Consensus 154 q~~~~~~G~~vVr~~~GHgig~~~He--~p~ip~y~~~~----~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~-- 225 (255)
T COG0024 154 QEYAESRGFSVVRNLTGHGIGRELHE--EPSIPNYGKDG----TGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLV-- 225 (255)
T ss_pred HHHHHHcCCEEeecccCCccCcccCC--CCeeccccCCC----CCcccCCCCEEEEeeEEEcCCCceEecCCCCeEEE--
Confidence 99999999999999999999999995 56777765432 3479999999999999999999987776 677754
Q ss_pred CCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCc
Q psy18115 252 TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGP 331 (365)
Q Consensus 252 ~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~ 331 (365)
++||+++|||||||+||++|+
T Consensus 226 -----------------------------------------------------------t~d~~~~aq~EHTv~Vt~~g~ 246 (255)
T COG0024 226 -----------------------------------------------------------TKDGSLSAQFEHTVIVTEDGC 246 (255)
T ss_pred -----------------------------------------------------------eCCCCEEeEEEEEEEEeCCCc
Confidence 799999999999999999999
Q ss_pred eEecCCC
Q psy18115 332 HRITGIP 338 (365)
Q Consensus 332 ~~lT~~~ 338 (365)
++||..+
T Consensus 247 eilT~~~ 253 (255)
T COG0024 247 EILTLRP 253 (255)
T ss_pred EEeeCCC
Confidence 9999765
No 8
>KOG2738|consensus
Probab=100.00 E-value=4.9e-56 Score=397.84 Aligned_cols=247 Identities=18% Similarity=0.240 Sum_probs=227.2
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccC
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHF 91 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~ 91 (365)
..|.++++|++||+||+++.++++.+...++||+|+.||+..+.+++.++|+ |+...+| .+|+-.+|.|+|+++|||
T Consensus 114 i~i~~~e~ie~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~--YPSPLnY-y~FPKS~CTSVNEviCHG 190 (369)
T KOG2738|consen 114 IKILDPEGIEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGA--YPSPLNY-YGFPKSVCTSVNEVICHG 190 (369)
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCC--cCCCccc-CCCchhhhcchhheeecC
Confidence 3588999999999999999999999999999999999999999999999876 6666665 566666999999999999
Q ss_pred CCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q psy18115 92 SPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT 171 (365)
Q Consensus 92 ~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~ 171 (365)
+|. .|+|++||+|.||+.+.++||++|..+||+||+.+ ++.++|++.++++++.||+.+|||+++.+|++.
T Consensus 191 IPD----~RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vd-----e~~k~LVkvT~EcL~kaI~~~kpGv~freiG~i 261 (369)
T KOG2738|consen 191 IPD----SRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVD-----EKAKKLVKVTRECLEKAIAIVKPGVSFREIGNI 261 (369)
T ss_pred CCC----cCcCCCCCEEeEEEEEEeccccCccccceEeeccC-----HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 999 69999999999999999999999999999999986 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEec
Q psy18115 172 VQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKK 251 (365)
Q Consensus 172 i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~ 251 (365)
|++.+.++||++++.|+|||||..+|- .|.++++... ....++++||+||||||++.|.-.-..++|+||..
T Consensus 262 I~kha~~~g~sVVr~ycGHGig~~FH~--~PnipHya~n----~a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~v-- 333 (369)
T KOG2738|consen 262 IQKHATKNGYSVVRSYCGHGIGRVFHC--APNIPHYAKN----KAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAV-- 333 (369)
T ss_pred HHHHhhhcCceeehhhhcccccccccc--CCCchhhccc----CCcceeecCceEEeeeeecccccccccCCCCceEE--
Confidence 999999999999999999999999995 5667776542 25679999999999999999988888888888885
Q ss_pred CCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCc
Q psy18115 252 TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGP 331 (365)
Q Consensus 252 ~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~ 331 (365)
+.||..+||||||+|||+.|+
T Consensus 334 -----------------------------------------------------------TaDG~~sAQFEhTlLVT~tG~ 354 (369)
T KOG2738|consen 334 -----------------------------------------------------------TADGKRSAQFEHTLLVTETGC 354 (369)
T ss_pred -----------------------------------------------------------ecCCceecceeeEEEEecccc
Confidence 789999999999999999999
Q ss_pred eEecCC
Q psy18115 332 HRITGI 337 (365)
Q Consensus 332 ~~lT~~ 337 (365)
||||.+
T Consensus 355 EILT~r 360 (369)
T KOG2738|consen 355 EILTKR 360 (369)
T ss_pred eehhcc
Confidence 999985
No 9
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=3.7e-53 Score=410.58 Aligned_cols=248 Identities=16% Similarity=0.191 Sum_probs=217.1
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCccccc
Q psy18115 11 EKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICH 90 (365)
Q Consensus 11 ~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H 90 (365)
...|||++||+.||+|++|++++++++.+.++||+|+.||++.+++++.++|+. +...++ .+|+..+|.|.|+.++|
T Consensus 134 ~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~--ps~l~y-~~fp~svcts~N~~i~H 210 (396)
T PLN03158 134 SVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGY--PSPLNY-HFFPKSCCTSVNEVICH 210 (396)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCc--cccccc-cCCCceeeecccccccC
Confidence 358999999999999999999999999999999999999999999999888764 221111 23333378999999999
Q ss_pred CCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH
Q psy18115 91 FSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITD 170 (365)
Q Consensus 91 ~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~ 170 (365)
|+|+ +++|++||+|+||+|+.++||++|++|||++|+++ ++++++++++++|++++++++|||++++||++
T Consensus 211 gip~----~r~L~~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~-----~e~~~l~e~~~eal~~aI~~vkPGv~~~dI~~ 281 (396)
T PLN03158 211 GIPD----ARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVD-----EASRQLVKCTYECLEKAIAIVKPGVRYREVGE 281 (396)
T ss_pred CCCC----CccCCCCCEEEEEEeEEECCEEEeEEeEEEcCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9998 78999999999999999999999999999999875 78999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEe
Q psy18115 171 TVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYK 250 (365)
Q Consensus 171 ~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~ 250 (365)
+++++++++||+++++++|||||+.+|+ .|.+.++... ....+|+||||||||||++.|......++|+||..
T Consensus 282 ~i~~~~~~~G~~~v~~~~GHGIG~~~He--~P~i~~~~~~----~~~~~l~~GMVfTIEP~i~~g~~~~~~~~d~wt~~- 354 (396)
T PLN03158 282 VINRHATMSGLSVVKSYCGHGIGELFHC--APNIPHYARN----KAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAV- 354 (396)
T ss_pred HHHHHHHHcCCCccCCccCCccccccCC--CCCCCcccCC----CCCCEecCCcEEEECCeeccCcccceecCCCceEE-
Confidence 9999999999999999999999999996 4666554321 13468999999999999998876666666667664
Q ss_pred cCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCC
Q psy18115 251 KTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNG 330 (365)
Q Consensus 251 ~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g 330 (365)
+.+|..+|||||||+||++|
T Consensus 355 ------------------------------------------------------------t~dG~~~aq~E~tvlVTe~G 374 (396)
T PLN03158 355 ------------------------------------------------------------TADGKRSAQFEHTLLVTETG 374 (396)
T ss_pred ------------------------------------------------------------ecCCceeeEeeeEEEEeCCc
Confidence 57899999999999999999
Q ss_pred ceEecCC
Q psy18115 331 PHRITGI 337 (365)
Q Consensus 331 ~~~lT~~ 337 (365)
+++||.+
T Consensus 375 ~EiLT~~ 381 (396)
T PLN03158 375 VEVLTAR 381 (396)
T ss_pred ceECCCC
Confidence 9999973
No 10
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=381.34 Aligned_cols=245 Identities=18% Similarity=0.240 Sum_probs=213.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCC
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFS 92 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~ 92 (365)
.||||+||++||+|++|++++++++.+.++||+||.||++.+++.+.++|+.... .+ +.++++++|++.|+..+|+.
T Consensus 3 ~iKs~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~~G~~~~~--~~-~~~~~~~i~~g~n~~~~H~~ 79 (248)
T PRK12897 3 TIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQ--KG-YNGYPYAICASVNDEMCHAF 79 (248)
T ss_pred eeCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc--cc-cCCCCcceEeccCCEeecCC
Confidence 6999999999999999999999999999999999999999999999998875211 11 24566668889999999999
Q ss_pred CCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHH
Q psy18115 93 PLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTV 172 (365)
Q Consensus 93 p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i 172 (365)
|+ +++|++||+|++|+|+.++||++|++|||++|+++ ++++++|+++++|++++++++|||++++||++++
T Consensus 80 p~----~~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s-----~~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~ 150 (248)
T PRK12897 80 PA----DVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVS-----DEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAI 150 (248)
T ss_pred CC----CcccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCC-----HHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHH
Confidence 98 68999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred HHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecC
Q psy18115 173 QKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKT 252 (365)
Q Consensus 173 ~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~ 252 (365)
+++++++||....+++|||||+.+|| .|.+.++... .+..+|+|||||||||+++.|.+......++|+.
T Consensus 151 ~~~~~~~g~~~~~~~~GHgiGl~~hE--~P~i~~~~~~----~~~~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~~~---- 220 (248)
T PRK12897 151 ESYVANEGFSVARDFTGHGIGKEIHE--EPAIFHFGKQ----GQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTA---- 220 (248)
T ss_pred HHHHHHcCCccCCCeEECccCCcccC--CCccCCCCCC----CCCCCcCCCCEEEECCeEecCCCceEECCCCcEE----
Confidence 99999999998899999999999996 4555432211 2456899999999999999887665444444544
Q ss_pred CccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCce
Q psy18115 253 EENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPH 332 (365)
Q Consensus 253 ~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~ 332 (365)
.+.+|...+|+||||+||++|++
T Consensus 221 ---------------------------------------------------------~~~~g~~g~r~edtv~Vt~~G~e 243 (248)
T PRK12897 221 ---------------------------------------------------------RTMDGKLSAQYEHTIAITKDGPI 243 (248)
T ss_pred ---------------------------------------------------------EcCCCCeEeecceEEEEeCCccE
Confidence 24678899999999999999999
Q ss_pred EecC
Q psy18115 333 RITG 336 (365)
Q Consensus 333 ~lT~ 336 (365)
+||.
T Consensus 244 ~lt~ 247 (248)
T PRK12897 244 ILTK 247 (248)
T ss_pred Eeec
Confidence 9996
No 11
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=2.8e-51 Score=383.51 Aligned_cols=249 Identities=15% Similarity=0.180 Sum_probs=214.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccc-cccccccccCCccc--eeeccCcccc
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC-FKKIKDMKKGIAFP--TCISVNNCIC 89 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~-~~~~~~~~~g~~~p--~~~s~n~~~~ 89 (365)
.|||++||++||+|++|+++++.++.+.++||+||.||++.++.++++.|+.. +.+..+ ...+|| +|.|.|..++
T Consensus 3 ~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~~g~~~~~~G~~~--~~~~f~~~v~~G~n~~~~ 80 (286)
T PRK07281 3 TLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDG--AMMDYPYATCCGLNDEVA 80 (286)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCcccccCCCC--cccCCCcceEEecccccc
Confidence 58999999999999999999999999999999999999999999999887641 222110 123455 7889999999
Q ss_pred cCCCCCCCCCccccCCCEEEEEeee---------------------------EECcEEEEEEEEEEECCccccccchHHH
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGA---------------------------HVDGFIAVVAHTIVVGAAKHRKCMGKKA 142 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~---------------------------~~~GY~aD~~RT~~vG~~~~~~~t~~~~ 142 (365)
|+.|+ +++|++||+|+||+|+ .|+||++|++|||++|+++ ++++
T Consensus 81 H~~p~----~~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~~gy~~D~~rT~~vG~~~-----~~~~ 151 (286)
T PRK07281 81 HAFPR----HYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESYRGGLADSCWAYAVGTPS-----DEVK 151 (286)
T ss_pred CCCCC----CcCcCCCCEEEEEecccccccccccccccccccccccccccccccCCEEeeeEEEEECCCCC-----HHHH
Confidence 99998 7899999999999997 4999999999999999876 7899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeec
Q psy18115 143 NAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFET 222 (365)
Q Consensus 143 ~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~ 222 (365)
++++++++|++++++.+|||++++||++++++++++.||..+.+++|||||+.+|| .|.+.++... +.+.+|+|
T Consensus 152 ~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~~~GHGIGl~~hE--~P~i~~~~~~----~~~~~Le~ 225 (286)
T PRK07281 152 NLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHE--EPMVPNYGTA----GRGLRLRE 225 (286)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCCeeeeeCCCccCC--CCcCCCcccC----CCCCEECC
Confidence 99999999999999999999999999999999999999998889999999999995 5665543211 25678999
Q ss_pred CcEEEEeeeeecCCCCcc-cCCCceeEEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcC
Q psy18115 223 NEVYAMDVLVSTGDGVGR-EQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHK 301 (365)
Q Consensus 223 GmV~tIEP~i~~g~g~~~-~~~~~~~iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~ 301 (365)
||||+|||+++.|.+.+. ..+++|+++
T Consensus 226 GMV~tiEPgiy~~~~~~~~~~~~gw~~~---------------------------------------------------- 253 (286)
T PRK07281 226 GMVLTIEPMINTGTWEIDTDMKTGWAHK---------------------------------------------------- 253 (286)
T ss_pred CCEEEECCeeEcCCcceecccCCCceEE----------------------------------------------------
Confidence 999999999998765543 345567665
Q ss_pred ccccccceeecCCCeeEEEEEEEEECCCCceEecCCCC
Q psy18115 302 LIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPF 339 (365)
Q Consensus 302 ~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~~~~ 339 (365)
+.+|...+|+||||+||++|+++||..+.
T Consensus 254 ---------~~~g~~gvr~EdtvlVT~~G~e~LT~~~~ 282 (286)
T PRK07281 254 ---------TLDGGLSCQYEHQFVITKDGPVILTSQGE 282 (286)
T ss_pred ---------ecCCCcEEEeccEEEEeCCcceECCCCCc
Confidence 56789999999999999999999998664
No 12
>KOG2775|consensus
Probab=100.00 E-value=3.5e-51 Score=366.63 Aligned_cols=302 Identities=25% Similarity=0.423 Sum_probs=266.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCC
Q psy18115 16 EDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLR 95 (365)
Q Consensus 16 s~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~ 95 (365)
..+...-+|+|+++..++.+.+...|+|||+..|||..++...++.-.+ .+...|++||++.|.|++++||+|+.
T Consensus 81 ~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e-----~gl~aGi~FPtG~SlN~cAAHyTpNa 155 (397)
T KOG2775|consen 81 ESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILE-----NGLNAGIGFPTGCSLNHCAAHYTPNA 155 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHh-----ccccccccCCCcccccchhhhcCCCC
Confidence 3446678999999999999999999999999999999987655543221 12246899999999999999999999
Q ss_pred CCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q psy18115 96 SDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKI 175 (365)
Q Consensus 96 ~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~ 175 (365)
++. .+|+.+|+.+||+|.+++|-+.|++.|+.+.+. ...|+.++++|...+|+.+.-.++++||+++|+++
T Consensus 156 Gd~-tVLqydDV~KiDfGthi~GrIiDsAFTv~F~p~--------~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEV 226 (397)
T KOG2775|consen 156 GDK-TVLKYDDVMKIDFGTHIDGRIIDSAFTVAFNPK--------YDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEV 226 (397)
T ss_pred CCc-eeeeecceEEEeccccccCeEeeeeeEEeeCcc--------ccHHHHHHHHHHhhhhhhcCceeeehhhhHHHHHH
Confidence 885 899999999999999999999999999999865 45689999999999999999999999999999999
Q ss_pred HHhcCC---------ccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCce
Q psy18115 176 CKDFEC---------KPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRV 246 (365)
Q Consensus 176 ~~~~G~---------~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~ 246 (365)
+++|.+ ++++++.||+|+.+-+++++.+.. .. -++..++++|.+|+||.|-++|.|++.+.. .+
T Consensus 227 meSyEvEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPi-Vk-----gge~trmee~e~yAIETFgSTGkG~v~ddm-ec 299 (397)
T KOG2775|consen 227 MESYEVEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPI-VK-----GGEQTRMEEGEIYAIETFGSTGKGYVHDDM-EC 299 (397)
T ss_pred hhheEEEeCCceecceeccccCCCcccceEeecCcccce-ec-----CCcceeecCCeeEEEEeeccCCcceecCCc-cc
Confidence 999753 467899999999998888876532 11 136789999999999999999999996655 68
Q ss_pred eEEecC-C-ccccccchhHHHHHHHHHhhCCcccccccccCChh--hhhhhHHHHHHcCccccccceeecCCCeeEEEEE
Q psy18115 247 TIYKKT-E-ENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENES--QARLGINECVKHKLIEPFQVLYEKPGETVAQFKF 322 (365)
Q Consensus 247 ~iy~~~-~-~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~--~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~ 322 (365)
++|.++ + ...+++++.++.||+.|+++|+++|||.|||+..+ ++.+.++.|.++|+|.|||+|.+.+|+++|||||
T Consensus 300 SHymkn~~~~~vplrl~~~K~ll~~I~knfgTLaFcrR~lDrlGetKyLmAlk~Lc~~Giv~pyPPLcDi~G~ytAQfEH 379 (397)
T KOG2775|consen 300 SHYMKNFELGHVPLRLQRSKGLLNTIDKNFGTLAFCRRWLDRLGETKYLMALKNLCDMGIVQPYPPLCDIKGSYTAQFEH 379 (397)
T ss_pred chhhhhccccccccccHHHHHHHHHHhhccccccccHHHHHHhhhHHHHHHHHhhhhcccccCCCcccccCcceeeeece
Confidence 999885 3 47789999999999999999999999999999866 7889999999999999999999999999999999
Q ss_pred EEEECCCCceEecCCC
Q psy18115 323 TVLLMPNGPHRITGIP 338 (365)
Q Consensus 323 Tv~vt~~g~~~lT~~~ 338 (365)
||+..+.|.+|++.+.
T Consensus 380 TIll~pt~KEVvsrGD 395 (397)
T KOG2775|consen 380 TILLSPTGKEVVSRGD 395 (397)
T ss_pred eeEecchhcchhcccC
Confidence 9999999999998753
No 13
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=6.3e-50 Score=369.60 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=213.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCccccc
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCICH 90 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~H 90 (365)
+|||++||++||+|++|++++++++.+.++||++|.||++.++.++.+.|+..... ...+|| ++.|.|..++|
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i~~G~tE~el~~~~~~~~~~~G~~~~~~-----~~~~~~~~~~~~~n~~~~H 76 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFL-----GYYGFPGSVCISVNEVVIH 76 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHCCCCcccc-----CCCCCCceeEeccccEEEe
Confidence 69999999999999999999999999999999999999999999999988753211 112344 67889999999
Q ss_pred CCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH
Q psy18115 91 FSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITD 170 (365)
Q Consensus 91 ~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~ 170 (365)
+.|+ +++|++||+|++|+|+.|+||++|++|||++|+++ +++++++++++++++++++.+|||++++||++
T Consensus 77 ~~~~----~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~-----~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~ 147 (247)
T TIGR00500 77 GIPD----KKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKIS-----PEAEKLLECTEESLYKAIEEAKPGNRIGEIGA 147 (247)
T ss_pred cCCC----CcccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9998 78999999999999999999999999999999865 79999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEe
Q psy18115 171 TVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYK 250 (365)
Q Consensus 171 ~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~ 250 (365)
+++++++++||....+++|||||+.+|| .|.++++... .++.+|++||||+|||+++.+.+.+...+++|++.
T Consensus 148 ~~~~~~~~~g~~~~~~~~GHgiG~~~~e--~p~i~~~~~~----~~~~~l~~gmv~~iEp~i~~~~~~~~~~~~~~~~~- 220 (247)
T TIGR00500 148 AIQKYAEAKGFSVVREYCGHGIGRKFHE--EPQIPNYGKK----FTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVK- 220 (247)
T ss_pred HHHHHHHHcCCEeccCccCCccCcccCC--CCccCCcCcC----CCCCEecCCCEEEEeeEEEcCCCcEEECCCCCEEE-
Confidence 9999999999998888999999999996 4555443221 25689999999999999999988876666666654
Q ss_pred cCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCC
Q psy18115 251 KTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNG 330 (365)
Q Consensus 251 ~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g 330 (365)
.++|...+|+||||+||++|
T Consensus 221 ------------------------------------------------------------~~~~~~g~ried~v~Vt~~G 240 (247)
T TIGR00500 221 ------------------------------------------------------------TKDGSLSAQFEHTIVITDNG 240 (247)
T ss_pred ------------------------------------------------------------ccCCCeEEEEeEEEEEcCCc
Confidence 35678889999999999999
Q ss_pred ceEecCC
Q psy18115 331 PHRITGI 337 (365)
Q Consensus 331 ~~~lT~~ 337 (365)
+++||.+
T Consensus 241 ~e~Lt~~ 247 (247)
T TIGR00500 241 PEILTER 247 (247)
T ss_pred cEEccCC
Confidence 9999964
No 14
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=4.6e-50 Score=377.27 Aligned_cols=249 Identities=19% Similarity=0.320 Sum_probs=212.0
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcc
Q psy18115 10 EEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNC 87 (365)
Q Consensus 10 ~~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~ 87 (365)
....|||++||++||+|++|++++++++.+.++||+||.||++.++.++.+.|+.. ....+ .+.+|| +|.|.|+.
T Consensus 39 ~~i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~~~~~G~~~--~~~~~-~~~~f~~~v~~g~n~~ 115 (291)
T PRK12318 39 YDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIP--APLNY-GSPPFPKTICTSLNEV 115 (291)
T ss_pred CceEECCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCCc--ccccc-CCCCCCcceEeeccce
Confidence 34579999999999999999999999999999999999999998888887776531 11111 233465 78899999
Q ss_pred cccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhh
Q psy18115 88 ICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYL 167 (365)
Q Consensus 88 ~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~d 167 (365)
++|+.|+ +++|++||+|++|+|+.++||++|++|||++|+++ ++++++++++++|++++++.+|||++++|
T Consensus 116 ~~H~~p~----~~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~-----~~~~~~~~~~~~a~~~~i~~~rpG~~~~d 186 (291)
T PRK12318 116 ICHGIPN----DIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVS-----EIKKKVCQASLECLNAAIAILKPGIPLYE 186 (291)
T ss_pred eecCCCC----CCccCCCCEEEEEEeEEECcEEEEEEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999998 68999999999999999999999999999999875 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecC-CCCcccCCCce
Q psy18115 168 ITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTG-DGVGREQDTRV 246 (365)
Q Consensus 168 I~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g-~g~~~~~~~~~ 246 (365)
|+++++++++++||....+++|||||+.+|| .|.+.+... ..+.+|++||||+|||+++.+ .+.+....++|
T Consensus 187 v~~a~~~~~~~~G~~~~~~~~GHgIGl~~hE--~P~i~~~~~-----~~~~~L~~GMV~~iEP~i~~~~~~g~~~~~~~~ 259 (291)
T PRK12318 187 IGEVIENCADKYGFSVVDQFVGHGVGIKFHE--NPYVPHHRN-----SSKIPLAPGMIFTIEPMINVGKKEGVIDPINHW 259 (291)
T ss_pred HHHHHHHHHHHcCCccCCCcccCCcCccccC--CCcccCcCC-----CCCCEeCCCCEEEECCEEEcCCCceEEecCCCc
Confidence 9999999999999998889999999999996 566554321 245789999999999999865 33333334455
Q ss_pred eEEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEE
Q psy18115 247 TIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLL 326 (365)
Q Consensus 247 ~iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~v 326 (365)
++- ..+|..++||||||+|
T Consensus 260 ~~~-------------------------------------------------------------~~~g~~~~~~edtv~V 278 (291)
T PRK12318 260 EAR-------------------------------------------------------------TCDNQPSAQWEHTILI 278 (291)
T ss_pred EEE-------------------------------------------------------------ecCCCeeeeeeeEEEE
Confidence 542 4689999999999999
Q ss_pred CCCCceEecCCC
Q psy18115 327 MPNGPHRITGIP 338 (365)
Q Consensus 327 t~~g~~~lT~~~ 338 (365)
|++|+++||..|
T Consensus 279 Te~G~e~LT~~~ 290 (291)
T PRK12318 279 TETGYEILTLLD 290 (291)
T ss_pred cCCcceeCCCCC
Confidence 999999999876
No 15
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=6.2e-50 Score=371.29 Aligned_cols=248 Identities=20% Similarity=0.242 Sum_probs=216.4
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccC
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHF 91 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~ 91 (365)
..|||++||++||+|++|++++++++.+.++||+||.||+..+++.+.+.|+..... . ..+|+..+|.|.|+.++|+
T Consensus 8 ~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~~~~--~-~~~~~~~~~~~~n~~~~h~ 84 (255)
T PRK12896 8 MEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPE--G-YYGFPGSTCISVNEEVAHG 84 (255)
T ss_pred eeECCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHCCCEeCcc--c-CCCCCcceEecCCCeeEec
Confidence 369999999999999999999999999999999999999999999999888752111 0 1233333788899999999
Q ss_pred CCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q psy18115 92 SPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT 171 (365)
Q Consensus 92 ~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~ 171 (365)
.|+ +++|++||+|++|+|+.++||++|++|||++|+++ ++++++++++++|++++++.+|||+++++|+++
T Consensus 85 ~p~----~~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~-----~~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~ 155 (255)
T PRK12896 85 IPG----PRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVS-----EEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRA 155 (255)
T ss_pred CCC----CccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 998 68999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEec
Q psy18115 172 VQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKK 251 (365)
Q Consensus 172 i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~ 251 (365)
+++++++.||....+++|||||+.+||. +.++.++... .++.+|++||||+|||+++.|.+++...+++|++.
T Consensus 156 ~~~~~~~~G~~~~~~~~GHgiG~~~he~-p~~~~~~~~~----~~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~~~~-- 228 (255)
T PRK12896 156 IEDFAKKNGYSVVRDLTGHGVGRSLHEE-PSVILTYTDP----LPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVV-- 228 (255)
T ss_pred HHHHHHHcCCEeccCcccCCcCcccccC-CCccccCCCC----CCCCEecCCcEEEEeceEEcCCCceEEcCCCCEEE--
Confidence 9999999999888899999999999963 2243322111 25679999999999999999999998888888875
Q ss_pred CCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCc
Q psy18115 252 TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGP 331 (365)
Q Consensus 252 ~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~ 331 (365)
+.+|...+|+||||+||++|+
T Consensus 229 -----------------------------------------------------------~~~~~~~~~~edtv~vt~~G~ 249 (255)
T PRK12896 229 -----------------------------------------------------------TPDKSLSAQFEHTVVVTRDGP 249 (255)
T ss_pred -----------------------------------------------------------ecCCCeEEEEEEEEEEcCCcc
Confidence 467889999999999999999
Q ss_pred eEecCC
Q psy18115 332 HRITGI 337 (365)
Q Consensus 332 ~~lT~~ 337 (365)
++||.+
T Consensus 250 e~Lt~~ 255 (255)
T PRK12896 250 EILTDR 255 (255)
T ss_pred eecCCC
Confidence 999963
No 16
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=2.6e-48 Score=359.84 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=215.0
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccC
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHF 91 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~ 91 (365)
.+|||++||++||+|++|++++++++.+.++||+|+.||++.+...+.+.|+..... + ..+++..++.+.|+..+|+
T Consensus 3 ~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i~pG~se~ela~~~~~~~~~~G~~~~~~--~-~~~~~~~~~~g~~~~~~h~ 79 (252)
T PRK05716 3 ITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPL--G-YHGFPKSICTSVNEVVCHG 79 (252)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHCCCEeccc--C-CCCCCcCeEecccceeecC
Confidence 469999999999999999999999999999999999999999999998887652110 0 1233223677899999999
Q ss_pred CCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHH
Q psy18115 92 SPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDT 171 (365)
Q Consensus 92 ~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~ 171 (365)
.|+ +++|++||+|++|+|+.++||++|++|||++|+++ +++++++++++++++++++++|||++++||+++
T Consensus 80 ~~~----~~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~-----~~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~ 150 (252)
T PRK05716 80 IPS----DKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEIS-----PEDKRLCEVTKEALYLGIAAVKPGARLGDIGHA 150 (252)
T ss_pred CCC----CcccCCCCEEEEEEEEEECCEEEEeEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 988 78999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEec
Q psy18115 172 VQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKK 251 (365)
Q Consensus 172 i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~ 251 (365)
++++++++|+....+++|||||+.+|| .|.+.++... .++.+|+|||||+|||+++.+.+.++..+++|.+.
T Consensus 151 ~~~~~~~~g~~~~~~~~GHgiG~~~~e--~p~~~~~~~~----~~~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~~~~-- 222 (252)
T PRK05716 151 IQKYAEAEGFSVVREYCGHGIGRKFHE--EPQIPHYGAP----GDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVV-- 222 (252)
T ss_pred HHHHHHHcCCeeecCccccccCCccCC--CCccCcCCCC----CCCCEecCCCEEEEccEEEcCCCceEEcCCCCEEE--
Confidence 999999999998889999999999996 4555443221 35689999999999999999888776666666553
Q ss_pred CCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCc
Q psy18115 252 TEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGP 331 (365)
Q Consensus 252 ~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~ 331 (365)
.++|...+|+|+||+||++|+
T Consensus 223 -----------------------------------------------------------~~~g~~g~~~ed~v~Vt~~G~ 243 (252)
T PRK05716 223 -----------------------------------------------------------TKDGSLSAQYEHTVAVTEDGP 243 (252)
T ss_pred -----------------------------------------------------------ccCCCcEEeeeeEEEEcCCcc
Confidence 356788899999999999999
Q ss_pred eEecCCCC
Q psy18115 332 HRITGIPF 339 (365)
Q Consensus 332 ~~lT~~~~ 339 (365)
++||..|.
T Consensus 244 e~Lt~~~~ 251 (252)
T PRK05716 244 EILTLRPE 251 (252)
T ss_pred EEeeCCCC
Confidence 99998874
No 17
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=6.5e-44 Score=327.62 Aligned_cols=238 Identities=22% Similarity=0.307 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPD 99 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~ 99 (365)
|++||+|++|++++++++.+.++||+||.||++.+.+.+.+.|+..+.. . ..+++..++.|.|+..+|+.|+ +
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~~pG~tE~ev~~~~~~~~~~~G~~~~~~--~-~~~~~~~~~~~~~~~~~h~~~~----~ 73 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPL--G-YYGFPKSICTSVNEVVCHGIPD----D 73 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCCcccc--c-CCCCCcceecCCCCceeCCCCC----C
Confidence 6899999999999999999999999999999999999999988753211 0 1233344677889999999988 7
Q ss_pred ccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhc
Q psy18115 100 LILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDF 179 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~ 179 (365)
++|++||+|++|+|+.++||++|++|||++|+++ ++++++++++.++++++++++|||++++||++++++++++.
T Consensus 74 ~~l~~Gd~v~id~g~~~~GY~ad~~RT~~~G~~~-----~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~ 148 (238)
T cd01086 74 RVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVS-----EEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKN 148 (238)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999875 78999999999999999999999999999999999999999
Q ss_pred CCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecCCcccccc
Q psy18115 180 ECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLK 259 (365)
Q Consensus 180 G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~lk 259 (365)
|+....+++|||||+.+|| .|.+.++.. ..++.+|++||||+|||+++.+.+.+.....+|...
T Consensus 149 G~~~~~~~~GHgiG~~~~e--~p~~~~~~~----~~~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~~~~---------- 212 (238)
T cd01086 149 GYSVVREFGGHGIGRKFHE--EPQIPNYGR----PGTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVV---------- 212 (238)
T ss_pred CcceecCccccCCCCcccc--CCCcCCccC----CCCCCEecCCCEEEEeeEEECCCCceEECCCCCEEE----------
Confidence 9988788999999999996 344432211 135689999999999999998877765555444322
Q ss_pred chhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCceEecC
Q psy18115 260 LKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITG 336 (365)
Q Consensus 260 ~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~ 336 (365)
..+|...+|+|+||+||++|+++||.
T Consensus 213 ---------------------------------------------------~~~g~~g~~~edtv~Vte~G~e~Lt~ 238 (238)
T cd01086 213 ---------------------------------------------------TKDGSLSAQFEHTVLITEDGPEILTL 238 (238)
T ss_pred ---------------------------------------------------cCCCCEEEeeeeEEEEcCCcceeCCC
Confidence 35677889999999999999999984
No 18
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=1.3e-43 Score=344.64 Aligned_cols=198 Identities=15% Similarity=0.185 Sum_probs=171.0
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCccc
Q psy18115 11 EKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCI 88 (365)
Q Consensus 11 ~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~ 88 (365)
-+.|||++||++||+|++|++++++.+.+.++||+||.||++.++..+.+.|+. +.+|+ ++.+.|...
T Consensus 124 lR~iKs~~Ei~~~r~a~~i~~~~~~~~~~~i~~G~tE~e~~~~~~~~~~~~G~~----------~~~f~~iv~sG~~~~~ 193 (361)
T PRK09795 124 LRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAE----------KASFDTIVASGWRGAL 193 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHCCCC----------cCCCCeEEEEeccccc
Confidence 457999999999999999999999999999999999999999999999988764 33454 455678899
Q ss_pred ccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhH
Q psy18115 89 CHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLI 168 (365)
Q Consensus 89 ~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI 168 (365)
+|+.|+ +++|++||+|++|+|+.|+||++|++|||++|++.+..-..+++++|+++++|++++++++|||++++||
T Consensus 194 ph~~~~----~~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v 269 (361)
T PRK09795 194 PHGKAS----DKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQV 269 (361)
T ss_pred cCCCCC----CceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 999988 7899999999999999999999999999999753210000137899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcc-ccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 169 TDTVQKICKDFECKP-LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 169 ~~~i~~~~~~~G~~~-~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
++++++++++.||.. +.|.+|||||+.+|| .|.+. + .++.+|+|||||+|||++
T Consensus 270 ~~~~~~~~~~~g~~~~~~h~~GHgiGl~~he--~p~i~-~-------~~~~~l~~gmv~~iEpgi 324 (361)
T PRK09795 270 DDAARRVITEAGYGDYFGHNTGHAIGIEVHE--DPRFS-P-------RDTTTLQPGMLLTVEPGI 324 (361)
T ss_pred HHHHHHHHHHcCCCccCCCCCCccCCccccC--CCCcC-C-------CCCCCcCCCCEEEECCEE
Confidence 999999999999985 568899999999996 44432 2 256789999999999996
No 19
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=4.4e-43 Score=320.03 Aligned_cols=228 Identities=57% Similarity=0.883 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPD 99 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~ 99 (365)
+++||+|++|++++++++.+.++||+++.||+..++.++.+.....|........+++||+|++.|+..+|++|.+..++
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~n~~~~H~~p~~~~~~ 80 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPLKSDAT 80 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEeccCceeecCCCCCCCCC
Confidence 46899999999999999999999999999999999999988755544421112367899999999999999998643236
Q ss_pred ccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhc
Q psy18115 100 LILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDF 179 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~ 179 (365)
++|++||+|+||+|+.|+||++|++|||++|++++.+.+++++++++++++|++++++++|||++++||+++++++++++
T Consensus 81 ~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~ 160 (228)
T cd01089 81 YTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDY 160 (228)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999998763223358999999999999999999999999999999999999999
Q ss_pred CCccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCceeEEecCCcccccc
Q psy18115 180 ECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLK 259 (365)
Q Consensus 180 G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~lk 259 (365)
||.++.+++||++|..+.-++.+. .-...|++||||++||++
T Consensus 161 G~~~~~~~~~h~~g~~~~~~~~~~-----------~~~~~l~~gmvf~~ep~~--------------------------- 202 (228)
T cd01089 161 GCTPVEGVLSHQLKRVVSSGEGKA-----------KLVECVKHGLLFPYPVLY--------------------------- 202 (228)
T ss_pred CCEEecCccccCcCceEecCCCCc-----------cchhhccCCcccccceeE---------------------------
Confidence 999999999999998655322110 024579999999999995
Q ss_pred chhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEECCCCceEecC
Q psy18115 260 LKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITG 336 (365)
Q Consensus 260 ~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~ 336 (365)
..+|..++|||+||+||++|+++||+
T Consensus 203 ---------------------------------------------------~~~g~~~~~~~~Tv~vt~~G~e~lt~ 228 (228)
T cd01089 203 ---------------------------------------------------EKEGEVVAQFKLTVLLTPNGVTVLTG 228 (228)
T ss_pred ---------------------------------------------------ccCCCeEEEEEEEEEEcCCCCeeCCC
Confidence 25688889999999999999999995
No 20
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=1.6e-42 Score=331.28 Aligned_cols=192 Identities=16% Similarity=0.214 Sum_probs=164.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCc-cceeeccCccccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIA-FPTCISVNNCICH 90 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~-~p~~~s~n~~~~H 90 (365)
+.||||+||+.||+|++|+++++.++.+.++||+||.||++.+...+.+.|.. +++ +++..+..+..+|
T Consensus 93 R~iKs~~EI~~mr~A~~i~~~~~~~~~~~i~~G~tE~el~a~~~~~~~~~g~~----------~~~~~~~i~~G~~~~~h 162 (323)
T PRK15173 93 RVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET----------HFSRFHLISVGADFSPK 162 (323)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCC----------CCCCCcEEEECCCCccC
Confidence 47999999999999999999999999999999999999999987777665432 222 3433333445678
Q ss_pred CCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH
Q psy18115 91 FSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITD 170 (365)
Q Consensus 91 ~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~ 170 (365)
+.|+ ++.+++||+|++|+|+.|+||++|++|||++|+++ ++++++|++++++++++++++|||+++++|++
T Consensus 163 ~~~~----~~~l~~Gd~V~iD~g~~~~GY~aDitRT~~vG~p~-----~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~ 233 (323)
T PRK15173 163 LIPS----NTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPP-----EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFD 233 (323)
T ss_pred CCCC----CCccCCCCEEEEEeCccCCCEeeeeEEEEEcCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 8887 68999999999999999999999999999999875 78999999999999999999999999999999
Q ss_pred HHHHHHHhcCCc-cccCcccccccc--ceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 171 TVQKICKDFECK-PLEGMLSHQLKQ--GQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 171 ~i~~~~~~~G~~-~~~~~~GHgIG~--~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
++++++++.|+. ...+++|||+|+ .+|| .|.+.. .++.+|++||||+|||++
T Consensus 234 a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~E--~P~i~~--------~~~~~Le~GMV~tiEPgi 288 (323)
T PRK15173 234 STMEVIKKSGLPNYNRGHLGHGNGVFLGLEE--SPFVST--------HATESFTSGMVLSLETPY 288 (323)
T ss_pred HHHHHHHHcCCccccCCCCCCcCCCCCCcCC--CCCCCC--------CCCCccCCCCEEEECCEE
Confidence 999999999996 456889999997 6775 455431 145689999999999996
No 21
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=2.1e-42 Score=315.21 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc-eeeccCcccccCCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP-TCISVNNCICHFSPLRSDP 98 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p-~~~s~n~~~~H~~p~~~~~ 98 (365)
|++||+|++|++++++++.+.++||+||.||++.+.+.+.+.|+..+... .+ .+. .| +..+.|...+|+.|+
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i~pG~tE~ei~a~~~~~~~~~ga~~~~~~-~~-~~~-~~~v~~G~~~~~~H~~~~---- 73 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEV-EL-MDT-WTWFQSGINTDGAHNPVT---- 73 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCcc-cc-cCc-ceEEEeeccccccCCCCC----
Confidence 67999999999999999999999999999999999999988876422110 00 010 13 456789999999887
Q ss_pred CccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHh
Q psy18115 99 DLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKD 178 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~ 178 (365)
+++|++||+|.+|+|+.++||++|++|||++|+++ ++++++++++.+|++++++++|||++++||++++++++++
T Consensus 74 ~r~l~~GD~v~~d~g~~~~GY~ad~~RT~~vG~~~-----~~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~ 148 (228)
T cd01090 74 NRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVS-----DAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYRE 148 (228)
T ss_pred CcccCCCCEEEEEEeEEECCEeeeeEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999876 7999999999999999999999999999999999999999
Q ss_pred cCCccc-cCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeee
Q psy18115 179 FECKPL-EGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVS 233 (365)
Q Consensus 179 ~G~~~~-~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~ 233 (365)
+||... .+.+|||||+..||.+....+... ...+.+|+|||||+|||+++
T Consensus 149 ~G~~~~~~~~~GHgiGl~~he~~~~~g~~~~-----~~~~~~Le~GMV~~iEP~i~ 199 (228)
T cd01090 149 HDLLRYRTFGYGHSFGVLSHYYGREAGLELR-----EDIDTVLEPGMVVSMEPMIM 199 (228)
T ss_pred cCCCcccccccCcccccccccCCCccccccC-----CCCCCccCCCCEEEECCEEe
Confidence 999864 566899999999974321111111 12457999999999999974
No 22
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=337.32 Aligned_cols=224 Identities=21% Similarity=0.294 Sum_probs=196.3
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCIC 89 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~ 89 (365)
+.|||++||+.||+|+++++.++.++.+.++||+||.||++.++..+.+.|+. +.+|+ ++.+.|.+.+
T Consensus 152 R~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~g~tE~ev~a~l~~~~~~~G~~----------~~sf~~iv~~G~n~a~p 221 (384)
T COG0006 152 RLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAE----------GPSFDTIVASGENAALP 221 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC----------ccCcCcEEeccccccCc
Confidence 47999999999999999999999999999999999999999999999988753 22444 4556899999
Q ss_pred cCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHH
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLIT 169 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~ 169 (365)
||.|+ ++.+++||+|+||+|+.|+||++|+||||++|+++ ++|+++|+++++|++++++++|||+++.+|+
T Consensus 222 H~~~~----~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~-----~~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd 292 (384)
T COG0006 222 HYTPS----DRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPS-----DEQREIYEAVLEAQEAAIAAIRPGVTGGEVD 292 (384)
T ss_pred CCCCC----cccccCCCEEEEEeeeEECCccccceeEEecCCCC-----HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 99999 78899999999999999999999999999999775 8999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcc-ccCccccccc--cceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCce
Q psy18115 170 DTVQKICKDFECKP-LEGMLSHQLK--QGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRV 246 (365)
Q Consensus 170 ~~i~~~~~~~G~~~-~~~~~GHgIG--~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~ 246 (365)
.++++++.+.|++. ..|.+|||+| +.+||. |....+ .+..+|+|||||++||++
T Consensus 293 ~~ar~~i~~~g~~~~~~h~~GHgvG~~l~vhE~--p~~~~~-------~~~~~L~~GMv~t~Epg~-------------- 349 (384)
T COG0006 293 AAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEH--PQYLSP-------GSDTTLEPGMVFSIEPGI-------------- 349 (384)
T ss_pred HHHHHHHHhcCCcccccCCccccCCCCcccCcC--ccccCC-------CCCccccCCcEEEecccc--------------
Confidence 99999999988874 4677999999 999974 321222 256799999999999993
Q ss_pred eEEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEE
Q psy18115 247 TIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLL 326 (365)
Q Consensus 247 ~iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~v 326 (365)
| .+|...+++|++|+|
T Consensus 350 --y--------------------------------------------------------------~~g~~GirIEd~vlV 365 (384)
T COG0006 350 --Y--------------------------------------------------------------IPGGGGVRIEDTVLV 365 (384)
T ss_pred --c--------------------------------------------------------------cCCCceEEEEEEEEE
Confidence 3 335566899999999
Q ss_pred CCCCceEecCCCCCC
Q psy18115 327 MPNGPHRITGIPFES 341 (365)
Q Consensus 327 t~~g~~~lT~~~~~~ 341 (365)
|++|+++||..|.++
T Consensus 366 te~G~e~LT~~~~~~ 380 (384)
T COG0006 366 TEDGFEVLTRVPKEL 380 (384)
T ss_pred cCCCceecccCCcce
Confidence 999999999766543
No 23
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=1.3e-41 Score=337.12 Aligned_cols=194 Identities=19% Similarity=0.218 Sum_probs=165.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCIC 89 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~ 89 (365)
+.|||++||+.||+|++|+++++.++++.++||+||.||++.++..+.++|+. ..+|+ ++.+.|.+.+
T Consensus 171 R~iKs~~EI~~~r~A~~i~~~a~~~~~~~~~pG~tE~ei~a~~~~~~~~~G~~----------~~~~~~iv~~G~na~~~ 240 (438)
T PRK10879 171 RLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGAR----------YPSYNTIVGSGENGCIL 240 (438)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHCCCC----------CCCCCcEEEEcCccccc
Confidence 58999999999999999999999999999999999999999998888887653 23343 5567899999
Q ss_pred cCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEE-CCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhH
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVV-GAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLI 168 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~v-G~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI 168 (365)
||.|+ ++.|++||+|++|+|+.++||++|+||||++ |+.+ ++|+++|+++++|++++++++|||+++++|
T Consensus 241 H~~~~----~~~l~~GDlVliD~G~~~~GY~sDitRT~~v~G~~s-----~~q~~~y~~vl~a~~aai~~~kpG~~~~~v 311 (438)
T PRK10879 241 HYTEN----ESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFT-----PAQREIYDIVLESLETSLRLYRPGTSIREV 311 (438)
T ss_pred cCCCC----ccccCCCCEEEEEeCeEECCEEEEeEEEEEECCcCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 99998 6899999999999999999999999999999 5554 799999999999999999999999999999
Q ss_pred HHHHHHHHH------------------hcCCcc-ccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEe
Q psy18115 169 TDTVQKICK------------------DFECKP-LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMD 229 (365)
Q Consensus 169 ~~~i~~~~~------------------~~G~~~-~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIE 229 (365)
+.++.+++. +.++.. +.|.+||+||+.+||. |.+ .. +.+.+|+||||||||
T Consensus 312 ~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldvHd~--~~~-~~-------~~~~~L~~GmV~tvE 381 (438)
T PRK10879 312 TGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDV--GVY-GQ-------DRSRILEPGMVLTVE 381 (438)
T ss_pred HHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCcCcC--CCc-CC-------CCCCcCCCCCEEEEC
Confidence 999886653 234432 4577899999999963 221 11 245789999999999
Q ss_pred eeeec
Q psy18115 230 VLVST 234 (365)
Q Consensus 230 P~i~~ 234 (365)
|+++.
T Consensus 382 PgiY~ 386 (438)
T PRK10879 382 PGLYI 386 (438)
T ss_pred CEEEE
Confidence 99754
No 24
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=1.4e-41 Score=334.51 Aligned_cols=226 Identities=15% Similarity=0.209 Sum_probs=191.3
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCc-cceeeccCccccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIA-FPTCISVNNCICH 90 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~-~p~~~s~n~~~~H 90 (365)
+.|||++||+.||+|++|++++++++.+.++||+||.||++.+.+.+.+.|.. +++ +++..+..+..+|
T Consensus 176 R~iKs~~EI~~~r~A~~i~~~a~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~----------~~~~~~~v~~G~~~~~h 245 (406)
T PRK14575 176 RVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET----------HFSRFHLISVGADFSPK 245 (406)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCC----------cCCcCceEEECCCcccC
Confidence 47999999999999999999999999999999999999999988877765432 222 2333333345689
Q ss_pred CCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH
Q psy18115 91 FSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITD 170 (365)
Q Consensus 91 ~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~ 170 (365)
+.|+ ++++++||+|++|+|+.++||++|++|||++|+++ ++++++|++++++++++++++|||++++||++
T Consensus 246 ~~~~----~~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~-----~~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~ 316 (406)
T PRK14575 246 LIPS----NTKACSGDLIKFDCGVDVDGYGADIARTFVVGEPP-----EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFD 316 (406)
T ss_pred CCCC----CCcCCCCCEEEEEeceEECCEeeeeEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 8887 78999999999999999999999999999999875 79999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcc-ccCcccccccc--ceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCcee
Q psy18115 171 TVQKICKDFECKP-LEGMLSHQLKQ--GQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVT 247 (365)
Q Consensus 171 ~i~~~~~~~G~~~-~~~~~GHgIG~--~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~ 247 (365)
++++++++.||.. ..+++|||+|+ .+|| .|.+. . .++.+|+|||||+|||++
T Consensus 317 a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~e--~P~i~-~-------~~~~~Le~GMv~tiEpgi--------------- 371 (406)
T PRK14575 317 STMEVIKKSGLPNYNRGHLGHGNGVFLGLEE--SPFVS-T-------HATESFTSGMVLSLETPY--------------- 371 (406)
T ss_pred HHHHHHHHcCCccccCCCCCCcccCCCCCcc--CCCCC-C-------CCCCCcCCCCEEEECCee---------------
Confidence 9999999999974 56889999995 6774 55543 1 245789999999999996
Q ss_pred EEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEEC
Q psy18115 248 IYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLM 327 (365)
Q Consensus 248 iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt 327 (365)
|. .|...+|+|+||+||
T Consensus 372 -y~--------------------------------------------------------------~g~gGvriEDtvlVT 388 (406)
T PRK14575 372 -YG--------------------------------------------------------------YNLGSIMIEDMILIN 388 (406)
T ss_pred -ec--------------------------------------------------------------CCCcEEEEEeEEEEc
Confidence 31 122347999999999
Q ss_pred CCCceEecCCCCCCCCc
Q psy18115 328 PNGPHRITGIPFESDHY 344 (365)
Q Consensus 328 ~~g~~~lT~~~~~~~~~ 344 (365)
++|+++||..|.++-.+
T Consensus 389 ~~G~e~LT~~p~~l~~~ 405 (406)
T PRK14575 389 KEGIEFLSKLPRDLVSF 405 (406)
T ss_pred CCCcccCCCCCcccccC
Confidence 99999999998776544
No 25
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=2.6e-41 Score=311.34 Aligned_cols=188 Identities=18% Similarity=0.140 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPD 99 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~ 99 (365)
|++||+|++|++++++++.+.++||+||.||++.+++.+.+.|+. .+++..++.+.|...+|+.|+ +
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~~G~~---------~~~~~~v~~g~~~~~~H~~~~----~ 67 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGAR---------LAYSYIVAAGSNAAILHYVHN----D 67 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHcCCC---------cCCCCeEEECCCccccCCCcC----C
Confidence 589999999999999999999999999999999999999888753 123334777889999999988 6
Q ss_pred ccccCCCEEEEEeeeEECcEEEEEEEEEEEC-CccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHh
Q psy18115 100 LILKREDVVKIDLGAHVDGFIAVVAHTIVVG-AAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKD 178 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG-~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~ 178 (365)
++|++||+|++|+|+.|+||++|++|||++| +++ +++++++++++++++++++.+|||++++||++++++++++
T Consensus 68 ~~l~~Gd~v~vD~g~~~~GY~ad~~Rt~~vgg~~~-----~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~ 142 (243)
T cd01087 68 QPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFT-----DEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAE 142 (243)
T ss_pred CcCCCCCEEEEEeCceECCEeeeeeEEEEeCCcCC-----HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999994 554 7899999999999999999999999999999999999976
Q ss_pred cC----C---------------ccccCccccccccceecccceee-cCCCcccccccCceeeecCcEEEEeeeeec
Q psy18115 179 FE----C---------------KPLEGMLSHQLKQGQIDGEKTII-QNPSDSQKKEHEKYTFETNEVYAMDVLVST 234 (365)
Q Consensus 179 ~G----~---------------~~~~~~~GHgIG~~~he~~~pii-~~~~~~~~~~~~~~~le~GmV~tIEP~i~~ 234 (365)
.| + ....|.+|||||+.+|| .|.+ ..+ .++.+|++||||+|||+++.
T Consensus 143 ~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e--~p~~~~~~-------~~~~~l~~GMv~~iEp~iy~ 209 (243)
T cd01087 143 GLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHD--VGGYLRYL-------RRARPLEPGMVITIEPGIYF 209 (243)
T ss_pred HHHhcCcccCchHhhhhhhhhhhhcCCCCccccCccccc--CccccccC-------CCCCCCCCCCEEEECCEEEe
Confidence 53 2 23456789999999996 4433 122 25679999999999999854
No 26
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=3.7e-41 Score=330.29 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=161.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCcc-cee-eccCcccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAF-PTC-ISVNNCIC 89 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~-p~~-~s~n~~~~ 89 (365)
+.|||++||++||+|++|++++++++.+.++||+||.||++.+...... +.. ... ....+| ++. .+.|...+
T Consensus 156 R~iKs~~EI~~lr~A~~i~~~~~~~~~~~i~pG~tE~ei~~~~~~~~~~-~~~---~~g--~~~~~~~~iv~sG~~~a~p 229 (391)
T TIGR02993 156 RAVKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIR-GVD---GFG--GDYPAIVPLLPSGADASAP 229 (391)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhh-ccc---CcC--CCcCCcccccccCccccCC
Confidence 5799999999999999999999999999999999999999876543221 110 000 001122 232 34677889
Q ss_pred cCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHH
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLIT 169 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~ 169 (365)
|+.|+ +++|++||+|.+|+|+.|+||++|++|||++|+++ ++++++|+++++|++++++++|||++++||+
T Consensus 230 H~~~~----~~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~-----~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~ 300 (391)
T TIGR02993 230 HLTWD----DSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPT-----QAFLDAEKAVLEGMEAGLEAAKPGNTCEDIA 300 (391)
T ss_pred CCCCC----CCcccCCCEEEEEeeeecccCccceeEEEEcCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 99988 78999999999999999999999999999999875 7899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccCccccccccceeccc---ceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 170 DTVQKICKDFECKPLEGMLSHQLKQGQIDGE---KTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 170 ~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~---~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
++++++++++||.. .|.+|||||+.+|+.. .|.+ .+ +++.+|++||||+|||++
T Consensus 301 ~~~~~~~~~~G~~~-~h~~GhgiGl~~~~~~~e~~~~l-~~-------~~~~~L~~GMv~tvEpgi 357 (391)
T TIGR02993 301 NAFFAVLKKYGIHK-DSRTGYPIGLSYPPDWGERTMSL-RP-------GDNTVLKPGMTFHFMTGL 357 (391)
T ss_pred HHHHHHHHHcCCcc-CCCceeeeccCcCCCCCCccccc-cC-------CCCceecCCCEEEEccee
Confidence 99999999999965 5789999999987311 1222 12 256799999999999985
No 27
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1.4e-40 Score=327.26 Aligned_cols=224 Identities=16% Similarity=0.169 Sum_probs=190.0
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCc-cceeeccCccccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIA-FPTCISVNNCICH 90 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~-~p~~~s~n~~~~H 90 (365)
+.|||++||+.||+|++++++++.++.+.++||+||.||++.++..+.+.|.. +++ +++..+..+..+|
T Consensus 175 R~iKs~~EI~~~r~A~~i~~~~~~~~~~~i~pG~tE~elaa~~~~~~~~~g~~----------~~~~~~~v~~G~~~~~h 244 (405)
T PRK14576 175 RMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPET----------NFSRFNLISVGDNFSPK 244 (405)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcCCC----------cCCCCCEEEECCcccCC
Confidence 47999999999999999999999999999999999999999998888776532 122 3434343346689
Q ss_pred CCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH
Q psy18115 91 FSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITD 170 (365)
Q Consensus 91 ~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~ 170 (365)
+.|+ ++.+++||+|++|+|+.++||++|++|||++|+++ ++++++++++.++++++++++|||++++||++
T Consensus 245 ~~~~----~~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~-----~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~ 315 (405)
T PRK14576 245 IIAD----TTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPD-----KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFD 315 (405)
T ss_pred CCCC----CcccCCCCEEEEEeceeECCEEeeeeEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 8888 68899999999999999999999999999999875 78999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcc-ccCccccccc--cceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCCCcccCCCcee
Q psy18115 171 TVQKICKDFECKP-LEGMLSHQLK--QGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVT 247 (365)
Q Consensus 171 ~i~~~~~~~G~~~-~~~~~GHgIG--~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g~~~~~~~~~~ 247 (365)
+++++++++||.. ..+++|||+| +.+|| .|.+ .++ ++.+|++||||++||++
T Consensus 316 a~~~~~~~~G~~~~~~~~~GHgiG~~l~~~e--~P~i-~~~-------~~~~Le~GMv~~vEp~~--------------- 370 (405)
T PRK14576 316 STMAVIKTSGLPHYNRGHLGHGDGVFLGLEE--VPFV-STQ-------ATETFCPGMVLSLETPY--------------- 370 (405)
T ss_pred HHHHHHHHcCCccccCCCCCCCCCCCCCcCc--CCCc-CCC-------CCCccCCCCEEEECCce---------------
Confidence 9999999999974 4688999999 66774 4543 222 45789999999999874
Q ss_pred EEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCccccccceeecCCCeeEEEEEEEEEC
Q psy18115 248 IYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKLIEPFQVLYEKPGETVAQFKFTVLLM 327 (365)
Q Consensus 248 iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~~~~y~~l~~~~g~~~aq~e~Tv~vt 327 (365)
|. .|...+|+|+||+||
T Consensus 371 -y~--------------------------------------------------------------~g~ggvriEDtvlVT 387 (405)
T PRK14576 371 -YG--------------------------------------------------------------IGVGSIMLEDMILIT 387 (405)
T ss_pred -ee--------------------------------------------------------------cCCCEEEEeeEEEEC
Confidence 31 133458999999999
Q ss_pred CCCceEecCCCCCCC
Q psy18115 328 PNGPHRITGIPFESD 342 (365)
Q Consensus 328 ~~g~~~lT~~~~~~~ 342 (365)
++|+++||..|.++-
T Consensus 388 e~G~e~LT~~p~~l~ 402 (405)
T PRK14576 388 DSGFEFLSKLDRDLR 402 (405)
T ss_pred CCccccCCCCCcccc
Confidence 999999999987653
No 28
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=8.4e-40 Score=323.76 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=185.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCcccee--eccCcccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTC--ISVNNCIC 89 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~--~s~n~~~~ 89 (365)
+.|||++||+.||+|++|++++++++++.++||+||.||.+... ...+.. ..+++|+++ .+.|..++
T Consensus 159 R~iKs~~EI~~mr~A~~i~~~a~~~~~~~i~pG~tE~ei~~~~~---~~~~~~--------~~~~~y~~iva~G~naa~~ 227 (443)
T PRK13607 159 RAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFDINLAYL---TATGQR--------DNDVPYGNIVALNEHAAVL 227 (443)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH---HHhCCC--------CcCCCCCcEEEecCcceEe
Confidence 57999999999999999999999999999999999999987532 222211 134567643 34678999
Q ss_pred cCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHH
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLIT 169 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~ 169 (365)
||.|+. .+.+++||+|+||+|+.++||++|+||||+ |+++ ++++++|+++++|++++++++|||+++.||+
T Consensus 228 H~~~~~---~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~-----~~~~~ly~~v~~aq~aai~~ikPG~~~~dv~ 298 (443)
T PRK13607 228 HYTKLD---HQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKED-----NDFAALIKDVNKEQLALIATMKPGVSYVDLH 298 (443)
T ss_pred cCCccC---CCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCC-----HHHHHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 999872 246899999999999999999999999999 7654 7889999999999999999999999999999
Q ss_pred HHHHHHH----HhcCCc----------------cccCccccccccceecccceeecC-------CCcccccccCceeeec
Q psy18115 170 DTVQKIC----KDFECK----------------PLEGMLSHQLKQGQIDGEKTIIQN-------PSDSQKKEHEKYTFET 222 (365)
Q Consensus 170 ~~i~~~~----~~~G~~----------------~~~~~~GHgIG~~~he~~~pii~~-------~~~~~~~~~~~~~le~ 222 (365)
.++.+++ .+.|+. .+.|.+||+||+.+||.+. +..+ +......+....+|+|
T Consensus 299 ~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iGldvHd~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~ 377 (443)
T PRK13607 299 IQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLGLQVHDVAG-FMQDDRGTHLAAPEKHPYLRCTRVLEP 377 (443)
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccCcccccCCC-cccccccccccccccccccccCCcCCC
Confidence 9887766 445543 2457799999999998531 1000 0000001224578999
Q ss_pred CcEEEEeeeeecCCCCcccCCCceeEEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcCc
Q psy18115 223 NEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKL 302 (365)
Q Consensus 223 GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~~ 302 (365)
||||||||+++.-...+.. .... .....+|...
T Consensus 378 GmV~TvEPGiY~~~~ll~~----------------------------------------------~~~~-~~~~~in~~~ 410 (443)
T PRK13607 378 GMVLTIEPGLYFIDSLLAP----------------------------------------------LREG-PFSKHFNWQK 410 (443)
T ss_pred CcEEEECCeeeeChhhhch----------------------------------------------hhhh-hhhhhccHHH
Confidence 9999999997532111000 0000 0112234444
Q ss_pred cccccceeecCCCeeEEEEEEEEECCCCceEecCC
Q psy18115 303 IEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGI 337 (365)
Q Consensus 303 ~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~~ 337 (365)
|+.|+ ...| .|+|++|+||++|+++||..
T Consensus 411 i~~~~---~~GG---vRIED~vlVT~~G~e~Lt~~ 439 (443)
T PRK13607 411 IDALK---PFGG---IRIEDNVVVHENGVENMTRD 439 (443)
T ss_pred HHhhc---CCCE---EeecceEEEcCCCCeECChh
Confidence 55555 2333 89999999999999999964
No 29
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=2.2e-37 Score=278.16 Aligned_cols=184 Identities=17% Similarity=0.268 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcccccCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSD 97 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~H~~p~~~~ 97 (365)
|++||+|++++++++.++.+.++||+||.||++.+...+.+.|++ +++|+ ++.+.|...+|+.|+
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~----------~~~~~~~v~~g~~~~~~h~~~~--- 67 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAE----------GPSFDTIVASGPNSALPHGVPS--- 67 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCCC----------CCCCCcEEEECccccccCCCCC---
Confidence 579999999999999999999999999999999999888887653 34565 455577788999987
Q ss_pred CCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q psy18115 98 PDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICK 177 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~ 177 (365)
+++|++||+|++|+|+.++||++|++||+++|+++ ++++++++++.++++++++.+|||++++||+++++++++
T Consensus 68 -~~~l~~gd~v~id~g~~~~gy~~d~~RT~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~ 141 (208)
T cd01092 68 -DRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPS-----DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIE 141 (208)
T ss_pred -CcCcCCCCEEEEEeeeeECCEeccceeEEECCCCC-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999875 789999999999999999999999999999999999999
Q ss_pred hcCCcc-ccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 178 DFECKP-LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 178 ~~G~~~-~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
++|+.. ..+.+||+||+..|| .|.+. + .++.+|++||||+|||++
T Consensus 142 ~~g~~~~~~~~~Gh~iG~~~~e--~p~i~-~-------~~~~~l~~gmv~~iep~~ 187 (208)
T cd01092 142 EAGYGEYFIHRTGHGVGLEVHE--APYIS-P-------GSDDVLEEGMVFTIEPGI 187 (208)
T ss_pred HcCccccCCCCCccccCcccCc--CCCcC-C-------CCCCCcCCCCEEEECCeE
Confidence 999864 467799999999996 34432 2 256799999999999996
No 30
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=9.5e-37 Score=274.09 Aligned_cols=184 Identities=24% Similarity=0.346 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHhhccccccccccccCCccc--eeeccCcccccCCCCCCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQL-LFDETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSD 97 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~-i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~H~~p~~~~ 97 (365)
|+||+|++|++++++++.+.++||+|+.||++.+.+. +.+.|.. +++|+ ++.+.|...+|+.|+
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~~g~~----------~~~~~~~~~~g~~~~~~~~~~~--- 67 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEALRPGMTEYEIAAAIERAMLRRHGGE----------EPAFPPIVGSGPNTDLPHYTPT--- 67 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCBHHHHHHHHHHHHHHHTTTT----------EESSESEEEECCCCGETTTBCC---
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHcCCC----------cccCCceEecCCcceecceecc---
Confidence 6899999999999999999999999999999999988 4555532 33454 566788888999886
Q ss_pred CCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q psy18115 98 PDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICK 177 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~ 177 (365)
+++|++||+|++|+|+.++||++|++||+++| ++ +++++++++++++++.+++.+|||++++||++++.++++
T Consensus 68 -~~~l~~gd~v~id~~~~~~gy~~d~~Rt~~~G-~~-----~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~ 140 (207)
T PF00557_consen 68 -DRRLQEGDIVIIDFGPRYDGYHADIARTFVVG-PT-----PEQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLE 140 (207)
T ss_dssp -SSBESTTEEEEEEEEEEETTEEEEEEEEEESS-SH-----HHHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHH
T ss_pred -ceeeecCCcceeeccceeeeeEeeeeeEEEEe-ec-----ccccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHH
Confidence 68999999999999999999999999999999 53 789999999999999999999999999999999999999
Q ss_pred hcCC-ccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 178 DFEC-KPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 178 ~~G~-~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
++|| ....+.+||+||+.+|+. .|.+.+. +++.+|++||||+|||++
T Consensus 141 ~~g~~~~~~~~~GH~iG~~~~~~-~P~i~~~-------~~~~~l~~gmv~~iep~~ 188 (207)
T PF00557_consen 141 EYGLEEPYPHGLGHGIGLEFHEP-GPNIARP-------GDDTVLEPGMVFAIEPGL 188 (207)
T ss_dssp HTTEGEEBTSSSEEEESSSSSEE-EEEESST-------TTSSB--TTBEEEEEEEE
T ss_pred hhcccceeeeccccccccccccc-ceeeecc-------cccceecCCCceeEeeeE
Confidence 9999 567889999999999962 2565422 256799999999999985
No 31
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=1e-36 Score=276.74 Aligned_cols=186 Identities=9% Similarity=0.084 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcccccCCCCCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVEN--ASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCICHFSPLRS 96 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG--~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~H~~p~~~ 96 (365)
+.||.+..+ .++++.+.+.++|| +||.||++.+++++.+.+. ..+.+|| +|++.|++++|+.|++.
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~---------~~~~~f~~~v~~g~n~~~~H~~p~~~ 74 (224)
T cd01085 5 AHIRDGVAL-VEFLAWLEQEVPKGETITELSAADKLEEFRRQQKG---------YVGLSFDTISGFGPNGAIVHYSPTEE 74 (224)
T ss_pred HHHHHHHHH-HHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCC---------CcCCCcceEEEecCccCcCCCCcCcc
Confidence 345555555 59999999999999 9999999999987776542 1244565 67789999999999742
Q ss_pred CCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q psy18115 97 DPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLM-KPGNDTYLITDTVQKI 175 (365)
Q Consensus 97 ~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~l-kPG~~~~dI~~~i~~~ 175 (365)
+ +++|++||+|++|+|+.++||++|++|||++|+++ ++++++++++++++.++++.+ +||+++.+|+++++++
T Consensus 75 ~-~r~l~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~-----~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~ 148 (224)
T cd01085 75 S-NRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPT-----AEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQP 148 (224)
T ss_pred c-CcccCCCCEEEEEeCccCCCcccccEEeecCCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 2 58899999999999999999999999999999875 789999999999999999888 5999999999999999
Q ss_pred HHhcCCccccCccccccc--cceecccceeec-CCCcccccccCceeeecCcEEEEeeee
Q psy18115 176 CKDFECKPLEGMLSHQLK--QGQIDGEKTIIQ-NPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 176 ~~~~G~~~~~~~~GHgIG--~~~he~~~pii~-~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
+.+.|+. +.+++||||| +.+|| .|.++ .+ .++.+|+|||||||||++
T Consensus 149 ~~~~g~~-~~h~~GHgIG~~l~~hE--~P~i~~~~-------~~~~~L~~GmvftiEP~i 198 (224)
T cd01085 149 LWKAGLD-YGHGTGHGVGSFLNVHE--GPQSISPA-------PNNVPLKAGMILSNEPGY 198 (224)
T ss_pred HHHhCCC-CCCCCCCCCCCCCcCCC--CCCcCCcC-------CCCCCcCCCCEEEECCEe
Confidence 9999985 5677999999 57796 34443 12 245789999999999996
No 32
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=5.3e-36 Score=275.09 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hccCC--CCHHHHHHHHHHHHHHhhcccc-ccccccccCCccc-eeec-cCc-cc
Q psy18115 20 VTKYKMASEIVNRVLKLVIE-----KCVEN--ASAKDICEFSDQLLFDETSKCF-KKIKDMKKGIAFP-TCIS-VNN-CI 88 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~-----~i~pG--~te~el~~~~~~~i~~~g~~~~-~~~~~~~~g~~~p-~~~s-~n~-~~ 88 (365)
++.||+|++++..+|+.... .|.+| +|+.+|+..+++.|.+.+.... ..... -+++|+ +..| .|. ..
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~~~~~t~~~l~~~~e~~~~~~~~~~~~~~~~~--~~~~y~~iv~sG~~~~~l 78 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQ--LDWCYPPIIQSGGNYDLL 78 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhCchhhhcCCCHHH--cCcccCCeEeECcCcccC
Confidence 46899999999999987665 89999 9999999999999988763210 00011 256775 4444 555 57
Q ss_pred ccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhH
Q psy18115 89 CHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLI 168 (365)
Q Consensus 89 ~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI 168 (365)
.|+.++ ++.+..|++|++|+|+.|+||++|++|||++|+ + ++++++|+++++|++++++.+|||+++++|
T Consensus 79 ~h~~~s----~~~~~~~~~vl~d~G~~y~gY~sditRT~~v~p-~-----~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv 148 (243)
T cd01091 79 KSSSSS----DKLLYHFGVIICSLGARYKSYCSNIARTFLIDP-T-----SEQQKNYNFLLALQEEILKELKPGAKLSDV 148 (243)
T ss_pred CCCCCC----ccccCCCCEEEEEeCcccCCEeecceEEEEcCC-C-----HHHHHHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 788777 688999999999999999999999999999984 3 789999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcc---ccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeee
Q psy18115 169 TDTVQKICKDFECKP---LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVS 233 (365)
Q Consensus 169 ~~~i~~~~~~~G~~~---~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~ 233 (365)
++++.+++++.|... ..+.+|||||+.+||. |.+++++ ++.+|++||||+|||+++
T Consensus 149 ~~~a~~~i~~~~~~~~~~~~~~~GHgiGle~hE~--~~~l~~~-------~~~~L~~GMvf~vepGi~ 207 (243)
T cd01091 149 YQKTLDYIKKKKPELEPNFTKNLGFGIGLEFRES--SLIINAK-------NDRKLKKGMVFNLSIGFS 207 (243)
T ss_pred HHHHHHHHHHhChhHHHhCcCCcccccCcccccC--ccccCCC-------CCCCcCCCCEEEEeCCcc
Confidence 999999999987443 3456899999999963 3333332 457899999999999974
No 33
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=1.3e-35 Score=264.90 Aligned_cols=183 Identities=20% Similarity=0.294 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCc--ccccCCCCCCC
Q psy18115 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNN--CICHFSPLRSD 97 (365)
Q Consensus 20 Ie~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~--~~~H~~p~~~~ 97 (365)
|+.||+|++|+++++.++.+.++||+||.||++.+.+.+.+.|+ +++++++++.|. ..+|+.|.
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~-----------~~~~~~~v~~g~~~~~~h~~~~--- 66 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGG-----------YPAGPTIVGSGARTALPHYRPD--- 66 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHcCC-----------CCCCCcEEEECccccCcCCCCC---
Confidence 57899999999999999999999999999999999988888754 345666776665 78999887
Q ss_pred CCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q psy18115 98 PDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICK 177 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~ 177 (365)
++++++||+|++|+|+.++||++|++|||++|+++ ++++++++++.++++.+++.++||+++.||+++++++++
T Consensus 67 -~~~i~~gd~v~~d~g~~~~gy~~d~~rt~~~g~~~-----~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~ 140 (207)
T cd01066 67 -DRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPS-----DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLE 140 (207)
T ss_pred -CCCcCCCCEEEEEeceeECCCccceeceeEcCCCC-----HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999875 799999999999999999999999999999999999999
Q ss_pred hcCC-ccccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 178 DFEC-KPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 178 ~~G~-~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
+.|+ ....+++||+||+..|| .|.+ ++ ..+.+|++||||+|||++
T Consensus 141 ~~g~~~~~~~~~Gh~iG~~~~e--~~~~-~~-------~~~~~l~~gmv~~iep~~ 186 (207)
T cd01066 141 EHGLGPNFGHRTGHGIGLEIHE--PPVL-KA-------GDDTVLEPGMVFAVEPGL 186 (207)
T ss_pred HcCccccCCCCCccccCcccCC--CCCc-CC-------CCCCCcCCCCEEEECCEE
Confidence 9999 46788899999999996 3332 22 245789999999999996
No 34
>KOG2737|consensus
Probab=100.00 E-value=6.6e-36 Score=276.12 Aligned_cols=273 Identities=16% Similarity=0.205 Sum_probs=212.8
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCcc-ceeec-cCcc
Q psy18115 10 EEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAF-PTCIS-VNNC 87 (365)
Q Consensus 10 ~~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~-p~~~s-~n~~ 87 (365)
+-+.|||+.||+.||.|++|+++++.+++.+++||+.|+++....+......|+. +..+| ++|.| .|..
T Consensus 181 E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGc---------Rh~sYtcIc~sG~ns~ 251 (492)
T KOG2737|consen 181 ECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGC---------RHLSYTCICASGDNSA 251 (492)
T ss_pred hheeeCCHHHHHHHHHHHhhccHHHHHHHHhCCchHhHHhHHHHHHHhhhccCCc---------cccccceeeecCCCcc
Confidence 3446999999999999999999999999999999999999999877666655542 22334 45655 7889
Q ss_pred cccC----CCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCC
Q psy18115 88 ICHF----SPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGN 163 (365)
Q Consensus 88 ~~H~----~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~ 163 (365)
+.|| .|+ ++.+|+||+.++|+|+.|.+|.+|+|++|+....+ |.+|+.+|++++.++.++++++|||+
T Consensus 252 vLHYgha~apN----d~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKF----Tadqk~VYnaVLda~navm~a~KpGv 323 (492)
T KOG2737|consen 252 VLHYGHAGAPN----DRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKF----TADQKLVYNAVLDASNAVMEAMKPGV 323 (492)
T ss_pred eeeccccCCCC----CcccCCCCEEEEecCcceeeeecccceeccCCCcc----chhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999 677 79999999999999999999999999999998877 68999999999999999999999999
Q ss_pred ChhhHHHHHHHHHH----hcCC---------------ccccCccccccccceeccc-ce-eecCCCccc-ccccCceeee
Q psy18115 164 DTYLITDTVQKICK----DFEC---------------KPLEGMLSHQLKQGQIDGE-KT-IIQNPSDSQ-KKEHEKYTFE 221 (365)
Q Consensus 164 ~~~dI~~~i~~~~~----~~G~---------------~~~~~~~GHgIG~~~he~~-~p-ii~~~~~~~-~~~~~~~~le 221 (365)
.+.|++....+++- +.|. -..+|-.||-+|+++|+.+ .| -+..|..++ +.+...+.|+
T Consensus 324 ~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~ 403 (492)
T KOG2737|consen 324 WWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLK 403 (492)
T ss_pred ccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeeccccccccccccccccCCCCCCCCCCCcchhhhhhhhhhhh
Confidence 99999987666553 3342 1235668999999999843 21 222222222 2234567899
Q ss_pred cCcEEEEeeeeecCCCCcccCCCceeEEecCCccccccchhHHHHHHHHHhhCCcccccccccCChhhhhhhHHHHHHcC
Q psy18115 222 TNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHK 301 (365)
Q Consensus 222 ~GmV~tIEP~i~~g~g~~~~~~~~~~iy~~~~~~~~lk~~~~~~~~~~i~~~~~~~pF~~r~l~~~~~~~~~~~~~~~~~ 301 (365)
+|||+||||+. |. +.||.++--++....++++..
T Consensus 404 e~MviTvEPGc----------------YF------------------------------i~~Ll~ealadp~~~~f~n~e 437 (492)
T KOG2737|consen 404 EGMVITVEPGC----------------YF------------------------------IDFLLDEALADPARAEFLNRE 437 (492)
T ss_pred cCcEEEecCCh----------------hH------------------------------HHHHHHHHhcChHhhhhhhHH
Confidence 99999999995 42 112333333445566777777
Q ss_pred ccccccceeecCCCeeEEEEEEEEECCCCceEecCCCCCCCCccCCCcCCcHHHHHHhhcc
Q psy18115 302 LIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSS 362 (365)
Q Consensus 302 ~~~~y~~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
+++.|. ...| .|+|+.|+||++|++.||..|.+ -|||.++++.-
T Consensus 438 ~~~rfr---~~GG---VRIEdDv~vt~~G~enlt~vprt-----------veeIEa~ma~g 481 (492)
T KOG2737|consen 438 VLQRFR---GFGG---VRIEDDVVVTKSGIENLTCVPRT-----------VEEIEACMAGG 481 (492)
T ss_pred HHHHhh---ccCc---eEeeccEEEeccccccccCCCCC-----------HHHHHHHHhcC
Confidence 777776 3444 89999999999999999999974 57888877643
No 35
>KOG2414|consensus
Probab=100.00 E-value=6.7e-34 Score=265.47 Aligned_cols=194 Identities=13% Similarity=0.192 Sum_probs=165.0
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccc--eeeccCcccc
Q psy18115 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP--TCISVNNCIC 89 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p--~~~s~n~~~~ 89 (365)
+.||||+|++.||+||.|+.+++-..+-.-|++..|..|++.++..++..|++ -.+|| +..+.|..+.
T Consensus 226 RlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad----------~~AYpPVVAgG~na~tI 295 (488)
T KOG2414|consen 226 RLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGAD----------RLAYPPVVAGGKNANTI 295 (488)
T ss_pred HccCCHHHHHHHHHHhhhhhHHHHHHHhhccCCcchhhHhhhhhhheeecCcc----------ccccCCeeecCcccceE
Confidence 36999999999999999999999999999999999999999999999988875 23454 3445788889
Q ss_pred cCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCC--CCChhh
Q psy18115 90 HFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKP--GNDTYL 167 (365)
Q Consensus 90 H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkP--G~~~~d 167 (365)
||.-+ +..|+++|+|++|.||.+.||.+|+||||++...+ |+.|++||+++++.++.+|+.++| |.++.+
T Consensus 296 HY~~N----nq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkF----s~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~ 367 (488)
T KOG2414|consen 296 HYVRN----NQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKF----SDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQ 367 (488)
T ss_pred EEeec----ccccCCCcEEEEecCcccCceEccceeccCCCCcc----CcHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 99987 68899999999999999999999999999998777 689999999999999999999999 999999
Q ss_pred HHHHHHHH----HHhcCCc------------cccCccccccccceecccceeecCCCcccccccCceeeecCcEEEEeee
Q psy18115 168 ITDTVQKI----CKDFECK------------PLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVL 231 (365)
Q Consensus 168 I~~~i~~~----~~~~G~~------------~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~ 231 (365)
|+...... +++.|.. ...|.+||-+|+++||. |-+. .+..|+||||||||||
T Consensus 368 l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~--p~v~----------r~~pL~pg~ViTIEPG 435 (488)
T KOG2414|consen 368 LFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDC--PTVS----------RDIPLQPGMVITIEPG 435 (488)
T ss_pred HHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhcCcccccC--CCCC----------CCccCCCCceEEecCc
Confidence 98754443 4445532 34677899999999973 3221 3458999999999999
Q ss_pred eecC
Q psy18115 232 VSTG 235 (365)
Q Consensus 232 i~~g 235 (365)
++-+
T Consensus 436 vYIP 439 (488)
T KOG2414|consen 436 VYIP 439 (488)
T ss_pred eecC
Confidence 8544
No 36
>KOG2413|consensus
Probab=99.83 E-value=2.4e-19 Score=176.02 Aligned_cols=200 Identities=13% Similarity=0.120 Sum_probs=157.7
Q ss_pred hccCCHHHHHHHHHH----HHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHHhhccccccccccccCCccceee---
Q psy18115 12 KTIAEDLVVTKYKMA----SEIVNRVLKLVIEKCVEN--ASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCI--- 82 (365)
Q Consensus 12 ~~iKs~~EIe~~r~A----~~i~~~~~~~~~~~i~pG--~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~--- 82 (365)
+++|++.|++.||.| +....+-+..+-..+..| ++|.+++..++++=.++. .+.|.+|++..
T Consensus 305 kAiKN~~E~~gmr~shirD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~---------~fmglSFeTIS~s~ 375 (606)
T KOG2413|consen 305 KAIKNDDELKGMRNSHIRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQD---------HFMGLSFETISSSV 375 (606)
T ss_pred HHhcChHHhhhhhhcchhhHHHHHHHHHHHhhhhhcCcccchhhHHHHHHHHHHhhc---------cccCcCcceeeccC
Confidence 479999999999987 444455666777778888 899999999887654431 13688899655
Q ss_pred ccCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCC-
Q psy18115 83 SVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKP- 161 (365)
Q Consensus 83 s~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkP- 161 (365)
+.|.+++||.|.... ++.+.+..+.++|.|++|.-=.+|+|||+.+|+|+ .++++.+..++...-+..+++-|
T Consensus 376 G~NgAviHYsP~~e~-n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs-----~eek~~yT~VLkGhi~la~~vFP~ 449 (606)
T KOG2413|consen 376 GPNGAVIHYSPPAET-NRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPT-----AEEKEAYTLVLKGHIALARAVFPK 449 (606)
T ss_pred CCCceeeecCCCccc-cceecCceEEEEccCcccccCccceeEEEecCCCC-----HHHHHHHHHHHHhhhHhhhcccCC
Confidence 579999999998654 58999999999999999866699999999999997 78999999999988877776655
Q ss_pred CCChhhHHHHHHHHHHhcCCccccCccccccccc--eecccceeecCCCcccccccCceeeecCcEEEEeeeee
Q psy18115 162 GNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG--QIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVS 233 (365)
Q Consensus 162 G~~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~--~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~ 233 (365)
|.....++..++..+-+.|.. ..|-+|||+|.+ +|| .|+...+. ...+...|++||++++|||.+
T Consensus 450 ~t~g~~lD~laR~~LW~~gLD-y~HgTGHGVG~fLnVhE--~P~~is~r----~~~~~~~l~ag~~~s~EPGYY 516 (606)
T KOG2413|consen 450 GTKGSVLDALARSALWKAGLD-YGHGTGHGVGSFLNVHE--GPIGIGYR----PYSSNFPLQAGMVFSIEPGYY 516 (606)
T ss_pred CCCcchhHHHHHHHHHhhccc-cCCCCCcccccceEecc--CCceeeee----ecCCCchhcCceEeccCCccc
Confidence 677777888888888888874 577799999965 575 34332221 112567899999999999964
No 37
>KOG1189|consensus
Probab=99.82 E-value=4.1e-19 Score=176.74 Aligned_cols=198 Identities=12% Similarity=0.176 Sum_probs=150.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-----HHhccCC--CCHHHHHHHHHHHHHHhhccccccccccccCCccc-eeecc
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLV-----IEKCVEN--ASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP-TCISV 84 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~-----~~~i~pG--~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p-~~~s~ 84 (365)
.+|++.||+.+|+|+.++...|... ..++-.| ++..-|...++.+|...-.. ++.....-.++|| +..|+
T Consensus 136 avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s--~~l~~~~~d~cY~PIiqSG 213 (960)
T KOG1189|consen 136 AVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYS--PGLDPDLLDMCYPPIIQSG 213 (960)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccC--cccCccccccccChhhhcC
Confidence 6999999999999999999999843 3445555 67777888888887663221 1111111245665 55565
Q ss_pred CcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy18115 85 NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGND 164 (365)
Q Consensus 85 n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~ 164 (365)
...-..+ +...++..| | +|+..+|++|++||+.++|||.+.+. .++++.|+..+.|++++++.||||+.
T Consensus 214 g~ydlk~--sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Lidps------semq~nY~fLl~aqe~il~~lrpG~k 282 (960)
T KOG1189|consen 214 GKYDLKP--SAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLIDPS------SEMQENYEFLLAAQEEILKLLRPGTK 282 (960)
T ss_pred Ccccccc--ccccccccc--c-eEEeeccchhhhhhccccceeeecch------HHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4433332 221124667 4 99999999999999999999999864 58999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCCccccCc---cccccccceecccceeecCCCcccccccCceeeecCcEEEEeeee
Q psy18115 165 TYLITDTVQKICKDFECKPLEGM---LSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLV 232 (365)
Q Consensus 165 ~~dI~~~i~~~~~~~G~~~~~~~---~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i 232 (365)
.++|+.++.+++++.+...+.+| .|.|||+.+.|+ .++.|. .++.+|++||||.|-.++
T Consensus 283 i~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREs--sl~ina-------Knd~~lk~gmvFni~lGf 344 (960)
T KOG1189|consen 283 IGDVYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRES--SLVINA-------KNDRVLKKGMVFNISLGF 344 (960)
T ss_pred hhHHHHHHHHHHHhcCcchhhhhhhhcccccceeeecc--cccccc-------cchhhhccCcEEEEeecc
Confidence 99999999999999988766555 699999999964 455544 256899999999887664
No 38
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.52 E-value=2.7e-13 Score=133.22 Aligned_cols=207 Identities=13% Similarity=0.170 Sum_probs=143.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH---hccCC---CCHHHHHHHHHHHHHHhhc-c--cc-cccccc-ccCCcc-ce
Q psy18115 13 TIAEDLVVTKYKMASEIVNRVLKLVIE---KCVEN---ASAKDICEFSDQLLFDETS-K--CF-KKIKDM-KKGIAF-PT 80 (365)
Q Consensus 13 ~iKs~~EIe~~r~A~~i~~~~~~~~~~---~i~pG---~te~el~~~~~~~i~~~g~-~--~~-~~~~~~-~~g~~~-p~ 80 (365)
.+|+.+||+.+|.+++.+...|....+ .+..| +|...+...++..+...-. + .. .+..++ ...|.| |+
T Consensus 169 ~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~~d~lew~ytpi 248 (1001)
T COG5406 169 LTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDIDLDQLEWCYTPI 248 (1001)
T ss_pred ccccHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhhccchHHHHhhhhcchhhhhhhcCccccccchhhhhhhcchh
Confidence 589999999999999999999985433 22222 3444555544443321100 0 00 000000 013444 45
Q ss_pred eeccCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcC
Q psy18115 81 CISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMK 160 (365)
Q Consensus 81 ~~s~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lk 160 (365)
..|+...-. .|+....+..| .||+|++.+|.+|+|||+.++||+++.+. .+|++-|+.++.+|...+..+|
T Consensus 249 iqsg~~~Dl--~psa~s~~~~l-~gd~vl~s~GiRYn~YCSn~~RT~l~dp~------~e~~~Ny~fl~~lQk~i~~~~r 319 (1001)
T COG5406 249 IQSGGSIDL--TPSAFSFPMEL-TGDVVLLSIGIRYNGYCSNMSRTILTDPD------SEQQKNYEFLYMLQKYILGLVR 319 (1001)
T ss_pred hccCceeec--ccccccCchhh-cCceEEEEeeeeeccccccccceEEeCCc------hHhhhhHHHHHHHHHHHHhhcC
Confidence 555544322 23321112223 48899999999999999999999999875 4899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHhcCCccccCc---cccccccceecccceeecCCCcccccccCceeeecCcEEEEeeeeecCCC
Q psy18115 161 PGNDTYLITDTVQKICKDFECKPLEGM---LSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDG 237 (365)
Q Consensus 161 PG~~~~dI~~~i~~~~~~~G~~~~~~~---~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~g~g 237 (365)
||...++|+..+.+++.+.|.....+| +|-+||+...+...|+ |. .++++|+.||+|.|-- |+|
T Consensus 320 pG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~--nv-------kn~r~lq~g~~fnis~----gf~ 386 (1001)
T COG5406 320 PGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPF--NV-------KNGRVLQAGCIFNISL----GFG 386 (1001)
T ss_pred CCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhccccccccccce--ec-------cCCceeccccEEEEee----ccc
Confidence 999999999999999999998877776 5999999988755443 32 2558999999997754 455
Q ss_pred Cccc
Q psy18115 238 VGRE 241 (365)
Q Consensus 238 ~~~~ 241 (365)
-+..
T Consensus 387 nl~~ 390 (1001)
T COG5406 387 NLIN 390 (1001)
T ss_pred ccCC
Confidence 5533
No 39
>KOG2738|consensus
Probab=97.67 E-value=0.00023 Score=65.61 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCC
Q psy18115 139 GKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFEC 181 (365)
Q Consensus 139 ~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~ 181 (365)
...+.....+++.++.|..+++||++..||++++.+.+-+.|+
T Consensus 123 e~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~ 165 (369)
T KOG2738|consen 123 EGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGA 165 (369)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHhcCC
Confidence 4567788888999999999999999999999999888877664
No 40
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0016 Score=59.90 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCCccc-cCccc--cccccceecccceeecCCCccccccc
Q psy18115 139 GKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPL-EGMLS--HQLKQGQIDGEKTIIQNPSDSQKKEH 215 (365)
Q Consensus 139 ~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~~~~-~~~~G--HgIG~~~he~~~pii~~~~~~~~~~~ 215 (365)
...++.-+.+.++++.+.+.++||++..||.+.+++++++.|..+. .++-| -.+...+-| .+.++- + .
T Consensus 12 ek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe----~v~Hgi-P----~ 82 (255)
T COG0024 12 EKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNE----VVAHGI-P----G 82 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhh----eeeecC-C----C
Confidence 3566777778888999999999999999999999999998654321 11211 112222211 111100 0 0
Q ss_pred CceeeecCcEEEEeeeee
Q psy18115 216 EKYTFETNEVYAMDVLVS 233 (365)
Q Consensus 216 ~~~~le~GmV~tIEP~i~ 233 (365)
+..+|++|+++.|+.++.
T Consensus 83 d~~vlk~GDiv~IDvg~~ 100 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAH 100 (255)
T ss_pred CCcccCCCCEEEEEEEEE
Confidence 346788888888887765
No 41
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=97.20 E-value=0.0064 Score=53.52 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCCc
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDL 100 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~ 100 (365)
+.++++.+.+.++++.+.+.++||++..||...+.+.+.+.|...+.. ....+.+.....+... ..+. .+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~i~pG~~~~ei~~~~~~~~~~~g~~~~~~-----~~~Gh~iG~~~~e~~~-~~~~---~~~ 172 (207)
T cd01066 102 DEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFG-----HRTGHGIGLEIHEPPV-LKAG---DDT 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCccccCC-----CCCccccCcccCCCCC-cCCC---CCC
Confidence 578899999999999999999999999999999999999887521110 1111222222111100 1111 157
Q ss_pred cccCCCEEEEEeeeEEC-cEEEEEEEEEEECC
Q psy18115 101 ILKREDVVKIDLGAHVD-GFIAVVAHTIVVGA 131 (365)
Q Consensus 101 ~l~~GDiV~iD~g~~~~-GY~aD~~RT~~vG~ 131 (365)
+|++|.++.|+.+.... ++..-+.-|++|.+
T Consensus 173 ~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt~ 204 (207)
T cd01066 173 VLEPGMVFAVEPGLYLPGGGGVRIEDTVLVTE 204 (207)
T ss_pred CcCCCCEEEECCEEEECCCcEEEeeeEEEEeC
Confidence 89999999999999877 58888888999865
No 42
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=96.92 E-value=0.013 Score=51.99 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCC-CCCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLR-SDPD 99 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~-~~~~ 99 (365)
+.+|++.+.+.++++.+++.++||++..||...+++.+.+.|...+.. .+..+.++... |-.|.. .+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~di~~~~~~~~~~~g~~~~~~-----~~~Gh~iG~~~-----~e~p~i~~~~~ 172 (208)
T cd01092 103 DELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFI-----HRTGHGVGLEV-----HEAPYISPGSD 172 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCccccCC-----CCCccccCccc-----CcCCCcCCCCC
Confidence 467789999999999999999999999999999999998887532110 11222222221 222211 1125
Q ss_pred ccccCCCEEEEEeeeEECcE-EEEEEEEEEECC
Q psy18115 100 LILKREDVVKIDLGAHVDGF-IAVVAHTIVVGA 131 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY-~aD~~RT~~vG~ 131 (365)
.+|++|.++.|+.+....|+ -.-+.-|++|.+
T Consensus 173 ~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt~ 205 (208)
T cd01092 173 DVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVTE 205 (208)
T ss_pred CCcCCCCEEEECCeEEecCCCEEEeeeEEEECC
Confidence 78999999999999877554 334667787754
No 43
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=96.87 E-value=0.015 Score=53.62 Aligned_cols=106 Identities=11% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCCc
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDL 100 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~ 100 (365)
+..|++-+++.++.+++++.++||++..|+...+.+.+.+.+...... +.++..+.+++...+....-.|. + ++
T Consensus 119 ~~~~~~y~~~~~a~~~~i~~lkpG~~~~dv~~~a~~~i~~~~~~~~~~---~~~~~GHgiGle~hE~~~~l~~~--~-~~ 192 (243)
T cd01091 119 SEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPELEPN---FTKNLGFGIGLEFRESSLIINAK--N-DR 192 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhChhHHHh---CcCCcccccCcccccCccccCCC--C-CC
Confidence 467788999999999999999999999999999999998865321000 11233344444433321111122 1 57
Q ss_pred cccCCCEEEEEeeeE-EC----------cEEEEEEEEEEECCc
Q psy18115 101 ILKREDVVKIDLGAH-VD----------GFIAVVAHTIVVGAA 132 (365)
Q Consensus 101 ~l~~GDiV~iD~g~~-~~----------GY~aD~~RT~~vG~~ 132 (365)
+|++|.++.|..|.. +. .|-.=++-|++|.+.
T Consensus 193 ~L~~GMvf~vepGi~~~~~~~~~~~~~~~~gv~ieDtV~Vt~~ 235 (243)
T cd01091 193 KLKKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTED 235 (243)
T ss_pred CcCCCCEEEEeCCcccccCccccCccCCeeEEEEEEEEEEcCC
Confidence 899999999999986 32 577778999999654
No 44
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.79 E-value=0.025 Score=51.49 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCC-CCC-CCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFS-PLR-SDPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~-p~~-~~~~ 99 (365)
..|++-+++.++++++++.++||++-.|+.+.+++.+.+.|...+.. .++.+.+.+...+. .|+. |.. .+.+
T Consensus 110 ~~~~~~~~~~ea~~~~~~~~rpG~~~~~v~~a~~~~~~~~G~~~~~~-----~~~GHgiGl~~he~-~~~~g~~~~~~~~ 183 (228)
T cd01090 110 AHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRT-----FGYGHSFGVLSHYY-GREAGLELREDID 183 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCcccc-----cccCcccccccccC-CCccccccCCCCC
Confidence 46788899999999999999999999999999999999887542211 12223333332221 1110 110 1125
Q ss_pred ccccCCCEEEEEeeeEEC----cE-EEEEEEEEEECCc
Q psy18115 100 LILKREDVVKIDLGAHVD----GF-IAVVAHTIVVGAA 132 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~----GY-~aD~~RT~~vG~~ 132 (365)
.+|++|.++.|+-+..+. |. -.=+..|++|.+.
T Consensus 184 ~~Le~GMV~~iEP~i~~~~~~~g~gG~ried~v~Vt~~ 221 (228)
T cd01090 184 TVLEPGMVVSMEPMIMLPEGQPGAGGYREHDILVINEN 221 (228)
T ss_pred CccCCCCEEEECCEEeecccCCCCcEEEeeeEEEECCC
Confidence 789999999999998763 32 2226788888653
No 45
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=96.65 E-value=0.038 Score=50.75 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcc--cccCCCCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNC--ICHFSPLRSDPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~--~~H~~p~~~~~~ 99 (365)
..|++.+++.++++++++.++||++..|+...+.+.+.+.|...+... ..+.++....+. +..+.. .+ .+
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~g~~~~~~~------~GHgiG~~~~e~p~i~~~~~-~~-~~ 188 (247)
T TIGR00500 117 EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREY------CGHGIGRKFHEEPQIPNYGK-KF-TN 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEeccCc------cCCccCcccCCCCccCCcCc-CC-CC
Confidence 467788888899999999999999999999999999988875432111 112233322221 111110 11 15
Q ss_pred ccccCCCEEEEEeeeEE------------------CcEEEEEEEEEEECCc
Q psy18115 100 LILKREDVVKIDLGAHV------------------DGFIAVVAHTIVVGAA 132 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~------------------~GY~aD~~RT~~vG~~ 132 (365)
.+|++|.++.|+.+..+ +++..-+..|++|.+.
T Consensus 189 ~~l~~gmv~~iEp~i~~~~~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~ 239 (247)
T TIGR00500 189 VRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDN 239 (247)
T ss_pred CEecCCCEEEEeeEEEcCCCcEEECCCCCEEEccCCCeEEEEeEEEEEcCC
Confidence 78999999999988765 2355567778888654
No 46
>PRK05716 methionine aminopeptidase; Validated
Probab=96.58 E-value=0.038 Score=50.87 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcc--cccC-CCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNC--ICHF-SPLRSDP 98 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~--~~H~-~p~~~~~ 98 (365)
..|++.+++.++++++++.++||++..||...+++.+++.|...+... +++.+.....+. +.++ .+. .
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~pG~~~~dv~~~~~~~~~~~g~~~~~~~------~GHgiG~~~~e~p~~~~~~~~~---~ 189 (252)
T PRK05716 119 EDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREY------CGHGIGRKFHEEPQIPHYGAPG---D 189 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeecCc------cccccCCccCCCCccCcCCCCC---C
Confidence 467788888999999999999999999999999999998875432111 112222222111 1111 122 2
Q ss_pred CccccCCCEEEEEeeeEE------------------CcEEEEEEEEEEECCcc
Q psy18115 99 DLILKREDVVKIDLGAHV------------------DGFIAVVAHTIVVGAAK 133 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~------------------~GY~aD~~RT~~vG~~~ 133 (365)
+.+|++|.++.|+.+..+ .++..-+.-|++|.+.-
T Consensus 190 ~~~le~Gmv~~vEp~i~~~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~G 242 (252)
T PRK05716 190 GPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDG 242 (252)
T ss_pred CCEecCCCEEEEccEEEcCCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCCc
Confidence 578999999999988764 23556677888887643
No 47
>PRK09795 aminopeptidase; Provisional
Probab=96.50 E-value=0.045 Score=53.35 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccc-cccccccccCCccceeeccCcccccCCCCC
Q psy18115 17 DLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC-FKKIKDMKKGIAFPTCISVNNCICHFSPLR 95 (365)
Q Consensus 17 ~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~-~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~ 95 (365)
+++.+.++++-+++.++.+++++.++||++-.|+...+.+.+.+.|-.. |. .+..+.+++.. |-.|..
T Consensus 236 ~~~~~~~~~~~~~v~~a~~~~~~~~rpG~~~~~v~~~~~~~~~~~g~~~~~~------h~~GHgiGl~~-----he~p~i 304 (361)
T PRK09795 236 SAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFG------HNTGHAIGIEV-----HEDPRF 304 (361)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCccCC------CCCCccCCccc-----cCCCCc
Confidence 4444568899999999999999999999999999999999998886432 21 12223333322 222321
Q ss_pred C-CCCccccCCCEEEEEeeeEECcE-EEEEEEEEEECCcc
Q psy18115 96 S-DPDLILKREDVVKIDLGAHVDGF-IAVVAHTIVVGAAK 133 (365)
Q Consensus 96 ~-~~~~~l~~GDiV~iD~g~~~~GY-~aD~~RT~~vG~~~ 133 (365)
. .++.+|++|.++.|+-|..+.|+ -.=+.-|++|.+..
T Consensus 305 ~~~~~~~l~~gmv~~iEpgiy~~~~~gvriEd~v~vt~~G 344 (361)
T PRK09795 305 SPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVTPQG 344 (361)
T ss_pred CCCCCCCcCCCCEEEECCEEEeCCCCEEEEeeEEEECCCC
Confidence 1 12578999999999999977664 34457788886543
No 48
>PRK12896 methionine aminopeptidase; Reviewed
Probab=96.38 E-value=0.062 Score=49.52 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCc---ccccC-CCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNN---CICHF-SPLRSD 97 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~---~~~H~-~p~~~~ 97 (365)
..+++.+.+.++++++++.++||++..|+...+.+.+++.|...+... ..+.+.....+ .+.++ .|.
T Consensus 124 ~~~~~~~~~~~a~~~~~~~~kpG~~~~~v~~~~~~~~~~~G~~~~~~~------~GHgiG~~~he~p~~~~~~~~~~--- 194 (255)
T PRK12896 124 EAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDL------TGHGVGRSLHEEPSVILTYTDPL--- 194 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCEeccCc------ccCCcCcccccCCCccccCCCCC---
Confidence 456778888889999999999999999999999999998875422111 11222222111 11111 121
Q ss_pred CCccccCCCEEEEEeeeEE------------------CcEEEEEEEEEEECCcc
Q psy18115 98 PDLILKREDVVKIDLGAHV------------------DGFIAVVAHTIVVGAAK 133 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~~------------------~GY~aD~~RT~~vG~~~ 133 (365)
.+.+|++|.++.|+.+... .++..-+..|++|.+..
T Consensus 195 ~~~~le~GmV~~iEp~i~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~~G 248 (255)
T PRK12896 195 PNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDG 248 (255)
T ss_pred CCCEecCCcEEEEeceEEcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcCCc
Confidence 1578999999999987742 34555688899997643
No 49
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.36 E-value=0.052 Score=51.37 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCc--ccccCCCCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNN--CICHFSPLRSDPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~--~~~H~~p~~~~~~ 99 (365)
..|++.+++.++++++++.++||++..|+...+.+++++.|...... ...+.+.++..+ .+.++.+. + +
T Consensus 159 ~~~~~~~~~~~a~~~~i~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~------~~GHgIGl~~hE~P~i~~~~~~--~-~ 229 (291)
T PRK12318 159 IKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQ------FVGHGVGIKFHENPYVPHHRNS--S-K 229 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCC------cccCCcCccccCCCcccCcCCC--C-C
Confidence 56788899999999999999999999999999999999887542111 112223333222 11122112 1 4
Q ss_pred ccccCCCEEEEEeeeEECc
Q psy18115 100 LILKREDVVKIDLGAHVDG 118 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~G 118 (365)
.+|++|.++.|+-+....+
T Consensus 230 ~~L~~GMV~~iEP~i~~~~ 248 (291)
T PRK12318 230 IPLAPGMIFTIEPMINVGK 248 (291)
T ss_pred CEeCCCCEEEECCEEEcCC
Confidence 6899999999998877653
No 50
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.31 E-value=0.02 Score=54.24 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCcee
Q psy18115 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYT 219 (365)
Q Consensus 140 ~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~~ 219 (365)
..++..+.+.++++++++.++||++..||...+++.+.+.|..+ ++..+....+ ...++... ..++.+
T Consensus 3 ~~r~Aa~I~~~a~~~~~~~i~pG~te~ei~~~~~~~i~~~G~~~-----afp~~is~n~----~~~H~~p~---~~d~~~ 70 (291)
T cd01088 3 KYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP-----AFPVNLSINE----CAAHYTPN---AGDDTV 70 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHcCCCC-----CCCceeccCC----EeeCCCCC---CCCCcc
Confidence 56788888999999999999999999999999999999988532 2222222221 11121110 013568
Q ss_pred eecCcEEEEeeeeec
Q psy18115 220 FETNEVYAMDVLVST 234 (365)
Q Consensus 220 le~GmV~tIEP~i~~ 234 (365)
|++|+++.|+.++..
T Consensus 71 l~~GDvV~iD~G~~~ 85 (291)
T cd01088 71 LKEGDVVKLDFGAHV 85 (291)
T ss_pred cCCCCEEEEEEEEEE
Confidence 999999999999754
No 51
>PLN03158 methionine aminopeptidase; Provisional
Probab=96.30 E-value=0.023 Score=55.97 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=67.0
Q ss_pred EEEEEEEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCCccc-cCccccccccceec
Q psy18115 120 IAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPL-EGMLSHQLKQGQID 198 (365)
Q Consensus 120 ~aD~~RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~~~~-~~~~GHgIG~~~he 198 (365)
.++..++..+..+.+ -...+++.+.+.++++++.+.++||++..||.+++++.+.+.|..+. .++ |+....+--
T Consensus 128 ~~~~~~~~~IKsp~E---Ie~mR~A~~ia~~al~~a~~~irpGvTe~EI~~~v~~~~~~~Ga~ps~l~y--~~fp~svct 202 (396)
T PLN03158 128 NSDLQHSVEIKTPEQ---IQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNY--HFFPKSCCT 202 (396)
T ss_pred ccccccceeeCCHHH---HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCccccccc--cCCCceeee
Confidence 456667777765432 14567888888999999999999999999999999998877764321 111 111100000
Q ss_pred ccceeecCCCcccccccCceeeecCcEEEEeeeeec
Q psy18115 199 GEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVST 234 (365)
Q Consensus 199 ~~~pii~~~~~~~~~~~~~~~le~GmV~tIEP~i~~ 234 (365)
+...++.+.. .++.+|++|+++.|+.++..
T Consensus 203 s~N~~i~Hgi------p~~r~L~~GDiV~iDvg~~~ 232 (396)
T PLN03158 203 SVNEVICHGI------PDARKLEDGDIVNVDVTVYY 232 (396)
T ss_pred cccccccCCC------CCCccCCCCCEEEEEEeEEE
Confidence 0011122211 13568999999999999864
No 52
>PRK12897 methionine aminopeptidase; Reviewed
Probab=96.26 E-value=0.043 Score=50.55 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcc--cccCCCCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNC--ICHFSPLRSDPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~--~~H~~p~~~~~~ 99 (365)
..|++-+++.++++.+++.++||++..|+...+++.+++.|...+... ..+.+..+..+. +.++.+. ++ .
T Consensus 118 ~~~~~~~~~~~a~~~~i~~~kpG~~~~dv~~a~~~~~~~~g~~~~~~~------~GHgiGl~~hE~P~i~~~~~~-~~-~ 189 (248)
T PRK12897 118 EAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDF------TGHGIGKEIHEEPAIFHFGKQ-GQ-G 189 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHcCCccCCCe------EECccCCcccCCCccCCCCCC-CC-C
Confidence 466777888999999999999999999999999999988875432211 112223332221 1121111 11 4
Q ss_pred ccccCCCEEEEEeeeE-----------------ECc-EEEEEEEEEEECCc
Q psy18115 100 LILKREDVVKIDLGAH-----------------VDG-FIAVVAHTIVVGAA 132 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~-----------------~~G-Y~aD~~RT~~vG~~ 132 (365)
.+|++|.++.+.-|.. ++| +..-+..|+.|.+.
T Consensus 190 ~~l~~Gmv~tiEP~~~~~~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~ 240 (248)
T PRK12897 190 PELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKD 240 (248)
T ss_pred CCcCCCCEEEECCeEecCCCceEECCCCcEEEcCCCCeEeecceEEEEeCC
Confidence 6899999999999886 244 56667788888653
No 53
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=96.23 E-value=0.051 Score=53.64 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCC-CCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRS-DPD 99 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~-~~~ 99 (365)
+.++++-+++.++.+++++.++||++-.||...+.+.+.+.|... . .+..+++++.......+..|... ..+
T Consensus 270 ~~~~~~~~~~~~a~~~~i~~ikpG~~~~dv~~~~~~~~~~~G~~~-~------h~~GhgiGl~~~~~~~e~~~~l~~~~~ 342 (391)
T TIGR02993 270 QAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAFFAVLKKYGIHK-D------SRTGYPIGLSYPPDWGERTMSLRPGDN 342 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCcc-C------CCceeeeccCcCCCCCCccccccCCCC
Confidence 357788899999999999999999999999999999998876431 0 12223333332110001111110 115
Q ss_pred ccccCCCEEEEEeeeEECcEEEEEEEEEEECCc
Q psy18115 100 LILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA 132 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~GY~aD~~RT~~vG~~ 132 (365)
.+|++|-++.|.-|....|+-.=+.-|++|.+.
T Consensus 343 ~~L~~GMv~tvEpgiy~~~~Gvried~v~VT~~ 375 (391)
T TIGR02993 343 TVLKPGMTFHFMTGLWMEDWGLEITESILITET 375 (391)
T ss_pred ceecCCCEEEEcceeEeCCCCeEEeeEEEECCC
Confidence 789999999999999887766667788998654
No 54
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=96.23 E-value=0.088 Score=48.19 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcc-cccc------------ccccccCCccceeeccCcc
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK-CFKK------------IKDMKKGIAFPTCISVNNC 87 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~-~~~~------------~~~~~~g~~~p~~~s~n~~ 87 (365)
+..+++.+++.++++++++.++||++-.||...+.+.+.+.+.+ .+.. ...+..++.+.+.++..+
T Consensus 103 ~~~~~~~~~~~~a~~~~i~~~rpG~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiGl~~~e- 181 (243)
T cd01087 103 DEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHD- 181 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccCccccc-
Confidence 35677888899999999999999999999999999888776432 0100 000011222333333222
Q ss_pred cccCCCCCCCCCccccCCCEEEEEeeeEECc-----------EEEEEEEEEEECCc
Q psy18115 88 ICHFSPLRSDPDLILKREDVVKIDLGAHVDG-----------FIAVVAHTIVVGAA 132 (365)
Q Consensus 88 ~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~G-----------Y~aD~~RT~~vG~~ 132 (365)
.++....+++ +.+|++|-++.|..|....+ +-.-+.-|++|.+.
T Consensus 182 ~p~~~~~~~~-~~~l~~GMv~~iEp~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~~ 236 (243)
T cd01087 182 VGGYLRYLRR-ARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTED 236 (243)
T ss_pred CccccccCCC-CCCCCCCCEEEECCEEEeCCcccccccccceeEEEeeeEEEEcCC
Confidence 1111012222 57899999999999987664 55667888988653
No 55
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.17 E-value=0.12 Score=47.12 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcc---cccCCCCCCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNC---ICHFSPLRSD 97 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~---~~H~~p~~~~ 97 (365)
+.+|++.+++.++.+++++.++||++-.|+.+.+++.+.+.|...+... +.+.+.....+. ..+..|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~G~~~~~~~------~GHgiG~~~~e~p~~~~~~~~~--- 178 (238)
T cd01086 108 EEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREF------GGHGIGRKFHEEPQIPNYGRPG--- 178 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcceecCc------cccCCCCccccCCCcCCccCCC---
Confidence 3467888889999999999999999999999999999998876422111 111122221110 0011122
Q ss_pred CCccccCCCEEEEEeeeEE------------------CcEEEEEEEEEEECCc
Q psy18115 98 PDLILKREDVVKIDLGAHV------------------DGFIAVVAHTIVVGAA 132 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~~------------------~GY~aD~~RT~~vG~~ 132 (365)
.+.+|++|.++.++.+..+ +.+..-+..|++|.+.
T Consensus 179 ~~~~le~Gmv~~iep~i~~~~~~~~~~~~~~~~~~~~g~~g~~~edtv~Vte~ 231 (238)
T cd01086 179 TGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITED 231 (238)
T ss_pred CCCEecCCCEEEEeeEEECCCCceEECCCCCEEEcCCCCEEEeeeeEEEEcCC
Confidence 1578999999999998764 1234456668888654
No 56
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=96.01 E-value=0.09 Score=46.70 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcc-ccccccccccCCccceeeccCcccccCCCCCCCCCc
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK-CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDL 100 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~-~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~ 100 (365)
..+++.+.+.++++.+++.++||++..||.+.+.+.+.+.|.. .+.. .+.+.+.....+..+. ++..+ .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~pG~~~~~v~~~~~~~~~~~g~~~~~~~------~~GH~iG~~~~~~~P~-i~~~~-~~~ 174 (207)
T PF00557_consen 103 EQRRAYEAAREALEAAIEALRPGVTGSDVYEAVREVLEEYGLEEPYPH------GLGHGIGLEFHEPGPN-IARPG-DDT 174 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH-STTSBHHHHHHHHHHHHHHTTEGEEBTS------SSEEEESSSSSEEEEE-ESSTT-TSS
T ss_pred cccchhhhhHHHHHhHhhhcccccccchhhHHHHHHHHhhcccceeee------ccccccccccccccee-eeccc-ccc
Confidence 3788888889999999999999999999999999999988752 1221 1112222111110011 11011 257
Q ss_pred cccCCCEEEEEeeeE-ECcE-EEEEEEEEEE
Q psy18115 101 ILKREDVVKIDLGAH-VDGF-IAVVAHTIVV 129 (365)
Q Consensus 101 ~l~~GDiV~iD~g~~-~~GY-~aD~~RT~~v 129 (365)
+|++|-++.++.+.. ..|+ -.-+.-|++|
T Consensus 175 ~l~~gmv~~iep~~~~~~~~~g~~~ed~v~V 205 (207)
T PF00557_consen 175 VLEPGMVFAIEPGLYFIPGWGGVRFEDTVLV 205 (207)
T ss_dssp B--TTBEEEEEEEEEEETTSEEEEEBEEEEE
T ss_pred eecCCCceeEeeeEEccCCCcEEEEEEEEEE
Confidence 999999999999876 5554 5555556655
No 57
>PRK14575 putative peptidase; Provisional
Probab=95.98 E-value=0.068 Score=53.03 Aligned_cols=103 Identities=8% Similarity=0.053 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcccc-ccccccccCCccceeeccCcccccCCCCCC-CCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCF-KKIKDMKKGIAFPTCISVNNCICHFSPLRS-DPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~-~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~-~~~ 99 (365)
..|++.+++.++++++++.++||++..|+.+.+.+.+.+.|...+ ... ++.|+.+++ +. |-.|... ..+
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~rpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~l--g~-----~e~P~i~~~~~ 356 (406)
T PRK14575 286 ITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVFL--GL-----EESPFVSTHAT 356 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcccCCC--CC-----ccCCCCCCCCC
Confidence 567888889999999999999999999999999999988875422 111 112222211 11 1122211 114
Q ss_pred ccccCCCEEEEEeeeEECc-EEEEEEEEEEECCcc
Q psy18115 100 LILKREDVVKIDLGAHVDG-FIAVVAHTIVVGAAK 133 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~G-Y~aD~~RT~~vG~~~ 133 (365)
.+|++|.++.|..|....| +-.=+.-|++|.+.-
T Consensus 357 ~~Le~GMv~tiEpgiy~~g~gGvriEDtvlVT~~G 391 (406)
T PRK14575 357 ESFTSGMVLSLETPYYGYNLGSIMIEDMILINKEG 391 (406)
T ss_pred CCcCCCCEEEECCeeecCCCcEEEEEeEEEEcCCC
Confidence 7899999999999886555 335678899996643
No 58
>PRK07281 methionine aminopeptidase; Reviewed
Probab=95.96 E-value=0.075 Score=50.15 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcc--cccC-CCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNC--ICHF-SPLRSDP 98 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~--~~H~-~p~~~~~ 98 (365)
..|++.+++.++++++++.++||++..||...+++.+.+.|...+.. ...+.++....+. ++++ .+. .
T Consensus 149 ~~~~l~~~~~ea~~~ai~~~kpG~~~~di~~a~~~~~~~~G~~~~~~------~~GHGIGl~~hE~P~i~~~~~~~---~ 219 (286)
T PRK07281 149 EVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRD------LVGHGVGPTMHEEPMVPNYGTAG---R 219 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCccCCC------eeeeeCCCccCCCCcCCCcccCC---C
Confidence 56789999999999999999999999999999999998876432211 1112233322221 1221 122 1
Q ss_pred CccccCCCEEEEEeeeEE
Q psy18115 99 DLILKREDVVKIDLGAHV 116 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~ 116 (365)
+.+|++|.++.|.-+...
T Consensus 220 ~~~Le~GMV~tiEPgiy~ 237 (286)
T PRK07281 220 GLRLREGMVLTIEPMINT 237 (286)
T ss_pred CCEECCCCEEEECCeeEc
Confidence 468999999999999864
No 59
>PRK15173 peptidase; Provisional
Probab=95.58 E-value=0.14 Score=49.29 Aligned_cols=104 Identities=8% Similarity=0.065 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcccc-ccccccccCCccceeeccCcccccCCCCCC-CC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCF-KKIKDMKKGIAFPTCISVNNCICHFSPLRS-DP 98 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~-~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~-~~ 98 (365)
+..|++-+++.++++++++.++||++..|+...+.+.+.+.|...+ ... ++.|+... ++. |-.|... ..
T Consensus 202 ~~~~~~y~~v~ea~~~~~~~irPG~~~~dv~~a~~~~~~~~G~~~~~~~~--~GHGiG~~--lg~-----~E~P~i~~~~ 272 (323)
T PRK15173 202 EITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGH--LGHGNGVF--LGL-----EESPFVSTHA 272 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCC--CCCcCCCC--CCc-----CCCCCCCCCC
Confidence 3567888999999999999999999999999999999998875322 111 11222111 111 2222211 11
Q ss_pred CccccCCCEEEEEeeeEECc-EEEEEEEEEEECCcc
Q psy18115 99 DLILKREDVVKIDLGAHVDG-FIAVVAHTIVVGAAK 133 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~~G-Y~aD~~RT~~vG~~~ 133 (365)
+.+|++|.++.|..|....| +-.=+.-|++|.+.-
T Consensus 273 ~~~Le~GMV~tiEPgiy~~g~ggvriEDtvlVTe~G 308 (323)
T PRK15173 273 TESFTSGMVLSLETPYYGYNLGSIMIEDMILINKEG 308 (323)
T ss_pred CCccCCCCEEEECCEEEcCCCcEEEEeeEEEEcCCc
Confidence 47899999999999876444 234578899986543
No 60
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=95.53 E-value=0.18 Score=45.78 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCCc
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDL 100 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~ 100 (365)
...+++.+.+.++++++++.++||++-.||...+++.+.+.|...+.... ..++.+ .++ +.|....-..
T Consensus 120 ~~~~~~~~~~~ea~~~~~~~~kpG~~~~dv~~a~~~~~~~~G~~~~~~~~--~h~~g~--~~~-------~~~~~~~~~~ 188 (228)
T cd01089 120 GKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVL--SHQLKR--VVS-------SGEGKAKLVE 188 (228)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCEEecCcc--ccCcCc--eEe-------cCCCCccchh
Confidence 36778888889999999999999999999999999999998854322211 011111 111 1111100036
Q ss_pred cccCCCEEEEEeeeEECc-EEEEEEEEEEECCcc
Q psy18115 101 ILKREDVVKIDLGAHVDG-FIAVVAHTIVVGAAK 133 (365)
Q Consensus 101 ~l~~GDiV~iD~g~~~~G-Y~aD~~RT~~vG~~~ 133 (365)
.|++|.++.+..+...+| +.+-+.-|+.|.+.-
T Consensus 189 ~l~~gmvf~~ep~~~~~g~~~~~~~~Tv~vt~~G 222 (228)
T cd01089 189 CVKHGLLFPYPVLYEKEGEVVAQFKLTVLLTPNG 222 (228)
T ss_pred hccCCcccccceeEccCCCeEEEEEEEEEEcCCC
Confidence 799999999999998777 788899999997643
No 61
>PRK08671 methionine aminopeptidase; Provisional
Probab=95.50 E-value=0.14 Score=48.43 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCC---C-CC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPL---R-SD 97 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~---~-~~ 97 (365)
..+++.+.+.++++.+++.++||++..|+.+.+++.+.+.|...+.+. .| +.+ .....|..|. . ..
T Consensus 102 ~~~~l~~a~~~a~~aai~~ikpG~~~~dv~~~i~~vi~~~G~~~~~~~----~G--Hgi----G~~~~he~p~ip~~~~~ 171 (291)
T PRK08671 102 KYEDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNL----TG--HGL----ERYELHAGPSIPNYDEG 171 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccCCC----cc--cCc----CCCcccCCCccCccCCC
Confidence 456788888889999999999999999999999999998875432111 11 111 1111232221 1 11
Q ss_pred CCccccCCCEEEEEeeeE-ECcEEEEEEEEEEECC
Q psy18115 98 PDLILKREDVVKIDLGAH-VDGFIAVVAHTIVVGA 131 (365)
Q Consensus 98 ~~~~l~~GDiV~iD~g~~-~~GY~aD~~RT~~vG~ 131 (365)
.+.+|++|+++.|+.++. -.|+..|..+|-+...
T Consensus 172 ~~~~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~~ 206 (291)
T PRK08671 172 GGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYSL 206 (291)
T ss_pred CCceeCCCCEEEEcceEECCCCeEecCCceEEEee
Confidence 257899999999998764 4778888777766643
No 62
>PRK14576 putative endopeptidase; Provisional
Probab=95.44 E-value=0.17 Score=50.20 Aligned_cols=104 Identities=6% Similarity=0.011 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcccc-ccccccccCCccceeeccCcccccCCCCCCCCC
Q psy18115 21 TKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCF-KKIKDMKKGIAFPTCISVNNCICHFSPLRSDPD 99 (365)
Q Consensus 21 e~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~-~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~ 99 (365)
+..+++-+++.++++++++.++||++-.|+...+.+.+.+.|-..+ ...- +.|...+ ++..+ .+...|. .+
T Consensus 284 ~~~~~~~~~~~~a~~a~~~~~rPG~~~~dv~~a~~~~~~~~G~~~~~~~~~--GHgiG~~--l~~~e-~P~i~~~---~~ 355 (405)
T PRK14576 284 KLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHL--GHGDGVF--LGLEE-VPFVSTQ---AT 355 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCccccCCCC--CCCCCCC--CCcCc-CCCcCCC---CC
Confidence 3567888899999999999999999999999999999988875422 1110 1121111 11111 1111122 15
Q ss_pred ccccCCCEEEEEeeeEECc-EEEEEEEEEEECCc
Q psy18115 100 LILKREDVVKIDLGAHVDG-FIAVVAHTIVVGAA 132 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~~G-Y~aD~~RT~~vG~~ 132 (365)
.+|++|.++.++.+....| .-.-+.-|++|.+.
T Consensus 356 ~~Le~GMv~~vEp~~y~~g~ggvriEDtvlVTe~ 389 (405)
T PRK14576 356 ETFCPGMVLSLETPYYGIGVGSIMLEDMILITDS 389 (405)
T ss_pred CccCCCCEEEECCceeecCCCEEEEeeEEEECCC
Confidence 7899999999997765544 23346788998654
No 63
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=94.99 E-value=0.27 Score=48.33 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccc-cccccccccCCccceeeccCcccccCCCC--CCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC-FKKIKDMKKGIAFPTCISVNNCICHFSPL--RSDP 98 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~-~~~~~~~~~g~~~p~~~s~n~~~~H~~p~--~~~~ 98 (365)
..|+.-.++.+++++++++++||++-.|+...+.+.|.+.|... |... ++.|..++ .. .|-.|. ....
T Consensus 263 ~~~~iy~~V~~aq~aa~~~~rpG~~~~~vd~~ar~~i~~~g~~~~~~h~--~GHgvG~~--l~-----vhE~p~~~~~~~ 333 (384)
T COG0006 263 EQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHG--TGHGVGFV--LD-----VHEHPQYLSPGS 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhcCCcccccCC--ccccCCCC--cc-----cCcCccccCCCC
Confidence 56688899999999999999999999999999999999875542 2221 11222222 22 233331 1112
Q ss_pred CccccCCCEEEEEeeeEE-CcEEEEEEEEEEECCc
Q psy18115 99 DLILKREDVVKIDLGAHV-DGFIAVVAHTIVVGAA 132 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~-~GY~aD~~RT~~vG~~ 132 (365)
+.+|++|-++.++.|..+ ..+-.=+.-+++|.+.
T Consensus 334 ~~~L~~GMv~t~Epg~y~~g~~GirIEd~vlVte~ 368 (384)
T COG0006 334 DTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTED 368 (384)
T ss_pred CccccCCcEEEeccccccCCCceEEEEEEEEEcCC
Confidence 578999999999999765 4488888999999763
No 64
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=94.34 E-value=0.45 Score=46.92 Aligned_cols=105 Identities=8% Similarity=0.038 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccC-cccccCCCC--CCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVN-NCICHFSPL--RSDP 98 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n-~~~~H~~p~--~~~~ 98 (365)
..+.+...+.+|++.+++.++||++..||...+++.+.+.|.....+..+ .++.- .....+ .++.++.+. ....
T Consensus 139 ~~~~l~~aa~~A~~aai~~vkPG~~~~dI~~ai~~v~~~~G~~~v~~~~g--H~igr-~~~~g~~~Ii~~~~~~~~~~~~ 215 (389)
T TIGR00495 139 RKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLS--HQLKQ-HVIDGEKVIISNPSDSQKKDHD 215 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHcCCeecCCcee--ecccc-eeccCCCeeeecCCccccCCCC
Confidence 45566777788999999999999999999999999999998764332110 12110 111111 122333221 0001
Q ss_pred CccccCCCEEEEEeeeE-ECcEEEEEE-EEEEE
Q psy18115 99 DLILKREDVVKIDLGAH-VDGFIAVVA-HTIVV 129 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~-~~GY~aD~~-RT~~v 129 (365)
+..|++|+++.||..+. -.|+.-+.. ||-+.
T Consensus 216 ~~~le~gev~aIEp~vs~G~g~v~~~~~~~tiy 248 (389)
T TIGR00495 216 TAEFEENEVYAVDILVSTGEGKAKDADQRTTIY 248 (389)
T ss_pred CCEecCCCEEEEeeeecCCCceEEECCCeeEEE
Confidence 45799999999999875 456665554 44444
No 65
>PRK10879 proline aminopeptidase P II; Provisional
Probab=94.23 E-value=0.64 Score=46.61 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccc-cc--------cccc----cccCCccceeeccCccc
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC-FK--------KIKD----MKKGIAFPTCISVNNCI 88 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~-~~--------~~~~----~~~g~~~p~~~s~n~~~ 88 (365)
..|++-+++.++.+++++.++||++..+|...+.+.+.+...+. +. .... +..|..+.+++.+
T Consensus 283 ~q~~~y~~vl~a~~aai~~~kpG~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~GH~iGldv---- 358 (438)
T PRK10879 283 AQREIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDV---- 358 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCccccCcCc----
Confidence 45677888889999999999999999999988876654321110 00 0000 0122222233222
Q ss_pred ccCCCCCC-CCCccccCCCEEEEEeeeEEC----------cEEEEEEEEEEECCc
Q psy18115 89 CHFSPLRS-DPDLILKREDVVKIDLGAHVD----------GFIAVVAHTIVVGAA 132 (365)
Q Consensus 89 ~H~~p~~~-~~~~~l~~GDiV~iD~g~~~~----------GY~aD~~RT~~vG~~ 132 (365)
|-.|... ..+++|++|-++.|.-|..+. |+-.=+.-|++|.+.
T Consensus 359 -Hd~~~~~~~~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~ 412 (438)
T PRK10879 359 -HDVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITET 412 (438)
T ss_pred -CcCCCcCCCCCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECCC
Confidence 3223211 115789999999999998753 455567778988654
No 66
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=94.18 E-value=0.41 Score=45.36 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCC---CCCC-CC
Q psy18115 23 YKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFS---PLRS-DP 98 (365)
Q Consensus 23 ~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~---p~~~-~~ 98 (365)
.++..+.+.++++++++.++||++..||...+++.+.+.|...+.+. .| +.+ .....|+- |+.. ..
T Consensus 106 ~~~l~~a~~~A~~aai~~~kPGv~~~dV~~ai~~vi~~~G~~~i~~~----~G--Hgi----g~~~~h~g~~ip~i~~~~ 175 (295)
T TIGR00501 106 YDNLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNL----TG--HSM----APYRLHGGKSIPNVKERD 175 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCeeecCC----CC--cce----ecccccCCCccCeecCCC
Confidence 47788888899999999999999999999999999999876532221 11 111 11112321 2211 11
Q ss_pred CccccCCCEEEEEeeeE-ECcEEEEEEEEEEE
Q psy18115 99 DLILKREDVVKIDLGAH-VDGFIAVVAHTIVV 129 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~-~~GY~aD~~RT~~v 129 (365)
+.+|++|+++.|+.+.. -.|+..|..+|-+.
T Consensus 176 ~~~le~GmV~aIEP~~~~G~G~v~~~~~~~iy 207 (295)
T TIGR00501 176 TTKLEEGDVVAIEPFATDGVGYVTDGGEVSIY 207 (295)
T ss_pred CCEeCCCCEEEEceeEECCcCeEecCCCeEEE
Confidence 47899999999998764 35777776665444
No 67
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=93.41 E-value=0.61 Score=46.90 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcc----ccccccccccCCccceeeccCcccccC---CCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK----CFKKIKDMKKGIAFPTCISVNNCICHF---SPL 94 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~----~~~~~~~~~~g~~~p~~~s~n~~~~H~---~p~ 94 (365)
.++...+++.+|++++++.++||++..||.+.+++.|.+.|.. .|+- ..+..-++-++.....|. .|.
T Consensus 264 ~~~~L~eAv~eA~~aaI~~~kpGv~~~dI~~AIqevies~G~e~~Gk~f~~-----k~I~nltGHgIG~y~iHe~k~iP~ 338 (470)
T PTZ00053 264 KYDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIESYEVEIKGKTYPI-----KSIRNLNGHSIGPYIIHGGKSVPI 338 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcccCccccc-----ccccCCcccCCCCccccCCCcCCe
Confidence 5667888889999999999999999999999999999998742 1100 000000111222212343 343
Q ss_pred CC-CCCccccCCCEEEEEeeeE-ECcEEEEEEEEEEECC
Q psy18115 95 RS-DPDLILKREDVVKIDLGAH-VDGFIAVVAHTIVVGA 131 (365)
Q Consensus 95 ~~-~~~~~l~~GDiV~iD~g~~-~~GY~aD~~RT~~vG~ 131 (365)
.. ....+|++|+++.|+..+. =+||..|-.+|-....
T Consensus 339 v~~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~~ 377 (470)
T PTZ00053 339 VKGGENTRMEEGELFAIETFASTGRGYVNEDLECSHYMK 377 (470)
T ss_pred eCCCCCCEecCCCEEEEcceeeCCCCeEecCCCceeeeE
Confidence 21 1146899999999998875 5788888666555543
No 68
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=92.94 E-value=1.4 Score=39.86 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHHhcC-Cc--cccCccccccccceecccceeecCCCccccccc
Q psy18115 141 KANAILAAHYASEAALRLMKPG--NDTYLITDTVQKICKDFE-CK--PLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEH 215 (365)
Q Consensus 141 ~~~l~~~~~~a~~~~i~~lkPG--~~~~dI~~~i~~~~~~~G-~~--~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~ 215 (365)
+.+--..+.++++.+.+.++|| ++-.||.+.+++++...| +. .+...+.=|. ...+++.... ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v~~g~--------n~~~~H~~p~---~~ 74 (224)
T cd01085 6 HIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGFGP--------NGAIVHYSPT---EE 74 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEeHHHHHHHHHHHHHHcCCCcCCCcceEEEecC--------ccCcCCCCcC---cc
Confidence 3344445568888889999999 999999999998887654 31 0111111111 0111111100 00
Q ss_pred CceeeecCcEEEEeeeeec
Q psy18115 216 EKYTFETNEVYAMDVLVST 234 (365)
Q Consensus 216 ~~~~le~GmV~tIEP~i~~ 234 (365)
++.+|++|+++.|+.+...
T Consensus 75 ~~r~l~~GD~V~iD~g~~~ 93 (224)
T cd01085 75 SNRKISPDGLYLIDSGGQY 93 (224)
T ss_pred cCcccCCCCEEEEEeCccC
Confidence 2568999999999998754
No 69
>PRK13607 proline dipeptidase; Provisional
Probab=88.89 E-value=2.8 Score=42.15 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFD 60 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~ 60 (365)
..++.-+++.++.+++++.++||++..|+...+.+.|.+
T Consensus 269 ~~~~ly~~v~~aq~aai~~ikPG~~~~dv~~aa~~~i~~ 307 (443)
T PRK13607 269 DFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAK 307 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 345778889999999999999999999999888766643
No 70
>KOG1189|consensus
Probab=78.17 E-value=10 Score=39.98 Aligned_cols=105 Identities=14% Similarity=0.232 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeec--cCcccccCCCCCCCCC
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCIS--VNNCICHFSPLRSDPD 99 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s--~n~~~~H~~p~~~~~~ 99 (365)
.|.+|-...-.+.++++..++||....++-..+..++.+.+-+.-... .+.+.|.+++- .++.+. +... +
T Consensus 258 emq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~---~k~lG~~iGlEFREssl~i---naKn--d 329 (960)
T KOG1189|consen 258 EMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNF---TKNLGFGIGLEFRESSLVI---NAKN--D 329 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhh---hhhcccccceeeecccccc---cccc--h
Confidence 567888888889999999999999999999999999988754411111 11122222221 222221 1111 5
Q ss_pred ccccCCCEEEEEeeeE-------ECcEEEEEEEEEEECCccc
Q psy18115 100 LILKREDVVKIDLGAH-------VDGFIAVVAHTIVVGAAKH 134 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~-------~~GY~aD~~RT~~vG~~~~ 134 (365)
++|++|.+..|.+|.. -+-|.--++-|+.||+.++
T Consensus 330 ~~lk~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~p 371 (960)
T KOG1189|consen 330 RVLKKGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGEDPP 371 (960)
T ss_pred hhhccCcEEEEeeccccccCcccccchhhhccceeeecCCCc
Confidence 8999999999999963 2347777888999987654
No 71
>KOG2775|consensus
Probab=75.04 E-value=15 Score=34.56 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----hcCCccccCccccccccceecccceeecCCCccccccc
Q psy18115 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICK----DFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEH 215 (365)
Q Consensus 140 ~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~----~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~ 215 (365)
..++..++-+++.+.+...+|||++.-||-..++...+ +.|...- .|..-|..+.+--..+-+|++
T Consensus 87 d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aG---i~FPtG~SlN~cAAHyTpNaG------- 156 (397)
T KOG2775|consen 87 DLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAG---IGFPTGCSLNHCAAHYTPNAG------- 156 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHhcccccc---ccCCCcccccchhhhcCCCCC-------
Confidence 34455555566677788889999999998887766544 4555432 233344443221222334443
Q ss_pred CceeeecCcEEEEeeee
Q psy18115 216 EKYTFETNEVYAMDVLV 232 (365)
Q Consensus 216 ~~~~le~GmV~tIEP~i 232 (365)
+..+|+.+.|.-|+-+.
T Consensus 157 d~tVLqydDV~KiDfGt 173 (397)
T KOG2775|consen 157 DKTVLKYDDVMKIDFGT 173 (397)
T ss_pred CceeeeecceEEEeccc
Confidence 56899999999988664
No 72
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=62.18 E-value=20 Score=27.12 Aligned_cols=51 Identities=25% Similarity=0.253 Sum_probs=37.9
Q ss_pred ccccCCCEEEEEeeeEE-CcEEEEEE------EEEEECCccccccchHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy18115 100 LILKREDVVKIDLGAHV-DGFIAVVA------HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGND 164 (365)
Q Consensus 100 ~~l~~GDiV~iD~g~~~-~GY~aD~~------RT~~vG~~~~~~~t~~~~~l~~~~~~a~~~~i~~lkPG~~ 164 (365)
+..++||.|.|++-+.. +|-.-|.+ .+|.+|... ...+++.++..+++|-+
T Consensus 3 ~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~--------------~i~g~e~al~~m~~Ge~ 60 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQ--------------VIPGLEEALIGMKVGEK 60 (94)
T ss_dssp SSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSS--------------SSHHHHHHHTTSBTTEE
T ss_pred ccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCc--------------cccchhhhcccccCCCE
Confidence 56899999999999877 88777766 677777642 33467777777777753
No 73
>KOG2776|consensus
Probab=58.82 E-value=70 Score=31.04 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHh
Q psy18115 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKD 178 (365)
Q Consensus 140 ~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~ 178 (365)
+.+..-+.+-.++...++.++||++..||.......+.+
T Consensus 23 KYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E 61 (398)
T KOG2776|consen 23 KYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILE 61 (398)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCchHHHHHHhhhHHHHH
Confidence 456666777888999999999999999987666555543
No 74
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=52.74 E-value=52 Score=24.33 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=14.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy18115 41 CVENASAKDICEFSDQLLFD 60 (365)
Q Consensus 41 i~pG~te~el~~~~~~~i~~ 60 (365)
++.|.|..|++..+..-+.+
T Consensus 21 L~~GaTV~D~a~~iH~di~~ 40 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVK 40 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 46799999999887755543
No 75
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=48.16 E-value=28 Score=26.69 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=34.1
Q ss_pred ccchhHHHHHH----HHHhhCCcccccccccCChh-----hhhhhHHHHHHcCccccccceeecCCCeeE
Q psy18115 258 LKLKASRAFFG----EVQKKYSNMPFNLRFFENES-----QARLGINECVKHKLIEPFQVLYEKPGETVA 318 (365)
Q Consensus 258 lk~~~~~~~~~----~i~~~~~~~pF~~r~l~~~~-----~~~~~~~~~~~~~~~~~y~~l~~~~g~~~a 318 (365)
+.+++|+.++. -|.+|||.-||..+.++=.. ..+.-...+++..++ || |+..+|.+||
T Consensus 13 Vn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~f--YP-lV~i~~eiV~ 79 (93)
T PF07315_consen 13 VNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELF--YP-LVVINDEIVA 79 (93)
T ss_dssp SSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS---SS-EEEETTEEEE
T ss_pred cCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccc--cc-eEEECCEEEe
Confidence 44667776664 56799999999999884211 112224456677775 44 6678887776
No 76
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=43.35 E-value=1.9e+02 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhcCCccccCccccccccceecccceeecCCCcccccccCce
Q psy18115 139 GKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKY 218 (365)
Q Consensus 139 ~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~~~G~~~~~~~~GHgIG~~~he~~~pii~~~~~~~~~~~~~~ 218 (365)
++++..-..+.+-+-+.++..-|..+....-+.+++.+.+..- ..|..|-+|-- .-++.+-+
T Consensus 115 ~e~kaar~~a~~YmaAl~r~F~Ptls~eQs~~kl~~lL~~gk~---~~yy~q~~GAi-----RYVvad~g---------- 176 (200)
T PF07305_consen 115 PEQKAARALAIEYMAALMRQFEPTLSPEQSQEKLQKLLTKGKG---SRYYSQTEGAI-----RYVVADNG---------- 176 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHcCCC---CcceeeccCce-----EEEEecCC----------
Confidence 3566555666667778888899999999988888888776322 23456666631 12332211
Q ss_pred eeecCcEEEEeee
Q psy18115 219 TFETNEVYAMDVL 231 (365)
Q Consensus 219 ~le~GmV~tIEP~ 231 (365)
+.|.+|+|||.
T Consensus 177 --ekglTFAVEPI 187 (200)
T PF07305_consen 177 --EKGLTFAVEPI 187 (200)
T ss_pred --CceeEEEeeee
Confidence 45899999997
No 77
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=39.04 E-value=1.1e+02 Score=31.93 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccccc---cccccCCccceeeccCcccccCCCCCCCCCc
Q psy18115 24 KMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKI---KDMKKGIAFPTCISVNNCICHFSPLRSDPDL 100 (365)
Q Consensus 24 r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~~~---~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~ 100 (365)
.+--...-.+-+.+...++||.+-.+|...+..++.+.+-+.-+.+ .+..-|+-|. +. ..|-..-.+|
T Consensus 301 ~~Ny~fl~~lQk~i~~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR------~s---~~~~nvkn~r 371 (1001)
T COG5406 301 QKNYEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFR------SS---QKPFNVKNGR 371 (1001)
T ss_pred hhhHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHhcCCccCchHhhhhhhhcccccc------cc---ccceeccCCc
Confidence 3444455556677888999999999999999999988765421111 0000111111 00 0111111158
Q ss_pred cccCCCEEEEEeee
Q psy18115 101 ILKREDVVKIDLGA 114 (365)
Q Consensus 101 ~l~~GDiV~iD~g~ 114 (365)
+||.|+++.|.+|.
T Consensus 372 ~lq~g~~fnis~gf 385 (1001)
T COG5406 372 VLQAGCIFNISLGF 385 (1001)
T ss_pred eeccccEEEEeecc
Confidence 89999999988864
No 78
>PRK01490 tig trigger factor; Provisional
Probab=38.32 E-value=1.3e+02 Score=29.99 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=23.9
Q ss_pred CccccCCCEEEEEeeeEECcEEEEE----EEEEEECCc
Q psy18115 99 DLILKREDVVKIDLGAHVDGFIAVV----AHTIVVGAA 132 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~~GY~aD~----~RT~~vG~~ 132 (365)
++.++.||.|.+|+-...+|-.-+. ..+|.+|..
T Consensus 155 ~~~~~~gD~V~vd~~~~~~g~~~~~~~~~~~~~~lg~~ 192 (435)
T PRK01490 155 ERPAENGDRVTIDFVGSIDGEEFEGGKAEDFSLELGSG 192 (435)
T ss_pred cccCCCCCEEEEEEEEEECCEECcCCCCCceEEEEcCC
Confidence 4678999999999988877743222 256666653
No 79
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.11 E-value=33 Score=25.83 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCcccccccccCChh-----hhhhhHHHHHH
Q psy18115 263 SRAFFGEVQKKYSNMPFNLRFFENES-----QARLGINECVK 299 (365)
Q Consensus 263 ~~~~~~~i~~~~~~~pF~~r~l~~~~-----~~~~~~~~~~~ 299 (365)
-..+..+|.+.|+-=+|.+.||++.+ .....+.|+++
T Consensus 24 ~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE~~r 65 (81)
T cd06396 24 WASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEEALK 65 (81)
T ss_pred HHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHHHHH
Confidence 46789999999997799999998765 66777888877
No 80
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=30.48 E-value=2e+02 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.6
Q ss_pred CccccCCCEEEEEeeeEECcEEEEEE----EEEEECCc
Q psy18115 99 DLILKREDVVKIDLGAHVDGFIAVVA----HTIVVGAA 132 (365)
Q Consensus 99 ~~~l~~GDiV~iD~g~~~~GY~aD~~----RT~~vG~~ 132 (365)
++.++.||.|.+|+-...+|=..+.+ .+|.+|..
T Consensus 144 ~~~~~~gD~V~v~~~~~~dg~~~~~~~~~~~~~~lg~~ 181 (408)
T TIGR00115 144 RRAAEKGDRVTIDFEGFIDGEAFEGGKAENFSLELGSG 181 (408)
T ss_pred ccccCCCCEEEEEEEEEECCEECcCCCCCCeEEEECCC
Confidence 35789999999999877777443332 36666653
No 81
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=29.36 E-value=1.5e+02 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhccccc
Q psy18115 26 ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFK 67 (365)
Q Consensus 26 A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~~~~ 67 (365)
+..+++.+...+......+++..||...+++.|.+.+...|.
T Consensus 84 ~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~~~~ay~ 125 (154)
T PRK00464 84 IEAAVSRIERQLRASGEREVPSKEIGELVMEELKKLDEVAYV 125 (154)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 445566666666665556899999999999999998766543
No 82
>PF11434 CHIPS: Chemotaxis-inhibiting protein CHIPS; InterPro: IPR020986 Chemotaxis inhibitory protein (also knows as CHIPS) is a Staphylococcus aureus-secreted virulence factor that impairs the response of neutrophils and monocytes to FPR and C5a []. CHIPS has been shown to reduce neutrophil recruitment toward C5a in mouse models (its activity is more potent on human than on mouse cells). As such, its properties may make it a candidate new anti-inflammatory therapeutic compound []. CHIPS also plays an key role in bacterial invasion, by inhibiting FMLP- and C5a-induced calcium moblisation []. By influencing 2 related receptors with very different ligand specificities (C5aR and FPR), the protein has a unique role; nevertheless, neither the manner in which it binds such structurally different molecules nor how its expression is regulated are currently unknown []. The structure of a CHIPS fragment (residues 31-121) has been solved by NMR spectroscopy []. This fragment has the same activity in blocking the C5aR relative to full-length CHIPS, but lacks FPR antagonism []. The protein has a compact fold comprising 2 short alpha-helices packed onto a 4-stranded anti-parallel beta-sheet: strands-2 and -3 are joined by a loop with a well-defined conformation []. The protein shares a high degree of structural similarity with a number of proteins, including the C-terminal domain of staphylococcal superantigen-like proteins (SSLs) 5 and 7, staphyloccocal and streptococcal superantigens TSST-1 and SPE-C, and various domains of the staphylococcal extracellullar adherence protein (EAP) [].; PDB: 2K3U_A 1XEE_A.
Probab=28.77 E-value=69 Score=23.15 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=12.8
Q ss_pred CeeEEEEEEEEECCCC
Q psy18115 315 ETVAQFKFTVLLMPNG 330 (365)
Q Consensus 315 ~~~aq~e~Tv~vt~~g 330 (365)
..+||||..|++|++.
T Consensus 24 knsaqfekmviltenk 39 (91)
T PF11434_consen 24 KNSAQFEKMVILTENK 39 (91)
T ss_dssp S-GCCEEEEEEEESTT
T ss_pred cchhhheeEEEEEcCC
Confidence 4569999999999874
No 83
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=27.49 E-value=1.3e+02 Score=21.87 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q psy18115 138 MGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICK 177 (365)
Q Consensus 138 t~~~~~l~~~~~~a~~~~i~~lkPG~~~~dI~~~i~~~~~ 177 (365)
+.+|+.+++.+++.++.++..+..|.+..=+...++...+
T Consensus 11 ~~Rq~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~ 50 (73)
T PF12631_consen 11 NARQRQLLEQALEHLEDALEALENGLPLDLVAEDLREALE 50 (73)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999776555544554443
No 84
>KOG3908|consensus
Probab=27.46 E-value=1.3e+02 Score=28.40 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=32.6
Q ss_pred ceeecCCCeeEEEEEEEEECCCCceEecCCCCCCCCccCCCcC
Q psy18115 308 VLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSV 350 (365)
Q Consensus 308 ~l~~~~g~~~aq~e~Tv~vt~~g~~~lT~~~~~~~~~~~~~~~ 350 (365)
+|.+..|.-..-+-.-.-||++|+...+........+-|+++|
T Consensus 95 iLTDSGGFQmvSL~~l~~vtE~GV~F~SP~dg~~~lltPE~Si 137 (396)
T KOG3908|consen 95 ILTDSGGFQMVSLLKLATVTEDGVRFRSPHDGEDMLLTPEKSI 137 (396)
T ss_pred heecCCCeEEEeecceeeeccCceeecCCCCCCccccCchhhH
Confidence 5666767555555555669999999987777778888899988
No 85
>KOG2737|consensus
Probab=27.26 E-value=2e+02 Score=28.28 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhcc
Q psy18115 30 VNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64 (365)
Q Consensus 30 ~~~~~~~~~~~i~pG~te~el~~~~~~~i~~~g~~ 64 (365)
+-.+-.+++++++||+...++....+..+.++-++
T Consensus 308 VLda~navm~a~KpGv~W~Dmh~La~kvlle~laq 342 (492)
T KOG2737|consen 308 VLDASNAVMEAMKPGVWWVDMHKLAEKVLLEHLAQ 342 (492)
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHh
Confidence 44455678899999999999988888777665443
No 86
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=26.13 E-value=1.3e+02 Score=18.39 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy18115 26 ASEIVNRVLKLVIEKCVENASAKDICEFSDQLL 58 (365)
Q Consensus 26 A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~i 58 (365)
.+.+...++..+.+.+....++.+|...+++..
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C 35 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKAC 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 366788889999999999999999998877654
No 87
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=1e+02 Score=24.73 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=33.9
Q ss_pred eecCCCeeEEEEEEEEECCCCceEecCCCCC--CCCccCCCcCCcHHHHHHhhcc
Q psy18115 310 YEKPGETVAQFKFTVLLMPNGPHRITGIPFE--SDHYKSTLSVSDPELKALLLSS 362 (365)
Q Consensus 310 ~~~~g~~~aq~e~Tv~vt~~g~~~lT~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 362 (365)
++.+| -.|+|.|+|+.||.. +.+-.+ -.++-..-++..||+..+|+..
T Consensus 12 v~i~G---k~f~~DIvi~~dG~v--~rr~K~lskrK~GTSHkl~~eEle~~lee~ 61 (121)
T COG1504 12 VTIGG---KDFEHDIVIRPDGKV--ERREKELSKRKYGTSHKLALEELEELLEEG 61 (121)
T ss_pred EEECC---EeccccEEEecCCce--ehhhhhhhhhhcCcccccCHHHHHHHHhcC
Confidence 46677 489999999999974 333322 3445555778889999998753
No 88
>PRK15463 cold shock-like protein CspF; Provisional
Probab=25.20 E-value=73 Score=23.11 Aligned_cols=48 Identities=19% Similarity=0.028 Sum_probs=31.9
Q ss_pred cCCccceee-ccCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEE
Q psy18115 74 KGIAFPTCI-SVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIA 121 (365)
Q Consensus 74 ~g~~~p~~~-s~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~a 121 (365)
+||.|-..- +..++..|.+.......+.|++|+.|.+++.-.-+|+.|
T Consensus 16 kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~~G~~A 64 (70)
T PRK15463 16 SGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGLRGPTA 64 (70)
T ss_pred CceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECCCCcee
Confidence 566664332 245677787654322246799999999999887778543
No 89
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=24.71 E-value=2.3e+02 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy18115 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQ 56 (365)
Q Consensus 22 ~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~ 56 (365)
++|.-..-+. .++.+.+.|+|+||..||.++++.
T Consensus 27 KIRDNqKRV~-LLdNL~~YI~~~Ms~edi~~II~n 60 (95)
T PF04363_consen 27 KIRDNQKRVL-LLDNLSDYIKPDMSIEDIRAIIEN 60 (95)
T ss_pred HHhhhHHHHH-HHHHHHHHccCCCCHHHHHHHHHH
Confidence 4444444443 378889999999999999988664
No 90
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=23.90 E-value=1.5e+02 Score=21.87 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=27.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhccccccccccccCCccceeeccCcccccCCCCCCCCCccccCCCEEEE
Q psy18115 41 CVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKI 110 (365)
Q Consensus 41 i~pG~te~el~~~~~~~i~~~g~~~~~~~~~~~~g~~~p~~~s~n~~~~H~~p~~~~~~~~l~~GDiV~i 110 (365)
++.|.|..|+|..+..-+.+ +|.+....+ ..-... +..|++||+|.|
T Consensus 28 l~~g~tv~d~a~~IH~d~~~--------------~F~~A~v~~-----~~~vg~----d~~l~d~DVv~i 74 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEK--------------GFIEAVGGR-----RRLEGK----DVILGKNDILKF 74 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHh--------------ccEEEEEcc-----CEEECC----CEEecCCCEEEE
Confidence 45688888988876654432 333332222 011111 578999999986
No 91
>PRK14126 cell division protein ZapA; Provisional
Probab=22.66 E-value=1.7e+02 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=34.3
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH
Q psy18115 10 EEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICE 52 (365)
Q Consensus 10 ~~~~iKs~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~ 52 (365)
-+++|+.+++-+.|+++++..++-|..+.+.- |..+...++-
T Consensus 16 ~~Y~i~~~e~ee~l~~vA~~vd~km~ei~~~~-~~ls~~~iAV 57 (85)
T PRK14126 16 QQYTIVGDESTSHIRMVAAIVDDKMRELNEKN-PSLDTSKLAV 57 (85)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHH
Confidence 45688888888999999999999999998764 6677766653
No 92
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=22.48 E-value=1.3e+02 Score=23.90 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q psy18115 15 AEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEF 53 (365)
Q Consensus 15 Ks~~EIe~~r~A~~i~~~~~~~~~~~i~pG~te~el~~~ 53 (365)
-++.||..||+.-.+....|...+ |+|..-|..+
T Consensus 44 ls~~eIk~iRe~~~lSQ~vFA~~L-----~vs~~Tv~~W 77 (104)
T COG2944 44 LSPTEIKAIREKLGLSQPVFARYL-----GVSVSTVRKW 77 (104)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH-----CCCHHHHHHH
Confidence 578899999999999999999887 8888777765
No 93
>COG4518 Mu-like prophage FluMu protein gp41 [Function unknown]
Probab=22.24 E-value=26 Score=27.68 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=31.0
Q ss_pred EEEECCCCceEecCCCC-----------CCCCccCCCcCCcHHHHHHhhccCCC
Q psy18115 323 TVLLMPNGPHRITGIPF-----------ESDHYKSTLSVSDPELKALLLSSDLR 365 (365)
Q Consensus 323 Tv~vt~~g~~~lT~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (365)
-|++|++|+-.++++.. ....++-++++ -+|.+|-+++|+|
T Consensus 41 riv~tn~gp~~~aSp~l~G~eLLrRQia~vG~i~GP~S~--rqi~~Ls~rDl~r 92 (122)
T COG4518 41 RIVITNGGPHAYASPVLMGMELLRRQIAFVGNIQGPFSV--RQILKLSSRDLAR 92 (122)
T ss_pred heeeeCCCcceecChHHHHHHHHHHHHHHHhcCCCCcCH--HHHHhhhHHHHHH
Confidence 47889999999995431 24677888886 4899998888765
No 94
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.34 E-value=1.7e+02 Score=18.96 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHhccCCCCHHHHHHHHHH
Q psy18115 16 EDLVVTKYKMASEIVNRV-LKLVIEKCVENASAKDICEFSDQ 56 (365)
Q Consensus 16 s~~EIe~~r~A~~i~~~~-~~~~~~~i~pG~te~el~~~~~~ 56 (365)
|++|-+.+.+|....-.- ...+...+.+|-|..++......
T Consensus 5 t~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 5 TEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp -HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 678888888888777766 66666666668888877765443
No 95
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=21.34 E-value=1.1e+02 Score=21.39 Aligned_cols=49 Identities=29% Similarity=0.270 Sum_probs=29.3
Q ss_pred cCCccceeeccC-cccccCCCCCCCCCccccCCCEEEEEeeeEECcEEEE
Q psy18115 74 KGIAFPTCISVN-NCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAV 122 (365)
Q Consensus 74 ~g~~~p~~~s~n-~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~aD 122 (365)
+|+.|-.+-..+ +...|........-+.|+.||.|.+++...-.|+.|-
T Consensus 12 kgyGFI~~~~~~~diFfh~s~~~~~~~~~l~~G~~V~F~~~~~~~g~~A~ 61 (66)
T PF00313_consen 12 KGYGFITSDDGGEDIFFHISDLSGNGFRSLKEGDRVEFEVEEGKKGPQAV 61 (66)
T ss_dssp TTEEEEEETTSSSEEEEEGGGBCSSSSTS--TTSEEEEEEEECTTSEEEE
T ss_pred CCceEEEEcccceeEEeccccccccccccCCCCCEEEEEEEECCCCCEEE
Confidence 466665444444 4556654433221267999999999998877777654
No 96
>PRK05423 hypothetical protein; Provisional
Probab=21.34 E-value=1.7e+02 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHH
Q psy18115 32 RVLKLVIEKCVENASAKDICEFSDQ 56 (365)
Q Consensus 32 ~~~~~~~~~i~pG~te~el~~~~~~ 56 (365)
..++.+.+.|+||||..||.+++..
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~n 67 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIAN 67 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3567788899999999999988664
No 97
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=21.20 E-value=91 Score=23.41 Aligned_cols=38 Identities=16% Similarity=0.536 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhCCc---ccccccccCChh-----hhhhhHHHHHH
Q psy18115 262 ASRAFFGEVQKKYSN---MPFNLRFFENES-----QARLGINECVK 299 (365)
Q Consensus 262 ~~~~~~~~i~~~~~~---~pF~~r~l~~~~-----~~~~~~~~~~~ 299 (365)
.-+.|.++|.++|+. =+|++.|+++++ +.+..+.|+++
T Consensus 21 ~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~ 66 (82)
T cd06407 21 GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECID 66 (82)
T ss_pred CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHH
Confidence 456899999999986 479999998876 55666777665
No 98
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.72 E-value=1.3e+02 Score=21.67 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=31.1
Q ss_pred cCCccceeec-cCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEEE
Q psy18115 74 KGIAFPTCIS-VNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIA 121 (365)
Q Consensus 74 ~g~~~p~~~s-~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~a 121 (365)
+||.|-..-. ..+...|.+......-+.|++||.|.+++...-+|..|
T Consensus 16 kGfGFI~~~~g~~dvfvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G~~A 64 (70)
T PRK10354 16 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAA 64 (70)
T ss_pred CCcEEEecCCCCccEEEEEeeccccCCCCCCCCCEEEEEEEECCCCcee
Confidence 5666643222 34566777655332226799999999999887777544
No 99
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.70 E-value=1.1e+02 Score=22.26 Aligned_cols=47 Identities=15% Similarity=0.045 Sum_probs=30.7
Q ss_pred cCCccceee-ccCcccccCCCCCCCCCccccCCCEEEEEeeeEECcEE
Q psy18115 74 KGIAFPTCI-SVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFI 120 (365)
Q Consensus 74 ~g~~~p~~~-s~n~~~~H~~p~~~~~~~~l~~GDiV~iD~g~~~~GY~ 120 (365)
+||.|-..- +..+...|.+......-+.|++||.|.+++.-.-+|..
T Consensus 16 KGfGFI~~~~g~~DvFvH~s~l~~~g~~~l~~G~~V~f~v~~~~kG~~ 63 (70)
T PRK15464 16 SGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 (70)
T ss_pred CCeEEEccCCCCccEEEEehhehhcCCCCCCCCCEEEEEEEECCCCce
Confidence 576664222 23467788765532223479999999999987767753
No 100
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=20.41 E-value=32 Score=23.08 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy18115 18 LVVTKYKMASEIVNRVLKLVIEKCVENAS 46 (365)
Q Consensus 18 ~EIe~~r~A~~i~~~~~~~~~~~i~pG~t 46 (365)
++|+.+|+|-......+..+++.++.|..
T Consensus 16 dDLd~lR~~~dF~~~sl~~Li~aL~~G~~ 44 (47)
T PF14615_consen 16 DDLDELRKAPDFTDKSLPLLIDALQQGTD 44 (47)
T ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhccc
Confidence 57888898888888888888888887754
Done!