RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18115
(365 letters)
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 439 bits (1131), Expect = e-154
Identities = 219/361 (60%), Positives = 268/361 (74%), Gaps = 1/361 (0%)
Query: 3 DKNDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDET 62
+D+ +E+TIAEDLVVTKYKM +I NRVL+ ++E S +CE D ++ +ET
Sbjct: 8 HSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEET 67
Query: 63 SKCFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAV 122
K FKK K+MKKGIAFPT ISVNNC+CHFSPL+SD D ILK D+VKIDLG HVDGFIA
Sbjct: 68 GKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIAN 127
Query: 123 VAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECK 182
VAHT VV A+ + G+KA+ I AAH +EAALRL+KPGN +T+ K+ F C
Sbjct: 128 VAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCT 187
Query: 183 PLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQ 242
P+EGMLSHQLKQ IDGEKTIIQNP+D QKK+HEK FE +EVYA+DVLVS+G+G ++
Sbjct: 188 PIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDA 247
Query: 243 DTRVTIYKKTE-ENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHK 301
R TIYK+ + Y LK+K SRAFF EV++++ MPF LR FE+E +AR+G+ EC KH+
Sbjct: 248 GQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHE 307
Query: 302 LIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALLLS 361
L++PF VLYEK GE VAQFKFTVLLMPNGP RIT PFE D YKS + V D ELKALL S
Sbjct: 308 LLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQS 367
Query: 362 S 362
S
Sbjct: 368 S 368
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 343 bits (883), Expect = e-118
Identities = 73/319 (22%), Positives = 140/319 (43%), Gaps = 30/319 (9%)
Query: 20 VTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFP 79
K A EI +V + I+ ++ E + K I ++ AFP
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIE-----------KMIMELGGKPAFP 51
Query: 80 TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHRKCMG 139
+S+N H++P + D +LK D +KID+G H+DGFIA A T+ VG
Sbjct: 52 VNLSINEIAAHYTPYKGDTT-VLKEGDYLKIDVGVHIDGFIADTAVTVRVG--------M 102
Query: 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQLKQGQIDG 199
++ + AA A AA+ + + G + + ++ + KP+ + H++++ ++
Sbjct: 103 EEDELMEAAKEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHA 162
Query: 200 EKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKKTEENYQLK 259
+I + H+ Y + +V+A++ + G G E IY + ++
Sbjct: 163 GISIPN-----IYRPHDNYVLKEGDVFAIEPFATIGAGQVIE-VPPTLIYMYVR-DVPVR 215
Query: 260 LKASRAFFGEVQKKYSNMPFNLRFFEN---ESQARLGINECVKHKLIEPFQVLYEKPGET 316
+ +R +++++Y +PF R+ +N E Q +L + K I + VL E
Sbjct: 216 VAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGI 275
Query: 317 VAQFKFTVLLMPNGPHRIT 335
VAQF+ T+++ + T
Sbjct: 276 VAQFEHTIIVEKDSVIVTT 294
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 341 bits (876), Expect = e-116
Identities = 71/344 (20%), Positives = 132/344 (38%), Gaps = 33/344 (9%)
Query: 5 NDDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64
+ E + E ++ + A+E R V + +I + D T
Sbjct: 32 DSRNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIE----DSTRT 87
Query: 65 CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVA 124
K + GI FP +S+N+C H++ + D++LK +DV+KID G H DG I A
Sbjct: 88 LLKG--ERNNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSA 145
Query: 125 HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFEC--- 181
T+ ++AA +E ++ + I + ++ +E
Sbjct: 146 FTVAFK--------ENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIG 197
Query: 182 ------KPLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTG 235
+P+ + H + Q +I G +I + + + YA++ +TG
Sbjct: 198 GRMWPIRPISDLHGHSISQFRIHGGISIP------AVNNRDTTRIKGDSFYAVETFATTG 251
Query: 236 DGVGREQDTRVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGIN 295
G ++ T ++ +L K + V+ +PF+ R + + G
Sbjct: 252 KGSIDDRPPCSHFVLNTYKSRKLFNKDLIKVYEFVKDSLGTLPFSPRHLDYYGLVKGGSL 311
Query: 296 ECVK----HKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRIT 335
+ V L+ P+ L + G VAQF+ TV L +G +T
Sbjct: 312 KSVNLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLT 355
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 327 bits (839), Expect = e-109
Identities = 78/336 (23%), Positives = 147/336 (43%), Gaps = 20/336 (5%)
Query: 6 DDKNEEKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKC 65
++ + A + + ++ A+E +V K V+ + +ICE + + S+
Sbjct: 152 SEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLE-----DCSRK 206
Query: 66 FKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAH 125
K + G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A
Sbjct: 207 LIKENGLNAGLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCAF 265
Query: 126 TIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPG--NDTYLITDTVQKICKDFECKP 183
T+ K+ + +A + +RL G + + V+ K ++ KP
Sbjct: 266 TVTFNP-KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKP 324
Query: 184 LEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQD 243
+ + H + Q +I KT+ K E E EVYA++ STG GV + D
Sbjct: 325 IRNLNGHSIGQYRIHAGKTVPI------VKGGEATRMEEGEVYAIETFGSTGKGVVHD-D 377
Query: 244 TRVTIYKKTEE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFEN--ESQARLGINECVK 299
+ Y K + + ++L ++ + + + + F R+ + ES+ + +
Sbjct: 378 MECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLCD 437
Query: 300 HKLIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRIT 335
+++P+ L + G AQF+ T+LL P ++
Sbjct: 438 LGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVS 473
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 60.3 bits (147), Expect = 2e-10
Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 31/174 (17%)
Query: 24 KM--ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMK-----KGI 76
M A IV L V + S ++ DQ+ I++ G
Sbjct: 42 AMAAAGSIVGAALVAVRDAAKAGVSTLEL----DQV-------AESVIREAGAVPSFLGY 90
Query: 77 A-FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAK 133
FP C SVN+ + H P +L D+V ID GA +DG+ A T VG
Sbjct: 91 HGFPASICSSVNDQVVHGIP---SATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVI 147
Query: 134 HRKCMGKKANAILAAHYAS-EAALRLMKPGNDTYLITDTVQKICKDFECKPLEG 186
A+ A S EA + M PGN ++ ++ + E +
Sbjct: 148 ------PSDEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRA 195
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 54.8 bits (133), Expect = 8e-09
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 24 KM--ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMK-----KGI 76
KM A + V L+ V + V +A D+ + L + K ++ KG
Sbjct: 24 KMKKAGKAVAVALREVRKVIVPGKTAWDV----ETL-------VLEIFKKLRVKPAFKGY 72
Query: 77 A-FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAK 133
+ TC+SVN + H P + + K D+V +D+GA G A T +VG
Sbjct: 73 GGYKYATCVSVNEEVVHGLP---LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETD 129
Query: 134 HRKCMGKKANAILAAHYAS-EAALRLMKPGNDTYLITDTVQKICKDF 179
++ ++ E A++++KPG ++ +Q+ +
Sbjct: 130 ------ERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESV 170
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 50.2 bits (121), Expect = 3e-07
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 35/169 (20%)
Query: 24 KM--ASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMK-------- 73
+ I +V + + K++ D + + ++
Sbjct: 11 ALKEIGYICAKVRNTMQAATKPGITTKEL----DNI-------AKELFEEYGAISAPIHD 59
Query: 74 KGIAFP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA 131
+ FP TCISVN + H P +++ D+V ID+ A +G+ A + VVG
Sbjct: 60 EN--FPGQTCISVNEEVAHGIP----SKRVIREGDLVNIDVSALKNGYYADTGISFVVG- 112
Query: 132 AKHRKCMGKKANAILAAHYAS-EAALRLMKPGNDTYLITDTVQKICKDF 179
+ + + E A+ +KPG I V +
Sbjct: 113 ----ESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQN 157
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 49.4 bits (119), Expect = 4e-07
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
+ TC S+N+ ICH P +LK D++K+D+ + G I+ + VVG +
Sbjct: 63 YKYATCCSINDEICHGFP----RKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGEST-- 116
Query: 136 KCMGKKANAILAAHYAS-EAALRLMKPGNDTYLITDTVQKIC 176
+ + ++ + + + GN I +Q
Sbjct: 117 ----PEIDRLMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYV 154
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 91/271 (33%)
Query: 167 LITDTVQKICKDFECKPLEGMLSHQLKQGQIDGEKTIIQNPS-------------DSQKK 213
+++ +F+CK ++ M L + +ID II + Q++
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 214 EHEK---------YTF-------ETNE--------VYAMDVLVSTGDGVGREQDTRVTIY 249
+K Y F E + + D L + + +R+ Y
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 250 KKTEEN-YQLK-----------------LKASRAFFGEVQKKYSNMPFNLRFFENESQAR 291
K + +L+ + +VQ K M F + F+
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK---MDFKI-FW------- 186
Query: 292 LGINECVKHK-LIEPFQVLYEKPGETVAQFKFTVLLMPNGPHRITGIP------FESDHY 344
L + C + ++E Q L + + N RI I +S Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 345 KSTL----SVSDPEL--------KALLLSSD 363
++ L +V + + K LL +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Score = 29.1 bits (64), Expect = 3.4
Identities = 55/418 (13%), Positives = 125/418 (29%), Gaps = 105/418 (25%)
Query: 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKD 71
KT V YK+ ++ ++ L ++ C S + + E Q L + + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEML-QKLLYQIDPNWTSRSD 218
Query: 72 MKKGIAFPTCISVNNCICHFSPLRSDPD--LILKREDV--VKI----DLGAHV-----DG 118
I S+ + + + L+L +V K +L +
Sbjct: 219 HSSNIKLRI-HSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 119 FIA---VVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKI 175
+ A T + H + L Y L P +++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--P-----------REV 322
Query: 176 CKDFECKPLE-GMLSHQLKQG--------QIDGEK--TIIQNPSDSQK-KEHEKYTFETN 223
P +++ ++ G ++ +K TII++ + + E+ K F+
Sbjct: 323 LT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRL 378
Query: 224 EVYAMDVLVST-------GDGVGRE------------------QDTRVTIY-------KK 251
V+ + T D + + +++ ++I K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 252 TEENYQL--KLKASRAFFGEVQKKYSNMPFNLRFFENESQARLG--INECVKHKLIEPFQ 307
E Y L + + K + + + + + +G + + + F+
Sbjct: 439 LENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 308 VLYEKPGETVAQFKF------TVLLMPNGPHRITGIPFESDHYKSTLSVSDPELKALL 359
+++ F+F N I + YK + +DP+ + L+
Sbjct: 495 MVF-------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 45.4 bits (108), Expect = 1e-05
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
FP C SVN +CH P LK D++ ID+ G + + T VG
Sbjct: 162 FPKSCCTSVNEIVCHGIP----DYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDV 217
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFEC 181
GK+ + +++ A++ KPG I +
Sbjct: 218 PKEGKE--LVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNF 261
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 43.4 bits (103), Expect = 5e-05
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
FP C SVN ICH P L+ D+V +D+ + +G+ + T VG
Sbjct: 134 FPKSCCTSVNEVICHGIP----DRRPLQEGDIVNVDITLYRNGYHGDLNETFFVG----- 184
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFEC 181
+ + + A+ +KPG + + +QK +
Sbjct: 185 EVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGF 230
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 42.9 bits (102), Expect = 7e-05
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
+P CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 64 YPKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG----- 115
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
K + ALR++KPG + I +QK
Sbjct: 116 KPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQK 154
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 42.9 bits (102), Expect = 8e-05
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
FP C S+N+ +CH P D LK D+V ID+ +DG+ + VG
Sbjct: 67 FPKSICTSINHVVCHGIP----NDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVG----- 117
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQK 174
K I + A + +++PG I +Q
Sbjct: 118 DVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQS 156
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 42.5 bits (101), Expect = 1e-04
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 78 FP--TCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAKHR 135
FP C S+N ICH P ++ D+V ID+ A++ G T G
Sbjct: 100 FPKSCCTSLNEVICHGIP----DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAG----- 150
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFEC 181
+ + A+ A+ +KPG +I ++ F
Sbjct: 151 DVADEHRLLVDRTREATMRAINTVKPGRALSVIGRVIESYANRFGY 196
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 39.2 bits (92), Expect = 0.001
Identities = 15/148 (10%), Positives = 45/148 (30%), Gaps = 27/148 (18%)
Query: 24 KMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCIS 83
+ + I + ++ + + Z ++ +
Sbjct: 167 RZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIAR----------BFPYVE--L 214
Query: 84 VNNCICHFSPLRSD-P-----DLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--KHR 135
++ I S + +D B +++R D++ ++ + G+ + T+ +
Sbjct: 215 MDTWIWFQSGINTDGAHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASL 274
Query: 136 KCMGKKANAILAAHYASEAALRLMKPGN 163
+ A H L L+KPG
Sbjct: 275 ZIW----ZKNTAVH---RRGLZLIKPGA 295
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 25/147 (17%)
Query: 24 KMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMKKGIAFPTCIS 83
+ + I + V+E + ++ + Q + + F+ ++ M T
Sbjct: 167 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELM----DTWT--- 219
Query: 84 VNNCICHFSPLRSDP-----DLILKREDVVKIDLGAHVDGFIAVVAHTIVVG--AAKHRK 136
+ + D++ ++ + G+ + T+ + + H +
Sbjct: 220 ----WFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLR 275
Query: 137 CMGKKANAILAAHYASEAALRLMKPGN 163
+ H EA L+L+KPG
Sbjct: 276 L----WQVNVEVH---EAGLKLIKPGA 295
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 38.4 bits (89), Expect = 0.003
Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 16/150 (10%)
Query: 24 KMASEIVNRVLKLVIEKCVENASAKDIC----EFSDQL-LFDETSKCFKKIKDMKKGIAF 78
K AS + V+ + + +FSDQ+ + F+ I
Sbjct: 187 KGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDL 246
Query: 79 PTCISVNNCICHFSPLRSDP-----DLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAAK 133
I D DVV LG + + V T +
Sbjct: 247 DQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDS 306
Query: 134 HRKCMGKKANAILAAHYASEAALRLMKPGN 163
++ K + ++A + + G
Sbjct: 307 EQQ---KNYSFLVALQ---KKLFEYCRDGA 330
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 34.1 bits (79), Expect = 0.063
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 72 MKKG---IAFPTCISVNNCICHFSPLRSDP-----DLILKREDVVKIDLGAHVDGFIAVV 123
+++ IAF I ++P + +++ D++ +D GA G+ + +
Sbjct: 175 IRELSDGIAFEP-------IVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDI 227
Query: 124 AHTIVVGAA--KHRKCMGKKANAILAAHYASEAALRLMKPG 162
TI +G + K + A E+A + ++ G
Sbjct: 228 TRTIGLGELDERLVKI----YEVVKDAQ---ESAFKAVREG 261
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 33.7 bits (78), Expect = 0.083
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 99 DLILKREDVVKIDLGAHVDGFIAVVAHTIVVGAA--KHRKCMGKKANAILAAHYASEAAL 156
D ++R D+V IDLGA + + + TIVVG+ K ++ +L A + A+
Sbjct: 200 DKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIY----EIVLEAQ---KKAV 252
Query: 157 RLMKPG 162
KPG
Sbjct: 253 ESAKPG 258
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 33.3 bits (77), Expect = 0.11
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 99 DLILKREDVVKIDLGAHVDGFIAVVAHTIVVG--AAKHRKCMGKKANAILAAHYASEAAL 156
+ +++ D V +D GA+ G+ + + TI VG + K ++ N +L A +
Sbjct: 203 EKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIY----NIVLEAQ---LRGV 255
Query: 157 RLMKPG 162
+K G
Sbjct: 256 NGIKAG 261
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 33.2 bits (76), Expect = 0.13
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 29/135 (21%)
Query: 74 KGIAFPTCI---SVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG 130
+ ++ CI N+ + H+ + D ++ D+ D+G F + + +
Sbjct: 238 RHSSYT-CICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPAN 296
Query: 131 AAKHRKCMGK-----KA--NAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKP 183
GK KA A+L + A + MKPG + +I
Sbjct: 297 --------GKFTADQKAVYEAVLRSS---RAVMGAMKPGVWWPDMHRLADRIH------- 338
Query: 184 LEGMLSHQLKQGQID 198
LE + + G +D
Sbjct: 339 LEELAHMGILSGSVD 353
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 33.0 bits (76), Expect = 0.13
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 99 DLILKREDVVKIDLGAHVDGFIAVVAHTIVVG--AAKHRKCMGKKANAILAAHYASEAAL 156
D +++R DV+ ID GA + + A + + +G + + ++ + +L A E AL
Sbjct: 206 DKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVH----SIVLEAQ---ERAL 258
Query: 157 RLMKPG 162
++ K G
Sbjct: 259 KIAKAG 264
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.29
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 269 EVQ--KKYSNMPFNLRFFENESQARLGINECVK 299
E Q KK +L+ + ++S L I ++
Sbjct: 18 EKQALKKLQA---SLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 4.4
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 153 EAALRLMKPGNDTYL-ITDTVQ 173
+A+L+L + L I T++
Sbjct: 26 QASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.50
Identities = 31/146 (21%), Positives = 46/146 (31%), Gaps = 60/146 (41%)
Query: 90 HFSP-LRSDPDLILKREDVVKI-------DLGAHV----DG-----FIAVVAHTIVVGAA 132
H S L DLI +D+VK D+ V DG ++ IV
Sbjct: 428 H-SHLLVPASDLIN--KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV---- 480
Query: 133 KHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLE----GML 188
L + E + T+++ DF P G+L
Sbjct: 481 --------DCIIRLPVKW--ETTTQF----KATHIL---------DF--GPGGASGLGVL 515
Query: 189 SHQLKQGQIDGEKTII-----QNPSD 209
+H+ K G G + I+ NP D
Sbjct: 516 THRNKDGT--GVRVIVAGTLDINPDD 539
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 47/158 (29%)
Query: 95 RSDPDLILKREDVVKIDLGAHVDGFIA---VVAHTIVVGAAKHRKCMGKKANAILAAHYA 151
+P + + + V+ + L + ++ + H + + K ++ +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 152 SEAALR--LMKP-----------------------GN-DTYL-----ITDTVQKICKDFE 180
+ + K GN D Y + T + D
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL- 187
Query: 181 CKPLEGMLSHQLKQGQIDGEKTI---------IQNPSD 209
K LS +L + +D EK ++NPS+
Sbjct: 188 IKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSN 224
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 30.4 bits (68), Expect = 0.93
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 19/153 (12%)
Query: 11 EKTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIK 70
+ + E+L +T K++ +I N++ + K + K
Sbjct: 205 VRAVDEELKITNAKLSDKIENKIDDVKFLKQLS-------------PDLSALCPPNYKFN 251
Query: 71 DMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVG 130
+ I RS D L + G + + + + T ++
Sbjct: 252 FDLLDWTYSPIIQSGKKFDLRVSARSTND-QLYGNGCILASCGIRYNNYCSNITRTFLID 310
Query: 131 AAKHRKCMGKKANAILAAHYASEAALRLMKPGN 163
++ + +L E ++KPG
Sbjct: 311 PSEEMA---NNYDFLLTLQ--KEIVTNILKPGR 338
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A*
3tys_A*
Length = 88
Score = 28.2 bits (63), Expect = 1.2
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 158 LMKPGNDTYLITDTVQKICKDFECKP 183
K G + + + IC+ C
Sbjct: 54 FAKLGKNENVSLTVLLAICEYLNCDF 79
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 29.2 bits (66), Expect = 2.5
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 99 DLILKREDVVKIDLGAHVD-GFIAVVAHTIVVGAA--KHRKCMGKKANAILAAHYASEAA 155
D L+ D+V +D+G + G+ + T +G + +A+ A AA
Sbjct: 222 DRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQ----YSALQRAQ---RAA 274
Query: 156 LRLMKPG 162
+ ++PG
Sbjct: 275 VDAVRPG 281
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 28.0 bits (63), Expect = 4.8
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 24/99 (24%)
Query: 74 KGIAFPTCIS--VNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA 131
K AF T ++ N + H+ D ++ D+V +DLGA D + A +++T
Sbjct: 221 KHHAFNTILASGKNATVLHYED----NDAQIQNGDLVLLDLGAQKDYYNADISYTFPAN- 275
Query: 132 AKHRKCMGK-----KA--NAILAAHYASEAALRLMKPGN 163
G K N +L A + ++KPG
Sbjct: 276 -------GTFSSRQKQIYNIVLNAL---KETTEIIKPGL 304
>3kcg_I Antithrombin-III, ATIII; michaelis complex, blood coagulation,
calcium, disulfide bond, EGF-like domain, glycoprotein,
hemophilia, hydrolase; HET: NAG FUC MAN NTP; 1.70A {Homo
sapiens} PDB: 1e04_I* 1ath_A 1ant_L* 1br8_L 1azx_I*
1dzh_L* 1e03_L* 1dzg_L* 1e05_L* 1jvq_L* 1lk6_L* 1nq9_I*
1oyh_L* 1r1l_L* 1sr5_A* 2ant_L* 2beh_L* 2hij_L* 2znh_A*
3evj_I* ...
Length = 432
Score = 28.0 bits (63), Expect = 5.4
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 247 TIYKKTEENYQLKLKASRAFFGE-----------VQKKYSNMPFNLRFFENESQARLGIN 295
+Y+K + +L A+R F + + Y L F EN Q+R IN
Sbjct: 129 RLYRKANKASKLVS-ANRLFGDKSLTFNETYQDISELVYGAKLQPLDFKENAEQSRAAIN 187
Query: 296 ECVKHK 301
+ V +K
Sbjct: 188 KWVSNK 193
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding
protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A
3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A
3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A
3h3d_X
Length = 351
Score = 27.7 bits (62), Expect = 6.4
Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 40/190 (21%)
Query: 22 KYKMASEIVNRVLKL--------VIEKCVENASAKDICEFSDQLLFDETSKCFKKIKDMK 73
+ +M E+ VLK V++KC+E + + Q + D +
Sbjct: 125 QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL-----QFIIDAFKGQVFVLSTHP 179
Query: 74 KGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIA------VVAHTI 127
G C + + H + IL+ L H + + V+ H +
Sbjct: 180 YG-----CRVIQRILEHCTA--EQTLPILEE-------LHQHTEQLVQDQYGNYVIQHVL 225
Query: 128 VVGAAKHRKCMGK--KANAI-LAAH-YASEAALRLMKPGNDTYLITDTVQKICKDFECK- 182
G + + + + + L+ H +AS + + + + ++C +
Sbjct: 226 EHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER-ALLIDEVCCQNDGPH 284
Query: 183 -PLEGMLSHQ 191
L M+ Q
Sbjct: 285 SALYTMMKDQ 294
>1wx1_A Nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase; structural genomics; 1.97A
{Thermus thermophilus HB8} PDB: 1j33_A
Length = 335
Score = 27.5 bits (62), Expect = 7.4
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 14/48 (29%)
Query: 116 VDGFI----AVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLM 159
+DGF A++A + G H + A H + E R
Sbjct: 249 LDGFPVTAGALLAWKMAPGLRDH----------LFAGHLSREPGHRHQ 286
>1l5o_A COBT, nicotinate-nucleotide--dimethylbenzimidazole
phosphoribosyltransferase, NN:DBI PRT; cobalamin
synthetic enzyme; HET: NCN; 1.60A {Salmonella enterica}
SCOP: c.39.1.1 PDB: 1jha_A* 1jhm_A* 1jho_A* 1jhp_A*
1jhq_A* 1jhr_A* 1jhu_A 1jhv_A 1jhx_A 1jhy_A 1jh8_A
1l4e_A* 1l4f_A* 1l4g_A* 1l4h_A* 1l4k_A* 1l4l_A* 1l4m_A*
1l4n_A 1l5f_A ...
Length = 356
Score = 27.1 bits (61), Expect = 8.6
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 14/48 (29%)
Query: 116 VDGFI----AVVAHTIVVGAAKHRKCMGKKANAILAAHYASEAALRLM 159
+DGF+ A+ A I + ++ +H+++E R+
Sbjct: 262 LDGFLSYSAALAACQIAPAVRPY----------LIPSHFSAEKGARIA 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,411,137
Number of extensions: 324829
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 47
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)