RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18115
(365 letters)
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 79.4 bits (196), Expect = 2e-19
Identities = 8/71 (11%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 243 DTRVTIYKKTEE--NYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQ--ARLGINECV 298
D + Y K + + ++L ++ + + + + F R+ + + + +
Sbjct: 3 DMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKNLC 62
Query: 299 KHKLIEPFQVL 309
+++P+ L
Sbjct: 63 DLGIVDPYPPL 73
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 77
Score = 74.8 bits (184), Expect = 1e-17
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 245 RVTIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFEN---ESQARLGINECVKHK 301
IY + +++ +R +++++Y +PF R+ +N E Q +L + K
Sbjct: 8 PTLIYMYVR-DVPVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKLALKTLEKAG 66
Query: 302 LIEPFQVLYE 311
I + VL E
Sbjct: 67 AIYGYPVLKE 76
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 70.0 bits (170), Expect = 3e-14
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 18/250 (7%)
Query: 8 KNEEK---TIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSK 64
+EEK A + + ++ A+E +V K V+ + +ICE ++ S+
Sbjct: 42 TSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEK-----LEDCSR 96
Query: 65 CFKKIKDMKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVA 124
K + G+AFPT S+NNC H++P D +L+ +D+ KID G H+ G I A
Sbjct: 97 KLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGD-TTVLQYDDICKIDFGTHISGRIIDCA 155
Query: 125 HTIVVGAAKHRKCMGKKANAILAAHYASEAALRLMKPGN--DTYLITDTVQKICKDFECK 182
T+ K + +RL G + + V+ K ++ K
Sbjct: 156 FTVTFNPKYDTLLKAVKDATNTGIKC-AGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVK 214
Query: 183 PLEGMLSHQLKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQ 242
P+ + H G+ I + K E E EVYA++ STG GV +
Sbjct: 215 PIRNLNGHS------IGQYRIHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIK 268
Query: 243 DTRVTIYKKT 252
+ ++ T
Sbjct: 269 GSYTAQFEHT 278
Score = 29.1 bits (64), Expect = 0.89
Identities = 22/232 (9%), Positives = 56/232 (24%), Gaps = 38/232 (16%)
Query: 140 KKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDF--ECKPLEGMLSHQLKQGQI 197
++A + + +KPG I + ++ + E G+
Sbjct: 61 REAAEAHRQ--VRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNN 118
Query: 198 DGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDG-----------VGREQDTRV 246
+ + + + + ++ ++
Sbjct: 119 CAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTG 178
Query: 247 TIYKKTEENYQLKLKASRAFFGEVQKKYSNMPFNLRFFENESQARLGINECVKHKL---- 302
+ +A + + + + ++ N + +G K
Sbjct: 179 IKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIV 238
Query: 303 ---------------IEPFQVL----YEKPGETVAQFKFTVLLMPNGPHRIT 335
IE F + G AQF+ T+LL P ++
Sbjct: 239 KGGEATRMEEGEVYAIETFGSTGKGVVDIKGSYTAQFEHTILLRPTCKEVVS 290
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 64.5 bits (156), Expect = 2e-12
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 19/240 (7%)
Query: 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKD 71
KT + + K ++A + VL+++ S ++ + + +E +
Sbjct: 4 KTPED---IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNE--QHAVSACL 58
Query: 72 MKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA 131
G CIS+N +CH P D +LK D+V ID+ DGF + +VG
Sbjct: 59 GYHGYPKSVCISINEVVCHGIP---DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGK 115
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQ 191
+ + ALR++KPG + I +QK + + H
Sbjct: 116 PTIMGERLCRIT-----QESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHG 170
Query: 192 LKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKK 251
+ +G + + + + + + ++ +V+ G R T+ K
Sbjct: 171 IGRGFHEEPQVLHYD------SRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTK 224
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 51.9 bits (123), Expect = 2e-08
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 20/240 (8%)
Query: 12 KTIAEDLVVTKYKMASEIVNRVLKLVIEKCVENASAKDICEFSDQLLFDETSKCFKKIKD 71
KT +E + K K A + V L+ V + V +A D+ ++ K
Sbjct: 5 KTPSE---IEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIF---KKLRVKPAFK 58
Query: 72 MKKGIAFPTCISVNNCICHFSPLRSDPDLILKREDVVKIDLGAHVDGFIAVVAHTIVVGA 131
G + TC+SVN + H + + K D+V +D+GA G A T +VG
Sbjct: 59 GYGGYKYATCVSVNEEVVHG---LPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGE 115
Query: 132 AKHRKCMGKKANAILAAHYASEAALRLMKPGNDTYLITDTVQKICKDFECKPLEGMLSHQ 191
R + E A++++KPG ++ +Q+ + + + H
Sbjct: 116 TDERGKELVRVT-----REVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHG 170
Query: 192 LKQGQIDGEKTIIQNPSDSQKKEHEKYTFETNEVYAMDVLVSTGDGVGREQDTRVTIYKK 251
+ G+ E I N A++ +VS GD ++ T
Sbjct: 171 V--GRELHEDPQIPN----YGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTV 224
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.6 bits (61), Expect = 1.8
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 16/109 (14%)
Query: 186 GMLSHQLKQGQIDGEKTIIQNPSDSQKKEHE----KYTFETNEVYAMDVL-VSTGDGVGR 240
G+ +L+ I I+ NPS + E +E + + + V TG GR
Sbjct: 1 GLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGR 60
Query: 241 -EQDTRVTIYKKTEENYQLKLKASRAFFGEVQK-KYSNMPFNLRFFENE 287
+D + T + + ++ + K K N P + +++
Sbjct: 61 SPKDKYIVRDDTTRDTF---------WWADKGKGKNDNKPLSPETWQHL 100
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 27.4 bits (59), Expect = 2.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 303 IEP-FQVLYEKPGETVAQFKFTVLLMPNGPHRITGIPFESDH 343
+EP + PG + +++ NG IT P+ +
Sbjct: 201 MEPMIMLPEGLPGAGGYREHDILIVNENGAENITKFPYGPEK 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,310,610
Number of extensions: 61107
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)