RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18115
(365 letters)
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 482 bits (1242), Expect = e-171
Identities = 216/360 (60%), Positives = 268/360 (74%), Gaps = 1/360 (0%)
Query: 4 KNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETS 63
K++ + + +++ VVTKYKMA EI N VLK V+E C A DICE D + +ET+
Sbjct: 3 KDEQQEQAYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETA 62
Query: 64 KCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVV 123
K FKK K+M+KGIAFPTCISVNNC+ HFSPL+SD D ILK DVVKIDLG H+DGFIA+V
Sbjct: 63 KIFKKEKEMEKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALV 122
Query: 124 AHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKP 183
AHT VVG A+ G+KA+ I AAH A+EAALRL+KPGN +T+ + K+ + C P
Sbjct: 123 AHTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTP 182
Query: 184 LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQD 243
+EGMLSHQLKQ IDGEK II NPSDSQKK+H+ FE NEVYA+D+LVSTG+G ++ D
Sbjct: 183 VEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDAD 242
Query: 244 TRVTIYKKTEE-NYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKL 302
R TIYK+ Y LK+KASRAFF E+++++ MPF LR FE+E +AR+G+ ECVKH+L
Sbjct: 243 QRTTIYKRDPSKTYGLKMKASRAFFSEIERRFDAMPFTLRNFEDEKRARMGLVECVKHEL 302
Query: 303 IEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLSS 362
++P+ VLYEK GE VAQFKFTVLLMPNGP RIT FE D YKS + V DPE+KALL S
Sbjct: 303 LQPYPVLYEKEGEFVAQFKFTVLLMPNGPMRITSGEFEPDLYKSEMEVQDPEIKALLASP 362
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 265 bits (679), Expect = 2e-88
Identities = 109/181 (60%), Positives = 132/181 (72%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP 79
VTKYK A +I N+VLK VI CV A D+CE D+L+ +E K +KK K ++KGIAFP
Sbjct: 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFP 60
Query: 80 TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMG 139
TCISVNNC+CHFSPL+SD LK DVVKIDLG H+DG+IAVVAHTIVVGA G
Sbjct: 61 TCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTG 120
Query: 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDG 199
KKA+ I AAHYA EAALRL++PGN IT+ +QK+ D+ C P+EG+LSHQLK+ G
Sbjct: 121 KKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSG 180
Query: 200 E 200
E
Sbjct: 181 E 181
Score = 75.4 bits (186), Expect = 9e-16
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 294 INECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITG 336
+ ECVKH L+ P+ VLYEK GE VAQFK TVLL PNG +TG
Sbjct: 186 LVECVKHGLLFPYPVLYEKEGEVVAQFKLTVLLTPNGVTVLTG 228
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 157 bits (400), Expect = 1e-45
Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 29/315 (9%)
Query: 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTC 81
KY A +I ++V + + A D+ EF + +I+++ AFP
Sbjct: 4 KYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVE-----------NRIRELGAKPAFPCN 52
Query: 82 ISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKK 141
IS+N H++P D + + DVVK+DLGAHVDG+IA A T+ +G GK
Sbjct: 53 ISINEVAAHYTPSPGD-ERVFPEGDVVKLDLGAHVDGYIADTAVTVDLG--------GKY 103
Query: 142 ANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEK 201
+ + A+ A EAA+ +++PG I +++ + + KP+ + H L++ ++
Sbjct: 104 EDLVEASEEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGP 163
Query: 202 TIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLKLK 261
+I P+ E E +VYA++ + G+G E V IY ++L
Sbjct: 164 SI---PNYD---EGGGVKLEEGDVYAIEPFATDGEGKVVEGP-EVEIYSLLRNRP-VRLP 215
Query: 262 ASRAFFGEVQKKYSNMPFNLRFFENESQA-RLGINECVKHKLIEPFQVLYEKPGETVAQF 320
A+R E++++Y+ +PF R+ E +L + +K + + VL E G V+Q
Sbjct: 216 AARKLLEEIEEEYNTLPFAERWLEGLFGEDKLELRRLLKAGALYGYPVLKEVKGGLVSQA 275
Query: 321 KFTVLLMPNGPHRIT 335
+ TV++ +G T
Sbjct: 276 EHTVIVTEDGCEVTT 290
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 153 bits (388), Expect = 6e-44
Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 30/311 (9%)
Query: 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTC 81
KY+ A EI +V K + +I EF + +I+++ G AFP
Sbjct: 3 KYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVE-----------NRIRELGAGPAFPVN 51
Query: 82 ISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKK 141
+S+N C H++P D D +LK DVVK+D GAHVDG+IA A T+ K
Sbjct: 52 LSINECAAHYTPNAGD-DTVLKEGDVVKLDFGAHVDGYIADSAFTVDFD--------PKY 102
Query: 142 ANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEK 201
+ + AA A AA++ P I + ++++ + + KP+ + H +++ ++ K
Sbjct: 103 DDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGK 162
Query: 202 TIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLKLK 261
+I P+ + E +VYA++ +TG G + +IY + L+L
Sbjct: 163 SI---PNVKGGEGT---RLEEGDVYAIEPFATTGKGYVHD-GPECSIYMLNRDK-PLRLP 214
Query: 262 ASRAFFGEVQKKYSNMPFNLRFFENESQARLG--INECVKHKLIEPFQVLYEKPGETVAQ 319
+R + + + +PF R+ + + +L + K ++ P+ VL E G VAQ
Sbjct: 215 RARKLLDVIYENFGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQ 274
Query: 320 FKFTVLLMPNG 330
F+ T+++ +G
Sbjct: 275 FEHTIIVREDG 285
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 134 bits (339), Expect = 4e-37
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 16/220 (7%)
Query: 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTC 81
K + A +I + LK V + ++ E +++ + K KG FPTC
Sbjct: 13 KMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFI---REKGAYPAFLGYKGFPFPTC 69
Query: 82 ISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKK 141
ISVN + H P +LK D+VKID+GAH+DG+I A T VVG
Sbjct: 70 ISVNEVVAHGIP---GDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSD----EDA 122
Query: 142 ANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEK 201
+ A A A + +KPG I +Q+ + + + H + + ++ E
Sbjct: 123 KRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGR-ELHEEP 181
Query: 202 TIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGRE 241
+I D + V+A++ +++TG G E
Sbjct: 182 SIPNYGKD-----GTGVRLKEGMVFAIEPMINTGSGEVVE 216
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 128 bits (323), Expect = 2e-34
Identities = 82/322 (25%), Positives = 147/322 (45%), Gaps = 30/322 (9%)
Query: 16 EDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKG 75
+ K+ A +I ++V + ++ V ++ EF + +I+++
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVEN-----------RIRELGAE 49
Query: 76 IAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
AFP IS+N C HF+P D + K DVVK+DLGAHVDG+IA A T+ +G
Sbjct: 50 PAFPCNISINECAAHFTPKAGD-KTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYD- 107
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQG 195
N + AA A A++ ++ G I +Q++ + + KP+ + H +
Sbjct: 108 -------NLVKAAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPY 160
Query: 196 QIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEEN 255
++ G K+I P+ ++ E +V A++ + G G + V+IY E
Sbjct: 161 RLHGGKSI---PNVKERDTT---KLEEGDVVAIEPFATDGVGYVTDGG-EVSIYAFLAER 213
Query: 256 YQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQA--RLGINECVKHKLIEPFQVLYEKP 313
++L ++R + + Y +PF R+ + +N ++H LI + VL E
Sbjct: 214 -PVRLDSARNLLKTIDENYGTLPFARRWLDKLGDEKYLFALNNLIRHGLIYDYPVLNEIS 272
Query: 314 GETVAQFKFTVLLMPNGPHRIT 335
G VAQ++ T+L+ +G T
Sbjct: 273 GGYVAQWEHTILVEEHGKEVTT 294
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 95.8 bits (239), Expect = 2e-23
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 20/159 (12%)
Query: 22 KYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPT- 80
+ A+ I L+ + + +++ + + +G AFP
Sbjct: 2 LMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFL---------ARGGARGPAFPPI 52
Query: 81 -CISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMG 139
N + H+ P D +LK D+V ID+GA DG+ + + T VVG
Sbjct: 53 VASGPNAAVPHYIP----SDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPE--QR 106
Query: 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKD 178
+ A+L A EAA+ +KPG + +++ ++
Sbjct: 107 ELYEAVLEAQ---EAAIAAVKPGVTGGDVDAAAREVLEE 142
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 86.7 bits (215), Expect = 1e-18
Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 35/275 (12%)
Query: 72 MKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA 131
+K G AFPT S+N+C H++P D +L +DV K+D G HV+G I A T+
Sbjct: 205 LKCGWAFPTGCSLNHCAAHYTPNTGD-KTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNP 263
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYL--ITDTVQKICKDFE--------- 180
K + A A+ ++ G D L I +Q++ + +E
Sbjct: 264 --------KYDPLLQATKDATNTGIKE--AGIDVRLSDIGAAIQEVIESYEVEIKGKTYP 313
Query: 181 CKPLEGMLSHQLKQGQIDGEKTI-IQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVG 239
K + + H + I G K++ I ++ + E E++A++ STG G
Sbjct: 314 IKSIRNLNGHSIGPYIIHGGKSVPIVKGGENTR-------MEEGELFAIETFASTGRGYV 366
Query: 240 REQDTRVTIYKKTEEN--YQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQAR--LGIN 295
E D + Y K L+L ++ + + + F R+ + Q R L +
Sbjct: 367 NE-DLECSHYMKDPGAEFVPLRLPKAKQLLKHINTNFGTLAFCRRWLDRLGQDRHLLALK 425
Query: 296 ECVKHKLIEPFQVLYEKPGETVAQFKFTVLLMPNG 330
+ V ++ P+ L + G +Q + T+LL P
Sbjct: 426 QLVDAGIVNPYPPLCDVRGSYTSQMEHTILLRPTC 460
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 70.2 bits (172), Expect = 3e-14
Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 39/235 (16%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP 79
+ + + A+EI + E + ++ +Q L A P
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGG-----------YPAGP 49
Query: 80 TCISVNN--CICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA--AKHR 135
T + + H+ P L+ D+V +DLG DG+ A + T V+G + R
Sbjct: 50 TIVGSGARTALPHYRPDDR----RLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQR 105
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEG-MLSHQLKQ 194
+ A A EAAL ++PG + +++ ++ P G H +
Sbjct: 106 E-------LYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGI-- 156
Query: 195 GQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMD--VLVSTGDGVGREQDTRVT 247
G E ++ K + E V+A++ + + G GV E VT
Sbjct: 157 GLEIHEPPVL--------KAGDDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVT 203
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 66.7 bits (164), Expect = 1e-12
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 24 KMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK-----CFKKIKDMKKGIAF 78
+ A IV VL + + + K++ DQ+ + + F
Sbjct: 5 REAGRIVAEVLDELAKAIKPGVTTKEL----DQIAHEFIEEHGAYPAPLGYYG------F 54
Query: 79 P--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRK 136
P C SVN +CH P D +LK D+V ID+G +DG+ A T +VG
Sbjct: 55 PKSICTSVNEVVCHGIPD----DRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSE-- 108
Query: 137 CMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSH 190
KK + A + +KPGN I ++K + + H
Sbjct: 109 -EAKK--LVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGH 159
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 60.4 bits (147), Expect = 2e-10
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 16/173 (9%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC-FKKIKDMKKGIAF 78
+ K + A + VL+ + + S K++ + + +K F +
Sbjct: 9 IEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSV-- 66
Query: 79 PTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCM 138
CISVN + H P +LK D+V ID+G DG+ A T +VG
Sbjct: 67 --CISVNEVVIHGIP----DKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKIS----- 115
Query: 139 GKKANAILAAHYAS-EAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSH 190
+A +L S A+ KPGN I +QK + + H
Sbjct: 116 -PEAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGH 167
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 57.2 bits (139), Expect = 2e-09
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 8 KNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVE-NASAKDICEFSDQLLFDE--TSK 64
+ I + K + IV LK + K VE + K++ +++ L +
Sbjct: 4 EGRGMEIKSPRELEKMRKIGRIVATALK-EMGKAVEPGMTTKELDRIAEKRLEEHGAIPS 62
Query: 65 CFKKIKDMKKGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAV 122
+ FP TCISVN + H P ++K D+V ID+ A++DG+
Sbjct: 63 -PEGYYG------FPGSTCISVNEEVAHGIP----GPRVIKDGDLVNIDVSAYLDGYHGD 111
Query: 123 VAHTIVVG--AAKHRKCMGKKANAILAAHYASEAALRLMKPGN 163
T VG + + K A A A ++ +K G
Sbjct: 112 TGITFAVGPVSEEAEKL-------CRVAEEALWAGIKQVKAGR 147
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 54.4 bits (132), Expect = 2e-08
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 13/116 (11%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
FP C SVN +CH P D +LK D+V ID+ DG+ + T VG
Sbjct: 64 FPKSICTSVNEVVCHGIP----SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEIS-- 117
Query: 136 KCMGKKANAIL-AAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSH 190
+ + A + +KPG I +QK + + H
Sbjct: 118 ----PEDKRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGH 169
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 46.3 bits (110), Expect = 2e-05
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 21/140 (15%)
Query: 26 ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPT--CIS 83
A+EI + L+ +E + +I + L ++ G +F T
Sbjct: 166 AAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAE----------GPSFDTIVASG 215
Query: 84 VNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKAN 143
N + H++P D L+ D+V IDLG +G+ + + T +G +
Sbjct: 216 ENAALPHYTP----SDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDE--QREIYE 269
Query: 144 AILAAHYASEAALRLMKPGN 163
A+L A EAA+ ++PG
Sbjct: 270 AVLEAQ---EAAIAAIRPGV 286
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 37.1 bits (86), Expect = 0.009
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 78 FPT--CISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--- 132
FP C S+N ICH P D+ LK D++ ID+ VDG+ + +++G
Sbjct: 104 FPKTICTSLNEVICHGIP----NDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEI 159
Query: 133 KHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSH 190
K + C A+ AA+ ++KPG Y I + ++ + ++ + H
Sbjct: 160 KKKVCQ--------ASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGH 209
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 36.7 bits (86), Expect = 0.010
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 72 MKK----GIAFPTCISVNNCICHFSPLRSDP-----DLILKREDVVKIDLGAHVDGFIAV 122
M+K G +F T I P + P D ++ D+V ID GA DG+ +
Sbjct: 39 MRKLGAEGPSFDT-------IVASGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSD 91
Query: 123 VAHTIVVGAAKHRKCMGKKA-NAILAAHYASEAALRLMKPG 162
+ T+ VG K+ +L A +AA++ +KPG
Sbjct: 92 ITRTVAVGEPSDEL---KEIYEIVLEAQ---QAAIKAVKPG 126
>gnl|CDD|226181 COG3655, COG3655, Predicted transcriptional regulator
[Transcription].
Length = 73
Score = 32.7 bits (75), Expect = 0.039
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 123 VAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECK 182
+A + V A + + + A AI SEA L +K G + T++KICK EC+
Sbjct: 3 IAVRLDVMLADRKISLKELAEAIGI----SEANLSKLKTGKVKAIRLSTLEKICKALECQ 58
Query: 183 P 183
P
Sbjct: 59 P 59
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 33.3 bits (76), Expect = 0.17
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG----A 131
FP C SVN ICH P L+ D+V +D+ + G + T VG A
Sbjct: 196 FPKSCCTSVNEVICHGIPDARK----LEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEA 251
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPG 162
++ + + E A+ ++KPG
Sbjct: 252 SRQ---------LVKCTYECLEKAIAIVKPG 273
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 33.1 bits (75), Expect = 0.18
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 75 GIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG 130
G + C SVN+ +CH P D+ L D+V ID+ +++G ++ A T VG
Sbjct: 62 GYPYAICASVNDEMCHAFP----ADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVG 113
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 30.5 bits (68), Expect = 1.4
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 106 DVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDT 165
D++K D G VDG+ A +A T VVG + K I H E L ++ PG
Sbjct: 174 DLIKFDCGVDVDGYGADIARTFVVGEPP--EITRKIYQTIRTGH---EHMLSMVAPGVKM 228
Query: 166 YLITDTVQKICK 177
+ D+ ++ K
Sbjct: 229 KDVFDSTMEVIK 240
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 30.4 bits (68), Expect = 1.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 106 DVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDT 165
D++K D G VDG+ A +A T VVG + K I H E L ++ PG
Sbjct: 257 DLIKFDCGVDVDGYGADIARTFVVGEPP--EITRKIYQTIRTGH---EHMLSMVAPGVKM 311
Query: 166 YLITDTVQKICK 177
+ D+ ++ K
Sbjct: 312 KDVFDSTMEVIK 323
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 29.3 bits (66), Expect = 3.5
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 85 NNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMGKKANA 144
N CI H++ S+ ++ D+V ID G G+ + T V K + +
Sbjct: 236 NGCILHYTENESE----MRDGDLVLIDAGCEYKGYAGDITRTFPVNG-KFTPAQREIYDI 290
Query: 145 ILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQID 198
+L + E +LRL +PG +T V +I + G++ + +G +D
Sbjct: 291 VLES---LETSLRLYRPGTSIREVTGEVVRIM-------VSGLVKLGILKGDVD 334
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 398
Score = 28.7 bits (64), Expect = 4.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 197 IDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTE 253
+DG + ++ P D Q + + Y F +++Y TG GV +Y KTE
Sbjct: 192 VDGAQGVVHGPPDVQALDIDFYAFSGHKLYG-----PTGIGV---------LYGKTE 234
>gnl|CDD|216476 pfam01395, PBP_GOBP, PBP/GOBP family. The olfactory receptors of
terrestrial animals exist in an aqueous environment, yet
detect odorants that are primarily hydrophobic. The
aqueous solubility of hydrophobic odorants is thought to
be greatly enhanced via odorant binding proteins which
exist in the extracellular fluid surrounding the odorant
receptors. This family is composed of pheromone binding
proteins (PBP), which are male-specific and associate
with pheromone-sensitive neurons and general-odorant
binding proteins (GOBP).
Length = 121
Score = 27.1 bits (60), Expect = 6.6
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 9 NEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKK 68
+++ + D ++ + ++ + K V++KC + +D CE + +L KCF +
Sbjct: 66 DDDGKLDVDKILEQLPK--DLPDEKAKEVVKKCADAIKGEDPCEKAYKLF-----KCFLE 118
Query: 69 IK 70
K
Sbjct: 119 NK 120
>gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase
(RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and
Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal
Rieske domain of the oxygenase alpha subunit; ROs
comprise a large class of aromatic ring-hydroxylating
dioxygenases that enable microorganisms to tolerate and
utilize aromatic compounds for growth. The oxygenase
alpha subunit contains an N-terminal Rieske domain with
an [2Fe-2S] cluster and a C-terminal catalytic domain
with a mononuclear Fe(II) binding site. The Rieske
[2Fe-2S] cluster accepts electrons from a reductase or
ferredoxin component and transfers them to the
mononuclear iron for catalysis. OMO catalyzes the
NADH-dependent oxidation of the N-heterocyclic aromatic
compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the
second step in the bacterial degradation of quinoline.
OMO consists of a reductase component (OMR) and an
oxygenase component (OMO) that together function to
shuttle electrons from the reduced pyridine nucleotide
to the active site of OMO, where O2 activation and
2-oxoquinoline hydroxylation occurs. CARDO, which
contains oxygenase (CARDO-O), ferredoxin (CARDO-F) and
ferredoxin reductase (CARDO-R) components, catalyzes the
dihydroxylation at the C1 and C9a positions of
carbazole. The oxygenase component of OMO and CARDO
contain only alpha subunits arranged in a trimeric
structure.
Length = 136
Score = 27.4 bits (61), Expect = 6.9
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 198 DGE-KTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDG 237
DG+ TI+ NP D T+ E M + V GDG
Sbjct: 87 DGKLVTILANPDDPLIGRTGLKTYPVEEAKGM-IFVFVGDG 126
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 7.3
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 194 QGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTE 253
Q I GE+ ++ + H+ N Y + + R+ E
Sbjct: 878 QNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEE----------KSAQERMPGADSPE 927
Query: 254 ENYQLK 259
E +
Sbjct: 928 ELMKRA 933
>gnl|CDD|214513 smart00093, SERPIN, SERine Proteinase INhibitors.
Length = 359
Score = 27.9 bits (63), Expect = 7.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 255 NYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVK 299
+ LKLK S F +++K Y ++ F + +A+ IN+ V+
Sbjct: 87 DKSLKLKDS--FLEDIKKLYGAEVQSVDFSDKAEEAKKQINDWVE 129
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 27.9 bits (63), Expect = 8.0
Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 30/129 (23%)
Query: 79 PTCIS-VNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKC 137
+ N I H+ D LK D+V ID GA G+ + + T V
Sbjct: 50 YIVAAGSNAAILHYVHN----DQPLKDGDLVLIDAGAEYGGYASDITRTFPVN------- 98
Query: 138 MGK-----KA--NAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSH 190
GK + A+LAA +AA+ KPG I ++ EG+
Sbjct: 99 -GKFTDEQRELYEAVLAAQ---KAAIAACKPGVSYEDIHLLAHRVL-------AEGLKEL 147
Query: 191 QLKQGQIDG 199
+ +G +D
Sbjct: 148 GILKGDVDE 156
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase.
Length = 415
Score = 28.0 bits (63), Expect = 9.3
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 45 ASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCISVNN 86
S K C +KC +++ A+ I+ N
Sbjct: 204 ESLKKACCGKYPDCDPANTKCLNLVEEASGCNAYNGGINPYN 245
>gnl|CDD|222133 pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a
helix-turn-helix domain that probably binds to DNA.
Length = 63
Score = 25.5 bits (57), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 152 SEAALRLMKPGNDTYLITDTVQKICKDFECKP 183
S A L +K G + +T+ KIC +C+P
Sbjct: 23 SRATLSRLKKGEAKRVSLETLDKICDALDCQP 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,943,062
Number of extensions: 1711505
Number of successful extensions: 1467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 37
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)