BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18119
(263 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/245 (63%), Positives = 199/245 (81%), Gaps = 4/245 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+LL++ G LR DGRR +ELR I+C+LGVFSQ DGSAY+EQGNTKVLAAVYGP +K
Sbjct: 1 MELLSDQG--LRLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSK 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
H ++N QYSMA FSTGERK RPRGDRK+ E+++ L+QA+SAAI E++PRSQID
Sbjct: 59 KSN-HEEAIVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLG 179
+++EVLQADGGN+CA VNAATLALIDAGI ++EYV AC+ASLA G+ PL+D+SHLEE G
Sbjct: 118 VYIEVLQADGGNYCASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEENSG 177
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
GP LTVA+LP SGK+A ME+SQ+ HLDHLP+VL+ ALKGC ++ ++D A+++H+ ++
Sbjct: 178 GPTLTVASLPSSGKIAFMEMSQRFHLDHLPKVLETALKGCREVQNVIDRAVREHVTQLGQ 237
Query: 240 ARGLG 244
A G G
Sbjct: 238 AGGWG 242
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 7/246 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVR 58
M+LL++ G LR DGRR +ELR+I+C+LGVFSQ DGSAYIEQGNTKVLAAVYGP P +
Sbjct: 1 MELLSDEG--LRLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAK 58
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
S H V++N QYSMA FSTGERK RPRGDRK+ E+++ L+QA+SAAI +E++P+SQ
Sbjct: 59 KSS---HEEVIVNCQYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQ 115
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
ID+++EVL ADGGN+CA VNAATLALIDAGI ++EYV AC+ASLAG PL+D+S+LEE
Sbjct: 116 IDVYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKIPLMDVSNLEEMS 175
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP LTVA+LP SGK+A ME+SQ+ HLDHLP+VL+ AL+GC ++ I+D A+++H+ ++
Sbjct: 176 GGPTLTVASLPSSGKIAFMEMSQRFHLDHLPKVLETALQGCREVQKIIDQAVREHVTQLG 235
Query: 239 GARGLG 244
A G
Sbjct: 236 QAGDWG 241
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/237 (64%), Positives = 193/237 (81%), Gaps = 2/237 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
GLR DGRR ELR+IRC+LGVF++ DGSAY+EQG TKVLAAVYGP VR ++S H S
Sbjct: 12 GLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N Q+SMAVFSTGERK RPRGDRK++EIS+ LRQA++AAI E++P +QID++VEVL A
Sbjct: 72 VVNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGGPNLTVAA 187
DGG + ACVNAATLALIDAGIP++EYV AC+ASLA D PL+D+SH EE +GGP LTVAA
Sbjct: 132 DGGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAA 191
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
LP+SGK+ +ME+SQ+ H+DHL +VLD AL+GC DI +ILD A+K H+ V + G
Sbjct: 192 LPMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVKSHIQDVGSSTGWA 248
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/236 (64%), Positives = 190/236 (80%), Gaps = 2/236 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+IRC+LGVF++ DGSAY+EQG TKVLAAVYGP V + H S +
Sbjct: 12 GLRQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQ-HDSAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N Q+SMAVFSTGERK RPRGDRK++EIS+ LRQA++AAI E++P +QID++VEVL AD
Sbjct: 71 VNCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHAD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGGPNLTVAAL 188
GG + ACVNAATLALIDAGIP++EYV AC+ASLA D PL+D+SH EE +GGP LTVAAL
Sbjct: 131 GGIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEEIIGGPTLTVAAL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
P+SGK+ +ME+SQ+ H+DHL +VLD AL+GC DI +ILD A+K H+ V + G
Sbjct: 191 PMSGKIVLMEMSQRFHVDHLQKVLDKALQGCKDIKSILDEAVKSHIQDVGSSTGWA 246
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 150/244 (61%), Positives = 195/244 (79%), Gaps = 3/244 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+LL++ G LR DGRR +ELR+I+C+LGVFSQ DGSAY+EQGNTKVLAAVYGP K
Sbjct: 1 MELLSDEG--LRLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAK 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
H ++N QYSMA FSTGERK RPRGDRK+ E+++ L+QA+SAAI ++++P+SQID
Sbjct: 59 KSN-HEECVVNCQYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
+++EVL ADGGN+CA VNAATLALIDAGI ++EYV AC+ASLAG PL+D+S+LEE GG
Sbjct: 118 VYIEVLMADGGNYCASVNAATLALIDAGICLKEYVCACTASLAGKVPLMDVSNLEEMSGG 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVA+LP SGK+A ME+SQ+ HLDHLP VL+ AL+GC ++ I+D A++ H+ ++ A
Sbjct: 178 PTLTVASLPNSGKIAFMEMSQRFHLDHLPNVLETALQGCREVQKIIDQAVRDHVTQLGQA 237
Query: 241 RGLG 244
G
Sbjct: 238 GDWG 241
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/241 (59%), Positives = 195/241 (80%), Gaps = 3/241 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
+DLL++ G R DGRR HELRKI+C+LGVFSQ+DGSAY+EQGNTKVLAAVYGP +R +
Sbjct: 4 LDLLSDQG--FRIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + VL+N QYSMA FST ERK RPRGDRK+ E+++ L+Q +AAI++ +HPRSQI
Sbjct: 62 RSKLLQDKVLVNCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DIFVEVLQ+DGGN+CA VNAATLA+IDAGIPM++YV ACSAS GD+P+VDI++LEE+ G
Sbjct: 122 DIFVEVLQSDGGNYCASVNAATLAVIDAGIPMKDYVCACSASYLGDSPIVDINYLEESSG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P +TVA LP S ++ +E++ +LH D+L +V+D A+KGC D++ +LD +++H+ +V
Sbjct: 182 SPEITVAVLPKSEQIVFLEMNGRLHEDNLSKVVDMAVKGCKDVYGVLDRTVREHVSQVGS 241
Query: 240 A 240
+
Sbjct: 242 S 242
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 140/231 (60%), Positives = 188/231 (81%), Gaps = 1/231 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSV 68
G R DGRR HELRKIRCR+GVF Q+DGSAYIEQGNTKVLA VYGP + +S +H V
Sbjct: 11 GFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKV 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYSMA FSTGERKTRP+GDR++ E+S+ LR+ AAI++ ++PRSQIDI+V+VLQ+
Sbjct: 71 LLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+CACVNAATLA+IDAGIPMR+YV AC++SL DTP+VDIS+LEE++G P + VA L
Sbjct: 131 DGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSPEMVVALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P S ++ + + + +LH+D+L +VLD +KGC D++ ILD ++++H+ +V+
Sbjct: 191 PKSEQIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTEVSN 241
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 143/228 (62%), Positives = 187/228 (82%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
LR DGRR ELR+IRC+LGVFSQ DGSAYIE GNTKVLAAVYGP VR ++ + + +
Sbjct: 9 NLRLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAV 68
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN QYS AVFST ERK RPRGD+K+ E S+ L QA+SAAI +E++P+SQIDIFVEVLQ+D
Sbjct: 69 INCQYSSAVFSTEERKKRPRGDKKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQSD 128
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-PLVDISHLEETLGGPNLTVAAL 188
GG+F A VN +TLALIDAGIP++EYV +C+ASLA + PLVD+++LEE+ GGP LT+A L
Sbjct: 129 GGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLEESCGGPTLTIATL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
PL+ K+A+ME+SQ+ HLDHL +VL+ A++GC +I IL+ A+K+H+++
Sbjct: 189 PLAKKIALMEMSQRFHLDHLEKVLNTAMEGCKNIQVILNEAVKRHILQ 236
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/246 (59%), Positives = 197/246 (80%), Gaps = 5/246 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
MDLL+ G LR DGRR ELR+IRC++GVF+Q DGSAY+EQGNTKV+AA+YGP +R N
Sbjct: 1 MDLLSRQG--LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTN 58
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + S +IN QYSMA FS ERK RPR D K++E++L L+QA++ AI ++++P+SQI
Sbjct: 59 RAKAPNDSAVINCQYSMATFSRSERKRRPR-DNKSAELTLHLKQAMATAIKTDLYPKSQI 117
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
DIFV+VLQ+DGGN+ CVNAATLALIDAGI M E+V++C++SLA G+TPLVDISHLEET+
Sbjct: 118 DIFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETM 177
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP+LTVA LP+SGK+A++E SQ++H++HL VL A++GC I+ L+ IK+H ++
Sbjct: 178 GGPSLTVAILPISGKIAMLETSQRIHINHLEPVLTEAVRGCRYIYENLNKIIKKHYEEIG 237
Query: 239 GARGLG 244
GA G
Sbjct: 238 GALNWG 243
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 139/229 (60%), Positives = 181/229 (79%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
GLR DGR+ +ELR+IRC LG+FSQ+DGSAY+EQGNTKVLAAVYGP +R +KS +H
Sbjct: 11 GLRIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N QYS A FS GERK RPRGDRK++E+S L + +AAI +E++PRSQIDIFVEVLQA
Sbjct: 71 FVNCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEVLQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+ ACVNAA +AL+DAG+P+++ VV+C+ASL D PLVD++H+E + G P L V+ L
Sbjct: 131 DGGNYTACVNAAMMALVDAGVPLKDTVVSCTASLVKDVPLVDVNHVERSGGSPELVVSIL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
P SG++ M L+Q+ H+DHL +VLD A+KGC DI AIL+ +K HL K+
Sbjct: 191 PHSGEIVYMSLTQRFHIDHLSKVLDTAIKGCKDIGAILNEIMKGHLTKL 239
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 136/226 (60%), Positives = 179/226 (79%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGR+ ELRKIR R+GVF+Q+DGSAYIEQGNTK LA VYGP +R ++S +H
Sbjct: 11 GYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRS 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N QYSMA FSTGERK RP GDRK+SE++L L+Q AAI+++++PRSQIDI+V++LQA
Sbjct: 71 VVNCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+C CVNAATLA+IDAGIPMR+YV A SA DTPL D+S++EE GGP L +A L
Sbjct: 131 DGGNYCTCVNAATLAVIDAGIPMRDYVCASSAGFIEDTPLADLSYVEEAAGGPQLALALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P S ++A++E++ +LH DHL RV+D A K C D++A+LD +++HL
Sbjct: 191 PKSDQIALLEMNSRLHEDHLERVMDAASKACKDVYAVLDQVVREHL 236
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 185/238 (77%), Gaps = 3/238 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
M+LL++ G R DGR+ ELRKIR R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 MELLSD--QGYRVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S +H +IN QYSMA FSTGERK RP GDRK+SE++L L+Q AAI+++++PRSQI
Sbjct: 62 RSKMLHDRCVINCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V++LQADGGN+C CVNAATLA+IDAGIPMR+YV ACSA DTPL D+S++EE G
Sbjct: 122 DIYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFIEDTPLADLSYVEEATG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
GP L +A LP S ++A++E++ +LH DHL RV++ K C D++ +LD +++H +V
Sbjct: 182 GPQLALALLPKSDQIALLEMNSRLHEDHLERVMEAVSKACKDVYTVLDQVVREHAQEV 239
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/247 (59%), Positives = 188/247 (76%), Gaps = 6/247 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+LL+E G LR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 5 MELLSEQG--LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGK 62
Query: 61 SIKVHGS-VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
K G+ ++IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQI
Sbjct: 63 --KTEGNDLVINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQI 120
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
DI+VEVLQADG N+ +NAATLALIDAGI + E+VVAC+ASL+ + PL DISH+EE
Sbjct: 121 DIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSNANIPLTDISHIEEVS 180
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP LT+AALP + K+A ME+S++ H+D L V++ A+ GC +I IL++A+K+HLI +
Sbjct: 181 GGPKLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKEHLIHIG 240
Query: 239 GARGLGR 245
A R
Sbjct: 241 SAADWAR 247
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/247 (59%), Positives = 187/247 (75%), Gaps = 6/247 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+LL+E G LR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 5 MELLSEQG--LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAK 62
Query: 61 SIKVHGS-VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
K G+ ++IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQI
Sbjct: 63 --KSEGNDLIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQI 120
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
DI+VEVLQADG N+ +NAATLALIDAGI + E+VVAC+ASL+ + PL DISH+EE
Sbjct: 121 DIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVS 180
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP LT+AALP + K+A ME+S++ H+D L V++ A+ GC +I IL+ A+K+HLI +
Sbjct: 181 GGPKLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILEAAVKEHLIHIG 240
Query: 239 GARGLGR 245
A R
Sbjct: 241 SAADWAR 247
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 147/247 (59%), Positives = 188/247 (76%), Gaps = 6/247 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL+E G LR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 5 IELLSEQG--LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGK 62
Query: 61 SIKVHGS-VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
K G+ ++IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQI
Sbjct: 63 --KTEGNDLIINCQYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQI 120
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
DI+VEVLQADG N+ +NAATLALIDAGI + E+VVAC+ASL+ + PL DISH+EE
Sbjct: 121 DIYVEVLQADGANYAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEEVS 180
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP LT+AALP + K+A ME+S++ H+D L V++ A+ GC +I IL++A+K+HLI +
Sbjct: 181 GGPKLTIAALPTAEKIAFMEMSERFHIDQLETVIETAMAGCREIRDILESAVKEHLIHIG 240
Query: 239 GARGLGR 245
A R
Sbjct: 241 SAADWAR 247
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/245 (58%), Positives = 185/245 (75%), Gaps = 7/245 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
+LL+E GLR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP ++K
Sbjct: 6 ELLSE--QGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSK- 62
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
H +IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQIDI
Sbjct: 63 ---HTESIINCQYSQATFSTAERKYRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQADG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DISH EE GG
Sbjct: 120 YVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
Query: 241 RGLGR 245
+
Sbjct: 240 SDFAK 244
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 183/237 (77%), Gaps = 6/237 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+ G LR DGRR +ELR+IRC+LGVF+Q DGSAY+EQGNTKVLAAVYGP VR
Sbjct: 5 DLLSSQG--LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFR 62
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
V++N QYSMA FSTGERK RPRGDRK+ E+S+ LRQA++AAI +E++PRSQIDI
Sbjct: 63 KSSAEGVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDI 122
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG----DTPLVDISHLEET 177
+VEVLQADGG +CA VNA+TLALIDAGIP++ YV +CSAS+A PL+D+ H+EE
Sbjct: 123 YVEVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEA 182
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GG LTVA+LP +G +A++ELS +LH D+ VL A++GC DI ILD A++ HL
Sbjct: 183 AGGVTLTVASLPSTGSIALLELSHRLHSDYFDTVLSRAMQGCRDIEVILDKAVRDHL 239
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 144/247 (58%), Positives = 185/247 (74%), Gaps = 4/247 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+LL+E GLR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 5 FELLSE--QGLRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGK 62
Query: 61 SIKVHGS-VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ + V+IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQI
Sbjct: 63 NKSSESNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQI 122
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
D++VEVLQADG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DIS +EE
Sbjct: 123 DVYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVEEIS 182
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP LTVAALP S K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ +
Sbjct: 183 GGPKLTVAALPTSEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHIG 242
Query: 239 GARGLGR 245
A R
Sbjct: 243 SAADWAR 249
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 295 bits (756), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 144/246 (58%), Positives = 184/246 (74%), Gaps = 4/246 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+LL+E GLR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 5 FELLSE--QGLRLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGK 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ V+IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQID
Sbjct: 63 KTE-SNDVIINCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQID 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLG 179
++VEVLQADG N+ +NAATLALIDAGI + E +VAC+ASL+ + PL DISH+EE G
Sbjct: 122 VYVEVLQADGANYAVALNAATLALIDAGICLNELIVACTASLSKNNIPLTDISHIEEVSG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
GP LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ +K+HL+ +
Sbjct: 182 GPKLTVAALPTAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAVVKEHLLHMGS 241
Query: 240 ARGLGR 245
A GR
Sbjct: 242 AADWGR 247
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/245 (58%), Positives = 184/245 (75%), Gaps = 7/245 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
+LL+E GLR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP + K
Sbjct: 6 ELLSE--QGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQ 63
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ +IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQIDI
Sbjct: 64 TES----IINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQADG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DISH EE GG
Sbjct: 120 YVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
Query: 241 RGLGR 245
+
Sbjct: 240 SDFAK 244
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 4/228 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELR+IRC+LGVF Q DGSAY+EQGNTKVLAAVYGP + G V+
Sbjct: 7 GLRLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEG-VV 65
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N QYSMA FSTGERK RP GDRK++E+SL LRQA++AAI +E++PRSQID++VEVLQAD
Sbjct: 66 VNCQYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQAD 125
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGD---TPLVDISHLEETLGGPNLTVA 186
G +C CVNAATLALIDAGIP+R Y ACSAS++ PL+D+ H+EE GG LTVA
Sbjct: 126 GSCYCVCVNAATLALIDAGIPLRAYACACSASMSWRDDAEPLLDVGHVEEAAGGVCLTVA 185
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+LP +G++A++E+S +LH+D+ VL A++GC DI +LD A+++HL
Sbjct: 186 SLPSTGRIALLEMSHRLHMDYFDIVLSRAMQGCRDIEVVLDKAVREHL 233
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 137/235 (58%), Positives = 180/235 (76%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSV 68
G R DGR+ E RKI CRLGVF+Q+DGSAYIEQGN KVLAAVYGP P ++S H V
Sbjct: 11 GYRLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRV 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N Q+SMA FST ERK RPRGD+K+ E++L ++QA A+I+++++PRSQIDIFVEVLQ+
Sbjct: 71 LVNCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVEVLQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG C+NAATLALIDAGI +++YV ACS PLVDISHLEE+L GP LTVA L
Sbjct: 131 DGGTLSVCINAATLALIDAGIALKDYVCACSVGFVDGVPLVDISHLEESLRGPELTVAVL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P S ++ ++E++ ++H+D+L ++LD A+KGC D+HAILD+ +K+H +V G
Sbjct: 191 PKSQQMVLLEMTSRVHVDNLQKMLDAAVKGCIDVHAILDSQVKEHTAQVGSCIGW 245
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/246 (57%), Positives = 183/246 (74%), Gaps = 4/246 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+LL+E G LR DGRR HELR I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP +
Sbjct: 5 FELLSEQG--LRLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGM 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ + V+IN QYS A F+T ERK RPRGDRK+ E + L QA+SAAI SE++PRSQID
Sbjct: 63 KTETN-DVIINCQYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQID 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-PLVDISHLEETLG 179
I+VEVLQADG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DISH EE G
Sbjct: 122 IYVEVLQADGANYAVALNAATLALIDAGICLNEFIVACTASLSKSSIPLTDISHTEEVSG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
GP LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+++HL+ +
Sbjct: 182 GPMLTVAALPNAQKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVREHLLHIGS 241
Query: 240 ARGLGR 245
A R
Sbjct: 242 AADWAR 247
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 184/245 (75%), Gaps = 3/245 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRN 59
++LL++ G R DGR+ E RKI CRLGVFSQ+DGSAYIEQGN KVLAAVYGP P N
Sbjct: 4 LELLSDEG--YRLDGRKPTEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGN 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S +H VL+N Q+SMA FST ERK RPRGD+K+ E++L ++Q A I+++++PRSQI
Sbjct: 62 RSRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DIFVEVLQ+DGG CVNAATLALIDAGI +++YV ACS PLVDIS +EE+
Sbjct: 122 DIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNR 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
GP LTVA LP S ++ ++E+S ++H+D+L ++LD A+KGC D+HAI D+ +K+H +V
Sbjct: 182 GPELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDVHAIFDSRVKEHTAQVGS 241
Query: 240 ARGLG 244
+ G G
Sbjct: 242 SIGWG 246
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 289 bits (740), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 130/226 (57%), Positives = 177/226 (78%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV-HGSV 68
G R DGRR ELRK+ R+GVF+Q+DGSAYIEQGNTK LA VYGP VR K+ H
Sbjct: 11 GYRIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N Q+SMA FSTGERK+RP+GDR++ E+S+ LRQ A I++E+ PRSQIDI+V++LQA
Sbjct: 71 VVNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+CACVNAATLA+IDAGIPM++YV AC+A D+PL+DIS++EE+ G P LTVA +
Sbjct: 131 DGGNYCACVNAATLAVIDAGIPMKDYVCACTAGFIQDSPLLDISYVEESAGAPFLTVAMM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P S ++ ++E++ +LH D++ +VLD A +GC D+ A+LD ++ H+
Sbjct: 191 PKSEQIVLLEMNSRLHADNMEKVLDLATQGCKDVFAVLDRHVRDHV 236
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 142/245 (57%), Positives = 181/245 (73%), Gaps = 7/245 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+E GLR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP +
Sbjct: 6 DLLSE--QGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQ 63
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ +IN QYS A FST ERK RPRGDRK+ E L L+QA+SAAI SE++PRSQIDI
Sbjct: 64 TES----VINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQ DG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DIS EE GG
Sbjct: 120 YVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
Query: 241 RGLGR 245
+
Sbjct: 240 SDFAK 244
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 141/245 (57%), Positives = 181/245 (73%), Gaps = 7/245 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+E GLR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP +
Sbjct: 6 DLLSE--QGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQ 63
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ +IN QYS A FST ERK RPRGDRK+ E + L+QA+SAAI SE++PRSQIDI
Sbjct: 64 TES----VINCQYSQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQ DG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DIS EE GG
Sbjct: 120 YVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
Query: 241 RGLGR 245
+
Sbjct: 240 SDFAK 244
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/245 (57%), Positives = 181/245 (73%), Gaps = 7/245 (2%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+E G LR DGRR HELR+I+C+LGVF Q DGSAY+EQGNTKVLAAVYGP +
Sbjct: 6 DLLSEQG--LRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQ 63
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ +IN QYS A FST ERK RPRGDRK+ E L L+QA+SAAI SE++PRSQIDI
Sbjct: 64 TES----VINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDI 119
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLGG 180
+VEVLQ DG N+ +NAATLALIDAGI + E++VAC+ASL+ + PL DIS EE GG
Sbjct: 120 YVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGG 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P LTVAALP + K+A +E+S++ H+DHL V++ A+ GC +I IL+ A+K+HL+ + A
Sbjct: 180 PKLTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILEAAVKEHLLHMGSA 239
Query: 241 RGLGR 245
+
Sbjct: 240 SDFAK 244
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 178/235 (75%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSV 68
G R DGR+ +E RKI CRLGVFSQ+DGSAYIEQGN KVLAAVYGP P N+S +H V
Sbjct: 11 GYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRV 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N Q+SMA FST ERK RPRGD+K+ E++L ++Q A I+++++PRSQIDIFVEVLQ+
Sbjct: 71 LVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG CVNAATLALIDAGI +++YV ACS PLVDIS +EE+ GP LTVA L
Sbjct: 131 DGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P S ++ ++E+S ++H+D+L ++LD A+KGC D+HAI D+ +K+H +V + G
Sbjct: 191 PKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDLHAIFDSRVKEHTAQVGSSIGW 245
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 182/239 (76%), Gaps = 3/239 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYSMA FSTGERK RP GDRK E+ LQLRQ AAI+++++PRSQI
Sbjct: 62 RSRALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGGN+ ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+HA+LD ++QH+ + A
Sbjct: 182 GPQLALALLPASGQLALLEMDARLHEDHLQQVLEAASQAARDVHALLDRVVRQHVREAA 240
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 182/239 (76%), Gaps = 3/239 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYSMA FSTGERK RP GDRK E+ LQLRQ AAI+++++PRSQI
Sbjct: 62 RSRALPDRALVNCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGGN+ ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGNYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+HA+LD ++QH+ + A
Sbjct: 182 GPQLALALLPASGQLALLEMDARLHEDHLQQVLEVASQAARDVHALLDRVVRQHVREAA 240
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 286 bits (731), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAARAARDVHTLLDRVVRQHV 236
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/234 (56%), Positives = 176/234 (75%), Gaps = 2/234 (0%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP ++
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSR 61
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQID
Sbjct: 62 ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GG
Sbjct: 122 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGG 181
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 PQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 235
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 236
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 8 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 65
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 66 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 125
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 126 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 185
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 186 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 240
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/230 (56%), Positives = 175/230 (76%), Gaps = 1/230 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGR+ ELRK++ R+ VF+Q+DGSAY+EQGNTK LA VYGP +R ++S +H
Sbjct: 11 GYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+IN QYSMA FST ERK RP GDRK+SE+SL L+Q AA+++E++PRSQIDI+V++LQA
Sbjct: 71 IINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+ ACVNAATLAL+DAGIPMR+YV ACSA DTPL D+ H EE+ GG L +A L
Sbjct: 131 DGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGTALALALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P SG +A++++ +LH DHL +++ A+ C + +LD+ ++QHL +V+
Sbjct: 191 PRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQHLEEVS 240
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHV 236
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 236
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 176/235 (74%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSV 68
G R DGR+ E RKI CRLGVF Q+DGSAYIEQGN KVLAAVYGP P ++S H V
Sbjct: 49 GYRLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRV 108
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N Q+SMA FST ERK RPRGD+K+ E++L ++QA A+I+++++PRSQIDIFVE LQ+
Sbjct: 109 IVNCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVETLQS 168
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG C+NAATLALIDAGI +++YV ACS PLVDIS+LEE++ GP LTVA L
Sbjct: 169 DGGTLSVCINAATLALIDAGIALKDYVCACSVGFVEGVPLVDISNLEESMRGPELTVAVL 228
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P S ++ ++E++ ++HLDHL ++LD +KGC D+HAI D+ +K+H +V G
Sbjct: 229 PKSQEMVLLEMTSRVHLDHLQKMLDAGVKGCTDVHAIFDSRVKEHTAQVGSCIGW 283
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQA AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVN ATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHV 236
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 236
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALSDLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHV 236
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/239 (56%), Positives = 180/239 (75%), Gaps = 3/239 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+ + +
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQHVCEAS 240
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQLALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHV 236
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ L LRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA +T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHV 236
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 171/221 (77%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELRK+ C++GV SQ+DGSAYIE GNTK LA VYGP V+NK+ +H VL
Sbjct: 11 GLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVL 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N Q+ MA FSTGERK +PRGDRK +E+S+ +R+ AAI+ ++PRSQIDI+V+VLQAD
Sbjct: 71 LNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQAD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GGN AC+NA TLALI+AGIP+++YV AC+ S DTPL+DI++LEE+ GGP LT+A LP
Sbjct: 131 GGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLTLAILP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
S K+ + ++ +LH+D++ +VL A+KGC DI+ +L I
Sbjct: 191 KSDKIVLFQMDSRLHMDNMDKVLALAMKGCKDIYVLLHRTI 231
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAAQDVHILLDRVVRQHV 236
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTLLDRVVRQHV 236
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRPLVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 236
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 177/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 30 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 87
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 88 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 147
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 148 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 207
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+
Sbjct: 208 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHV 262
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 177/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEPVLEAAARAARDVHTLLDRVVRQHV 236
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/238 (55%), Positives = 177/238 (74%), Gaps = 6/238 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP + +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGR 61
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQID
Sbjct: 62 RDRA----LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GG
Sbjct: 118 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDSTALADLSHVEEAAGG 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+ + +
Sbjct: 178 PQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTLLDHVVRQHVCEAS 235
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 177/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ L LRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 236
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 177/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHV 236
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/237 (56%), Positives = 174/237 (73%), Gaps = 5/237 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIR 61
Query: 61 SIKVHG---SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
+ L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRS
Sbjct: 62 GSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS 121
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET 177
QIDI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE
Sbjct: 122 QIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEA 181
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GGP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 AGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 238
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 176/235 (74%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK R GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRAHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEWVLEAAAQAARDVHTLLDRVVRQHV 236
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/237 (56%), Positives = 174/237 (73%), Gaps = 5/237 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIR 61
Query: 61 SIKVHG---SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
+ L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRS
Sbjct: 62 GSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS 121
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET 177
QIDI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE
Sbjct: 122 QIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEA 181
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GGP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 AGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 238
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 131/226 (57%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGRR ELRKI+ R+GVF+Q+DGS YIEQGNTK LA VYGP +R +++ +
Sbjct: 109 GYRVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRA 168
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYS A FSTGERK R GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQA
Sbjct: 169 LVNCQYSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 228
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GGP L +A L
Sbjct: 229 DGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALL 288
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 289 PASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 334
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 127/234 (54%), Positives = 175/234 (74%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGR+ ELRK++ R+GVF+Q+DGSAYIEQGNTK LA VYGP VR ++S +H
Sbjct: 11 GYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+IN QYSMA FST ERK RP GDRK++E+SL L+Q AA+++ ++PRSQIDI+V++LQ+
Sbjct: 71 VINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+ ACVNAATLA+IDAGIPMR+YV AC+A +TPL D+ H EE+ GG +L +A L
Sbjct: 131 DGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
P G +A++++ +LH DHL +++ A+ C + +LD ++QHL +V+ G
Sbjct: 191 PRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQVVRQHLQEVSALTG 244
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/242 (57%), Positives = 181/242 (74%), Gaps = 6/242 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRN 59
M+LL++ G LR DGR+ ELR++RCRLG FS S DGSAY+E GNTKVLAAVYGPR R
Sbjct: 1 MELLSDQG--LRLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRG 58
Query: 60 KSIKVHGS---VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPR 116
S + + ++N Q+S A FST ERK R RGD+++ E++ L+Q +A I +E++PR
Sbjct: 59 GSSGDNSNKEEAILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPR 118
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE 176
SQIDIFVEVLQ DGG++CA VNAATLALI AGIP+R+YV ACSASL +TPL+DIS LE
Sbjct: 119 SQIDIFVEVLQTDGGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETPLLDISMLES 178
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
LGGP L +AALP SG++ ++E+SQ+ H+DHL +V+D AL+G I ILD ++ HL K
Sbjct: 179 NLGGPELILAALPKSGEIVLLEMSQRFHMDHLEKVIDEALEGTRKIRDILDEVVRDHLSK 238
Query: 237 VA 238
A
Sbjct: 239 HA 240
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/235 (56%), Positives = 175/235 (74%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FST ERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALTDLSHVEEASG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P L +A LP SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+
Sbjct: 182 SPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARGVHTLLDRVVRQHV 236
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 180/243 (74%), Gaps = 3/243 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGR+ ELRK++ R+GVF+Q+DGSAYIEQGNTK LA VYGP VR +
Sbjct: 4 LELLSDQG--YRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S +H +IN QYSMA FST ERK RP GDRK++E+SL L+Q AA+++ ++PRSQI
Sbjct: 62 RSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V++LQ+DGGN+ ACVNAATLA++DAGIPMR+YV AC+A +TPL D+ H EE+ G
Sbjct: 122 DIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
G +L +A LP G +A++++ +LH DHL +++ A+ C + +LD ++QHL V+
Sbjct: 182 GTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQVVSA 241
Query: 240 ARG 242
G
Sbjct: 242 LTG 244
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 175/246 (71%), Gaps = 14/246 (5%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-- 58
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLV 61
Query: 59 ----------NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA 108
++S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AA
Sbjct: 62 YLSFLFQIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAA 121
Query: 109 IMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL 168
I++++HPRSQIDI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L
Sbjct: 122 ILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTAL 181
Query: 169 VDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDT 228
D+SH+EE GGP L +A LP SG++A++E+ +LH DHL VL+ A + D+H +LD
Sbjct: 182 ADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLECVLEAAAQAARDVHTLLDR 241
Query: 229 AIKQHL 234
++QH+
Sbjct: 242 VVRQHV 247
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/222 (55%), Positives = 168/222 (75%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ HELRKI + G+FSQ+DGSAYIEQGNTKV+A+VYGP V N+S +H S L
Sbjct: 11 GLRFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTL 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN Q+SMA FS ERK RP+GDRK++EIS+ L + + AIM+E++PRSQIDI+V+V+Q+D
Sbjct: 71 INCQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQSD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+N ATLALIDAG+PM+++V AC++S + L DI+HLEE+ G LT+A LP
Sbjct: 131 GGVIAACINVATLALIDAGVPMKDFVCACTSSYVQEKNLTDINHLEESSGSCQLTLAMLP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+ KV ++S +LHLD+L +L +GC DI+ +L A++
Sbjct: 191 RTAKVVAFQVSSRLHLDNLEELLKITKQGCLDIYNVLQQAVE 232
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 176/234 (75%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR HE+R I+ +L +FS++DGSAY EQGNT+VLAAVYGPR V+NKS + +
Sbjct: 12 GLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAI 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN +YSMA FSTGERK + + DR+++EIS+ +RQ + I++ ++PR+QIDIF++VLQAD
Sbjct: 72 INCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CAC+NAATLAL+DAGIPM+++VV+C+A +PL D++++E+ GGP++ +A LP
Sbjct: 132 GGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
KV ++++ KL LD +VL+ A++GC IH ++D +K+H + RGL
Sbjct: 192 KHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKRGL 245
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 126/234 (53%), Positives = 172/234 (73%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSV 68
G R DGRR ELRKI R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +S +
Sbjct: 11 GYRVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N Q+SMA FSTGERK RP GDRK +E+S L+Q AI+++++PRSQIDI+V++LQA
Sbjct: 71 LVNCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+ ACVNAATLA++DAGIP+R++V A SA DTPL D+S++EE GGP + +A L
Sbjct: 131 DGGNYAACVNAATLAVLDAGIPLRDFVCASSAGFVEDTPLADLSYVEEAAGGPQVALALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
P SG++ ++ L ++H DHL RVL+ A D+H +LD +++H+ +++ G
Sbjct: 191 PGSGQITLLGLDARVHEDHLERVLEAATAAARDVHTVLDRVVRRHVRQMSALLG 244
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 120/226 (53%), Positives = 170/226 (75%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSV 68
G R DGR+ ELRK++ R+GVF+Q+DGSAY+EQGNTK LA VYGP +R ++S +H
Sbjct: 11 GYRLDGRKATELRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRSRTLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+IN QYSMA FST ERK RP GDRK++E+SL L+Q AA+M++++PRSQIDI+V++LQ+
Sbjct: 71 VINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQIDIYVKILQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGGN+ CVNAATLA+IDAGIPMR+YV AC+ +TPL D+ + EE+ G +L +A L
Sbjct: 131 DGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLALALL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P G++A++++ +LH DHL +++ A+ C + +LD ++QHL
Sbjct: 191 PRGGQIALLQMDARLHQDHLETLIEAAMTACKGVSKVLDEVVRQHL 236
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/277 (49%), Positives = 179/277 (64%), Gaps = 45/277 (16%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP------ 54
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGR 61
Query: 55 -------------------------RPVRNKS----IKVHGS--------VLINFQYSMA 77
R R+KS + GS L+N QYS A
Sbjct: 62 APGAGGGLGRRRPAHASVYAAHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSA 121
Query: 78 VFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACV 137
FSTGERK RP GDRK+ E+ LQLRQ AAI++++HP SQIDI+V+VLQADGG + ACV
Sbjct: 122 TFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADGGTYAACV 181
Query: 138 NAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVM 197
NAATLA++DAGIP+R++V ACSA T L D+SH+EE GGP L +A LP SG++A++
Sbjct: 182 NAATLAVLDAGIPVRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALL 241
Query: 198 ELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 242 EMDARLHEDHLERVLEAAARAARDVHTVLDRVVRQHV 278
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN- 59
++LL++ G R DGR+ ELRK++ R+GVF+Q+DGSAY+EQGNTK LA VYGP +R
Sbjct: 4 LELLSDQG--YRLDGRKATELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGA 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S +H +IN QYSMA FST ERK RP GDRK++E+SL L+Q AA++++++PRSQI
Sbjct: 62 RSRALHDRAIINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V++LQ+DGGN+ CVNAATLA+IDAGIPMR+YV AC+ +T L D+ + EE+ G
Sbjct: 122 DIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETSLADLCYAEESGG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+L +A LP G++A++++ +LH DHL +++ A+ C + +LD ++QHL
Sbjct: 182 VSSLALALLPRGGQIALVQMDARLHQDHLDTLIEAAMTACKGVSKVLDQVVRQHL 236
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGR+ ELRKI+ R+GVF+Q+DGSAY+EQGNTKVLA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S H +IN QYSMA FST ERK RP GDRK++E+SL L+Q AA+M+++ PRSQI
Sbjct: 62 RSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V++LQ+DGGN+ CVNAATLA+IDAGIPMR+YV AC+ +TPL D+ + EE G
Sbjct: 122 DIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCACTVGFVDETPLADLCYAEEGGG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+L +A LP S ++A++++ +LH D+L +++ A+ C + +LD ++QHL
Sbjct: 182 VSSLGLALLPRSSQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDEVVRQHL 236
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/214 (61%), Positives = 170/214 (79%), Gaps = 5/214 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
MDLL+ G LR DGRR ELR+IRC++GVF+Q DGSAY+EQGNTKV+AA+YGP +R N
Sbjct: 1 MDLLSRQG--LRTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTN 58
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + S +IN QYSMA FS ERK RPR D K++E++L L+QA++ AI ++++P+SQI
Sbjct: 59 RAKAPNDSAVINCQYSMATFSRSERKRRPR-DNKSAELTLHLKQAMATAIKTDLYPKSQI 117
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETL 178
DIFV+VLQ+DGGN+ CVNAATLALIDAGI M E+V++C++SLA G+TPLVDISHLEET+
Sbjct: 118 DIFVQVLQSDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEETM 177
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVL 212
GGP+LTVA LP+SGKV L + L + VL
Sbjct: 178 GGPSLTVAILPISGKVYTFVLLATILLVCIEHVL 211
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 168/231 (72%), Gaps = 1/231 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-VHGSV 68
G R DGRR E+RK+ C LGVF+Q+DGSAY+++GNT VLAAVYGP VR +K +H
Sbjct: 11 GFRVDGRRAQEMRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVKALHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N Q+S A FST ERK RPRGD K+ E++L L+Q AI+++++PR QIDIFVEVLQA
Sbjct: 71 VVNCQFSAATFSTAERKRRPRGDTKSVEMTLHLQQTFETAILTKLYPRCQIDIFVEVLQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG +NAAT+AL+DAGI +R+YV ACSA + D L+D+++LEE+ G LTVA L
Sbjct: 131 DGSILSVAINAATMALVDAGIGLRDYVCACSAGVFNDAALLDLNNLEESQKGTGLTVAIL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P + ++ ++++S K+H DH+ + ++ A++GC DIHA D IK+ + ++A
Sbjct: 191 PKTERIVLVDMSSKIHSDHVSKTIEAAIEGCKDIHATFDAKIKERVGRLAA 241
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 125/199 (62%), Positives = 156/199 (78%), Gaps = 7/199 (3%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DLL+ G LR DGRR +ELR+IRC+LGVF+Q DGSAY+EQGNTKVLAAVYGP
Sbjct: 5 DLLSSQG--LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSK 62
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
G V++N QYSMA FSTGERK RPRGDRK+ E+S+ LRQA++AAI +E++PRSQIDI
Sbjct: 63 SSAEG-VVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDI 121
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG----DTPLVDISHLEET 177
+VEVLQADGG +CA VNA+TLALIDAGIP++ YV +CSAS+A PL+D+ H+EE
Sbjct: 122 YVEVLQADGGAYCASVNASTLALIDAGIPLKAYVCSCSASMAWLDGVPEPLLDVGHVEEA 181
Query: 178 LGGPNLTVAALPLSGKVAV 196
GG LTVA+LP +G++ +
Sbjct: 182 AGGVTLTVASLPSTGELEI 200
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 163/221 (73%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELR+I+ R+GVF Q+DGSAYIEQGNTK+LA VYGP V K+ +H +
Sbjct: 13 GLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAI 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN +Y +A F+T ERK R D++ +++ +R A A+M++++PRSQIDIF++VLQ+D
Sbjct: 73 INCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GGN C+NAATLAL+DAGI M+++V ACS DTPL+DI+++E++ GGP+LTVA L
Sbjct: 133 GGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLA 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
S K ++E+ +LH+D VL A+ GC IH+ILD+A+
Sbjct: 193 RSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAM 233
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 166/231 (71%), Gaps = 1/231 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R+ CRLGV S++DGSAY+EQGNTK LA++ GP +K+ H V
Sbjct: 8 GLRIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVH 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
INFQYSMA FST ER+ RP+GD+++ +IS +R+ +AI+++++P+SQIDI V++LQAD
Sbjct: 68 INFQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET-LGGPNLTVAAL 188
GGN+ AC+NAATLAL+DAG+PM++++ +C+ASL ++D+++ EE P LT+A L
Sbjct: 128 GGNYSACINAATLALMDAGVPMKDFICSCTASLVDSKTIIDVNNSEELHFSNPLLTLAIL 187
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P S ++ + ++ +LH DHL +L +KGC DI+ I+ + H+ + A
Sbjct: 188 PTSEEIILCQMKSRLHADHLEDILKAGIKGCKDIYEIMHREVLNHVREAAA 238
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/249 (53%), Positives = 165/249 (66%), Gaps = 24/249 (9%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR DGRR ELR+IR R+GVF Q+DGSAYIE GNTKVLAAVYGP RN K
Sbjct: 11 GGLRVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKA 70
Query: 69 LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++N QYSMAVFS +GERK RPRGD K+ E S+QLR A+ A I E++PRSQIDIFVE+L
Sbjct: 71 IVNCQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEIL 130
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP------------LVDISHL 174
Q DG ++CA VNAATLALIDAGIP++ Y V C+ +L +TP ++D + +
Sbjct: 131 QVDGSDYCASVNAATLALIDAGIPIKNYAVGCTVALI-NTPSTDEQDKTLAGGVLDANFV 189
Query: 175 EETLGGPNLTVAALPLSGKVAVME---------LSQKLHLDHLPRVLDCALKGCADIHAI 225
EE G L+V ALP + +V E Q+LHL HL + AL+GC DI I
Sbjct: 190 EEYSPGVTLSVVALPGTSEVESNENGLIVVAHGTGQRLHLSHLEALKQRALQGCKDIRTI 249
Query: 226 LDTAIKQHL 234
+D +++QHL
Sbjct: 250 MDQSVRQHL 258
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 169/234 (72%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R++R ++G +++DGSA E GNTKV+AAVYGPR V+N+S +++ L
Sbjct: 8 GLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R+ +P+GDR+++EISL +RQA+ I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++TV LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPDVTVGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
KV ++++ KL +D V+ A++GC I + + ++ ++ RGL
Sbjct: 188 KLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREVLLENTKQLEYRRGL 241
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 161/231 (69%), Gaps = 2/231 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN--KSIKVHGS 67
G R DGR+ ELR++RC +GVF+Q+DGSAYIEQGNTKVLAA+YGP N +S
Sbjct: 11 GYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDK 70
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
IN ++S A+FS+ ERK R RGDRK ++S ++Q AA+ ++++PRSQIDI+++VL
Sbjct: 71 CFINCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLH 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
+DG +CACVNAATLALIDAGI M++YV ACSASL +T L+DI+H+EE G + A
Sbjct: 131 SDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETSLIDINHVEELAGCAEFSAAI 190
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+P ++ EL+ ++H D L +++D GC DI A++D ++ L + A
Sbjct: 191 MPKLDQIIYSELNGRIHQDELGQLVDAVTNGCKDIFAVIDRFVRSRLEETA 241
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 165/233 (70%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R+IR +G +++DGSA+ E GNTKV+AAVYGPR V N+S ++ L
Sbjct: 8 GLRLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FSTG+R +P+GDR+++EISL +RQ + A I++ + PRSQIDIFV+VLQAD
Sbjct: 68 VRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++TV LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + ++ ++ RG
Sbjct: 188 KLDKVTLLQMDAKLPMDIFENVMQLAIEGCKAIANYIREVLLENTKQLEYRRG 240
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 167/234 (71%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R+IR +G S++DGSA E GNTKV+AAVYGPR V+N++ ++ L
Sbjct: 8 GLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R +P+GDR+++EISL +RQ + A I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++T+ LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
KV ++++ KL +D L V+ A++GC I + + ++ ++ RG+
Sbjct: 188 KLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREVLLENTKQLEYRRGV 241
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 166/234 (70%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R++R ++G S++DGSA E GNTKV+AAVYGPR V+N+S ++ L
Sbjct: 8 GLRLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FSTG+R +P+GDR+++EISL +RQ + I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++TV LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
KV ++++ KL +D V+ A++GC I + + ++ ++ RGL
Sbjct: 188 KLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREILLENTKQLEYRRGL 241
>gi|47220383|emb|CAF98482.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 167/272 (61%), Gaps = 47/272 (17%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR----------- 58
G R DGR+ ELRKI+ R+GVF+Q+DGSAY+EQGNTK LA VYGP V
Sbjct: 11 GYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCV 70
Query: 59 -----NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEV 113
++S H +IN QYSMA FST ERK RP GDRK++E+SL L+Q AA+M+++
Sbjct: 71 CQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQL 130
Query: 114 HPRSQIDIFVEV-------------------------------LQADGGNFCACVNAATL 142
PRSQIDI+V+V LQ+DGGN+ CVNAATL
Sbjct: 131 FPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSVCVNAATL 190
Query: 143 ALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK 202
A+IDAGIPMR+YV AC+ +TPL D+ + EE+ G +L +A LP G++A++++ +
Sbjct: 191 AVIDAGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIALVQMDAR 250
Query: 203 LHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
LH D+L +++ A+ C + +LD ++QHL
Sbjct: 251 LHQDNLDALMEAAMTACKGVSKVLDEVVRQHL 282
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 156/213 (73%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR+DGRR E+R+IR +G S++DGSA E GNTKV+AAVYGPR V+N+S ++ L
Sbjct: 8 GLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDKAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R +P+GDR+++EISL +RQ + I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPM + V +CSA TPL+D++++E++ GGP++TV LP
Sbjct: 128 GGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
KV ++++ KL +D L V+ A +GC I
Sbjct: 188 KLDKVTLLQMDSKLPIDILENVMQLATEGCKAI 220
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 159/224 (70%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR++R +G S+++GSA E GNTKVLAAVYGPR V+NKS ++ L
Sbjct: 8 GLRQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FSTG+R +P+GDR+++EISL +RQ + I++ + PRSQIDIFV+VLQAD
Sbjct: 68 VRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIFVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA L+D++++E++ GGP++TV LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSNALLDLNYVEDSAGGPDVTVGFLP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
KV ++++ KL +D V++ A++GC I + + +H
Sbjct: 188 KLDKVTLLQMDAKLPIDVFEDVMELAIEGCKAIATYIRNVMLEH 231
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 156/213 (73%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R+IR +G S++DGSA E GNTKV+AAVYGPR V+N+S ++ L
Sbjct: 8 GLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQISSHAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FSTG+R + +GDR+++EISL +RQ + A I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYCMANFSTGDRMRKSKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++T+ LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
KV ++++ KL +D L V+ A++GC I
Sbjct: 188 KLDKVTLLQMDSKLPIDILENVMQLAIEGCKAI 220
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 167/234 (71%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G R DGRR +E+R+++ +GV +++DGSA E GNT+V+AAVYGPR V+NK +V+
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + PRSQIDIFV+VLQA
Sbjct: 69 LVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++TV L
Sbjct: 129 DGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGPDVTVGFL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+D A++GC I + + ++ ++ RG
Sbjct: 189 TKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIREVLLENTRRLECQRG 242
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 155/229 (67%), Gaps = 8/229 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR+DGRR ELR + C + Q+DGSAY++QGNT+V+A VYGP + H
Sbjct: 17 GLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDAQ------HDKAF 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN Q+SMA FST ERK RP GD+ E SL L++ AAI+++ +P S+IDIFV++LQ+D
Sbjct: 71 INCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIFVQILQSD 130
Query: 130 GGNF--CACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
G N +NA T+ALIDAGIPM++YV A S +L DTP+VD+++ EE GP L V
Sbjct: 131 GSNCDKAVSINAITMALIDAGIPMKDYVCATSVTLINDTPIVDLNYFEERGPGPELIVGT 190
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
LP SGK+ ++++ +LH+D++ +VL + G +H ILDT IK+HL K
Sbjct: 191 LPKSGKIVFLQVNSRLHIDNMEKVLKEGMNGNQRVHTILDTLIKKHLEK 239
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 162/251 (64%), Gaps = 27/251 (10%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR DGRR ELR+IR R+GVF Q+DGSAYIE GNTKVLAAVYGPR R+ + +
Sbjct: 10 GGLRIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKA 69
Query: 69 LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+IN QYSMAVFS +GERK RPRGD K+ E S QLR A+ A I E++PRSQID+FVEVL
Sbjct: 70 IINCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-----------TPLVDISHLE 175
Q DG ++CA VNAATLALIDAGIP++ Y + CS +L T ++D +++E
Sbjct: 130 QVDGSDYCASVNAATLALIDAGIPIKNYAIGCSVTLVNKPSVEDEDKTLATGVLDANYVE 189
Query: 176 ETLGGPNLTVAALPLSGKVAVMELS------------QKLHLDHLPRVLDCALKGCADIH 223
E P +T++ + L+G +E+ Q+LHL L + L+GC DI
Sbjct: 190 EC--SPGVTLSVVALAGTNNDIEVDGNGLIVVAHGAGQRLHLSCLETLKQRVLQGCQDIK 247
Query: 224 AILDTAIKQHL 234
ILD ++ HL
Sbjct: 248 TILDHGVRHHL 258
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 159/250 (63%), Gaps = 24/250 (9%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR+DGRR ELR+IR R+GVF Q+DGSAYIE GNTKVLAAVYGP ++ +
Sbjct: 11 GGLRSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKA 70
Query: 69 LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+N QYSMAVFS +GERK RPRGD K+ E S QLR A+ A I E++PRSQIDIFVEVL
Sbjct: 71 FVNCQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVEVL 130
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD------------TPLVDISHL 174
Q DG ++CA VNA+TLALIDAGIP++ Y V C+ SL T ++D + +
Sbjct: 131 QVDGSDYCASVNASTLALIDAGIPIKNYAVGCTVSLINKLTTEEEEDKTLATGVLDANFV 190
Query: 175 EETLGGPNLTVAALPL---------SGKVAVME-LSQKLHLDHLPRVLDCALKGCADIHA 224
EE G L+V ALP SG + V Q+LHL L + AL+GC DI
Sbjct: 191 EECSPGVTLSVVALPETNNEVEVDGSGLIVVAHGAGQRLHLSRLEALKKRALQGCQDIKE 250
Query: 225 ILDTAIKQHL 234
ILD ++ HL
Sbjct: 251 ILDGGVRHHL 260
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/250 (50%), Positives = 162/250 (64%), Gaps = 23/250 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV- 68
GLR DGRR ELR+IR ++GVF Q+DGSAYIEQGNTK+L VYGP R + + V
Sbjct: 12 GLRPDGRRALELRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTSKVT 71
Query: 69 --LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++N QYSMAVFS +GERK +PRGDRK+ E SLQL+ A+ A I E++PRSQIDI+VE
Sbjct: 72 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQEKSLQLKHAMEAIIHLELYPRSQIDIYVE 131
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL-----------VDISH 173
VLQ DG +CA +NA+TLALIDAGIP++ Y V C+ +L + L +D ++
Sbjct: 132 VLQVDGSEYCASINASTLALIDAGIPIKNYAVGCTVTLINSSSLDNEDSSLGTGVLDANY 191
Query: 174 LEETLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADIHAIL 226
+EE G L+V ALP S G + V E Q+LHL H + D L GC DI IL
Sbjct: 192 IEECNRGVTLSVIALPNSDGISKDGLIVVAEGAGQRLHLSHFESLKDRVLHGCQDIKVIL 251
Query: 227 DTAIKQHLIK 236
D A++ +L +
Sbjct: 252 DQAVRHYLTE 261
>gi|390344519|ref|XP_785829.2| PREDICTED: exosome complex component RRP41-like, partial
[Strongylocentrotus purpuratus]
Length = 194
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 99/175 (56%), Positives = 142/175 (81%)
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+H V+IN QYSMA FST ERK RP+GDRK++E+SL L++ A I + ++PRSQIDIFV
Sbjct: 14 LHDKVIINCQYSMATFSTNERKNRPQGDRKSTEMSLHLQRTFEATIQTHLYPRSQIDIFV 73
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
++LQADGGN+CACVNAATLA+I+AGIPM++YV ACS+ +TPL D+S+LEE+ GGP +
Sbjct: 74 QILQADGGNYCACVNAATLAIINAGIPMKDYVCACSSGYVNNTPLTDVSYLEESQGGPVV 133
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
TVA LP S ++A+ ++ +LH+DHL +VL+ A KGC D++A+++ A+K+H+ ++A
Sbjct: 134 TVAMLPKSEQIALFKMDNRLHVDHLEQVLEVASKGCKDMYAVMNAAVKEHVSRMA 188
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 167/234 (71%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G R DGRR +E+R+++ +GV S++DGSA E GNT+V+AAVYGPR V+N+S +V+
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQQVNSKEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + P SQIDIFV+VLQA
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIFVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V +CSA +PL+D++++E++ GGP++TV L
Sbjct: 129 DGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSSPLLDLNYIEDSAGGPDVTVGIL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V++ A++GC I + + ++ ++ RG
Sbjct: 189 AKMDKVTLLQMDAKLPMDTFETVMELAIEGCKAIATYIREILLENTKQLEYRRG 242
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 166/234 (70%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS-V 68
G R DGRR +E+R+++ +GV +++DGSA E GNT+V+AAVYGPR V+NK +V+ +
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + PRSQIDI+V+VLQA
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V +CSA TPL+D+++LE++ GG ++TV L
Sbjct: 129 DGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGIL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + ++ K+ RG
Sbjct: 189 AKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIATYIREVLLENTKKLECQRG 242
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGR+ H++R I +LGV++Q+DGSAY+EQGNTKVL AVYGP R +
Sbjct: 1 MNIISEHG--FRLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQR 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +N QYSMA FST ERK RPRGDR++ E + + +A AI+ E +P +QID
Sbjct: 59 NRTQEDRCTVNCQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQID 118
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLG 179
IF E+LQADG + ACVNAATLAL DAG+PMR V A S + A D TP D+S EE+
Sbjct: 119 IFCELLQADGSHLAACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNV 178
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P +T+A + ++ + EL +LH DHL +L CA + +H+ L+ A+ H+ G
Sbjct: 179 MPRITIANISGMDEIILTELQNRLHRDHLIPMLQCARMAASQVHSCLEVAVSAHISSTIG 238
Query: 240 ARG 242
R
Sbjct: 239 IRN 241
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 122/247 (49%), Positives = 159/247 (64%), Gaps = 20/247 (8%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+IR ++GVF Q+DGSAYIEQGNTK+L VYGP R + + +
Sbjct: 12 GLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGI 71
Query: 70 INFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+N QYSMAVFS +GERK +PRGDRK+ E SLQL+ A+ A I E++PRSQIDI+VE LQ
Sbjct: 72 VNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQ 131
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----------LVDISHLEE 176
DG +CA VNAATLALIDAGIP++ Y + C+ +L + ++D ++LEE
Sbjct: 132 VDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
Query: 177 TLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
G L+V ALP S G + V + Q+LHL + L GC DI ILD A
Sbjct: 192 CAPGVTLSVVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTILDHA 251
Query: 230 IKQHLIK 236
++Q+L +
Sbjct: 252 VRQYLTE 258
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/247 (48%), Positives = 158/247 (63%), Gaps = 20/247 (8%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+IR ++GVF Q+DGSAYIEQGNTK+L VYGP R + + +
Sbjct: 12 GLRPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGI 71
Query: 70 INFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+N QYSMAVFS +GERK RPRGDRK+ E SLQL+ A+ A I E++PRSQIDI+VE LQ
Sbjct: 72 VNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQ 131
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----------LVDISHLEE 176
DG +C VNAATLALIDAGIP++ Y + C+ +L + ++D ++LEE
Sbjct: 132 VDGSEYCTSVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
Query: 177 TLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
G L++ ALP S G + V + Q+LHL + L GC DI ILD A
Sbjct: 192 CAPGVTLSIVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTILDHA 251
Query: 230 IKQHLIK 236
++Q+L +
Sbjct: 252 VRQYLTE 258
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 166/234 (70%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS-V 68
G R DGRR +E+R+++ +G+ +++DGSA E GNT+V+AAVYGPR V+NK +V+ +
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + P SQIDI+V+VLQA
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V +CSA TPL+D+++LE++ GG ++TV L
Sbjct: 129 DGGTRSACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGIL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + + ++ K+ RG
Sbjct: 189 AKMDKVTLLQMDAKLPMDTFENVMGLAIEGCKAIASYIREVLLENTKKLECQRG 242
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 163/234 (69%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G R DGRR +E+R+++ +GV +++DGSA E GNT+V+AAVYGPR V+NK +V+
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + P SQIDI+V+VLQA
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ +CSA TPL+D+++LE++ GG ++TV L
Sbjct: 129 DGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGIL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + ++ K+ RG
Sbjct: 189 AKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLENTKKLECQRG 242
>gi|327291858|ref|XP_003230637.1| PREDICTED: exosome complex exonuclease RRP41-like, partial [Anolis
carolinensis]
Length = 188
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 98/184 (53%), Positives = 142/184 (77%)
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
++S +H ++N Q+S+A FSTGERK RP GDR+TSE+SL L+Q AAI+++++PRSQ
Sbjct: 4 SRSKALHDQAVVNCQFSLATFSTGERKRRPHGDRQTSEMSLHLKQTFEAAILTQLYPRSQ 63
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
IDI+V++LQADGGN+CA VNAATLA+IDAGIP+R+YV A SA DTPL D++++EE
Sbjct: 64 IDIYVQILQADGGNYCASVNAATLAVIDAGIPLRDYVCASSAGFIEDTPLADLNYVEEAS 123
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GGP L +A LP S ++A++E++ +LH DHL R+++ A K C D++ +LD +++HL +V
Sbjct: 124 GGPQLALALLPKSEQIALLEMNARLHEDHLERIMEAASKACKDVYLVLDQVVREHLQEVT 183
Query: 239 GARG 242
A G
Sbjct: 184 AALG 187
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 162/234 (69%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G R DGRR +E+R+++ +GV ++DGSA E GNT+V+AAVYGPR V+NK +V+
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + P SQIDI+V+VLQA
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQA 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ +CSA TPL+D+++LE++ GG ++TV L
Sbjct: 129 DGGTRSACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGIL 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + ++ K+ RG
Sbjct: 189 AKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLENTKKLECQRG 242
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 159/252 (63%), Gaps = 28/252 (11%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-----IK 63
GGLR DGRR ELR+IR R+GVF Q+DGSAY+EQG TK+LA VYGP R K+
Sbjct: 10 GGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKA 69
Query: 64 VHGSVLINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
V G ++N QYS AVFS GERK +PRGDRK+ E S QLR A+ A I E+ RSQIDI
Sbjct: 70 VKG--IVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDI 127
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS----LAGD-------TPLVD 170
FVEVLQ DG +FC VNAATLALIDAGIP+++Y + CS + L GD T ++D
Sbjct: 128 FVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILD 187
Query: 171 ISHLEETLGGPNLTVAALP--------LSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
+ +EE G L+V ALP S + Q+LHL L + AL+GC DI
Sbjct: 188 ANWIEECSPGVTLSVVALPKVVDETETKSSVILCHGAGQRLHLSRLEPLRLRALQGCRDI 247
Query: 223 HAILDTAIKQHL 234
AILD A+K HL
Sbjct: 248 RAILDQAVKDHL 259
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/254 (49%), Positives = 161/254 (63%), Gaps = 23/254 (9%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
E GLR DGRR ELR+IR ++GVF Q+DGSAYIE GNTK+L VYGP RN + +
Sbjct: 8 EDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRST 67
Query: 66 GSV---LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
V ++N QYSMAVFS +GERK +PRGDRK+ E SLQL+ A+ A I E++PRSQID
Sbjct: 68 SKVTKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQID 127
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-------DTPL----V 169
I+VE LQ DG +CA VNAATLALIDAGIP++ Y + C+ +L D L +
Sbjct: 128 IYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLERGVL 187
Query: 170 DISHLEETLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADI 222
D +++EE G L+V ALP S G + V + Q+LHL + L GC DI
Sbjct: 188 DANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQDI 247
Query: 223 HAILDTAIKQHLIK 236
ILD A++Q+L +
Sbjct: 248 KTILDHAVRQYLTE 261
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 160/252 (63%), Gaps = 23/252 (9%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
E GLR DGRR ELR+IR ++GVF Q+DGSAYIE GNTK+L VYGP RN + +
Sbjct: 24 EDQNGLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRST 83
Query: 66 GSV---LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ ++N QYSMAVFS +GERK +PRGDRK+ E SLQL+ A+ A I E++PRSQID
Sbjct: 84 SKITKGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQID 143
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-----------DTPLV 169
I+VE LQ DG +CA VNAATLALIDAGIP++ Y + C+ +L + ++
Sbjct: 144 IYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKGVL 203
Query: 170 DISHLEETLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADI 222
D +++EE G L+V ALP S G + V + Q+LHL + L GC DI
Sbjct: 204 DANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQDI 263
Query: 223 HAILDTAIKQHL 234
ILD A++Q+L
Sbjct: 264 KTILDHAVRQYL 275
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 161/234 (68%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R++ +LGV ++DGSA E GNTKV+AAVYGP V+NK+ ++ L
Sbjct: 8 GLRLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R R +GDR+ +EISL +RQ + A I++ + PR+QIDIFV+VLQAD
Sbjct: 68 VRCEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPM + V +C+A TPL+D++++E++ GGP++ V +
Sbjct: 128 GGTRSACINAATLALADAGIPMCDLVTSCAAGYLNSTPLLDMNYMEDSAGGPDVAVGLMT 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
K++++++ KL +D V+ A++GC I + + ++ ++ +GL
Sbjct: 188 KMDKLSLLQMDSKLPMDIFETVMQLAIEGCKAIVRYIQDVLLENTKQLEYQKGL 241
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 156/240 (65%), Gaps = 3/240 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGR+ H++R + +LGV+SQ+DGSAY+EQGNTKVL AVYGP + +
Sbjct: 1 MSIISEHG--FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQR 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S + +IN QYSMA FST ERK RPRGDR++ E + + +A AAI++E +PRSQID
Sbjct: 59 SRLLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAILTENYPRSQID 118
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLG 179
+F E+LQADG + ACVN TLAL DAG+PMR V A S + A G VD++ EE
Sbjct: 119 VFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVNSREEMGI 178
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P LTVA + V + EL +LH +HL +L A K A +H+ L+ A+ H+ G
Sbjct: 179 VPRLTVATISGQDAVVLAELQNRLHKNHLMVILGSARKATAHVHSCLEAAVLTHIKAAIG 238
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 155/240 (64%), Gaps = 3/240 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGR+ H++R + +LGV+SQ+DGSAY+EQGNTKVL AVYGP + +
Sbjct: 1 MSIISEHG--FRQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQR 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S + +IN QYSMA FST ERK RPRGDR++ E + + +A AI++E +PRSQID
Sbjct: 59 SRLLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEEAILTENYPRSQID 118
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEETLG 179
+F E+LQADG + ACVN TLAL DAG+PMR V A S + A G VD++ EE
Sbjct: 119 VFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVNSREEMGI 178
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P LTVA + V + EL +LH +HL +L A K A +H+ L+ A+ H+ G
Sbjct: 179 VPRLTVATISGQDAVVMAELQNRLHKNHLMVILGNARKATAHVHSCLEAAVLTHIKAAIG 238
>gi|403303026|ref|XP_003942148.1| PREDICTED: uncharacterized protein LOC101043625 [Saimiri
boliviensis boliviensis]
Length = 413
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 128/167 (76%)
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQ
Sbjct: 238 ALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 297
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
ADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GGP L +A
Sbjct: 298 ADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALAL 357
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 358 LPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 404
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 139/180 (77%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R+IR +G S++DGSA E GNTKV+AAVYGPR V+N++ ++ L
Sbjct: 8 GLRLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R +P+GDR+++EISL +RQ + A I++ + PRSQIDI+V+VLQAD
Sbjct: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAATLAL DAGIPMR+ V +CSA TPL+D++++E++ GGP++T+ LP
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTLGILP 187
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/214 (50%), Positives = 155/214 (72%), Gaps = 2/214 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSV 68
GLR DGRR +E+R+I +GV S++DGSA E GNTKV+AAVYGPR ++NKS K +
Sbjct: 8 GLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FSTG+R+ R + DR+++E+SL +RQ + A I++E+ P SQIDIF++VLQA
Sbjct: 68 VVLCEYSMAQFSTGDRR-RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V+CSA TPL+D++++E++ GG ++TV L
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGIL 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
P KV+++++ KL ++ V A +GC I
Sbjct: 187 PKLDKVSLLQMDAKLPMETFETVFALASEGCKAI 220
>gi|149066120|gb|EDM15993.1| exosome component 4 (predicted), isoform CRA_b [Rattus norvegicus]
Length = 211
Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 128/166 (77%)
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQA
Sbjct: 37 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 96
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GGP L +A L
Sbjct: 97 DGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALL 156
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHV 202
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 158/240 (65%), Gaps = 3/240 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGR+ +++R + +LGV+SQ+DGSAY+EQGNTKVL AVYGP + +
Sbjct: 1 MNIISEHG--YRQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQR 58
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S + +IN QYSMA FST ERK RPRGDR++ E + + +A AA+++E +PRSQID
Sbjct: 59 SRLLEDRCIINCQYSMATFSTNERKERPRGDRRSLEFARLMEKAFEAAVLTENYPRSQID 118
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLG 179
+F E+LQADG + ACVN TLAL DAG+PMR V A S + A + VD++ EE
Sbjct: 119 VFCELLQADGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNGVACVDVNSREEMGI 178
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P LTVA + V + EL +LH ++L +L+ A + A +H+ L+ A+ H+ G
Sbjct: 179 IPRLTVATISGQDAVVLAELQNRLHKNYLIVILEAARRATAHVHSCLEAAVLTHIKAAIG 238
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/214 (50%), Positives = 154/214 (71%), Gaps = 2/214 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSV 68
GLR DGRR +E+R+I +GV S++DGSA E GNTKV+AAVYGPR ++NKS K +
Sbjct: 8 GLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FSTG+R+ R + DR+++E+SL +RQ + A I++E+ P SQIDIF++VLQA
Sbjct: 68 VVLCEYSMAQFSTGDRR-RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQA 126
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPMR+ V+CSA TPL+D++++E++ GG ++TV L
Sbjct: 127 DGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGIL 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
P KV ++++ KL ++ V A +GC I
Sbjct: 187 PKLDKVTLLQMDAKLPMETFETVFALASEGCKAI 220
>gi|355686798|gb|AER98190.1| exosome component 4 [Mustela putorius furo]
Length = 186
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 127/166 (76%)
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQA
Sbjct: 13 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 72
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG + ACVNAATLA++DAG+PMR++V ACSA T L D+SH+EE GGP L +A L
Sbjct: 73 DGGTYAACVNAATLAVLDAGVPMRDFVCACSAGFVDSTALADLSHVEEAAGGPQLALALL 132
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P SG++A++E+ +LH DHL VL+ A + D+H +LD ++QH+
Sbjct: 133 PASGQIALLEMDARLHEDHLESVLEAAARAARDVHTLLDRVVRQHV 178
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 155/223 (69%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR++ ++G+F+ +DGSAYIE GNTK +AAVYGP+ + +S ++H +
Sbjct: 23 GLRVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAV 82
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN +Y++A FS+GERK + + D++ EI+ +++ +M+ PRS+IDI+V++LQ D
Sbjct: 83 INVEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLD 142
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A +NA LA+IDAGIPM +YV+ACSA + + L+D++++EE+ P LT A LP
Sbjct: 143 GGALHAAINATCLAMIDAGIPMSDYVIACSAGFSNGSALLDLNYIEESAELPVLTAALLP 202
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
SGK+ ++ + +LHL+H VL+ A +GC + L+ +++
Sbjct: 203 KSGKLTMLSMESRLHLNHFQDVLNLATEGCNTLAESLNETVRK 245
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 127/166 (76%)
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQIDI+V+VLQA
Sbjct: 37 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 96
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE GGP L +A L
Sbjct: 97 DGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALL 156
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+
Sbjct: 157 PASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHV 202
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 160/234 (68%), Gaps = 7/234 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SV 68
G R DGRR +E+R+++ +GV +++DGSA E GNT+V+AAVYGPR V+NK +V+
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +Y MA FSTG+R+ +P+GDR+++EISL +RQ + A+I++ + P SQIDI+V+VL++
Sbjct: 69 LVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLRS 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
AC+NAATLAL DAGIPMR+ +CSA TPL+D+++LE++ GG ++TV L
Sbjct: 129 ------ACINAATLALADAGIPMRDIATSCSAGYLCSTPLLDLNYLEDSAGGSDVTVGIL 182
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV ++++ KL +D V+ A++GC I + + ++ K+ RG
Sbjct: 183 AKMDKVTLLQMDAKLPIDTFENVMGLAIEGCKAIATYIREVLLENTKKLECQRG 236
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 147/234 (62%), Gaps = 3/234 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP +
Sbjct: 1 MSIISEHG--FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESK-A 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK RPRGDRK++EIS L +A + I++E PRSQID
Sbjct: 58 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADVYECLAVVAQQHL 231
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 148/225 (65%), Gaps = 3/225 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSV 68
GLR DGRR +E+R++ R+GV +++DGS+Y EQGNTK+ A+YGP KS+ S
Sbjct: 11 GLRIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRAS- 69
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I +++M+ FST ERK + R D+ E S ++QA + +++ + PRSQIDI+V+VLQ+
Sbjct: 70 -IKCEFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQS 128
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A +NA TLA+IDAGIPMR+YV ACSA+ + L+D++H+EE GG +L ++
Sbjct: 129 DGGLKSAAINAVTLAMIDAGIPMRDYVCACSATFIEGSALMDLNHMEERSGGADLLLSIH 188
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P G V + + K+ + VLD AL GC I+ +L +K+H
Sbjct: 189 PQLGGVISINMESKVPQEMFESVLDMALAGCKKIYYLLQEQVKKH 233
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP ++
Sbjct: 1 MNIISEHG--FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS- 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK R RGDRK++EIS L +A + I++E PRSQ+D
Sbjct: 58 SKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLD 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHL 231
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 156/233 (66%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R + +GV +DGSA GNT+V+A VYGP V NK+ ++H L
Sbjct: 10 GLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKAL 69
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTGER+ R + DR+ +E+SL + Q + AAIM+ + PRSQIDI+V+VLQAD
Sbjct: 70 VRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAA++AL DAGIPMR+ VV+C+A TPL+D+++ E++ GGP+L V P
Sbjct: 130 GGTRAACINAASMALADAGIPMRDLVVSCAAGYLNSTPLLDLNYQEDSGGGPDLVVGYFP 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
K++++++ K+ ++ +VL+ A +G + + ++ +A ARG
Sbjct: 190 KLEKLSLLQMDSKVSIETFEKVLELATEGAKAVATFTREKLLENTRTLASARG 242
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 150/218 (68%), Gaps = 16/218 (7%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-PVRN 59
M+LL++ G R DGRR E RKI+ RLGVF +DGSA ++QGNTKVLAAV+GPR P+ +
Sbjct: 1 MELLSD--EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMAS 58
Query: 60 KSIKVHGSV-----LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ HG+V +++ +YS A F++ ERK R RGD+K EISL L++ A I++ ++
Sbjct: 59 Q----HGAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLY 114
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREY--VVACSASLAGDT--PLVD 170
PRS I IFVEVLQADGG++ CVNAATLALIDAGIP+R+ V+C ++ + L+D
Sbjct: 115 PRSAISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLD 174
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHL 208
+++ EE+ P + +P +G++ E+ +LH+D+L
Sbjct: 175 LAYSEESARIPTIVATGMPKTGEMVFFEVESRLHMDYL 212
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGRR ++R + RLG+ ++GS+Y+E GNTKVL AVYGP +
Sbjct: 1 MSIISEHG--FRLDGRRPAQIRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGK-A 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK RPRGDRK++E+S L +A + I++E PRSQID
Sbjct: 58 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEMSRLLEKAFESVILTESFPRSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVEGNPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V++ A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVVLVELHNRLHIDHLSVVMEAAKATCADVYECLAVVAQQHL 231
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 150/238 (63%), Gaps = 39/238 (16%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV------------ 57
G R DGRR +E+R+++ +GV +++DGSA E GNT+V+AAVYGPR V
Sbjct: 9 GFRVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLI 68
Query: 58 -------------RNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQA 104
R K K +L MA FSTG+R+ +P+GDR+++EISL +RQ
Sbjct: 69 SKKAKREGLRGRSRTKVSKSTAKMLW-----MADFSTGDRRRKPKGDRRSTEISLVIRQT 123
Query: 105 VSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG 164
+ A+I++ + PRSQIDIFV+VLQADGG AC+NAATLAL DAGIPMR+ V +CSA
Sbjct: 124 MEASILTHLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSA---- 179
Query: 165 DTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
D++++E++ GGP++TV L KV ++++ KL +D V+D A++GC I
Sbjct: 180 -----DLNYIEDSAGGPDVTVGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAI 232
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 149/218 (68%), Gaps = 16/218 (7%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-PVRN 59
M+LL++ G R DGRR E RKI+ RLGVF +DGSA ++QGNTKVLAAV+GPR P+ +
Sbjct: 1 MELLSD--EGFRFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMAS 58
Query: 60 KSIKVHGSV-----LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ HG+V +++ +YS A F++ ERK R RGD+K EISL L++ A I++ ++
Sbjct: 59 Q----HGAVSQEKCIVDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLY 114
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREY--VVACSASLAGDT--PLVD 170
PRS I IFVEVLQADGG++ CVNAATLALIDAGIP+R+ V+C ++ + L+D
Sbjct: 115 PRSAISIFVEVLQADGGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLD 174
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHL 208
+++ EE+ P + +P +G++ E+ +LH+D+
Sbjct: 175 LAYSEESARIPTIVATGMPKTGEMVFFEVESRLHMDYF 212
>gi|124487858|gb|ABN12012.1| hypothetical protein [Maconellicoccus hirsutus]
Length = 138
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/135 (65%), Positives = 114/135 (84%), Gaps = 1/135 (0%)
Query: 112 EVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVD 170
E++P SQIDI++EVLQADG N+C CVNAATLALIDAGIP++EY++ACSASL GD PL+D
Sbjct: 1 ELYPFSQIDIYLEVLQADGSNYCTCVNAATLALIDAGIPLKEYIIACSASLGNGDVPLID 60
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+SHLEE+LGG NLT+AALPLSG++ V+E+SQK H+DHLP+VL+ A+ GC I+ ILD+A+
Sbjct: 61 VSHLEESLGGSNLTIAALPLSGQITVLEMSQKFHIDHLPQVLNEAMNGCQQIYKILDSAV 120
Query: 231 KQHLIKVAGARGLGR 245
K HL +V G G+
Sbjct: 121 KTHLTEVGTISGWGK 135
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 149/226 (65%), Gaps = 2/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELR+I ++GV +++DGSAY EQGNTK++AAVYGPR + + +
Sbjct: 11 GLRIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAI 70
Query: 70 INFQYSMAVFSTGERK--TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ +++ + FST ERK + +GDR T+EIS ++QA + I + ++PRSQI+I+++VLQ
Sbjct: 71 VKCEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
+DGG A +NA+TLALIDAGI M+++V A S S ++D++H+EE GGP+ ++
Sbjct: 131 SDGGLKAAAINASTLALIDAGISMKDFVCAVSTSCIDGVAVLDLNHIEERSGGPDCLLSI 190
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P G V + + K+ D VL+ KGC I +IL +K++
Sbjct: 191 QPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDQVKKY 236
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 15/237 (6%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR---------- 58
GLR DGRR E+R+IR R G+FS+ DGSAY EQGNTKV+A VYGPR +R
Sbjct: 25 AGLRVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAGGAAAV 84
Query: 59 -----NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEV 113
N + ++N +++ A F+T ERK + GDRK E+SL ++Q A + +++
Sbjct: 85 GTGSGNAASNTQPRAVVNCEFTQAAFATSERKPQRSGDRKKVEMSLAVKQIFEACVQTQL 144
Query: 114 HPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISH 173
+PRSQIDIFV+VL ADGG A +NA TLALIDAGI + ++VVA SA T L D+++
Sbjct: 145 YPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQTMLCDLNY 204
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
EE P + +A P + K+ ++++ KL L+ +++ A +GC I+ +L A+
Sbjct: 205 AEEVARAPQVVMALNPRTQKLNLLQMECKLPLELFESLMEVATEGCNQIYDLLQNAL 261
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/258 (43%), Positives = 150/258 (58%), Gaps = 19/258 (7%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP +
Sbjct: 117 MSIISEHG--FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGK-A 173
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK RPRGDRK++EIS L +A + I++E PRSQID
Sbjct: 174 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQID 233
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 234 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVDAKPIVDLTSREETDLL 293
Query: 181 PNLTVAALP--------------LSGK--VAVMELSQKLHLDHLPRVLDCALKGCADIHA 224
P +TV+ + G+ V ++EL +LH+DHL V+D A CAD++
Sbjct: 294 PRVTVSGFSSIILLLHSKFQLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADVYE 353
Query: 225 ILDTAIKQHLIKVAGARG 242
L +QHL A G
Sbjct: 354 CLAVVAQQHLKACAPILG 371
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR---------- 58
GLR DGRR E+R+IR R G+FS+ DGS+Y EQGNTKV+A VYGPR +R
Sbjct: 23 AGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSG 82
Query: 59 ---------NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAI 109
N + +N +++ A F+T ERK + GDRK E+SL ++Q A I
Sbjct: 83 AAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEACI 142
Query: 110 MSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
++++PRSQIDIFV+VL ADGG A +NA TLALIDAGI + ++VVA SA T L
Sbjct: 143 QTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYLQQTMLC 202
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
D+++ EE P + +A P + K+ ++++ KL L+ +++ A +GC I+ +L A
Sbjct: 203 DLNYAEEVARAPQMIIALNPRTQKLNLLQMECKLQLELFESLMEVATEGCNQIYDLLQNA 262
Query: 230 I 230
Sbjct: 263 T 263
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 151/225 (67%), Gaps = 1/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +E+R++ ++G+F+++DGSAY EQGNTK+ AVYGPR V + +H +
Sbjct: 11 GLRIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAI 70
Query: 70 INFQYSMAVFSTG-ERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N +YS A FS+ +RK + D+++ EI+ ++QA + I + PRSQIDI+V+VLQA
Sbjct: 71 VNCEYSQAAFSSATDRKPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVLQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A +NAATLA+IDAG+PMR+++ ACSA+ PL+D++ +EE GG +L ++
Sbjct: 131 DGGLKAAALNAATLAVIDAGLPMRDFICACSATFIEGVPLLDMNQMEERSGGADLLLSIQ 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P G V + + K+ D VL+ A GC I A+L T +K+H
Sbjct: 191 PQLGGVISLNMESKVPQDMFESVLELANLGCMKIFALLQTEVKRH 235
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 148/203 (72%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R++ LGV ++GSA E GNTKV+AAVYGP V N+S ++ L
Sbjct: 8 GLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R+ + +G+R+++EISL +RQ + AAI++ + P+SQIDI+V+VLQAD
Sbjct: 68 VRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAA LAL +AGIPMR+ V +C+A TPL+D++++E++ GGP++TVA P
Sbjct: 128 GGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALFP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVL 212
KV+++++ KL L+H V
Sbjct: 188 KVDKVSLLQMDSKLPLEHFENVF 210
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 148/203 (72%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R++ LGV ++GSA E GNTKV+AAVYGP V N+S ++ L
Sbjct: 8 GLRLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTG+R+ + +G+R+++EISL +RQ + AAI++ + P+SQIDI+V+VLQAD
Sbjct: 68 VRCEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AC+NAA LAL +AGIPMR+ V +C+A TPL+D++++E++ GGP++TVA P
Sbjct: 128 GGTRSACINAAALALAEAGIPMRDLVASCAAGYLNGTPLLDLNYVEDSGGGPDVTVALFP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVL 212
KV+++++ K+ L+H V
Sbjct: 188 KVDKVSLLQMDSKMPLEHFENVF 210
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 145/233 (62%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR++ C LG +S +DGSA ++QG T+VLA V+GP V +S H
Sbjct: 12 AGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKC 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I ++ FS +RK R DR + E SL L+Q A+M ++PR+Q+DI V VLQ
Sbjct: 72 IIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQG 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG +NA +LAL+DAG+ M+E V ACS +L P++D+++ E++ GG + +AA
Sbjct: 132 DGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAF 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
P+ G++ +++ +L + L ++ A++G + + T +K++ ++AGAR
Sbjct: 192 PIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGAR 244
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 148/224 (66%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRRG E+R++R R GVF +DGSAY+E G TK++A V GPR V + + + + +
Sbjct: 12 GLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGI 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N +Y++A FS ERK R +RK EI+L +++ AIM ++PR+QIDI++ V+Q+D
Sbjct: 72 VNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG +NAA+LAL+DAG+ M + VVACSA P++D++++E+ LGGP L VA LP
Sbjct: 132 GGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
K+ + ++ +L L+ VL A C +H +L A+K+H
Sbjct: 192 EKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEH 235
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 159/234 (67%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+I C+L V S +DGSA E GNTKVLAAV+GP V ++ + +
Sbjct: 8 GLRLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAI 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTGER+ R +GDR+++E+S+ +R + AI+ E+ PRSQID++V+VLQAD
Sbjct: 68 VVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA +NAA LAL AG+P+R+ V +C+A TPL+D++ E++ GGP+L VA P
Sbjct: 128 GGTRCAAINAAVLALAAAGVPLRDLVASCAAGYLDGTPLLDLNFTEDSGGGPDLAVALAP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
G + ++++ +L +D VLD A GC I ++ A+ +H ++A ARG+
Sbjct: 188 REGLLVLVQMDNRLPVDTFQAVLDLARDGCRTISGVMRAALLEHTKRLAVARGM 241
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 6/242 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+++L E GGLR+DGRR HELR + +L +DGSA + G T LA V+GPR R +
Sbjct: 3 VEILNE--GGLRSDGRRQHELRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLR 60
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S+ +H +I+ +A FS GER+ R +GDR+T E++ ++ A+ + ++PRSQID
Sbjct: 61 SLTLHDRAVIDVTVIVAPFSQGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQID 120
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I + VL DGG AC+NA TLAL++AG+PM +YV A S + + L+D++ LEET
Sbjct: 121 ICIHVLHQDGGVLQACINATTLALMNAGVPMYDYVCAVSTGVFSTSALLDLTSLEET-DV 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH---LIKV 237
P+LTV LP S KV ++ + +LH++ + A++ A +H + +A+++ L+K
Sbjct: 180 PHLTVGVLPRSRKVTLLSMDTRLHVERFEEIFRLAVEAAAVLHEEMRSAVRETTSGLVKA 239
Query: 238 AG 239
G
Sbjct: 240 MG 241
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 144/239 (60%), Gaps = 4/239 (1%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR ELR++ L +DGSA I G T+VL +V+GPR + +S +H
Sbjct: 11 GGYRSDGRRQFELREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQTIHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN ++A FS GER+ R RGD++ EI+ L+ + + ++PRSQID++V VLQ
Sbjct: 71 NINVDVNVAAFSAGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVYVTVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG C+N TLALI+AGIPM ++V A + + +PL+D++ LEE P++TVA +
Sbjct: 131 DGGLLQTCINGTTLALINAGIPMLDFVCAVTGGVHSTSPLLDLTTLEEN-DVPHVTVAIM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI---KQHLIKVAGARGLG 244
P +GKVA++ + +LH+D + A + +H + +A+ L+ G++G G
Sbjct: 190 PKTGKVALVTMETRLHVDRFEEIFRLAGEAGKVLHREMKSAVMGRTSALVDAMGSQGTG 248
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 143/221 (64%), Gaps = 3/221 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELR++ +G+F +DGSAY +QG+TKV+A V GP+ K+ G V+
Sbjct: 9 GLREDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKAGDA-GKVV 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+F+ MA FST +R+ R DRK +E+ ++ +AIM++++PRSQI+I V+VLQAD
Sbjct: 68 CDFE--MAAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQAD 125
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG +NA TLAL+DAG+ M ++V AC+AS+ T ++DI+H E + GP LT+A LP
Sbjct: 126 GGVLAVAINAVTLALMDAGVAMTDFVCACTASVIDGTNVLDINHYEASAQGPELTIAVLP 185
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
S + + E+ ++H D + D A+ G + +L A+
Sbjct: 186 SSSTIVMAEMKSRVHGDLYAGLQDLAIVGGTTLLPLLKKAV 226
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 149/226 (65%), Gaps = 2/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELR+I +G+F ++DGSAY EQGNTK++AAVYGPR + V +
Sbjct: 11 GLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAV 70
Query: 70 INFQYSMAVFSTGERK--TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ ++S + FST ERK + +GDR T+EI+ ++QA + I + ++PRSQI+I+++VLQ
Sbjct: 71 VKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
+DGG A +NA+TLALIDAGI M++++ ACS S ++D++++EE GGP+ ++
Sbjct: 131 SDGGLKAAAINASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEERSGGPDCLLSI 190
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P G V + + K+ D VL+ KGC I +IL +K++
Sbjct: 191 QPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDYVKKY 236
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 1/222 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR HELR L V Q+DGSA + QG T+VL V+GPR R+ + ++H
Sbjct: 31 GGYRSDGRRQHELRDFNIDLAVRGQADGSAMVSQGLTQVLVTVFGPREARSPTQRIHNRA 90
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN + ++A FST ER+ R R D++ E + ++ I + ++PRS+IDIFV+VLQ
Sbjct: 91 FINVEVNIASFSTSERRKRSRNDKRVLEFAAAIKSTFEPVIQTHLYPRSEIDIFVQVLQQ 150
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A +NA TLALI GI + +YV A SA + PL+D++ LEE P+LT A +
Sbjct: 151 DGGLLSASINATTLALITGGISLYDYVCAVSAGVHATHPLLDLNTLEEN-DVPHLTTAVM 209
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
P + KV ++ L +LH D + A +H + AI
Sbjct: 210 PRTRKVTLVTLETRLHADRFEEIFRLACDAGEVVHKEMRRAI 251
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 144/233 (61%), Gaps = 1/233 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ HELR+IR +GV +DGSAYIE GN K++AAVYGPR + K ++ + +
Sbjct: 15 GKRIDGRKKHELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIHPKHLQRPETAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS + A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIHGALQPALILEMFPRTVIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D + E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDPNKEEDNYGEADVPVAVMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+ + ++++ L + + A+KG ++ A+K+ +K++G G
Sbjct: 194 MKNDITLLQMDGYLTKEEFLEAVRLAMKGAKAVYQKQREALKEKYLKISGEVG 246
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R+DGR+ +E RK+ ++GV +DGSAYIE G K+LA V+GPR V K + + +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS ERK P R+ EIS L++A+ A++ E PR+ ID+++EVLQAD
Sbjct: 75 LRVRYHMEPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA ++AA++AL DAGIPMR+ V +C+A A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALDAASVALADAGIPMRDMVCSCAAGKAADTLILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GK+ +++L L D + ++ ++GC ++ I A+++
Sbjct: 194 NFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 143/235 (60%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ IDIF+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
L + ++++ L D + A+KG ++ A+K+ +K+A G G
Sbjct: 194 LKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVGGG 248
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 143/223 (64%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R+DGR+ +E RK+ ++GV +DGSAYIE G K+LA V+GPR V K + + +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS ERK P R+ EIS L++A+ A++ E PR+ ID+++EVLQAD
Sbjct: 75 LRVRYHMEPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG+ CA ++AA++AL DAGIPMR+ V +C+A A D ++D+++ E+ G ++ + +P
Sbjct: 134 GGSRCAALDAASVALADAGIPMRDMVCSCAAGKAADALILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GK+ +++L L D + ++ L+GC ++ I A+++
Sbjct: 194 NLGKITLLQLDGVLTTDEFKKCIELGLEGCKQVYEIQKNALRE 236
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 147/224 (65%), Gaps = 1/224 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR +ELR ++ + GV ++DGS+YIE G+ K+LAAVYGPR + IK +I
Sbjct: 11 VRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDRAII 70
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR++ EIS +A++ +I+ E PRS IDIF+EVL+ADG
Sbjct: 71 RCRYNMAPFSVEERK-RPGPDRRSIEISKITAEALAPSIILEKFPRSSIDIFIEVLEADG 129
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL DAGIP+R+ VVACSA ++D++ E+ G ++ VA +P
Sbjct: 130 GTRCAGITAASVALADAGIPLRDLVVACSAGKVNGHVVLDLTEEEDKEGEADVPVAIMPR 189
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+ ++ ++++ +L + L + +D A++GC I+ + +I++ +
Sbjct: 190 TKEITLLQVDGELTPEELEKAIDLAIEGCMSINKLQKKSIERKI 233
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 148/232 (63%), Gaps = 3/232 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+RK+ CR+G+ ++DGS ++E GNT VLA VYGPR + ++ +
Sbjct: 11 GLRTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSRQ---SSCGI 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +YSMA F++ +R+ R DR + E++ +++ +++++ P+S++DIF++VLQAD
Sbjct: 68 IRCEYSMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NA T+A+++AGIPM++ +V+CSA +T ++D++H+E GP LT+A
Sbjct: 128 GSERSAAINAVTIAMVNAGIPMKDLIVSCSAGYMENTTVMDLNHVEMITRGPQLTLAIYA 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
+ ++A L K + ++ A KGC + ++ ++I+++ + + +R
Sbjct: 188 STERMATAHLESKASFEIFENLIAIAKKGCLQMFDVMHSSIERYSLNLIASR 239
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR +R G+ ++DGS+Y+E G K+L AVYGPR + + ++ +I
Sbjct: 7 VREDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 66
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR++ EIS +A+ A++ E PRS ID+F+EVL+A+G
Sbjct: 67 RCRYNMAPFSVEERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 125
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL DAGIPMR+ VVAC+A D ++D+S E+ G ++ VA LP
Sbjct: 126 GTRCAGITAASVALADAGIPMRDMVVACAAGKVNDQVVLDLSEEEDKAGQADVPVAILPR 185
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ ++ +++ L D R LD A++GC IH + A+++
Sbjct: 186 TREITLLQSDGNLSDDEFERALDLAVEGCLRIHEVQKEALRKR 228
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 142/229 (62%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR +ELRKI +GV +DGSAYIE G K+LAAVYGPR + K ++ + +
Sbjct: 15 GRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAV 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 140/222 (63%), Gaps = 1/222 (0%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ELR ++ GV ++DGSAY+E G KVLAAVYGPR + + I + ++
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLR 78
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y+MA FS +RK RP DR++ EIS +A++ A+ E PRS ID+F+EVL+A+GG
Sbjct: 79 CKYNMAPFSVDDRK-RPGPDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGG 137
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
CA + AA++AL DAG+PMR+ VVAC+A + ++D+S +E+ G +L +A +P +
Sbjct: 138 TRCAGITAASVALADAGVPMRDIVVACAAGKSNGQVVMDLSEVEDKEGEADLPIAMMPRT 197
Query: 192 GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
G++ ++++ L + + LD A++GC I AIK
Sbjct: 198 GEITLLQMDGHLTGEEFEKALDLAVEGCKRISEEQKKAIKNR 239
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 142/223 (63%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R+DGR+ +E RK+ ++GV +DGSAYIE G K+LA V+GPR V K + + +
Sbjct: 15 GIRSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FS ERK P R+ EIS L++A+ A++ E PR+ ID+++EVLQAD
Sbjct: 75 LRVRYHMAPFSVSERKN-PAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA ++AA++AL DAGIPMR+ V +C+A D ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALDAASVALADAGIPMRDMVCSCAAGKVADALILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GK+ +++L L D + ++ ++GC ++ I A+++
Sbjct: 194 NFGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKNALRE 236
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 1/222 (0%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ELR ++ GV ++DGSAY+E G+ KVLAAVYGPR + + + ++
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y+MA FS +RK RP DR++ EIS +A++ A+ E PRS IDIF+EV+QA+GG
Sbjct: 86 CRYNMAPFSVDDRK-RPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGG 144
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
CA + AA++AL DAGIPMR+ V AC+A A ++D+S E+ G +L +A +P +
Sbjct: 145 TRCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEWEDKEGEADLPIAMMPRT 204
Query: 192 GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
G + ++++ L D + LD A+KGC I AIK
Sbjct: 205 GDITLLQMDGHLTDDEFEKALDLAIKGCKIISEEQKKAIKNR 246
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 146/241 (60%), Gaps = 5/241 (2%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R+DGRR +ELR + L ++DGSA I G T+VL +V+GPR + +S H
Sbjct: 14 AGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRA 73
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN + ++A FSTGER+ R +GD++ E + ++ + + ++PRSQIDI++++LQ
Sbjct: 74 NINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQ 133
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG C+N TLALI+AGIPM ++V A S + +P++D++ LEE P++TVA +
Sbjct: 134 DGGTLQTCINGTTLALINAGIPMSDFVCAISGGVHSTSPMLDLTTLEEN-DVPHVTVAVM 192
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI---KQHLIKVAGARGLGR 245
P S KV ++ + +LH++ VL A A +H + A+ + LIK+ G +G+
Sbjct: 193 PKSKKVVLVTMETRLHVERFEEVLCLARDAAAVLHKEMKEAVLGRSEGLIKM-GEVAIGQ 251
Query: 246 K 246
K
Sbjct: 252 K 252
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 141/223 (63%), Gaps = 1/223 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR ++ G+ ++DGS+Y+E G K+L AVYGPR + + ++ +I
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR++ EIS +A+ A++ E PRS ID+F+EVL+A+G
Sbjct: 76 RCRYNMAPFSVEERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL DAGIPMR+ VVAC+A GD ++D+S E+ G ++ VA LP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ ++ +++ L + R LD A++GC IH + A+++
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKR 237
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 139/231 (60%), Gaps = 8/231 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK----- 63
GLR DGRR E R++R RLGVF ++DGSAYIEQGNTKVL VYGPR V ++K
Sbjct: 16 AGLRLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGA 75
Query: 64 --VHGSVLINFQYSMAVFSTGERK-TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +++ + + A F+T +RK +R DRK E+S ++Q + I + ++P+SQI
Sbjct: 76 ASLVKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQIS 135
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I+ +VLQADGG A +NA +LAL+DAGI + ++VVA +A L D++ E+ G
Sbjct: 136 IYPQVLQADGGELAASINATSLALMDAGIALNDFVVASTAGFVQQKSLCDLNAFEQAARG 195
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P +TVA P S V +++ KL L+ V+ A+ GC I L ++
Sbjct: 196 PQITVAINPRSRHVNYLKMEAKLALEVFESVMGMAINGCDRIGDSLQQVVR 246
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 142/229 (62%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELRKI +GV +DGSAYIE G K+LAAVYGPR + K ++ + +
Sbjct: 14 GRRIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ +D+F+EVLQAD
Sbjct: 74 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 133 AGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 193 LKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 241
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 158/234 (67%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+I C+L V S +DGSA E GNTKVLAAV+GP V +S L
Sbjct: 8 GLRLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSMA FSTGER+ R +GDR+++E+S+ +R + A+++E+ PRSQID++V+VLQAD
Sbjct: 68 VVCEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA +NAA LAL AG+P+R+ V C+A T L+D+++ E++ GGP+L VA P
Sbjct: 128 GGTRCAAINAAVLALAAAGVPLRDLVAGCAAGYLDGTALLDLNYTEDSGGGPDLCVALAP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
+ ++++ +L +D V++ A +GC I ++ A+ +H ++A ARG+
Sbjct: 188 RLDSLYLVQMDNRLPVDTFQAVMELAREGCRTISGVMRAALLEHTQRLAVARGI 241
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 1/225 (0%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G LR+DGRR ELR L +DGSA + G T+V A VYGPR +N++ +H
Sbjct: 9 AGNLRSDGRRPLELRSFSAELTTHPSADGSASVSHGLTQVTACVYGPREAKNRAQTMHDR 68
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N + +A ++ R+ R +GDR+T+E + ++ I + ++PRS+IDI + VLQ
Sbjct: 69 ALVNIEVEVAPWAGEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYPRSEIDIHIHVLQ 128
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG A +NA TLAL+DAGIPM +YV + SA L T ++D+++LEE+ P++TVA
Sbjct: 129 LDGGLLQAGINATTLALVDAGIPMLDYVSSLSAGLYHTTAMLDLTNLEES-DLPSVTVAV 187
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
LP SGKV ++ + +LH+D + A++G + +D +++
Sbjct: 188 LPRSGKVTLVSMETRLHVDRFEEMFKLAMEGGKVLRGEMDKVVRE 232
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 141/227 (62%), Gaps = 1/227 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR ++LR I+ +GV ++DGSAYIE G K++AAVYGP K ++
Sbjct: 13 NGLRIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQEADRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FS ERK RP DR++ E+S + +A+++ I E +PR+ ID+++EVLQA
Sbjct: 73 IVRARYSMAPFSVDERK-RPGPDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + A+LAL DAGIPMR+ +V C+A D ++D++ E+ G ++ +A L
Sbjct: 132 DAGTRVAGITVASLALADAGIPMRDLIVGCAAGKVDDVVVLDLNKEEDNYGQADVPMAIL 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
P +G++A++++ L + L ++ A+ IH + A+K+ I
Sbjct: 192 PRTGEIALLQMDGDLTYEELTTAMEMAMDAAKKIHEMQVEALKRKYI 238
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 137/222 (61%), Gaps = 1/222 (0%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ELR ++ GV ++DGS+Y+E G+ KVLAAVYGPR + + + ++
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y+MA FS +RK RP DR++ EIS +A++ A+ E PRS IDIF+EVLQA+GG
Sbjct: 86 CRYNMAPFSVDDRK-RPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGG 144
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
CA + AA++AL DAGIPMR+ V AC+A A ++D+S E+ G +L +A +P +
Sbjct: 145 TRCAGITAASVALADAGIPMRDMVSACAAGKADGQVIMDLSEGEDKEGEADLPIAMMPRT 204
Query: 192 GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
G + ++++ L D + LD A+KGC I AIK
Sbjct: 205 GDITLLQMDGHLTSDEFEKALDLAVKGCKIISEEQKNAIKNR 246
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GKRLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIHPKHLQKPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPAVILELFPRTSIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 194 IKNDITLLQMDGYLTKEEFLEAVRLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAYIE G K+LAAVYGPR + K ++ +
Sbjct: 14 GRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAI 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ AI+ E+ PR+ ID+F+EVLQAD
Sbjct: 74 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPM++ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 133 AGTRVAGITAASLALADAGIPMKDLVSACAAGKIEGQIVLDLNKEEDNYGEADVPVAIMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++++ L + + A+KG ++ A+K+ IK+A
Sbjct: 193 IKNDITLLQMDGYLTREEFLEAVRLAIKGAKAVYQKQREALKEKYIKIA 241
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 141/228 (61%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELRKI+ +GV +DGSAY+E G K++AAVYGPR + K ++ +
Sbjct: 14 GYRVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAI 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ IDIF+EVLQAD
Sbjct: 74 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPM++ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 133 AGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ + ++++ L + + A+KG ++ A+++ +K+
Sbjct: 193 IKNDITLLQMDGYLTKEEFLEAVKLAIKGAKAVYQKQREALREKYLKI 240
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 142/235 (60%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GKRVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTSIDLFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKDEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
L + ++++ L D + A+KG ++ A+K +K+A G G
Sbjct: 194 LKNDITLLQMDGYLTKDEFVEAVRLAIKGAKAVYQKQREALKVKYLKIAEEVGGG 248
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 142/235 (60%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
L + ++++ L D + A+KG ++ A+K +K+A G G
Sbjct: 194 LKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKVKYLKIAEEVGGG 248
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 142/230 (61%), Gaps = 1/230 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR+ +ELR I+ ++GV ++GSAYIE G K++AAVYGPR + K ++
Sbjct: 14 NGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIHPKHLQRPDRA 73
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ IDIF+EVLQA
Sbjct: 74 ILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDIFIEVLQA 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +
Sbjct: 133 DAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIM 192
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
PL + ++++ L + + A+KG ++ A+K+ IK+A
Sbjct: 193 PLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYIKIA 242
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 142/229 (62%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ ++GV ++GSAYIE G K++AAVYGPR + K ++ +
Sbjct: 15 GRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V ACSA ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 194 IKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G KVLAAVYGPR + K ++ +
Sbjct: 15 GKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ + PR+ ID+F+E+LQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPM++ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L D + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 141/229 (61%), Gaps = 3/229 (1%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
TE G R D R ELRK++ GV ++DGSAY+E G KVLAAVYGPR + + +
Sbjct: 14 TETSG--RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQ 71
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++ +Y+MA FS +RK RP DR++ EIS QA++ A+ E PRS ID+F+E
Sbjct: 72 PNKAVLRCKYNMAPFSVDDRK-RPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIE 130
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
V++A+GG CA + AA++AL DAGIPMR+ VVAC+A + ++D+S +E+ G ++
Sbjct: 131 VIEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKSDGKVILDLSEVEDKEGQADVP 190
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+A +P +G++ ++++ L + + LD A+ GC I AIK
Sbjct: 191 IAIMPRTGEITLLQMDGNLTEEEFEQALDLAINGCKIISEKQKAAIKNR 239
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV ++GSAYIE G K++AAVYGPR + K ++ +
Sbjct: 15 GRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L D + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 143/230 (62%), Gaps = 1/230 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR+ +ELR I+ ++GV ++GSAYIE G K++AAVYGPR + +K ++
Sbjct: 14 NGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRA 73
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ ID+F+EVLQA
Sbjct: 74 ILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQA 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +
Sbjct: 133 DAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIM 192
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
PL + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 193 PLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIA 242
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 2/222 (0%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L+ + GLR DGRR ELR I+ +GV ++DGS YIE G+ KV+AAVYGPR V + ++
Sbjct: 5 LSFFKDGLRLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQ 64
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
++ ++Y+MA FS ERK RP DR++ E+S R+A+++ I++ PRS +DIFV
Sbjct: 65 EVTRAIVRYRYNMASFSVEERK-RPGPDRRSYEVSKVSREALASVILTSYFPRSVVDIFV 123
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
EVLQAD G A +NAA++AL DAGIPM+ + +C+A ++D E+ G ++
Sbjct: 124 EVLQADAGTRTAGINAASVALADAGIPMKGLISSCAAGKVDGEIVLDPMKAEDNFGEADV 183
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
+A P G++ ++++ +L D R L+ A GC I+ +
Sbjct: 184 PIAMTP-GGEITLLQMDGRLSRDEFRRALELAKVGCQQIYEV 224
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ +ELR I+ GV ++DGSAY+E G K+L AVYGPR + + + +I
Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS +RK RP DR++SEIS A+ A+M E +PRS +DI++EV++A+G
Sbjct: 66 RCRYNMAPFSVDDRK-RPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEG 124
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL+DAGIPM++ VV C+A D ++D+S +E+ G ++ +A +P
Sbjct: 125 GTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDEIILDLSEVEDKEGQADVPIAMMPR 184
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+G++ +++ L + ++ A++GC ++ I A+
Sbjct: 185 TGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEAL 224
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ +ELR I+ GV ++DGSAY+E G K+L AVYGPR + + + +I
Sbjct: 6 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 65
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS +RK RP DR++SEIS A+ A+M E +PRS +DI++EV++A+G
Sbjct: 66 RCRYNMAPFSVDDRK-RPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEG 124
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL+DAGIPM++ VV C+A D ++D+S +E+ G ++ +A +P
Sbjct: 125 GTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPR 184
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+G++ +++ L + ++ A++GC ++ I A+
Sbjct: 185 TGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEAL 224
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ +ELR I+ GV ++DGSAY+E G K+L AVYGPR + + + +I
Sbjct: 5 IREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPRESYIRRLLEPNTGVI 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS +RK RP DR++SEIS A+ A+M E +PRS +DI++EV++A+G
Sbjct: 65 RCRYNMAPFSVDDRK-RPGPDRRSSEISKITADALRPALMLENYPRSMVDIYIEVIEAEG 123
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL+DAGIPM++ VV C+A D ++D+S +E+ G ++ +A +P
Sbjct: 124 GTRCAGITAASVALVDAGIPMKDIVVGCAAGKVNDKIVLDLSEVEDKEGQADVPIAMMPR 183
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+G++ +++ L + ++ A++GC ++ I A+
Sbjct: 184 TGEITLLQSDGDLSQEEFEEAINLAMEGCRKVNEIQKEAL 223
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLRNDGRR E+R +CR+G+ +GSA+IE GNTKVL V GP KS
Sbjct: 11 GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N + ++A FST + K R + DR+ L L+ I +E++PRSQI +++ VLQ D
Sbjct: 71 VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G +C+NA TLALIDAGIP++++V +A + L+D++ LEE+ LTVA L
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES-ALSWLTVAVLG 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
KV M+L +HLD+L V++ A+ G I+ + +A++Q
Sbjct: 190 NIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLRNDGRR E+R +CR G+ +GSA+IE GNTKVL V GP KS
Sbjct: 11 GLRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N + ++A FST + K R + DR+ L L+ I +E++PRSQI +++ VLQ D
Sbjct: 71 VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G +C+NA TLALIDAGIP++++V +A + L+D++ LEE+ LTVA L
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES-ALSWLTVAVLG 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
KV M+L +HLD+L V++ A+ G I+ + +A++Q
Sbjct: 190 NIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 139/228 (60%), Gaps = 1/228 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR ++LR I+ +GV ++DGSA+IE G K++AAVYGP K ++
Sbjct: 13 NGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FS ERK RP DR+ E+S + +A+ + I E +PR+ ID+++EVLQA
Sbjct: 73 IVRARYSMAPFSVDERK-RPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + A+LAL DAGIPMR+ +V C+A D ++D++ E+ G ++ +A +
Sbjct: 132 DAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIM 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
P + ++A++++ + + L +D A+ IH + A+K+ I+
Sbjct: 192 PRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIE 239
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 139/228 (60%), Gaps = 1/228 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR ++LR I+ +GV ++DGSA+IE G K++AAVYGP K ++
Sbjct: 11 NGLRIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +YSMA FS ERK RP DR+ E+S + +A+ + I E +PR+ ID+++EVLQA
Sbjct: 71 IVRARYSMAPFSVDERK-RPGPDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQA 129
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + A+LAL DAGIPMR+ +V C+A D ++D++ E+ G ++ +A +
Sbjct: 130 DAGTRVAGITVASLALADAGIPMRDLIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
P + ++A++++ + + L +D A+ IH + A+K+ I+
Sbjct: 190 PRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQVEALKRKYIE 237
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR +R LGV ++GSA +E GNTK LAAVYGPR K I + +
Sbjct: 11 GLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ + + + PR+ ID+F+E+LQAD
Sbjct: 71 LRVRYHMAPFSTTERKS-PAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG + AA+LAL DAGIPMR+ V+ + ++DI+ LE+ G +L V +P
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDKYGEADLPVGIMP 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+G++ +++L+ L + LD A KG I+ A+ + K+
Sbjct: 190 NTGEIVLLQLNGVLTPGEFKQALDMAYKGVEQIYKTAKEAMYRKYYKI 237
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 140/230 (60%), Gaps = 1/230 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR+ +ELR I+ +GV +DGSAYIE G K++AAVYGP+ + K ++
Sbjct: 14 NGRRIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRA 73
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ ID+F+EVLQA
Sbjct: 74 ILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQA 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +
Sbjct: 133 DAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIM 192
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
PL + ++++ L + + A+KG ++ A+K +K+A
Sbjct: 193 PLRNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKDKYLKIA 242
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 139/231 (60%), Gaps = 4/231 (1%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR ELR I+ GV +++DGS Y+E G KV+AAVYGPR V K ++
Sbjct: 9 NGKRLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKA 68
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I ++YSMA FS ERK RP DR++ EIS R+A+ IM E+ PRS IDIFVEVLQA
Sbjct: 69 IIRYRYSMAPFSVEERK-RPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQA 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G+ AC+NAA++ALIDAGIPM+ V + + + ++D E+ G ++ A L
Sbjct: 128 DAGSRTACLNAASVALIDAGIPMKGMVTSVAVAKVDGILVLDPMKEEDNYGEADIPFAFL 187
Query: 189 PLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+GK+ + L Q ++ + L + L+ A KG I+ + AI + IK
Sbjct: 188 IRNGKIESITLLQMDGRVSKEELKKALEMAKKGAMQIYQLQREAILKKYIK 238
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 142/231 (61%), Gaps = 1/231 (0%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
DL+ G+R DGR+ +E RK+ + GV +DGSAYIE G K+LA V+GPR V K
Sbjct: 7 DLVLLDENGIRCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKH 66
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ + ++ +Y M FS ERK P R+ EIS +++A+ A++ E PR+ ID+
Sbjct: 67 LSNPDTGILRVRYHMEPFSVDERKN-PAPSRREIEISKVVKEALEPAVILEKFPRTVIDV 125
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP 181
F+EVLQADGG CA ++AA++AL DAGIPMR+ V AC+A DT ++D+++ E+ G
Sbjct: 126 FLEVLQADGGTRCAALDAASVALADAGIPMRDMVCACAAGKVADTLIIDVNNEEDQAGQA 185
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ V +P GKV +++L L + + ++ ++G ++ I A+++
Sbjct: 186 DMPVGYMPNLGKVTLLQLDGVLTPEEFKKCVELGIEGSKQVYEIQKQALRE 236
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 138/225 (61%), Gaps = 2/225 (0%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
MD G+R DGRR ELR I+ +GV ++DGS Y+E G+ KV+AAVYGPR V +
Sbjct: 1 MDERVFIKDGIRLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPR 60
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
++ +I ++Y+MA FS ER+ RP DR++ E+S R+A+ I++ P+S ID
Sbjct: 61 HLQEVNRAIIRYRYNMASFSVEERR-RPGPDRRSYELSKVSREALEPVILTSYFPKSVID 119
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IFVEVLQAD G A +NAA++AL DAGIPMR V +C+A ++D E+ G
Sbjct: 120 IFVEVLQADAGTRTAGINAASVALADAGIPMRSLVSSCAAGKVDGQIVLDPMKDEDNFGQ 179
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
++ +A P +G++ ++++ L D + ++ A KGC +I+ I
Sbjct: 180 ADMPIAITP-TGEITLLQMDGILTRDEFRQAMELAKKGCQEIYKI 223
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 135/228 (59%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR +R LGV ++GSA +E GNTK LAAVYGPR K I + +
Sbjct: 11 GLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ + + + PR+ ID+F+E+LQAD
Sbjct: 71 LRVRYHMAPFSTTERKS-PAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG + AA+LAL DAGIPMR+ V+ + ++DI+ LE+ G +L V +P
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDEYGEADLPVGIMP 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+G++ +++L+ L + LD A KG I+ A+ + K+
Sbjct: 190 NTGEIVLLQLNGVLTSGEFKQALDMAYKGVEQIYKTAKEAMYRKYYKM 237
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 138/221 (62%), Gaps = 2/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR +ELR IR + GV ++DGS Y+E G KV+AAVYGPR V + ++ +
Sbjct: 11 GKRLDGRGLNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS ERK RP DR++ EIS R+A+ + IM E++PRS IDIFVE+LQAD
Sbjct: 71 VRYRYNMAAFSVEERK-RPGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPMR V AC+ ++D++ E+ G +L V A+
Sbjct: 130 AGTRVAGINAASVALADAGIPMRCLVSACAVGKVDGELVLDLNKDEDNYGQADLPV-AMN 188
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
G++ + ++ + + R LD A++GC +H + A+
Sbjct: 189 QFGEITLCQMDGHMTEEEFGRALDMAIEGCKKLHQMQRQAL 229
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 139/223 (62%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ E+R ++ + GV ++DGSAY+E G K++AAVYGPR + + + +
Sbjct: 13 GLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+Y+MA FS ERK RP DR++ EIS ++A+ AI +E +PR+ IDIFVEVLQAD
Sbjct: 73 VRFRYNMAPFSVDERK-RPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G CA ++AA++AL DAGI MR+ V AC+A ++D + E+ G ++ +A +P
Sbjct: 132 AGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GK+ ++++ + + + A KGC ++ A+K+
Sbjct: 192 KEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 1/223 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR +ELR I L +DGS I QG T VL +V+GP R +S +H
Sbjct: 11 GGFRSDGRRQYELRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEARVRSQTLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N + +++ FS GER+ R R D++ E++ +R I + ++PRSQID+FV+V+Q
Sbjct: 71 NLNVEVNVSAFSAGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRSQIDVFVQVIQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG C+N TLAL AGIP+ ++V A + + +P++D++ LEE PN TVA +
Sbjct: 131 DGGLLQTCINGTTLALAHAGIPLFDFVCAVTGGVHSSSPMLDLTTLEEN-DIPNFTVAIM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P S +V ++ + +LH+D + A+ IH + A++
Sbjct: 190 PKSNRVTLVAMETRLHIDRFEELFLLAVDAGNIIHKEMKIALQ 232
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 139/233 (59%), Gaps = 1/233 (0%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
TE G +R+DGR ELR IR +GV S +DGSAY+E G T+V+AAVYGPR V K + +
Sbjct: 14 TEEGRIVRHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMAL 73
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
LI +Y MA FST ERK+ P R+ E+S +R+A+ + +E++PR+ IDIF+E
Sbjct: 74 PDRALIRCRYHMAPFSTDERKS-PAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIE 132
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
V++ADGG A V AA+LAL DAG+ MR+ V + ++DI LE+ G ++
Sbjct: 133 VIEADGGTRTAAVTAASLALADAGVQMRDLVAGVAVGKVQGVLVLDIDQLEDEYGEADMP 192
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
VA P G V +++L+ L + + A KG I+ + A+++ +V
Sbjct: 193 VAMAPSLGWVTLLQLNGVLSREEFKEAMALARKGIEAIYKMQREALRRKYAEV 245
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 142/231 (61%), Gaps = 4/231 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR I+ V ++DGS Y+E G KV+AAV+GPR V + ++ +
Sbjct: 15 GLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS ERK RP DR++ EIS ++A A IM E+ PRS IDIFVEVLQAD
Sbjct: 75 IRYRYNMAPFSVEERK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ AC+NAA++AL+DAG+PM+ + + + A ++D E+ G ++ A L
Sbjct: 134 AGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLI 193
Query: 190 LSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+GK +A++++ ++ D + + ++ A KG I+ + AI + I+V
Sbjct: 194 RNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEV 244
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 104/126 (82%), Gaps = 3/126 (2%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
M+LL++ G R DGR+ +ELR+I+CR+GVFSQ+DGSAYIEQGNTKVLAAVYGP VR +
Sbjct: 4 MELLSD--QGFRVDGRKPNELRRIQCRMGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
KS +H LIN QYSMAVFSTGER+ RPRGD+K+ E++L L+Q AAI++ ++PRSQI
Sbjct: 62 KSKAIHDQALINCQYSMAVFSTGERRRRPRGDKKSVEMTLHLKQTFEAAILTHLYPRSQI 121
Query: 120 DIFVEV 125
DIF+EV
Sbjct: 122 DIFIEV 127
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 140/221 (63%), Gaps = 2/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR +LR I+ + GV ++DGS Y+E G KV+AAVYGPR V + ++ + +
Sbjct: 11 GKRLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS ERK RP DR++ EIS R+A+ + I+ E++PRS IDIFVE+LQAD
Sbjct: 71 VRYRYNMASFSVEERK-RPGPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPM+ V AC+ A DT ++D++ E+ G +L + A+
Sbjct: 130 AGTRVAGINAASVALADAGIPMKCLVSACAVGKADDTLVLDLNKDEDNYGQADLPI-AMN 188
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
G++ + ++ + D L+ A++GC +H + A+
Sbjct: 189 QFGEITLCQMDGHMTSDEFSTALNMAIEGCKKLHELQKQAL 229
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 142/231 (61%), Gaps = 4/231 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR I+ V ++DGS Y+E G KV+AAV+GPR V + ++ +
Sbjct: 15 GLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS ERK RP DR++ EIS ++A A IM E+ PRS IDIFVEVLQAD
Sbjct: 75 IRYRYNMAPFSVEERK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ AC+NAA++AL+DAG+PM+ + + + A ++D E+ G ++ A L
Sbjct: 134 AGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLI 193
Query: 190 LSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+GK +A++++ ++ D + + ++ A KG I+ + AI + I+V
Sbjct: 194 RNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEV 244
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 149/254 (58%), Gaps = 17/254 (6%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR +ELR I+ + GV ++DGS Y+E G KV+AAVYGPR V + ++ +
Sbjct: 11 GKRLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS ERK RP DR++ EIS R+A+ + ++ E++PRS +DIFVE+LQAD
Sbjct: 71 VRYRYNMAAFSVEERK-RPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPMR V ACS ++D++ E+ G +L VA
Sbjct: 130 AGTRVAGINAASVALADAGIPMRCLVSACSVGKIDGEVVLDLNKDEDNYGQADLPVAVNQ 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQL 249
G+V + ++ L + + LD A+ GC +H + KQ L++ +
Sbjct: 190 F-GEVTLCQMDGHLTEEEFGKALDMAVDGCKKLHEMQ----KQALVE-----------KY 233
Query: 250 GQLTGKKKEEESKS 263
G + + EEE+K+
Sbjct: 234 GTMVAQPAEEEAKA 247
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 145/251 (57%), Gaps = 3/251 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGRR ELR I L +DGSA I G T+VL +V+GPR + +S H +
Sbjct: 12 GYRSDGRRQFELRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQTFHDRAV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N + ++A FSTGER+ R RGD++ E + ++ + + ++PRSQIDI+V VLQ D
Sbjct: 72 LNVEVNIAPFSTGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIYVHVLQQD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A +NA TLAL+ AGIP+ + V A + + +P++D++ LEE P+LTVA +P
Sbjct: 132 GGLLQAGINATTLALVSAGIPLLDLVCAVTGGVHSTSPMLDLTTLEEN-DIPHLTVAIMP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQL 249
+GK+ ++ + +LH D + A + IH + ++ ++ A LG +
Sbjct: 191 KTGKITLVTMETRLHADRFADIFKLACEAGQVIHKEMKRTVRARTRRLVDAMDLGIRSSA 250
Query: 250 GQLTGKKKEEE 260
G TG+ +++
Sbjct: 251 G--TGENVDKD 259
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 149/234 (63%), Gaps = 1/234 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E R++RC +GV +DGSA GNT+V+ AV+GPR N+ + +
Sbjct: 8 GLRLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAI 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++S A FSTGER+ R +GDR++ E++L +RQA+ A ++ + PRS+I++ ++VLQAD
Sbjct: 68 IKCEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A +NAA LA+ +AGIPM++ + ACSA TPL+D++++EE GG + VA
Sbjct: 128 GGVRAAAINAAVLAIANAGIPMKDTMAACSAGYLDGTPLLDLNYVEEGGGGVRVHVATHA 187
Query: 190 LSG-KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
G KV V++ K ++ V A++GCA + ++ A+ +H +A RG
Sbjct: 188 SRGDKVVVVQTDNKASVEVFEPVHALAVEGCAVVQKVMREAMIEHTSILATLRG 241
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 170 bits (430), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 1/224 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR +ELR I L +DGSA + G T+VLA V+GPR R +S +H
Sbjct: 25 GGYRSDGRRQYELRDITIDLSQQGTADGSALMTHGLTQVLATVFGPREARVRSQTLHDRA 84
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+IN + +++ FSTGER+ R R DR+ E++ ++ + + ++PRSQIDIF+ VLQ
Sbjct: 85 VINVEVNVSPFSTGERRRRGRADRRVLELAATIKSTFEPVVQTNLYPRSQIDIFLHVLQQ 144
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NA TLAL+ AGIP+ ++V A S + +P++D++ LEE PNLTVA +
Sbjct: 145 DGGLLHACINATTLALVTAGIPLLDFVCAVSGGVHSTSPMLDLTTLEEN-DLPNLTVAIM 203
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P + KV ++ L +LH+D + + A IH + A+K+
Sbjct: 204 PKTKKVTLVTLDTRLHVDRFAEIFELACVAGQIIHKEMKHAVKE 247
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR+DGRR ELR I+ +GV +DGSAY+E G TK++AAVYGPR V + + + L
Sbjct: 11 GLRHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRAL 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y MA FST +RK+ P R+ E+S +R+A+ + + SE++PR+ ID+F+EVLQAD
Sbjct: 71 IRCRYHMAPFSTSDRKS-PAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG + AA+LAL DAGIPMR+ V +A ++DI +E+ G ++ +
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVAGVAAGKVDGVLVLDIDEVEDEYGEADMPIGYAA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
++ +++L+ ++ L+ A +G I+ I+ + + +KV
Sbjct: 190 GIDEIVLLQLNGVFTVEEFKEALNLAKRGAEQIYKIMKETLHKKYLKV 237
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 2/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R + +GV S++DGS Y+E GN KVLAAVYGPR + + ++ L
Sbjct: 13 GLRLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEAL 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS E + RP R+++EIS +A +M + +P + ID+F EVLQAD
Sbjct: 73 VRYRYNMAAFSV-EDRIRPGPSRRSTEISKVSGEAFETVVMKQFYPGAVIDVFAEVLQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAATLAL+DAGIPM+ V AC+ ++D++ E+ G +L + A+
Sbjct: 132 AGTRTAAINAATLALVDAGIPMKGLVAACAVGKVDGQLVIDLNKPEDNYGDADLPI-AMT 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
G++ ++++ L D + + ++ KGC I AI A+
Sbjct: 191 EDGEITLLQMDGNLTADEIAKGVEMVRKGCEQIFAIQKEAL 231
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR +ELR I+ + GV +++DGSAYIE G K++ VYGP+ K + ++
Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR+T EIS + +A+S++IM E PR++ID+++EVLQAD
Sbjct: 77 KARYNMAAFSVDERK-RPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADA 135
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G A + AAT+AL DAG+PMR+ VV C+A ++D+S E+ G ++ +A +P
Sbjct: 136 GTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPK 195
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
+G + +M++ + D L + +D + I I
Sbjct: 196 TGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQI 230
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 151/232 (65%), Gaps = 1/232 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR ELR++R LGV S +DGSA E GNT+VLAAV+GP+PV +S + ++
Sbjct: 8 LRLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIV 67
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FSTGER+ R + DR+ +EI + +R + I++E+ PRSQIDI+V+VLQADG
Sbjct: 68 KCEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQADG 127
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA-LP 189
G CAC+NAA +A A IPMR+ V +C+A T L+D++++E++ GGP++ VA
Sbjct: 128 GTRCACINAACMAAAAAAIPMRDLVASCAAGYLESTALLDLNYMEDSGGGPDVAVAIHAN 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
+V +++ +L ++ VL+ + GC + A + + QH +A AR
Sbjct: 188 HEDRVVLLQQDNRLSIETFEEVLELGVAGCRAVAAFMRQQLLQHTRALAAAR 239
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 140/225 (62%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ QS DGS+Y+EQGNTKV+ V GP+ NKS +
Sbjct: 11 GLRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I F S+A FST RK R + +++T E++ L + +I+ +++PR+ I + + VL
Sbjct: 71 VIEFNVSIASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A NA+TLALIDAGI M +Y+ SA L +PL+D++ LEE+ G LT+ +
Sbjct: 131 DGGLLAALTNASTLALIDAGISMYDYISGISAGLHDISPLLDLNTLEES-GMSFLTIGVV 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K++++ L K+ LD+L +L A+ G I ++D +++H
Sbjct: 190 GNSEKLSLLLLEDKIPLDNLEDLLAIAIAGSHRIRDLMDQEVRRH 234
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 148/251 (58%), Gaps = 2/251 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E+R ++ +GV S++DGS Y+E GN K+++AVYGPR + + ++ +
Sbjct: 12 NGLRVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I ++Y+MA FS +R+ RP R++SEIS +A +M++ +P + ID+F EVL+A
Sbjct: 72 VIRYKYNMASFSVEDRQ-RPGPSRRSSEISKVSSEAFEPVVMTQFYPNTVIDVFSEVLEA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A +NAATLALIDAGIP++ V AC+ ++D++ E+ G +L V A+
Sbjct: 131 DAGTRTAAINAATLALIDAGIPLKSLVSACAVGKVDGQLVLDLNKKEDNEGEADLPV-AI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQ 248
G++ ++++ L D + + ++ GC I I A+ + + GA +
Sbjct: 190 TQDGEITLLQMDGHLTEDEIKQAMELVKNGCQQIQQIQREALLKKFGQYEGADTEIQSVP 249
Query: 249 LGQLTGKKKEE 259
L + + K++ E
Sbjct: 250 LTETSSKQETE 260
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR +R +GV ++GSA +E GNTK LAAVYGPR K I + +
Sbjct: 12 GLRVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ + + + +PR+ ID+F+E+LQAD
Sbjct: 72 LRVRYHMAPFSTSERKS-PAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQAD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGIPM++ V+ + G ++DI+ LE+ G +L V P
Sbjct: 131 GGTRTAGLTAASLALADAGIPMKDLVIGVAVGKVGGVLVLDINELEDEYGEADLPVGIAP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ ++ +++L+ L + + ++ A KG I+ + A+ + +K+
Sbjct: 191 NTNEIVLLQLNGVLTPEEFKQAMEMAFKGVEQIYKVAKEAMYRKYLKM 238
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 139/222 (62%), Gaps = 2/222 (0%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
++ + GLR DGRR ELR ++ +G+ +++DGS YIE G KV+AAVYGPR V + ++
Sbjct: 9 ISFFKDGLRLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQ 68
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
++ ++Y+MA FS ERK RP DR++ E+S R+A+ I++ PRS ID+FV
Sbjct: 69 EVTRAIVRYRYNMASFSVEERK-RPGPDRRSYELSKVSREALEPVILTSFFPRSVIDVFV 127
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
EVLQAD G A +NAA +AL DAGIPM+ + +C+A GDT ++D E+ G +L
Sbjct: 128 EVLQADAGTRTAGINAAAVALADAGIPMKSMISSCAAGKVGDTIVLDPMKEEDNFGQADL 187
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
+A P +G + +M++ L D + + A+KG DI+ +
Sbjct: 188 PIAMTP-NGDITLMQMDGNLTPDEFGQAVTMAMKGAKDIYEL 228
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ IDIF+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALLLELFPRTAIDIFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPM++ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMKDLVAACAAGKIEGQIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++++ L + + A+KG ++ A+K+ IK+A
Sbjct: 194 MKNDITLLQMDGYLTREEFIEAVKLAIKGAKAVYQKQREALKEKYIKIA 242
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
+R+DGR +LR IR +GV S +DGSA +E G T+V+AAVYGPR + + + +
Sbjct: 23 AIRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAI 82
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y MA FST ERKT P R+ E+S +R+A+ A ++SE++PR+ ID+++EVLQ+D
Sbjct: 83 IRCRYHMAPFSTAERKT-PAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD 141
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGI MR+ V + ++DI +E+ ++ VA P
Sbjct: 142 GGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAP 201
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV +++L+ L D + L+ A KG I+ + A+++ ++V+ G
Sbjct: 202 SLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVEEG 254
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 139/240 (57%), Gaps = 10/240 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGSVL 69
LR DGRR +ELR++ L V S SDGSAY+EQGNTK+LA V GP+ PVR
Sbjct: 13 LRLDGRRWNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQEPVRRTGRDGSSEAK 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I + ++ FS +RK R +G+++ E+ L + +A ++ ++P S +++ + VL D
Sbjct: 73 IEVEVNVTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSAS--------LAGDTPLVDISHLEETLGGP 181
G AC+NAATLALIDAGIPM +Y+ AC+ + + PL+D++ LEE P
Sbjct: 133 GSLLAACLNAATLALIDAGIPMTDYIAACTVASSPSSDQSIDDSDPLLDLNGLEEQ-ELP 191
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
L++A GKV V+ + K+ + L ++ L GC I ILD ++QH +V A+
Sbjct: 192 FLSIATSGEEGKVCVLMMETKVQMARLEAMVSVGLDGCGQIRGILDEVVRQHGKRVLEAK 251
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 142/235 (60%), Gaps = 13/235 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFS-QSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS 67
GLRNDGRR +ELR+I C+L S +DGS+YIEQG TKVL V GP P + +K +
Sbjct: 3 GLRNDGRRWNELRRIHCQLSTSSTNADGSSYIEQGFTKVLCNVTGPAEPSSRQKVK-QDA 61
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + A FS +R R R D+K E+ +++ ++ I++ + RS+I I + +L
Sbjct: 62 ATVTCEVYFAAFSGTDRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHILS 121
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-------GDT--PLVDISHLEETL 178
DGG AC+NA TLALIDAGIP+++YV AC++ + G T P +D+++LEE+
Sbjct: 122 QDGGTLAACINATTLALIDAGIPLKDYVCACTSGQSTSIFDNEGSTPDPWLDVNYLEES- 180
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P+LTVA + + K+ + + K+ ++ L ++ + GCA + I+D ++++
Sbjct: 181 DIPSLTVATVGETEKIVALSMENKVRIEMLEGMIAVGISGCAKVKGIMDAEVRRY 235
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 138/230 (60%), Gaps = 3/230 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M LL E G+R DGR+ E R+I + G +DGSAYIE G+ K+L V+GPR V K
Sbjct: 8 MVLLDE--NGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPK 65
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ + ++ +Y M FS GERK P R+ EIS +++A+ A+M E PR+ +D
Sbjct: 66 HMSNTDTGILRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVD 124
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
+F+EVLQADGG CA + AA++AL DAGIPMR+ V A +A DT ++D+++ E+ G
Sbjct: 125 VFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQ 184
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ + +P K+ +++L L + + +D +KGC ++ + A+
Sbjct: 185 ADMPIGYMPSLKKITLLQLDGVLTPEEYKKCVDVGVKGCELVYELQKKAL 234
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 134/229 (58%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ++R+++ +GV S +DGSA + GNT +AAVYGPR + + + + +
Sbjct: 12 GRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDRAV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ AI E PRS+ID+FVE++QAD
Sbjct: 72 MRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V+ S L T ++D++ LE+ G ++ V +P
Sbjct: 132 GSTRVASLTAASLALADAGVPMRDLVIGVSVGLVNGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
G++ +++L D L A+KG +++ A+K ++A
Sbjct: 192 NLGRITLLQLDGSWSRDKFAEALKLAIKGAEYVYSKAREALKTKYFEIA 240
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +E+R C++ S DGS+Y+E G+TKV+ V GPR N+ +V
Sbjct: 57 GLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAV 116
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I+ ++A FST R R R D++ +E+++ +RQ + A++++++PR+QI + + V+
Sbjct: 117 -ISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVIAQ 175
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAA LA+IDAG+P+ +YV ACS+ + + L+D++ LEE P LT+ +
Sbjct: 176 DGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNTLEEQ-DVPFLTIGVI 234
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K++++ L +L + L VL +L G I I+D A+++H
Sbjct: 235 GKSDKISMLTLETQLPMASLEPVLATSLSGAHAIQDIMDAAVRKH 279
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 137/226 (60%), Gaps = 2/226 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ +E+R+++ ++GV S++DGS Y+E GN K+L AVYGPR + + ++ S
Sbjct: 12 NGLRLDGRQINEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRRLQKADSA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
LI ++Y+MA FS E + RP R++ EIS R+A IM+ ++P + ID+F EVLQA
Sbjct: 72 LIRYRYNMAAFSV-EDRIRPGPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAEVLQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A +NAA++AL DAGIPM+ V AC+ ++D++ E+ G +L V A+
Sbjct: 131 DAGTRTAAINAASIALADAGIPMKSLVSACAVGKVDGQLVLDLNKAEDNYGQADLPV-AM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G++ ++++ L + R L+ +GC I + A++
Sbjct: 190 TQDGEITLLQMDGNLTQEEFKRALEMCKEGCRQIMEMQKEALRNKF 235
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ELR I+ GV +DGS Y+E G KV+AAVYGPR V+ K + +
Sbjct: 11 GRRIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS ERK RP DR++ EIS R+A+ + IM E+ PRS IDIFVEVLQAD
Sbjct: 71 VRYRYNMAPFSVEERK-RPGPDRRSVEISKVSREALESIIMKELFPRSSIDIFVEVLQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ AC+NAA++AL+DAGIPM+ + + + + ++D E+ G ++ A
Sbjct: 130 AGSRTACLNAASVALVDAGIPMKGIITSVAVAKVDGVLVLDPMKEEDNYGEADIPFAFFI 189
Query: 190 LSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+GK +A++++ ++ + L + ++ A KG +I+ + AI
Sbjct: 190 RNGKIESIALLQMDGRVTKEELMQAVELAKKGAMEIYKLQREAI 233
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 138/225 (61%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ QS DGS+Y+EQGNTKV+ V GP+ NKS +
Sbjct: 11 GLRVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ F S+A FST RK R + +++ E++ L + +I+ +++PR+ I + + VL
Sbjct: 71 VVEFNVSIASFSTTNRKKRSKNEKRIIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A NA+TLALIDAGI M +Y+ SA L +PL+D++ LEE G LT+ +
Sbjct: 131 DGGLLAALTNASTLALIDAGISMYDYISGISAGLHDVSPLLDLNTLEEN-GMSFLTIGVV 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K++++ L K+ LD+L +L A+ G I ++D +++H
Sbjct: 190 GNSEKLSLLLLEDKIPLDNLEDLLAIAIAGAHRIRDLMDQEVRRH 234
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 2/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R ++ +GV S++DGS Y+E GN KVLAAVYGPR + + ++ VL
Sbjct: 13 GLRLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVL 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++Y+MA FS E + RP R+++EIS +A +M++ +P + ID+F EVLQAD
Sbjct: 73 VRYKYNMASFSV-EDRIRPGPSRRSTEISKVSGEAFEPVVMTQYYPGAVIDVFAEVLQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAATLAL DAGIPM+ V AC+ ++D++ E+ G +L V A+
Sbjct: 132 AGTRTAAINAATLALADAGIPMKGLVSACAVGKVDGQLVLDLNKPEDNYGQADLPV-AMT 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
G++ ++++ L + L L+ KGC I I A+
Sbjct: 191 QDGEITLLQMDGHLTPEELEEGLEMVKKGCQQIIEIQREAL 231
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 138/225 (61%), Gaps = 1/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR ELR ++ +GV +DGS+ +E GNTK++AAVYGPR + + + + +
Sbjct: 14 GRRLDGRRPDELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK+ P R+ E+S +R+A+ ++I+ E PRS IDIF+EV+QAD
Sbjct: 74 LRVRYHMTPFSTDERKS-PAPSRREIELSKVIREALESSILVEQFPRSSIDIFMEVIQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LA++DAGIP+R+ + A + A ++D++ E+ G ++ VA +P
Sbjct: 133 AGTRLASLMAASLAVVDAGIPVRDIIAAVAVGKADGVIVLDLNEPEDMWGEADMPVAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G++ +++L+ + + + LD A KG I+ + ++ L
Sbjct: 193 SLGQITLIQLNGHMSREEFKQALDLAYKGINTIYNLEKDVLRSRL 237
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 142/227 (62%), Gaps = 6/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHG 66
GLR DGRR +ELR+ C++ + S DGS+YIEQGNTKV+ V+GP+ +R++S +
Sbjct: 11 GLRVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRA 70
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ IN ++A FST ERK R R +++ E+ L + +I++ ++PR+ I++ V+VL
Sbjct: 71 TIEINL--NVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVL 128
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG + NA TLAL+DAGI M +YV A + +L TPL+D++ LEE LT+
Sbjct: 129 AQDGGMLASITNAITLALVDAGIAMYDYVSAVNVALHDQTPLLDLNTLEEN-DMSCLTIG 187
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A++ L K+ LD L VL A+ G I ++D +++H
Sbjct: 188 VVGKSEKLAMLLLEDKMPLDRLEAVLGIAIAGGHRIRDLMDEEVRRH 234
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +E+R CR+ + SDGS+YIEQGNTKV+ V GP +S
Sbjct: 8 GLRIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ S+A FST ERK R + +++ ++ L + ++M ++PR+ I I + VL
Sbjct: 68 TLEVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHVLSQ 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC NA TLALIDAG+ M +YV A +A L TPL+D++ LEE LT+ +
Sbjct: 128 DGGMLAACTNAMTLALIDAGVSMYDYVAAMTAGLHDQTPLLDMNGLEEN-DMSTLTIGVI 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K++++ L K+ LD L VL A+ G I ++D+ +++H
Sbjct: 187 GKSEKLSLLMLEDKIPLDRLESVLAIAIAGSHKIRDLMDSEVRRH 231
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 135/227 (59%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR ELR ++ ++GV ++GSA +E G TKVLAAV+GPR + I +
Sbjct: 18 GTRLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRAT 77
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ + + SE PR+ IDIF+EVLQAD
Sbjct: 78 LRVRYHMAPFSTSERKS-PAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQAD 136
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA++AL DAGIPM++ V+ + ++DIS LE+ G +L + P
Sbjct: 137 GGTRTAGLTAASVALADAGIPMKDLVIGVAVGKIEGNLVLDISELEDEYGEADLPLGIAP 196
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
G++ +++L+ L + L ++ A KG I+ I A+ IK
Sbjct: 197 NIGEIVLLQLNGVLTPEELKAGIELAWKGVDSIYKIAKEALYAKYIK 243
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 136/227 (59%), Gaps = 6/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGP-RP-VRNKSIKVHG 66
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP P +R++
Sbjct: 8 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERA 67
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +N ++A FST ERK R R +R+ E+ L + ++M ++PR+ I I V+VL
Sbjct: 68 NIEVNL--NIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVL 125
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG A +N+ TLALIDAGI M +YV S L TPL+D+++LEE LTV
Sbjct: 126 CQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEH-DMSCLTVG 184
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A+M L K+ LD L VL + G I ++D +++H
Sbjct: 185 VIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKH 231
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 136/227 (59%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR+DGR+ +ELR I+ +GV +DGSAY+E G TKV+AAVYGPR V + + + L
Sbjct: 11 GLRHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRAL 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y MA FST +RK+ P R+ E+S +R+A+ + + SE++PR+ ID+F+EVLQAD
Sbjct: 71 IRCRYHMAPFSTSDRKS-PAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG + AA+LAL DAGIPMR+ V + ++DI +E+ G ++ +
Sbjct: 130 GGTRTTGLTAASLALADAGIPMRDLVAGVAVGKVDGVLVLDIDEVEDEYGEADMPIGYAA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
++ +++L+ L ++ L+ A G I+ + + + +K
Sbjct: 190 GIDEIVLLQLNGVLTVEEFREALNLAKWGAEQIYKTMKETLHKKYLK 236
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 4/224 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ELR I+ GV ++DGS YIE G K++AAVYGPR V + ++ +
Sbjct: 12 GKRLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAI 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS ERK +P DR++ EIS R+A+ I+ E+ PRS IDIFVEVLQAD
Sbjct: 72 IRYRYNMAPFSVEERK-KPGPDRRSIEISKVSREALEPVILKELFPRSGIDIFVEVLQAD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G AC+NAA++ALIDAG+ MR + A + + ++D E+ G ++ A L
Sbjct: 131 AGTRTACLNAASVALIDAGVAMRGMITAVAVAKVEGEIVLDPMKEEDNYGEADVPFAFLI 190
Query: 190 LSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+GK +A++++ K+ + + + L+ A KG I+ I AI
Sbjct: 191 RNGKIESIALLQMDGKMSAEEMKKALELAKKGAMQIYNIQREAI 234
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 137/224 (61%), Gaps = 1/224 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR ELR ++ +GV +DGSA +E GNTK+LAAVYGPR + + + +
Sbjct: 13 NGLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y M FST ERK P R+ E+S +R+A+ + I+ E PR+ ID+F+EVLQA
Sbjct: 73 VLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + AA+LA++DAGIP+R+ + A + A ++D++ E+ G ++ VA +
Sbjct: 132 DAGTRLASLMAASLAVVDAGIPVRDLIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMM 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P G++ +++L+ + + + ++ A+KG I+ + +K
Sbjct: 192 PSIGQINLLQLNGNMTPEEFRQGMELAMKGINIIYNLEKETLKN 235
>gi|388502864|gb|AFK39498.1| unknown [Medicago truncatula]
Length = 180
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 111/154 (72%)
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ +YSMA FSTG+R +P+GDR+++EISL +RQ + I++ + PRSQIDI+V+VLQA
Sbjct: 6 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQVLQA 65
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAATLAL DAGIPM + V +CSA TPL+D++++E++ GGP++TV L
Sbjct: 66 DGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 125
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
KV ++++ KL +D L V+ A +GC I
Sbjct: 126 LKLDKVTLLQMDSKLPIDILENVMQLATEGCKAI 159
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 17 GKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 76
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 77 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 135
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ +A +P
Sbjct: 136 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 195
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + D + D A+KG I+ + A+K ++
Sbjct: 196 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 242
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 136/232 (58%), Gaps = 2/232 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR +ELR I+ GV +++DGSAYIE G K++ VYGP+ K + ++
Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR+T EIS + +A+S++IM E PR++ID+++EVLQAD
Sbjct: 77 KARYNMAAFSVDERK-RPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADA 135
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G A + AAT+AL DAGIPMR+ VV C+A ++D+S E+ G ++ +A +P
Sbjct: 136 GTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPK 195
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+G++ ++++ + D ++ I I A+ K+ G G
Sbjct: 196 TGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKY-KIEGIEG 246
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 1/224 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +LR I ++G+ + GSA + G T+V+AAVYGPR + + +
Sbjct: 13 NGLRVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPDRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y MA FST ERK+ P R+ E+S +R+A+ A + SE+ PR+ ID+F+EVLQA
Sbjct: 73 ILRIRYHMAPFSTSERKS-PAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG + AA+LAL DAGIPM++ + + ++DI+ +E++ G ++ VA +
Sbjct: 132 DGGTRTTSLTAASLALADAGIPMKDLIAGVAVGKVDGVLVLDINEIEDSTGQADMPVAIM 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P K+ +++L+ L D L A K +I+ + A+++
Sbjct: 192 PNLNKIVLLQLNGTLTRDEFNEALKMAQKAIKEIYIMQKEALRE 235
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 14 GKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 74 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ +A +P
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + D + D A+KG I+ + A+K ++
Sbjct: 193 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 239
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 6/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGP-RP-VRNKSIKVHG 66
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP P +R++
Sbjct: 8 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERA 67
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +N ++A FST ERK R R +R+ E+ L + ++M ++PR+ I I V+VL
Sbjct: 68 NIEVNL--NIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVL 125
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG A +N+ TLALIDAGI M +YV S + TPL+D+++LEE LTV
Sbjct: 126 CQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGVYDQTPLLDVNNLEEH-DMSCLTVG 184
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A+M L K+ LD L VL + G I ++D +++H
Sbjct: 185 VIGKSEKLALMLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKH 231
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 137/210 (65%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E R++RC L SDGSA E GNTKVLAAV+GP R S ++ +L
Sbjct: 8 GLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ + SMA FSTGER+ R +GDR+T+E+S +R+ + + +E+ RSQ+D+ ++VLQAD
Sbjct: 68 VKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVSIQVLQAD 127
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A VNAA LA++DAGIPM++ + CSA DTPL+D++++EE GGP + VA +P
Sbjct: 128 GGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDDTPLLDLNYMEEGGGGPEVHVAYMP 187
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGC 219
+V + K +D R + AL GC
Sbjct: 188 QMDRVVAIVTENKASVDVFERAHELALDGC 217
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 141/226 (62%), Gaps = 2/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR IR +GV ++GSA +E G TKVLAAVYGPR V K++++ +
Sbjct: 13 GLRVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQLPDRAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST E K+ P R+ E+S +R+A+ + + ++ PR+ ID+F+EV+QAD
Sbjct: 73 LRVRYHMAPFSTTEHKS-PAPTRREIELSKVIREALESVVFADQFPRASIDVFIEVIQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGIPM++ V + ++DI+ LE+ G +L V
Sbjct: 132 GGTRTAGLTAASLALADAGIPMKDLVAGVAVGKVEGVLVLDINELEDEYGEADLPVGYAV 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL-DTAIKQHL 234
G++ +++L+ L ++ + ++ A +G ++A++ +T K++L
Sbjct: 192 GIGEIVLLQLNGVLTVEEFKKAIELAKRGAEKVYALMKETLHKKYL 237
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 137/225 (60%), Gaps = 1/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR ELR ++ +GV +DGS+ +E GNTK++AAVYGPR + + + +
Sbjct: 14 GRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRAT 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK+ P R+ E+S +R+A+ ++++ E PRS ID+F+EV+QAD
Sbjct: 74 LRVRYHMTPFSTDERKS-PVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LA+IDAGIP+R+ + A + A ++D++ E+ G ++ VA +P
Sbjct: 133 AGTRLASLMAASLAIIDAGIPVRDAIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G++ +++L+ + + + LD A KG I+++ +K
Sbjct: 193 SLGQITLIQLNGHMTPEEFKQGLDLAYKGINTIYSMEKEVLKSKF 237
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ S SDGS+Y+EQGNTKV+ V GP +++
Sbjct: 11 GLRIDGRRWNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRAQMNQDKA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ ++A FST ERK R + +++ E+ L + +I+ ++PR+ I I V+VL
Sbjct: 71 NLEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSILLHLYPRTNITINVQVLSQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A N+ TLA+IDAGI M +YV + S L +PL+D+++LEET ++TV +
Sbjct: 131 DGGMLAAITNSITLAIIDAGIAMYDYVSSVSCGLFDQSPLLDLNNLEET-DVSSITVGVI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K+A++ L K+ LD L +VL + G I ++D +++H
Sbjct: 190 GKSEKLALLLLEDKMPLDSLEKVLSIGIAGSHRIKDLMDIEVRKH 234
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ E+R I+ LGV +DGSA E GNTKV+AAVYGP+ + + + +
Sbjct: 17 NGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRA 76
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y M FST ERK P R+ E+S +R+A+ + I+ E+ PR+ ID+F+EVLQA
Sbjct: 77 VLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 135
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G + AA++AL DAGIPMR+ + + A ++D++ E+ G ++ VA +
Sbjct: 136 DAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMM 195
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P +VA+++L+ + + L+ A KG I+ + AI+
Sbjct: 196 PSLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIR 238
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 132/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 19 GKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 78
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 79 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 137
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E G ++ +A +P
Sbjct: 138 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEAMWGEADMPIAMMP 197
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + D + D A+KG I+ + A+K ++
Sbjct: 198 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 244
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ E+R I+ LGV +DGSA E GNTKV+AAVYGP+ + + + +
Sbjct: 13 NGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y M FST ERK P R+ E+S +R+A+ + I+ E+ PR+ ID+F+EVLQA
Sbjct: 73 VLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G + AA++AL DAGIPMR+ + + A ++D++ E+ G ++ VA +
Sbjct: 132 DAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMM 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P +VA+++L+ + + L+ A KG I+ + AI+
Sbjct: 192 PSLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIR 234
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 133/236 (56%), Gaps = 44/236 (18%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR+I ++GV S++DGSA QGNT+VLA +YGP+
Sbjct: 11 GLRMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKE------------- 57
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
A F++GERK++ + D+KT E+ + +RQ + +M+ ++PRSQIDI+V+VLQ+D
Sbjct: 58 -------AGFASGERKSK-KTDKKTVELGMLIRQTFESVVMTALYPRSQIDIYVQVLQSD 109
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A +NA TLA+IDA D + +E T GGP L VA P
Sbjct: 110 GGALSAAINATTLAMIDA----------------------DPNFVENTAGGPELLVAIEP 147
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR-GLG 244
S V ME+ KL ++ RV A+ GC I+ +L ++ + +++ AR G+G
Sbjct: 148 KSQLVVSMEMESKLPMEMYERVAKLAIDGCNLIYRVLTDEVRDYTLQLYQARSGIG 203
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 4/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS 67
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGN+K++ V GP P + G+
Sbjct: 11 GLRMDGRRWNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKAQLSTTGA 70
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L N ++ FS+ +RK R + +R+ EI L++ +I+ + +PR+ I I V VL
Sbjct: 71 TL-NLNLNVTPFSSIDRKKRSKNERRIQEIITSLKRTFEQSIIIDKYPRTTISINVHVLS 129
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + NA TLALIDAGI M EY+ A SA +TPL+D++ LEE LT+A
Sbjct: 130 LDGGLISSITNAITLALIDAGIAMYEYISAVSAGWYDNTPLLDLNSLEEK-DVSYLTLAV 188
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A++ L K+ LD L VL A+ G I I+D +++H
Sbjct: 189 VGKSEKLALLILENKIPLDQLESVLAIAIAGGHRIRDIMDKEVRRH 234
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M LL E G+R DGR+ E R+I + G +DGSAYIE G+ K+L V+GPR V K
Sbjct: 8 MVLLDE--NGIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPK 65
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ + ++ +Y M FS GERK P R+ EIS +++A+ A+M + PR+ +D
Sbjct: 66 HMSNTDTGILRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLDKFPRTAVD 124
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
+F+EVLQADGG CA + AA++AL DAGIPMR+ V A +A DT ++D+++ E+ G
Sbjct: 125 VFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQ 184
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + +P K+ +++L L + + + + GC ++ + A+++
Sbjct: 185 ADMPIGYMPSLEKITLLQLDGVLTPEEYKKCVQVGVDGCKIVYELQKKALQE 236
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + +
Sbjct: 11 FEDGKRIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPD 70
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+L
Sbjct: 71 RAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QAD G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ VA
Sbjct: 130 QADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVA 189
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+P +V + +L+ + + + D A+KG I+ + A+K ++
Sbjct: 190 MMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVE 239
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP +S +
Sbjct: 8 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I ++A FST ERK R R +R+ E+ L + ++M ++PR+ I I V+VL
Sbjct: 68 NIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQ 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +N+ TLALIDAGI M +YV S L TPL+D+++LEE LT+ +
Sbjct: 128 DGGMLATIINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEH-DMSCLTIGVI 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K+A++ L K+ LD L VL + G I ++D +++H
Sbjct: 187 GKSEKLALLLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKH 231
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 2/226 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR E+R + +GV S++DGS Y+E G K+LAAVYGPR + + ++
Sbjct: 12 NGLRLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQKPDEA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ ++Y+MA FS +R RP R++ EIS R A + IM++ +P + ID+F EVLQA
Sbjct: 72 IVRYRYNMAAFSVEDR-ARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAEVLQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A +NAA++AL DAGIPM+ + AC+ ++D+S E+ G +L + A+
Sbjct: 131 DAGTRTAAINAASIALADAGIPMKGLISACAVGKVDGQLVLDLSKDEDNYGNADLPI-AM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G+++++++ L + + L+ A +GC I I A+K+
Sbjct: 190 TQDGEISLLQMDGNLTKEEFKKALEMATEGCRQILEIQKEALKKKF 235
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + +
Sbjct: 11 FEDGKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPD 70
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+L
Sbjct: 71 RAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEIL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QAD G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ VA
Sbjct: 130 QADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVA 189
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+P +V + +L+ + + + D A+KG I+ + A+K ++
Sbjct: 190 MMPSLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVE 239
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 14 GKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 74 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ VA +P
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEAEDMWGEADMPVAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + + + D A+KG I+ + A+K ++
Sbjct: 193 SLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVE 239
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 132/220 (60%), Gaps = 1/220 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR + LR ++ +GV + +DGSAYIE GN K+L VYGPR + +K ++
Sbjct: 6 IRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGAVL 65
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP +R+++EIS + +A++ I E +PR+ IDI +EVL+A+G
Sbjct: 66 RCKYNMAPFSVKERK-RPGPNRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEAEG 124
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G C + A+LAL DA IPM++ + AC+ D ++D+S E+ G ++ +A +P
Sbjct: 125 GTRCLGIVGASLALADAEIPMKDLISACAVGKVDDHIVLDLSEQEDQTGQADMPLAIIPR 184
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+G++ +++ L + LD A GC I+ + A+
Sbjct: 185 TGEITFLQMDGNLTQEEFEEALDLAYDGCYYINQLQKEAL 224
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 17/251 (6%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQS--DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
LRNDGR+ HE+R++R ++ S S GSA +E G T VLA V GP ++ +
Sbjct: 14 SNLRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPD 73
Query: 67 SVLINFQYSMAVFSTG--ERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+++ A FS+ R P+ DR+ E S L++A+ AAI+ ++P+S+I++ V
Sbjct: 74 QAVLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD--TP------LVDISHLEE 176
VL DGG CA +NAATLAL+DAGIPM+++V ACSA L G TP LVD++ EE
Sbjct: 134 VLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNRQEE 193
Query: 177 TLGG----PNLTVAALPLSGKVAVMELSQKL-HLDHLPRVLDCALKGCADIHAILDTAIK 231
+ G ++ VA LP + + + +L +LD L RVLD A +GC + IL A++
Sbjct: 194 SSTGGQAATHMPVALLPQRNTLVLAQCEARLPNLDTLERVLDAATEGCRAVFDILQAAVR 253
Query: 232 QHLIKVAGARG 242
+H V AR
Sbjct: 254 EHAATVLAARS 264
>gi|408404985|ref|YP_006862968.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365581|gb|AFU59311.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 247
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 1/224 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR ELR+++ +G +DGSA+IE G K+LAAVYGPR V K +
Sbjct: 11 NGKRTDGRGIDELREVKITVGTVKNADGSAFIEFGKNKILAAVYGPREVHPKHMAQSDRC 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y M+ FST RK P R+ EIS +R+A+ A+M E +PR+ ID+FVEVLQ+
Sbjct: 71 VLRCRYHMSPFSTDTRKN-PAPSRREVEISKVMREALEPALMLEDYPRAAIDVFVEVLQS 129
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG+ CA + AA +AL DAGI MR+ V AC+A D ++DI+ E+ G ++ VA +
Sbjct: 130 DGGSRCAGITAAAVALADAGINMRDLVAACAAGKVDDKIVLDINDTEDKEGSADMPVAYM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P ++ +++L KL D LD A+ GC ++ I A+ Q
Sbjct: 190 PRLEQITLLQLDGKLTPDQFNECLDKAIGGCKMVYEIQKQALMQ 233
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGR+ +ELR I L +DGSA + G T+VL V+GPR + +S +H
Sbjct: 11 GGYRSDGRKQYELRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQTLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N + S+A FSTGER+ R R DR+ E++ + + + ++PRSQIDI+V VLQ
Sbjct: 71 VLNVEMSVAPFSTGERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIYVHVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG AC+NA TLAL+ AG+P+ ++V A + + +PL+D++ LEE P++TVA +
Sbjct: 131 DGSLLPACINATTLALVTAGVPLLDFVCAVTGGVHSTSPLLDLTTLEEN-DVPHMTVAVM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRK 246
P + KV ++ + +LH++ + + A + IH + A+K + + A G K
Sbjct: 190 PRTRKVTLVTMETRLHVERFRELFELACEAGQTIHREMKYAVKDRTVALVNAMDAGSK 247
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 14 GKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 74 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ VA +P
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + + + D A+KG I+ + A+K ++
Sbjct: 193 SLNQVTLFQLNGNMTPEEFRQAFDLAVKGINIIYNLEREALKSKYVE 239
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 138/227 (60%), Gaps = 6/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGP-RP-VRNKSIKVHG 66
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP P +R++ H
Sbjct: 8 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHA 67
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ IN ++A F+T ERK R + +++ E+ L + +IM ++PR+ I I ++VL
Sbjct: 68 NIEINL--TIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQVL 125
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG A N+ TLALID+GI M +YV + + L TPL+D+++LEE NLT+
Sbjct: 126 SQDGGLLSAITNSITLALIDSGISMYDYVSSINCGLYDTTPLLDLNNLEEN-DISNLTIG 184
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A++ K+ LD L VL A+ G I ++D +++H
Sbjct: 185 VIGKSEKLALLLSEDKMPLDRLENVLSLAIAGSHRIRDLMDQEVRKH 231
>gi|340712756|ref|XP_003394921.1| PREDICTED: exosome complex component RRP41-like isoform 2 [Bombus
terrestris]
Length = 220
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 117/188 (62%), Gaps = 20/188 (10%)
Query: 69 LINFQYSMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++N QYSMAVFS +GERK RPRGDRK+ E SLQL+ A+ A I E++PRSQIDI+VE L
Sbjct: 21 IVNCQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEAL 80
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----------LVDISHLE 175
Q DG +C VNAATLALIDAGIP++ Y + C+ +L + ++D ++LE
Sbjct: 81 QVDGSEYCTSVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLE 140
Query: 176 ETLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCADIHAILDT 228
E G L++ ALP S G + V + Q+LHL + L GC DI ILD
Sbjct: 141 ECAPGVTLSIVALPNSDSKSKDGLIVVAQGAGQRLHLSQFESLKARVLYGCQDIKTILDH 200
Query: 229 AIKQHLIK 236
A++Q+L +
Sbjct: 201 AVRQYLTE 208
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R ++ +GV S++DGS Y+E G K+L V+GPR + + S +
Sbjct: 15 GLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAV 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS +R RP R++ EIS R+A IM+E+ P++ IDIFVEVLQAD
Sbjct: 75 IRYRYNMASFSVEDR-ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NA+++AL DAGIPM+ + +C+ ++D++ E+ G + V A+
Sbjct: 134 AGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPV-AMT 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G++ ++++ L D + + L+ KGC +I I +++
Sbjct: 193 QDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVLRKKF 237
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 140/236 (59%), Gaps = 1/236 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR ELR +RC+LG Q+DGSA E GNTKV+A YGP+ N+S +H +
Sbjct: 8 GLRLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQALHNRAI 67
Query: 70 INFQYSMAVFSTGERKTRPRGDR-KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ Y+ A FSTG R+ R KT+E++ +R A+ I+ ++ PR+QI + V+VLQA
Sbjct: 68 VKCDYAEAAFSTGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGVSVQVLQA 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NAA LAL +AGIP+R+ + A SA TPL+D++ LE T GP +T+A
Sbjct: 128 DGGVLGACINAAMLALANAGIPLRDMIAATSAGYLESTPLLDLNFLESTGAGPEVTLALH 187
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
KV ++ + + V + A +GC + + + QH+ VA RGL
Sbjct: 188 TNLDKVVILTEDSTIAAEPFEAVTELAQQGCKAVAHFMRAQLLQHVQTVATVRGLA 243
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 135/230 (58%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + +
Sbjct: 11 GGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y MA FST + + P R+ EIS LR+A+ A+M E +PRS+ID+F+E+LQA
Sbjct: 71 VMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG A + AA+LAL DAGI MR+ V+ S L T ++D++ LE+ G +L V +
Sbjct: 131 DGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P + +++L D L L+ A+KG ++ A+K + +A
Sbjct: 191 PNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIA 240
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 138/228 (60%), Gaps = 1/228 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR ELR ++ +GV +DGS+ +E GNTK++AAVYGPR + + + +
Sbjct: 14 GRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRAT 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK+ P R+ E+S +R+A+ ++I+ E PRS ID+F+EV+QAD
Sbjct: 74 LRVRYHMTPFSTDERKS-PVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LA++DAGIP+++ + A + A ++D++ E+ G ++ VA LP
Sbjct: 133 AGTRLASLMAASLAVVDAGIPVKDVIAAVAVGKADGVVVLDLNEPEDMWGEADMPVAMLP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
G++ +++L+ + + L+ A KG + I+ + ++ ++
Sbjct: 193 SLGQITLIQLNGNMTQQEFKQGLELAYKGISTIYNLEKEVLRNKFAEI 240
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP +++
Sbjct: 11 GLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ ++A FST ERK R + +++ E+ L + I+ ++PR+ I I V+VL
Sbjct: 71 NVEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A N+ TLAL+DAGI M +YV + S L +PL+D+++LEE LT+ +
Sbjct: 131 DGGMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQSPLLDLNNLEEN-DMSCLTIGVI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K+A++ L K+ LD+L +VL A+ G I ++D +++H
Sbjct: 190 GKSEKLALLMLEDKMPLDNLEKVLGIAIAGSHRIKDLMDMEVRRH 234
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 14 GKRIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 74 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ VA +P
Sbjct: 133 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDMWGEADMPVAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + + + D ++KG I+ + A+K ++
Sbjct: 193 SLNQVTLFQLNGNMTPEEFRQAFDLSVKGINIIYNLEREALKSKYVE 239
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 1/228 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ ELR I+ LGV +DGSA E GNTKV+AAVYGP+ + + + +
Sbjct: 13 NGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ +Y M FST ERK P R+ E+S +R+A+ + I+ + PR+ IDIF+EVLQA
Sbjct: 73 SLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G + AA++AL DAGIPMR+ + + A + ++D++ E+ G ++ +A L
Sbjct: 132 DAGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVL 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
P G+V +++L+ + D R + A KG + I+A+ A+K ++
Sbjct: 192 PSLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALKNKYLE 239
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 137/229 (59%), Gaps = 2/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGRR +LR IR +GV +DGSA +E G T VLAAVYGPR V + ++ +
Sbjct: 12 GRRHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAV 71
Query: 70 INFQYSMAVFST-GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I +Y M FST GERK+ P R+ E+S +R+A+ AI+S ++PR+ IDIFVEV+ A
Sbjct: 72 IRCRYRMLSFSTLGERKS-PAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
+GG A + AA+LAL DAGIP+ + V A + ++D+ LE+ G ++ +AA+
Sbjct: 131 NGGTRTAGITAASLALADAGIPLADLVAAVAVGKIDGVIVLDLDELEDMYGEADMPIAAM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
P ++ +++L+ L + L L+G I+ + +++ ++V
Sbjct: 191 PSLNRITMLQLNGVLTKEEFKAALKLGLQGIKQIYELQKETLRRKYVEV 239
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR E+R ++ +GV S++DGS Y+E G KVL V+GPR + + + +
Sbjct: 13 GLRLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FST +R RP R++ EIS R+A IM+E+ P++ IDIFVE+LQAD
Sbjct: 73 IRYKYNMASFSTEDR-ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NA+++AL DAGIPM+ V +C+ ++D++ E+ G + V A+
Sbjct: 132 AGTRTAAINASSIALADAGIPMKGLVTSCAFGKVDGQIVLDLNKEEDNYGEADFPV-AMT 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
G++ ++++ L D + + + KGC +I I
Sbjct: 191 QDGEITLLQMDGNLTTDEIRKGFELVKKGCKEILEI 226
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C++ S DGS+Y+EQGNTK++ V GP KS S
Sbjct: 8 GLRIDGRRWNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKSQVNATSS 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ S+A FST ERK R + D++ +E+ L + + IM ++PR+ I + V+VL
Sbjct: 68 TVEVNVSLANFSTFERKKRSKTDKRITELKTTLERTFNECIMGHLYPRTLISVTVQVLAQ 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-LVDISHLEETLGGPNLTVAA 187
DGG A NA TLALIDAGI M +YV +A L T L+D++ LEE +LT+
Sbjct: 128 DGGLLAAMTNAVTLALIDAGIAMYDYVSGVNAGLYDQTSALLDLNTLEEN-DMCSLTIGV 186
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A++ L KL LD L VL A+ G I ++D +++H
Sbjct: 187 IGKSEKLALVVLEDKLPLDRLESVLAIAIAGSHRIRELMDMEVRKH 232
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 139/236 (58%), Gaps = 4/236 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+L+ + G R GR ELR I+ +G+ ++DGS Y E GN K LAAVYGPR + +
Sbjct: 6 MELIKD---GKRLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPR 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ ++ ++Y+MA FS +RK RP DR++ EIS+ R+A+ I+ E++P++ I+
Sbjct: 63 HFQNAKRAVVKYRYNMAPFSVDDRK-RPGPDRRSQEISMVSRKALDPVILRELYPKTAIE 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
++VEVLQ+D G A +NAA++AL DAGIPMR+ V + + ++D+ E+ G
Sbjct: 122 VYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGE 181
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
++ +A + + + ++++ +L + R L A+ GC I+ + A+ + K
Sbjct: 182 ADVPIAMIARTNTITLLQMDGRLKKEEFERGLKLAMNGCRKIYELQKAALVEKYSK 237
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR +LR +R ++G+ +DGSA +E G T+VLAAVYGPR + +
Sbjct: 15 GRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAA 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ +++E PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYHMAPFSTDERKS-PAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A V AA+LAL DAGIPMR V + +VD+ LE+ G ++ VAA P
Sbjct: 134 GGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
G++ +++L+ L + L AL+ + + AI++ ++V G
Sbjct: 194 DIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYLEVGG 243
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 139/238 (58%), Gaps = 1/238 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR +ELR I + +DG A + G T+V +V+GPR R +S +H
Sbjct: 11 GGYRSDGRRQYELRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARLRSQTIHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN + ++A FSTG+R+ R RGD++ E ++ I + ++PRSQIDI V VLQ
Sbjct: 71 NINVEVNIAPFSTGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQIDIHVLVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+NA TLALIDAGIP+ + + A + + +PL+D+++LEE P++TVA +
Sbjct: 131 DGGVLQACINATTLALIDAGIPLLDILCAVTGGVHSTSPLLDLTNLEEN-DVPHITVAIM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRK 246
P +GK + + +LH+D V A + +H + A+K +A A G G K
Sbjct: 190 PRTGKATLATMETRLHVDRFEEVFKIACEAAHVLHTEMKAAVKNRTAALASAMGAGPK 247
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ELR I+ +GV ++DGS Y+E G+ KV+AAVYGPR + + + +
Sbjct: 11 GKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+Y+MA FST +RK RP DR++ EIS R+A IM E++P++ I+++VE+LQ+D
Sbjct: 71 VKFRYNMAPFSTDDRK-RPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPM++ V + + G ++D++ E+ G ++ +A +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + +++ +L + R L A+ C I+ + TA+
Sbjct: 190 RTNTITALQMDGRLTKEEFGRGLKLAMGACHQIYELQRTAL 230
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E R+I + G +DGS+YIE G+ K+L V+GPR V K + + +
Sbjct: 15 GKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS GERK P R+ EIS +++A+ A+M E PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA + AA++AL DAGIPMR+ V A +A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
K+ +++L L + + + + GC ++ + A+
Sbjct: 194 NLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 133/221 (60%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ELR I+ +GV ++DGS Y+E GN KV+AAVYGPR + + + +
Sbjct: 11 GKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+Y+MA FST +RK RP DR++ EIS R+A IM E++P+ ID++VE+LQ+D
Sbjct: 71 VKFRYNMAPFSTDDRK-RPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPM++ V + + G ++D++ E+ G ++ +A +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKIGGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + +++ ++ + R L A+ C I+ + A+
Sbjct: 190 RTNTITALQMDGRMTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+RK+R +GV ++DGSAY+E G T++ A V GPR V K +++ +
Sbjct: 14 GLRVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGV 73
Query: 70 INFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN +Y MA FS ERK P G R+ E+S +R+A+ + E PR IDIFVEV+QA
Sbjct: 74 INCRYHMASFSVDERK--PLGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVIQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A + AA+LAL DAGIPM + + A + ++DI+ E+ G ++ VA
Sbjct: 132 DGGTRTAGITAASLALADAGIPMADMIAAIAVGKVDGVLVLDINEQEDKYGEADMPVAIA 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P + +++L+ ++ + + + L+ A + IH + A+K+
Sbjct: 192 PHLNSIVLLQLNGRMTPEEVDKGLEMAQQAVQKIHHMQIEALKR 235
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 132/225 (58%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ CR+ + SDGS+Y+EQGNTKV+ V GP +++
Sbjct: 8 GLRIDGRRWNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRAQMNQDKA 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ ++A FST ERK R + +++ E+ L + +++ ++PR+ I I V+VL
Sbjct: 68 NLEVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSVLLHLYPRTNITINVQVLSQ 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A NA TLA+IDAGI M +YV + S L +PL+D+++LEE+ +TV +
Sbjct: 128 DGGMLAAITNAITLAIIDAGIAMYDYVSSVSCGLIDQSPLLDLNNLEES-DVSAITVGVI 186
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
K+A++ L K+ LD L +VL + G I ++D +++H
Sbjct: 187 GKGEKLALLLLEDKMPLDSLEKVLSIGIAGSHRIKDLMDMEVRKH 231
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E R+I + G +DGSAYIE G+ K+L V+GPR V K + + +
Sbjct: 15 GKRCDGRTVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS GERK P R+ EIS +++A+ A+M + PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA + AA++AL DAGIPMR+ V A +A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
K+ +++L L + + + + GC ++ + A+
Sbjct: 194 NLEKITLLQLDGVLTPEEYKKCVQVGVDGCKLVYELQKKAL 234
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR ELR I+ GV ++DGSAY+E G K+LA+VYGPR + + + +I
Sbjct: 11 LRGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPRESYIRRLLKPNTGVI 70
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS +RK RP DR+++EIS A+ A+M E PRS +D+ +EV++A+G
Sbjct: 71 RVRYNMAPFSVDDRK-RPGPDRRSTEISKIAADALRPALMLESFPRSMVDVSIEVIEAEG 129
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA +AL DAGIPM++ VV C+A D ++D+S E+ G ++ +A +P
Sbjct: 130 GTRCAGITAAAVALADAGIPMKDIVVGCAAGKVNDEIVLDLSEKEDKEGQADVPIAIMPR 189
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+G++ +++ L + LD A++GC I I A+K
Sbjct: 190 TGEITLLQADGNLTEEEFEEALDLAIEGCMKISEIQHEALK 230
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 5/222 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR +ELR ++ + + +DGS+Y+EQGNTKV+ V+GP KS
Sbjct: 10 GFRIDGRRWNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSKVSLDRER 69
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I S+A FS+ ERK R + D++ E +++ AI + +HPRS+I+I ++VL D
Sbjct: 70 ITIDISIAAFSSVERKKRTKSDKRIQEYVACIQKVFEKAIQTGLHPRSEINICIQVLAQD 129
Query: 130 GGNFC----ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
GG F C+NA +LALI+AGIPM +YV A + PL+D++ +EE TV
Sbjct: 130 GGMFNRILQTCINAVSLALINAGIPMYDYVSASTVGSTDTDPLLDLNAVEEN-SISWYTV 188
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILD 227
A L S + +++ ++H++ +L AL GC I+ I+D
Sbjct: 189 AILGKSEDIILLQTETRIHMEKFEHMLSLALHGCQQIYKIMD 230
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 133/221 (60%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR ELR I+ +GV ++DGS Y+E GN KV+AAVYGPR + + + +
Sbjct: 11 GKRSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I F+Y+MA FST +RK RP DR++ EIS R+A IM E++P+ I+++VE+LQ+D
Sbjct: 71 IKFRYNMAPFSTDDRK-RPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPM++ V + + ++D++ E+ G ++ +A +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGEVVLDLNAAEDNNGEADMPIAMIA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + +++ ++ + R L A+ C I+ + A+
Sbjct: 190 RTNTITALQMDGRMTQEEFGRGLKLAMGACHQIYELQRAAL 230
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 139/236 (58%), Gaps = 4/236 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+L+ + G R GR ELR I+ +GV ++DGS Y E G+ K LAAVYGPR + +
Sbjct: 6 MELIKD---GKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPR 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ ++ ++Y+MA FS +RK RP DR++ EIS+ R+A+ I+ E++P++ I+
Sbjct: 63 HFQNAKMAVVKYRYNMAPFSVDDRK-RPGPDRRSQEISMVSRKALDPVILRELYPKTAIE 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
++VEVLQ+D G A +NAA++AL DAGIPMR+ V + + ++D+ E+ G
Sbjct: 122 VYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGE 181
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
++ +A + + + ++++ +L + R L A+ GC I+ + A+ + K
Sbjct: 182 ADMPIAMIARTNTITLLQMDGRLKKEEFERGLKIAMSGCRKIYELQRAALVEKYSK 237
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 6/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHG 66
GLR DGRR +ELR+ CR+ S SDGS+YIEQGNTK++ V GP +R+++
Sbjct: 11 GLRIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKA 70
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
S+ IN S+A FST ERK R + +++ E+ L + +++ +++PR+ I I + VL
Sbjct: 71 SIEINL--SVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHVL 128
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DGG NA TLALIDAGI M +YV A +A L TPL+D++ LEE LT+
Sbjct: 129 CQDGGLLAGMTNAITLALIDAGIAMYDYVSAINAGLYDQTPLLDLNTLEEN-DMSCLTIG 187
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K+A++ L K+ LD L VL + G + ++D +++H
Sbjct: 188 VVGKSEKLALLLLEDKMPLDMLESVLAIGIAGGHRVRDLMDNEVRKH 234
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 134/238 (56%), Gaps = 1/238 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR+D RR +ELR + L +DGSA + G T V ++GPR R +S H V
Sbjct: 12 GGLRHDARRPYELRSLSLLLSPHPTADGSATVTSGLTSVTVTIFGPREPRIRSSSSHDHV 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ + + +S R RGDR+ E+ + L+Q+ IM ++PRS+I I V+VL +
Sbjct: 72 TLTVEVGVPPWSQQSGMKRTRGDRRLVEMGMSLKQSFEPVIMGNLYPRSEILINVQVLSS 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NA TLALIDAGIP+ +Y+ + S L PL+D+S EE+ P+L VA L
Sbjct: 132 DGGILPTAINATTLALIDAGIPLLDYLTSISLGLHLTQPLLDLSQPEES-DLPSLVVACL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRK 246
P SGKV + ++ +LH+D +L ++GC I ++ +K+ + G +G K
Sbjct: 191 PASGKVTLAQMETRLHVDRFEEMLLLGVEGCGVIKMEMERVVKERTEGLVGRYKMGVK 248
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 2/233 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +ELRK+ + G + GSA GNTK++A V GPR ++S ++H +
Sbjct: 11 GLRIDGRRPNELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSKELHDRAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++ + R+ R RGDR +E+ +RQ I + + PRSQIDI VE++QAD
Sbjct: 71 VTCSVIVSPSAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDISVEIVQAD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G VNA ++ALIDAG+P+++++ AC L+D++ EE+ GP+L V+ +P
Sbjct: 131 GPVRACVVNAVSMALIDAGLPIKDFLCACEVGYIDGQLLLDMNGEEESARGPDLYVSYMP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL--IKVAGA 240
+ L +L L+ + LD AL GC +++ +L A+ + +++AGA
Sbjct: 191 CQDAIVSTFLEPRLPLEVFGQALDLALNGCREMYKMLQLALAIVMLSLRLAGA 243
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 131/222 (59%), Gaps = 2/222 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E+R ++ +GV S++DGS Y+E G KVLAAVYGPR + + ++ +
Sbjct: 12 NGLRLDGRRVDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQIPDAA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
LI ++Y+MA FS E + RP R++ EIS +A ++++ +P + IDIF E++QA
Sbjct: 72 LIRYRYNMASFSV-EDRIRPGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFTEIIQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A +NAA++AL DAGIPM+ V AC+ ++D++ E+ G +L V A+
Sbjct: 131 DAGTRTAAINAASIALADAGIPMKGLVSACAVGKVDGQLVLDLNKDEDNFGAADLPV-AM 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
G++ ++++ L + ++ GC +I I A+
Sbjct: 190 TQDGEITLIQMDGNLTQEEFKEAIEMVRAGCMEILEIQKKAL 231
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 139/236 (58%), Gaps = 4/236 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+L+ + G R GR ELR I+ +GV ++DGS Y E GN K +AAVYGPR + +
Sbjct: 6 MELIKD---GKRLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPR 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ ++ ++Y+MA FS +RK RP DR++ EIS+ R+A+ I+ E++P++ I+
Sbjct: 63 HFQNAKMAVVKYRYNMAPFSVDDRK-RPGPDRRSQEISMVSRKALDPVILRELYPKTAIE 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
++VEVLQ+D G A +NAA++AL DAGIPM++ V + + ++D+ E+ G
Sbjct: 122 VYVEVLQSDAGTRTAGINAASVALADAGIPMKDLVSSVAIGKIDGEVVLDLDAKEDNFGE 181
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
++ +A + + + ++++ +L + R L A+ GC I+ + A+ + K
Sbjct: 182 ADMPIAMVARTNTITLLQMDGRLKKEEFERGLQLAMTGCRKIYELQKAALVEKYSK 237
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 124/223 (55%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR +E+R+ CR+GV + GS++I+ GNT+VL V GP K
Sbjct: 12 GLRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAF 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN + + A FS +RK R R D++ E + +++ AI E++P+SQI I + VL+ D
Sbjct: 72 INVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVLEDD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG C+NAATLALIDAGI M +YV +A + L+D++ EE+ +TV L
Sbjct: 132 GGAIATCINAATLALIDAGIAMVDYVCCATAGIYETQVLLDLNTNEES-DISWMTVGVLG 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GKV ++ KL LD L A+ GC I + ++Q
Sbjct: 191 TKGKVTYLKQETKLSLDLFEPALTTAIAGCDHIALQMQKVVRQ 233
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 131/231 (56%), Gaps = 3/231 (1%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR+D RR ELR + C LGV Q+DGS+ + QG T V AAV+GPR + K+ H
Sbjct: 10 AGLRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAGAAHDKA 69
Query: 69 LINFQYSMAVFSTGER--KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ + + ++ G+ + R RGD++ EI +RQ I ++PRS+I + V+VL
Sbjct: 70 NVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QADGG +NA TLALIDAGI M +YV + S L L+D+S EE P+L VA
Sbjct: 130 QADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEEN-DLPSLVVA 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+LP SGK+ + ++ +LH+D +L + C I ++ +K +V
Sbjct: 189 SLPNSGKITLAQMETRLHVDRFEEMLRLGTEACKVIKDDMEQVVKTRTERV 239
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 138/236 (58%), Gaps = 4/236 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+L+ + G R GR ELR I+ +GV ++DGS Y E GN KV+A VYGPR + +
Sbjct: 6 MELIKD---GKRLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPR 62
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ ++ ++Y+MA FS +RK RP DR++ EIS+ R+A+ I+ E++P++ I+
Sbjct: 63 HFQNAKMAVVKYRYNMAPFSVDDRK-RPGPDRRSQEISMVSRKALDPVILRELYPKTAIE 121
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
++VEVLQ+D G A +NAA++AL DAGIPMR+ V + + ++D+ E+ G
Sbjct: 122 VYVEVLQSDAGTRTAGINAASVALADAGIPMRDLVSSVAIGKIDGEVVLDLDAKEDNFGE 181
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
++ +A + + + ++++ +L + R L A+ G I+ + A+ + K
Sbjct: 182 ADMPIAMIARTNTITLLQMDGRLKKEEFERGLKLAMDGSRKIYELQKAALVEKYSK 237
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 133/221 (60%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ELR I+ +GV ++DGS Y+E G+ KV+AAVYGPR + + + +
Sbjct: 11 GKRLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+Y+MA FST +RK RP DR++ EIS R+A IM E++P+ I+++VE+LQ+D
Sbjct: 71 VKFRYNMAPFSTDDRK-RPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NAA++AL DAGIPM++ V + + ++D++ E+ G ++ +A +
Sbjct: 130 AGTRTAGINAASIALADAGIPMKDLVSSIAVGKINGEMVLDLNAAEDNNGEADMPIAMIA 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + +++ +L + R L A+ C I+ + TA+
Sbjct: 190 RTNTITALQMDGRLTKEEFERGLKLAVGACHQIYELQRTAL 230
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 7/238 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C++ + S GS+Y+EQGNTKV+ V GP +S
Sbjct: 11 GLRVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I ++A FST ERK R + +++ E+ + + +++ +++PR+ I + + VL
Sbjct: 71 TIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NA TLALIDAGI M +YV A +A L +TPL+D++ LEE +LT+ +
Sbjct: 131 DGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEEN-DMSHLTLGVI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRK 246
S K+AV+ L K+ +D L VL + G I ++D ++H G R + RK
Sbjct: 190 GKSEKLAVLMLEDKMPMDRLEPVLAIGIAGSHRIRELMDQETRRH-----GERRVKRK 242
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR +E+R IR GV +DGSAYIE G K++ AVY R K + +
Sbjct: 11 GLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVY-VREAYPKHAQNIDKAI 69
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK RP DR+T EIS + +A+ +AIM E PR++ID+++EVL+AD
Sbjct: 70 VKARYNMAGFSVEERK-RPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEAD 128
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA++A+ DAGIPM++ V C+A A ++D+S E+ G ++ +A LP
Sbjct: 129 AGTRIASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDNYGDADIPMAILP 188
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
SGK+ +++L + L ++ L +I I
Sbjct: 189 KSGKIILLQLDGDVSEQELEEAMEMMLGAMKNISRI 224
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 4/221 (1%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
LLT+ G R DGR E R + ++GV ++GSA + GNT VLAAVYGPR + I
Sbjct: 9 LLTD---GKRVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYI 65
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
V ++ +Y MA FST +RK P R+ EIS ++QA+ + E +P+S ID+F
Sbjct: 66 TVPDKAVVRVRYHMAPFSTDDRKN-PAPTRREIEISKVVKQALETVVFLEQYPKSTIDVF 124
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
+EVLQADG + AA+LAL DAGIPMR+ VV S DT +VD++ LE+ G +
Sbjct: 125 LEVLQADGSTRVTSITAASLALADAGIPMRDLVVGVSVGKINDTVIVDLNKLEDNYGDGD 184
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIH 223
L +A V +M+L + R L+ A K +I+
Sbjct: 185 LPIAIAYRKNWVLLMQLDGVWKPSEVKRGLELAFKAAENIY 225
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 132/229 (57%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR ++R++ +GV S +DGSA + GNT +AAVYGPR + + + + +
Sbjct: 12 GKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDKAV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ AI E PRS+ID+F+E+LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V+ S L ++D++ LE+ G ++ V +P
Sbjct: 132 GSTRVASLTAASLALADAGIPMRDLVIGVSVGLVNGVVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
++++++L + L A+KG +++ A+K ++A
Sbjct: 192 NLRRISLLQLDGAWTRERFTEALRLAIKGAEYVYSKAREALKSKYFEIA 240
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 131/231 (56%), Gaps = 3/231 (1%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR+D RR ELR + C LGV Q+DGS+ + QG T V AAV+GPR + K+ H
Sbjct: 10 AGLRHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAGAAHDKA 69
Query: 69 LINFQYSMAVFSTGER--KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ + + ++ G+ + R RGD++ EI +RQ I ++PRS+I + V+VL
Sbjct: 70 NVVVEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QADGG +NA TLALIDAGI M +YV + S L L+D+S EE P+L VA
Sbjct: 130 QADGGILPTAINAVTLALIDAGIAMHDYVTSVSVGLHLTQALLDLSAPEEN-DLPSLVVA 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+LP SGK+ + ++ +LH+D +L + C I ++ +K +V
Sbjct: 189 SLPNSGKITLAQMETRLHVDRFEVMLRLGTEACKVIKDDMEQVVKTRTERV 239
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 7/238 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C++ S GS+Y+EQGNTKV+ V GP +S
Sbjct: 11 GLRVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I ++A FST ERK R + +++ E+ + + +++ +++PR+ I + + VL
Sbjct: 71 TIEVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NA TLALIDAGI M +YV A +A L +TPL+D++ LEE +LT+ +
Sbjct: 131 DGGMLATMINATTLALIDAGIAMYDYVAAVAAGLHNETPLLDLNTLEEN-DMSHLTLGVI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRK 246
S K+AV+ L K+ +D L VL + G I ++D ++H G R + RK
Sbjct: 190 GKSEKLAVLMLEDKMPMDRLEPVLAIGIAGSHRIRELMDQETRRH-----GERRVKRK 242
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C++ + SDGS+Y+EQGN+K++ V GP + +S
Sbjct: 11 GLRVDGRRWNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRSQMDVNKA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
I S+A FST RK R + +++ E+ + +I+S ++PR+ I I ++VL
Sbjct: 71 NIEVSISIAHFSTFHRKKRSKNEKRIVELKTAIENTFENSIISHLYPRTFIQINIQVLAQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG NAATLALIDAGI M +YV SA L PL+D++ LEE LT+ +
Sbjct: 131 DGGLLAGMANAATLALIDAGIAMYDYVSCVSAGLYDQYPLLDLNTLEEN-DMSYLTIGVI 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
S K+A++ L K+ LD L VL A+ G + ++D ++ H
Sbjct: 190 GKSEKLALLMLENKMPLDKLEPVLGLAIAGGHRVRELMDEEVRSH 234
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 128/227 (56%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR +E R +R +GV ++GSA + GNT +LAAVYGPR V K +++ +
Sbjct: 13 GKRSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAI 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST E + P R+ EIS +R A+ ++ E PR+ ID+++EVLQAD
Sbjct: 73 LRVRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + AA+LAL DAGIPMR+ +V S T +VD++ LE+ G ++ +A +
Sbjct: 133 GSTRVTGITAASLALADAGIPMRDLLVGVSIGKVSGTIVVDLNQLEDQYGEGDMPLAIMY 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
G + +M+ + + + LD A K I+ + +K ++
Sbjct: 193 GRGLITLMQADGEWTPTEVNQALDLAFKAAEQIYRLEKETLKSRYVE 239
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 5/241 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR+ +ELR + L + +DGSA + G T+VL +VYGPR + +S H
Sbjct: 12 GYRSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRAT 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
IN + A FS+GER+ R RGD++T E+ ++Q +++ ++PRS ID+F+ +LQ D
Sbjct: 72 INVEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G AC+NA TLALI AG+P+ ++V A SA + ++D++ LEE P + A +P
Sbjct: 132 GSLIPACINATTLALICAGVPLLDFVCAVSAGVHDTESMLDLTTLEEN-DLPWVNAAVMP 190
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK----VAGARGLGR 245
+GKV ++ L +LH+ + AL +H + AI+ K ++ +G G+
Sbjct: 191 KTGKVVMVGLETRLHVQRFEEMFRIALDAAKVLHQEMKAAIQDRTNKLTLAMSAVKGPGQ 250
Query: 246 K 246
K
Sbjct: 251 K 251
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 135/235 (57%), Gaps = 1/235 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR D RR +ELR +L SDGS+ QG T V+ +V+GPR RN+S+ H
Sbjct: 12 GGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+++ + + ++ G R RGD++ EI +RQ IM+ ++PRS+I I V+VL A
Sbjct: 72 VVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NA TLALIDAGI + +YV + S L PL+D+S EE+ P+L +A+L
Sbjct: 132 DGGILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEES-DLPSLVIASL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P SGK+ + ++ +LH+D +L ++ C + +D +K ++ R +
Sbjct: 191 PSSGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKDRTERIVERRSI 245
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 116/177 (65%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVF 79
ELR ++ +LGVF Q+DGSAY+EQGNTKVLA + GP + G + ++ ++ A F
Sbjct: 39 ELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYASF 98
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
ST +R+ R R DRK +E ++ + + + +M ++ RS I++ V+VLQADGG +NA
Sbjct: 99 STDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAINA 158
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAV 196
A+LA++DAG+PM++++ AC+A + ++D +H E GP+LTVA +P + + +
Sbjct: 159 ASLAMMDAGVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPDLTVAVMPRTNTIVL 215
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 139/230 (60%), Gaps = 3/230 (1%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
L+TE G+R DGR HE+R I+ +GV ++DGSA++E G ++LAAV+GPR V K +
Sbjct: 12 LITE--EGIRTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHM 69
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ LI +Y+MA FST ER+ RP DR++ E+S +R+A+ AI +E +P S IDIF
Sbjct: 70 VLPDRALIRARYNMAPFSTPERR-RPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIF 128
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VEVL++D G A +NAA+LAL AG+ MR V ACS G +VD +H E+ G +
Sbjct: 129 VEVLRSDAGTRVAGINAASLALASAGVAMRGLVSACSVGRVGSFIVVDPNHDEDMWGDSD 188
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +A + S ++ +++ L + LD + ++ + A+K+
Sbjct: 189 MPLAMMMESEEITLLQADGTLSEEEFKEALDLGRRAIRFVYEVQKEALKR 238
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 132/232 (56%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G+R DGR ++R++ +G+ S +DGSA + G T +AAVYGPR + + + +
Sbjct: 9 FQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +Y MA FST + + P R+ EIS LR+A+ A++ E +PRS+ID+F+E+L
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QADG A + AA+LAL DAG+ MR+ V+ S L ++D++ LE+ G +L V
Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVG 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+P + +++L D L+ A+KG ++ A+K + +A
Sbjct: 189 YMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIA 240
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 34 SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRK 93
+DGSA+IE G K++AAVYGP K ++ ++ +YSMA FS ERK RP DR+
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERK-RPGPDRR 59
Query: 94 TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMRE 153
E+S + +A+ + I E +PR+ ID+++EVLQAD G A + A+LAL DAGIPMR+
Sbjct: 60 AIELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRD 119
Query: 154 YVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLD 213
+V C+A D ++D++ E+ G ++ +A +P + ++A++++ + + L +D
Sbjct: 120 LIVGCAAGKIDDVVVLDLNKEEDNFGQADVPMAIMPRTKEIALLQMDGDMSYEELTTAMD 179
Query: 214 CALKGCADIHAILDTAIKQHLIK 236
A+ IH + A+K+ I+
Sbjct: 180 MAMDAAEKIHEMQVEALKRKYIE 202
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ E+R I+ ++GV + +DGSA +E G T+VLAAVYGP+ KS+ +
Sbjct: 15 GKRLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKE-SQKSMLLPDRAT 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK P R+ E+S LR+++ +++E PR+ ID+F+EVLQ+D
Sbjct: 74 LRVRYHMAPFSTEERKN-PAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIEVLQSD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG AA+LAL DAGIPMR V + + +VD++ +E+ G ++ V A P
Sbjct: 133 GGTRTVGATAASLALADAGIPMRALVAGVAIGKVDNVLIVDLNEVEDMYGDADMPVVAAP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
G++ + +L+ L + +D A+K I
Sbjct: 193 DIGQITLYQLNGVLTKEEFHNAIDMAMKVITKI 225
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 138/229 (60%), Gaps = 13/229 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR +E+R I+ + GV ++DGSA+IE G K++ AVY R K + +
Sbjct: 12 GLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVY-VREAYPKHAQNIDRAI 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+M+ +S ERK RP DR+T EIS + +A+S+AI+ E PR++ID+F++VL+AD
Sbjct: 71 VKARYNMSGYSVEERK-RPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLEAD 129
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + A+++A+ DAG+PMR+ VV C+A A ++D+S E+ G ++ +A LP
Sbjct: 130 AGTRIASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMAILP 189
Query: 190 LSGKVAVMEL-----------SQKLHLDHLPRVLDCALKGCADIHAILD 227
+GKV +++L + + +D +PR+ + ++I D
Sbjct: 190 RTGKVVLLQLDGDVTEEEFNEATSMMMDAMPRISELQRNALMSKYSIED 238
>gi|118576719|ref|YP_876462.1| RNase PH [Cenarchaeum symbiosum A]
gi|259645399|sp|A0RXU1.1|ECX1_CENSY RecName: Full=Probable exosome complex exonuclease 1
gi|118195240|gb|ABK78158.1| RNase PH [Cenarchaeum symbiosum A]
Length = 243
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 137/226 (60%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR+ E R++ GV + ++GSAYIE G+ K+LA ++GPR V K + + +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M+ FS ERK +P R+ EIS +++A+ ++M E PR+ +D+F+EVLQAD
Sbjct: 75 LRCRYHMSPFSVSERK-KPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG+ CA + AA++AL DAGIPMR+ V AC+A DT ++D+++ E+ G ++ V +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
+V +++L L D R A+ GC ++ + A+
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKALSDRFF 239
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 127/218 (58%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
+R+++ +GV S +DGSA + G T +AAVYGPR + + + + ++ +Y MA FS
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 60
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
T + + P R+ EIS LR+A+ AIM E +PRS+ID+FVE+LQADG A + AA
Sbjct: 61 TKDERKSPTPSRREIEISKVLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVASLTAA 120
Query: 141 TLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELS 200
+LAL DAGI MR+ V+ S L T ++D++ LE+ G +L V +P + +++L
Sbjct: 121 SLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLLQLD 180
Query: 201 QKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + L+ A++G ++ I A+K +A
Sbjct: 181 GAWTREAFLQALNLAVRGAEHVYQIARDALKTKYTSIA 218
>gi|328777663|ref|XP_395806.4| PREDICTED: exosome complex exonuclease RRP41-like isoform 2 [Apis
mellifera]
Length = 210
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 118/195 (60%), Gaps = 24/195 (12%)
Query: 66 GSVLINFQY----SMAVFS--TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
G++ QY SMAVFS +GERK +PRGDRK+ E SLQL+ A+ A I E++PRSQI
Sbjct: 9 GTLKFWLQYMDLISMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQI 68
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-------DTPL---- 168
DI+VE LQ DG +CA VNAATLALIDAGIP++ Y + C+ +L D L
Sbjct: 69 DIYVEALQVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINCPSLEDEDNTLEKGV 128
Query: 169 VDISHLEETLGGPNLTVAALPLS------GKVAVME-LSQKLHLDHLPRVLDCALKGCAD 221
+D +++EE G L+V ALP S G + V + Q+LHL + L GC D
Sbjct: 129 LDANYVEECAPGVTLSVVALPNSDGISKDGLIVVAQGAGQRLHLSQFESLKARVLCGCQD 188
Query: 222 IHAILDTAIKQHLIK 236
I ILD A++Q+L +
Sbjct: 189 IKTILDHAVRQYLTE 203
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 1/235 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GGLR D RR +ELR +L SDGS+ QG T V +V+GPR RN+ + H
Sbjct: 12 GGLRQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGLASHDRA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+++ + + ++ G R RGD++ EI +RQ IM+ ++PRS+I I V+VL A
Sbjct: 72 VVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NA TLALIDAGI + +YV + S L PL+D+S EE+ P+L +A+L
Sbjct: 132 DGGILPTSINATTLALIDAGISLLDYVSSISIGLHLLQPLLDLSQPEES-DLPSLVIASL 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P SGK+ + ++ +LH+D +L ++ C + +D +K ++ R +
Sbjct: 191 PSSGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKDRTERIVERRSV 245
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 135/229 (58%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + + +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ AI+ E +PRS+ID+FVE+LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGI MR+ VV S L T ++D++ LE+ G +L + +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ +++L D + L+ A++G ++ I A+K + +A
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIA 240
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 144/255 (56%), Gaps = 36/255 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR--------NKSI 62
LR DGRR +ELR+I ++ + +DGS+Y+EQGNTK+L +V GP R +K
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
KV V INF A FS ER+ R + D++TSE+ +R A ++ ++P S I +
Sbjct: 73 KVE--VEINF----AGFSGVERRKR-KSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLN 125
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDIS 172
+ ++ DG AC+NA+TLALIDAGIPM +Y+VAC+ + + D PL+D++
Sbjct: 126 IHIVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLN 185
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ EE L P LTV L S KVAV + ++ ++ L +L ++GC + ILD +K
Sbjct: 186 NQEE-LELPFLTVGTLGESDKVAVCLMESRVRMERLESMLAVGIEGCKRMRNILDGVVK- 243
Query: 233 HLIKVAGARGLGRKF 247
G G++F
Sbjct: 244 ---------GYGKRF 249
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 127/225 (56%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR +E R +R +GV S ++GSA + GNT +LAAVYGPR V K +++ ++
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y M FST E + P R+ EIS +R A+ ++ E PR+ ID+++EVLQADG
Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGS 134
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
+ AA+LAL DAGIPMR+ +V S T +VD++ LE+ G ++ +A +
Sbjct: 135 TRVTGITAASLALADAGIPMRDLLVGVSVGKVSGTIIVDLNQLEDQYGEGDMPLAIMYGR 194
Query: 192 GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
G + +M+ + + + ++ A K I+ + +K ++
Sbjct: 195 GLITLMQADGEWTPTEVNQAVELAFKAAEQIYRLQKDVLKNKYVE 239
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 145/255 (56%), Gaps = 36/255 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR--------NKSI 62
LR DGRR +ELR+I ++ + +DGS+Y+EQGNTK+L +V GP R +K
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQA 72
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
KV V INF A FS ER+ R + D++TSE+ +R A ++ ++P S I +
Sbjct: 73 KVE--VEINF----AGFSGVERRKR-KSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLN 125
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDIS 172
+ ++ DG AC+NA+TLALIDAGIPM +Y+VAC+ + + D PL+D++
Sbjct: 126 IHIVSQDGSLLAACINASTLALIDAGIPMTDYLVACTAASSASASAADNASADDPLLDLN 185
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ EE L P LTV L S KVAV + ++ ++ L +L ++GC + +ILD +K
Sbjct: 186 NQEE-LELPFLTVGTLGDSDKVAVCLMESRVRMERLESMLAVGIEGCKRMRSILDGVVK- 243
Query: 233 HLIKVAGARGLGRKF 247
G G++F
Sbjct: 244 ---------GYGKRF 249
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 133/229 (58%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR ++R+++ ++G S +DGSA + G T +AAVYGPR + + + + +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ A+M E +PRS+ID+F+E+LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGI MR+ VV S L T ++D++ LE+ G ++ V +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ +++L + L A+KG ++ + A+K + +A
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALKNKYMAIA 240
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Query: 8 GGGLRNDGRRGHELRKIRCRLG--VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
GG R DGR+ ELR I +LG + +DGSA I QG T V A V+GPR R + +H
Sbjct: 9 AGGFRVDGRKQFELRSIAIQLGGSPDTSADGSAQITQGLTTVSATVFGPREARTGANMIH 68
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + +A + + ER+ R RGDR+ E + ++ I + ++PRSQIDIFV+V
Sbjct: 69 DRASVNVEVCLAPWGSTERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
Q DGG A +NAATLAL+DAGI M+++V + S + + ++D+S+ EE + P++TV
Sbjct: 129 HQQDGGVLPAAINAATLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNAEE-MDLPHVTV 187
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
A LP + +V + L +LH++ ++ A++ A +H ++ A++
Sbjct: 188 AVLPRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHNEMELAVR 233
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 140/252 (55%), Gaps = 28/252 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
LR DGRR +ELR I ++ + +DGS+Y+E GNTKVL +V GP K G+
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGP-AAEGKQTGQRGTTSD 71
Query: 70 ----INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
I+ + + A FS +R+ R + D+KTSE+ LR A + ++PRS I I V +
Sbjct: 72 KLAKIDVEINFAGFSGVDRRKR-KTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHI 130
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDISHLE 175
+ DG AC+NAATLAL+DAGIPM +Y+VAC+ + + D PL+D+++ E
Sbjct: 131 VSQDGSLLAACLNAATLALVDAGIPMTDYLVACTAASSASAEAADNASADDPLLDLNNQE 190
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
E L P LTVA L S VAV + ++ ++ L +L ++GC + ILD +K
Sbjct: 191 E-LELPFLTVATLGESDNVAVCVMESRVRMERLESMLAVGIEGCKRMRGILDDVVK---- 245
Query: 236 KVAGARGLGRKF 247
G G++F
Sbjct: 246 ------GYGKRF 251
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 140/253 (55%), Gaps = 28/253 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
LR DGRR +ELR I ++ + +DGS+Y+E GNTKVL +V GP + G +
Sbjct: 13 LRLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGISN 72
Query: 70 -----INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
I+ + + A FS +R+ R + D+KT+E+ LR A + ++PRS I I V
Sbjct: 73 DKLAKIDVEINFAGFSGVDRRKR-KTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVH 131
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDISHL 174
V+ DG AC+NAATLAL+DAGIPM +Y+VAC+ + + D PL+D+++
Sbjct: 132 VVSQDGSLLAACLNAATLALVDAGIPMTDYLVACTAASSASAEAADNASADDPLLDLNNQ 191
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
EE L P LTVA L S VAV + ++ ++ L +L ++GC + ILD +K
Sbjct: 192 EE-LELPFLTVATLGESDDVAVCVMESRVRMERLESMLAVGIEGCKRMRGILDDVVK--- 247
Query: 235 IKVAGARGLGRKF 247
G G++F
Sbjct: 248 -------GYGKRF 253
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 3/226 (1%)
Query: 8 GGGLRNDGRRGHELRKIRCRLG--VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
GG R DGR+ +ELR I +LG + +DGSA I G T V A V+GPR R+ +H
Sbjct: 9 AGGFRVDGRKQYELRSIAIQLGGSEDTTADGSAQITHGLTTVSATVFGPREARSGGNMLH 68
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + ++A + + ER+ R RGDR+ E + ++ + + ++PRSQIDIFV V
Sbjct: 69 DRASLNVEVALAPWGSMERRRRNRGDRRLVEFASAIKSTFEPVVHTHLYPRSQIDIFVHV 128
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
Q DGG A +NAATLAL+DAGI M ++V A S + L+D+S+ EE+ PNLTV
Sbjct: 129 HQQDGGVLPAAINAATLALLDAGIAMHDFVAAVSCGIHSTAALLDLSNAEES-DLPNLTV 187
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
A LP + +V + L +LH++ ++ + A+ +H + A++
Sbjct: 188 AVLPRTKQVTLASLETRLHVERFQQIFNLAIDAAQVLHNEMQLAVR 233
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 124/215 (57%), Gaps = 1/215 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E+R +R GV +DGSAY+E GN KVLAAVYGPR + + +
Sbjct: 14 GRRVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAI 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YSM FS ERK+ P+ R+ E+S +R+A++ A+ +PR+ I++++ +L+AD
Sbjct: 74 LKCRYSMLPFSVAERKS-PQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILEAD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + A ++AL DAGI MR+ V A + G+ ++DI+ +E+ G ++ +A +P
Sbjct: 133 GGTRTASIIAGSVALADAGIAMRDLVAAIAVGKIGNVLVLDINGIEDQYGDGDMPIAMMP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHA 224
G++ +++ + L A K I+A
Sbjct: 193 QRGEITLLQADGVFTPQEIEEALRLAQKAFQKIYA 227
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Query: 8 GGGLRNDGRRGHELRKIRCRLG--VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
GG R DGR+ +ELR I +LG + +DGSA I QG T V A V+GPR R+ + +H
Sbjct: 9 AGGFRVDGRKQYELRSIAIQLGGSQDTAADGSAQITQGLTIVSATVFGPREARSGANVIH 68
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + S+A + + ER+ R RGDR+ E + ++ I + ++PRSQIDIFV+V
Sbjct: 69 DRASLNVEVSLAPWGSMERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
Q DGG A +NA+TLAL+DA I M ++V + S + + ++D+S+ EE P+LTV
Sbjct: 129 HQQDGGVLPAAINASTLALLDASIAMHDFVASVSCGIHSTSAMLDLSNTEEQ-DLPHLTV 187
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
A LP + +V + L +LH++ ++ A++ A +H ++ A++
Sbjct: 188 AVLPRTKQVTLASLETRLHVERFEQIFTLAIEAAAVLHNEMELAVR 233
>gi|340344304|ref|ZP_08667436.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519445|gb|EGP93168.1| Putative exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 244
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR+ E R+I + G +DGSAYIE G+ K+L V+GPR V K + + +
Sbjct: 15 GIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS ERK P R+ EIS +++A+ A+M E PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYHMEPFSVTERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA ++AA++AL DAGIPMR+ V AC+A A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
K+ +++L L + + ++ +KGC ++ + A+
Sbjct: 194 SLEKITLLQLDGVLTPEEYKKCVETGIKGCKIVYELQRKAL 234
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 22/246 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKV--- 64
LR DGRR +ELR+I ++ + +DGS+Y+E G+TKV+ V GP P R +
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 65 -----HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ V +N +A FS+ +RK R RGD+ E+ + QA++A++ + + P S I
Sbjct: 73 GGQSKNAEVAVNI--VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTI 130
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDI 171
+I + VL DG A +NAATLA +DAGIPM +YV AC+A G PL+D+
Sbjct: 131 NISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDM 190
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H EE P LTVA L S +VAV+ ++ + L +L + GC + ILD ++
Sbjct: 191 NHQEEQ-ELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRVVR 249
Query: 232 QHLIKV 237
+ IK+
Sbjct: 250 EKGIKM 255
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + S + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHSHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLIEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 137/246 (55%), Gaps = 22/246 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKV--- 64
LR DGRR +ELR+I ++ + +DGS+Y+E G+TKV+ V GP P R +
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 65 -----HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ V +N +A FS+ +RK R RGD+ E+ + QA++A++ + + P S I
Sbjct: 73 GGQSKNAEVAVNI--VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTI 130
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDI 171
+I + VL DG A +NAATLA +DAGIPM +YV AC+A G PL+D+
Sbjct: 131 NISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDM 190
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H EE P LTVA L S +VAV+ ++ + L +L + GC + ILD ++
Sbjct: 191 NHQEEQ-ELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRVVR 249
Query: 232 QHLIKV 237
+ IK+
Sbjct: 250 EKGIKM 255
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 10/223 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR+ +GV ++DGSA +E GNT+V+A+V+GP+ + K ++ +
Sbjct: 13 GNRVDGRKADELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHLQESDRAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y+MA FS +R + P +R+ EI L + A+ A+ E P + IDI +EV+++D
Sbjct: 73 IKMRYNMAPFSVDDRMS-PGPNRRAQEIELVAKNALKPALELERFPTAGIDISMEVVESD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL- 188
GG + AA+LAL DAGIPM+ V AC+A + DTP++D++ E+ G ++ +A +
Sbjct: 132 GGTRVTGITAASLALADAGIPMKGMVSACAAGVVDDTPVLDVNGKEDKKGNADIPIATIN 191
Query: 189 --------PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIH 223
+V ++++ L + + ++ A KGC ++
Sbjct: 192 RTDDDTESTEDDRVTLLQMDGDLTTEQVDECVELAKKGCEKLY 234
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 137/246 (55%), Gaps = 22/246 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKV--- 64
LR DGRR +ELR+I ++ + +DGS+Y+E G+TKV+ + GP P R +
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGGGGG 72
Query: 65 -----HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ V +N +A FS+ +RK R RGD+ E+ + QA++A++ + + P S I
Sbjct: 73 GGQSKNAEVAVNI--VIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTI 130
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDI 171
+I + VL DG A +NAATLA +DAGIPM +YV AC+A G PL+D+
Sbjct: 131 NISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDM 190
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H EE P LTVA L S +VAV+ ++ + L +L + GC + ILD ++
Sbjct: 191 NHQEEQ-ELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRVVR 249
Query: 232 QHLIKV 237
+ IK+
Sbjct: 250 EKGIKM 255
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 5/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGS 67
GLR DGRR +ELR+ C + + SDGS+Y+EQGN K++ V GP+ P+ + +
Sbjct: 11 GLRLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKA 70
Query: 68 VLINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
L N ++ FS ER K+ + +R+ E+ L + +M ++PR+ IDI + VL
Sbjct: 71 SL-NITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
Q DGG + +N+ TLALID+GI M +YV A S L TPL+D++ LEE +T+
Sbjct: 130 QQDGGILGSLINSITLALIDSGIAMYDYVSAISIGLYDTTPLLDVNTLEEN-AMSTVTLG 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 189 VIGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRVRELMDNELRKH 235
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 10/229 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRP-----VRNKSIK 63
GLR DGRR +ELR+ C++ + +DGS+Y++QGN+KVL V GP +
Sbjct: 11 GLRVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLD 70
Query: 64 VHGSVL-INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+G VL +N Y F++ ERK RP+ DR+ EIS+ L++ I+ + + R+ IDI
Sbjct: 71 PNGPVLSLNINY--PPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTAIDIN 128
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
+ VL DGG NA TLALIDAGI + +YV A S L TPL+D++ LEE
Sbjct: 129 LTVLAMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQTPLLDMNALEEN-DLSF 187
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+T+ + S K+ + KL LD L R++ ++GC + ++D ++
Sbjct: 188 ITIGVVGDSDKLNLTLCEDKLPLDKLERLISLGIEGCHRLKELMDLQVR 236
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 127/226 (56%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C + S SDGS+Y+EQGN KV+ V GP+ +S
Sbjct: 11 GLRLDGRRWNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRSQMDTEKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ ++ FS ER K+ + +R+ E+ L + +M ++PR+ IDI V VLQ
Sbjct: 71 ILKISVNITQFSKFERSKSSHKNERRVLEMQTALIRTFEKNVMLNIYPRTLIDIEVHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D++ LEE ++T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLDVNSLEEN-AMSSVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLETVLAIGIAGAHRVRDLMDEELRKH 235
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 140/242 (57%), Gaps = 14/242 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
LR DGRR +ELR+I ++ + +DGS+Y+E GNTK+L +V GP R + +
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQG 72
Query: 70 -INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ + + A FS +R+ R + D++TSE+ LR A ++ ++P S I + + ++
Sbjct: 73 KVEVEINFAGFSGVDRRKR-KSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQ 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDISHLEETL 178
DG AC+NAATLALIDAGIPM +Y+VAC+ + + D PL+D+++ EE L
Sbjct: 132 DGSLLAACINAATLALIDAGIPMSDYLVACTAASSASASAADNASADDPLLDLNNQEE-L 190
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P LTVA L S KV+V + ++ ++ L +L ++GC + ILD +++ ++
Sbjct: 191 ELPFLTVATLGESDKVSVCIMESRVRMERLEGMLAVGIEGCKRMRGILDGVLRRGTLRTP 250
Query: 239 GA 240
+
Sbjct: 251 AS 252
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 131/216 (60%), Gaps = 1/216 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR +LR + ++GV +DGSA++ G T+V+AAVYGPR + + + +
Sbjct: 13 GKRHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y MA FST ERK P R+ E+S +R+A+ A I++ + PR+ ID+F+EV++AD
Sbjct: 73 IRCRYHMAPFSTDERKN-PAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGIPM+ V + T ++DI LE+ G ++ VAA+P
Sbjct: 132 GGTRTAALTAASLALADAGIPMKGLVAGVAVGKVQGTLVLDIDELEDMYGEADMPVAAIP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
K+ +++L+ L P+ L A +G IHA+
Sbjct: 192 SLNKIVLLQLNGVLEPREFPQALKLAWEGIKKIHAM 227
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 130/226 (57%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR++ C + + SDGS+Y+EQGN KV+ V GP+ + +S
Sbjct: 11 GLRVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
I+ ++ FS ER K+ + +R+ E+ L + +M ++PR+QI+I + VLQ
Sbjct: 71 TISVALNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D++ +EE ++T+
Sbjct: 131 QDGGLMSSLINGITLALIDAGIAMYDYISGVSIGLYDTTPLLDLNSVEEN-AMSSVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD + VL + G I ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRMESVLAIGIAGSHRIRELMDKELRKH 235
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 13 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 72
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 73 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 132
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 133 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 191
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 192 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 237
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 123/211 (58%), Gaps = 2/211 (0%)
Query: 24 IRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGE 83
++ +GV S++DGS Y+E G K+L V+GPR + + S +I ++Y+MA FS +
Sbjct: 1 MKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVED 60
Query: 84 RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLA 143
R RP R++ EIS R+A IM+E+ P++ IDIFVEVLQAD G A +NA+++A
Sbjct: 61 R-ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIA 119
Query: 144 LIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKL 203
L DAGIPM+ + +C+ ++D++ E+ G + V A+ G++ ++++ L
Sbjct: 120 LADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPV-AMTQDGEITLIQMDGNL 178
Query: 204 HLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
D + + L+ KGC +I I +++
Sbjct: 179 TPDEIKQGLELVKKGCKEILEIQQAVLRKKF 209
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITRFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGTLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDDELRKH 235
>gi|329766296|ref|ZP_08257843.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796026|ref|ZP_10379390.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137198|gb|EGG41487.1| exosome complex exonuclease 1 [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 245
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 134/221 (60%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR+ E R+I + G +DGSAYIE G+ K+L V+GPR V K + + +
Sbjct: 15 GIRCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS ERK P R+ EIS +++A+ A+M E PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYHMEPFSVTERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA ++AA++AL DAGIPMR+ V AC+A A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALSAASVALADAGIPMRDMVAACAAGKAADTIILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
K+ +++L L + ++ + GC ++ + A+
Sbjct: 194 SLEKITLLQLDGVLTPAEYKKCVETGIHGCKIVYELQKKAL 234
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 3/225 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C + S + DGS+Y+EQGN KV+ V GP+ ++S
Sbjct: 11 GLRLDGRRWNELRRFECSINTHSHAADGSSYLEQGNNKVITLVKGPQEPSSRSQVDTAKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+ ++ FS ER KT + +R+ E+ L + + +M V+PR+ I+I V VLQ
Sbjct: 71 LLRISVNITKFSKTERSKTSHKNERRVLEMQTALVRTFNKNVMLNVYPRTLINIEVHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ + K++++ + K+ LD L VL + G I ++D +++
Sbjct: 190 VGKTEKLSLLLVEDKIPLDRLENVLAIGIAGTHRIRDLMDKELRK 234
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 146/249 (58%), Gaps = 14/249 (5%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQS--DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
GLR D RR +ELR++ ++ S + DGS+ + G TKV ++V GP+ + + S H
Sbjct: 9 SAGLRQDNRRPYELRQLDFKILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNH 68
Query: 66 GSVL---------INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPR 116
S L I +M FS +RK + D++ ++S ++ + IM +++PR
Sbjct: 69 KSNLKSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIMLKLYPR 128
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACS-ASLAG-DTPLVDISHL 174
S I+IF+EVLQ DGG A +NA +L+LI +GI +++Y++A S SL+ + PL+D+++L
Sbjct: 129 SLIEIFIEVLQEDGGLLQAAINATSLSLIASGISIQDYILAISIGSLSNPNLPLLDVTNL 188
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
E+ L P+LT+A+LP S K++++++ +L++D ++ L+ C + L +K+ +
Sbjct: 189 EQ-LDLPSLTIASLPRSSKISLIQVESRLNIDEFEKLCRIGLEACEVLKDELLGEVKRWM 247
Query: 235 IKVAGARGL 243
+ + G
Sbjct: 248 LDLNSIVGF 256
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFS-QSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS 67
GLR DGRR +ELR+ CR+ +DGSAY+E GNTK++ + GP P R++ GS
Sbjct: 8 GLRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGS 67
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ I S FST ER+ R DR+ E+S L+ ++ + +PR+ I++ V VL
Sbjct: 68 LDIKLHVSP--FSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLA 125
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG AC NA TLAL+DAGI + +Y+ A SA + + L+D++ LEE ++T+
Sbjct: 126 QDGGLLAACCNAITLALVDAGIALYDYISAVSAGVFDNQILLDLNRLEEQ-DLSSVTIGV 184
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + K++++ +L D L +V + A+ GC + +D +
Sbjct: 185 VGKTKKLSLVLSETRLPQDRLAKVFEVAVNGCHQLKDQMDAQV 227
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + SDGS+Y+EQGN K++ V GP+ ++S
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRSQVDTNKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+ ++ FS ER K+ R +R+ E+ L + +M ++PR+ IDI + VLQ
Sbjct: 71 LLRISVNITQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLIDIEIHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D++ LEET ++T+
Sbjct: 131 QDGGIMGSLLNGITLALIDAGIAMYDYISGISVGLYDTTPLLDVNSLEET-AMSSVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD + VL + G I ++D ++ H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRMETVLAIGIAGAHRIRDLMDEELRSH 235
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 134/230 (58%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + +
Sbjct: 11 NGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y MA FST + + P R+ EIS LR+A+ A++ E +PRS+ID+F+E++QA
Sbjct: 71 VMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG A + AA+LAL DAGI MR+ VV S L ++D++ LE+ G +L V +
Sbjct: 131 DGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P + +++L + + L+ A+KG ++ I A+K + +A
Sbjct: 191 PNLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSIA 240
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 130/234 (55%), Gaps = 15/234 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSI---KVHG 66
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP P R
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQSKEA 72
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+V +N +A FS+ +RK R R D++T E+ + +AVSA + + + P S I I + VL
Sbjct: 73 AVTVNL--VVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVL 130
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDISHLEETL 178
DG A +NA+TLALIDAGIPM +Y+ AC+A G PL+D++ EE
Sbjct: 131 SQDGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQ- 189
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P +TV L L+ +VAV+ ++ + L +L + GC + +D +K+
Sbjct: 190 ELPYMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVKE 243
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 137/226 (60%), Gaps = 3/226 (1%)
Query: 8 GGGLRNDGRRGHELRKIRCRLG--VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH 65
GG R DGR+ ELR I +LG + +DG A I QG T V A V+GPR R+ + +H
Sbjct: 9 AGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMH 68
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + S+A + + ER+ R RGDR+ E + ++ I + ++PRSQIDIFV+V
Sbjct: 69 DRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
Q DGG A +NA+TLAL+DAGI M+++V + S + + ++D+S+ EE P++TV
Sbjct: 129 HQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTEEQ-DLPHVTV 187
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
A LP + ++ + L +LH++ ++ A++ A +H ++ A++
Sbjct: 188 AVLPRTKQITLASLETRLHVERFEQIFTLAIQAVAVLHNEMELAVR 233
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +E+R+ C + + + DGS+Y+EQGN K++ V GP+ +S
Sbjct: 11 GLRLDGRRWNEVRRFECSINTHAHAADGSSYLEQGNNKIITLVKGPKEPSLRSQANSLKA 70
Query: 69 LINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ ++ FS ER + +R+ EI L + IM ++PR+QI I V +LQ
Sbjct: 71 TMDVSVNITRFSKFERSAISHKNERRVLEIQTALLRTFEKNIMLHLYPRTQISIQVHILQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG F + +N TLALIDAGI M +YV S L TPL+D++ LEE +T+
Sbjct: 131 QDGGMFASLINGITLALIDAGIAMYDYVSGISIGLFDTTPLLDVNTLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 IGKSEKLSLLSVEDKIPLDRLESVLAIGIAGAHRLRDLMDEELRKH 235
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 13/233 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--- 67
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP + +V +
Sbjct: 13 LRVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRD 72
Query: 68 -VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
IN A FS+ +RK R R D++T EI + + A ++ + + + P S I I + VL
Sbjct: 73 VAAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVL 132
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDISHLEETL 178
DG A +NA TLALIDAGIPM +Y+ AC+A AGD PL+D+++ EE
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDDSADPLLDLNNQEEQ- 191
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P LTVA L S +VA + ++ + L +L + GC + LD +K
Sbjct: 192 ELPFLTVATLGGSDRVAALVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 244
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 22/246 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH----- 65
LR DGRR +ELR++ ++ +DGS+Y E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQ 72
Query: 66 ------GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
S+++N +A FS+ +RK R R D++T EI + + +A+S+ + + + P S I
Sbjct: 73 APGRDAASIIVNV--VIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSI 130
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDI 171
+ + VL DG A +NAATLA+IDAGIPM +Y+ AC+A AGD PL+D+
Sbjct: 131 TVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAGSTSSYAAGDDSADPLLDL 190
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
++ EE P LTVA+L S +V + ++ + L +L L GC + LD IK
Sbjct: 191 NNQEEQ-ELPFLTVASLGDSDRVVALVCESRVQVSRLEGMLVVGLDGCKQVKMFLDKTIK 249
Query: 232 QHLIKV 237
+K+
Sbjct: 250 DRGVKM 255
>gi|58266980|ref|XP_570646.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110456|ref|XP_776055.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258723|gb|EAL21408.1| hypothetical protein CNBD1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226879|gb|AAW43339.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 262
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 140/243 (57%), Gaps = 3/243 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+D+L + GGLR D RR +ELR +L S SDGS+ QG T V +V+GPR RN+
Sbjct: 6 VDILND--GGLRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNR 63
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ H +++ + + ++ G R RGD++ EI +RQ IM+ ++PRS+I
Sbjct: 64 GLASHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIA 123
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I V+VL ADGG +NA TLALIDAGI + +YV + S L PL+D+S EE+
Sbjct: 124 IHVQVLSADGGILPTSINATTLALIDAGIALLDYVSSISIGLHLLQPLLDLSQPEES-DL 182
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P+L +A+LP SGK+ + ++ +LH+D +L ++ C + +D +K ++
Sbjct: 183 PSLVIASLPSSGKITLAQMETRLHVDRFEEMLTLGVEACKVLKEEMDGVVKDRTERIVER 242
Query: 241 RGL 243
RG+
Sbjct: 243 RGI 245
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 139/249 (55%), Gaps = 23/249 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR+I ++ + +DGS+Y+E GNTK+L +V GP + + G
Sbjct: 13 LRLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ + + A FS ER+ R GD+++ E+ +R A ++ ++P S I + + ++
Sbjct: 73 KVEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQ 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACS----------ASLAGDTPLVDISHLEETL 178
DG AC+NA+TLALIDAGIPM +Y+VAC+ + + + PL+D++ LEE
Sbjct: 133 DGSLLAACINASTLALIDAGIPMTDYLVACTAASSASSSAADNASAEDPLLDLNTLEEQ- 191
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P LTV L S KVAV L ++ ++ L +L ++GC + +ILD +K
Sbjct: 192 ELPFLTVGTLGESDKVAVCVLETRVRMERLEGMLAVGIEGCKRLRSILDEVVK------- 244
Query: 239 GARGLGRKF 247
G G++F
Sbjct: 245 ---GYGKRF 250
>gi|443688633|gb|ELT91268.1| hypothetical protein CAPTEDRAFT_224286 [Capitella teleta]
Length = 176
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-G 180
F VLQ+DGGN+C VNAATLALIDAGIPM++YV ACSAS DT L+DI++LEE+ G
Sbjct: 52 FHHVLQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFIKDTALLDINYLEESSGRS 111
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
L VA LP +V ++E+ +LH DHL +VLD A+KGC D++AILD A+++H+ + +
Sbjct: 112 AELVVATLPKWDQVVLLEMDGRLHEDHLNKVLDTAVKGCKDVYAILDAAVREHVTETTAS 171
Query: 241 RGL 243
L
Sbjct: 172 LSL 174
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 3/225 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C + S + DGS+Y+EQGN K++ V GP+ +S
Sbjct: 11 GLRVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+ ++ FS ER KT + +R+ EI L + + +M ++PR+ IDI + VLQ
Sbjct: 71 LLKVSVNITKFSKTERSKTSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG +N TLALIDAGI M +Y+ S L TPL++++ LEE + ++T+
Sbjct: 131 QDGGLVGTLINGITLALIDAGIAMFDYISGVSVGLYDTTPLLEVNSLEENVMS-SVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ + K++++ + K+ LD L VL + G + ++D+ +++
Sbjct: 190 VGKTEKLSLLLVEDKIPLDRLESVLAIGIAGAHRVRELMDSELRK 234
>gi|443708056|gb|ELU03350.1| hypothetical protein CAPTEDRAFT_146569, partial [Capitella teleta]
gi|443726159|gb|ELU13440.1| hypothetical protein CAPTEDRAFT_126626, partial [Capitella teleta]
Length = 123
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-GPN 182
+VLQ+DGGN+C VNAATLALIDAGIPM++YV ACSAS DT L+DI++LEE+ G
Sbjct: 1 QVLQSDGGNYCCSVNAATLALIDAGIPMKDYVCACSASFIKDTALLDINYLEESSGRSAE 60
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
L VA LP +V ++E+ +LH DHL +VLD A+KGC D++AILD A+++H+ + +
Sbjct: 61 LVVATLPKWDQVVLLEMDGRLHEDHLNKVLDTAVKGCKDVYAILDAAVREHVTETTASLS 120
Query: 243 L 243
L
Sbjct: 121 L 121
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 1/243 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R+DGRR +ELR I + +DG A I G T+V +V+GPR + +S +H
Sbjct: 11 GGYRSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++N + ++ FSTGER+ R R DR+ E++ ++ + + ++PR+QIDIFV V Q
Sbjct: 71 VLNVEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG AC+N TLAL AG+P+ ++V A SA + G L+D+S LEE P+ VA L
Sbjct: 131 DGGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEEG-DLPHAAVAVL 189
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQ 248
P + KV + L +LH+D V A IHA + A++ ++ A G G +
Sbjct: 190 PRTKKVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMRRAVRTRTQELVAAMGAGPRAG 249
Query: 249 LGQ 251
G+
Sbjct: 250 PGE 252
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 93/131 (70%), Gaps = 2/131 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++LLT GLR DGRR +ELRKI + VFSQ+DGSAYIEQGNTK LAAVYGPR VR++
Sbjct: 4 LELLTP--EGLRVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHR 61
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +IN ++++A FST ERK R + D+++ E++ +RQ +++ PRSQID
Sbjct: 62 MQALSDRAIINVEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQID 121
Query: 121 IFVEVLQADGG 131
I+++V Q DGG
Sbjct: 122 IYLQVFQNDGG 132
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 15/234 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSI---KVHG 66
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP P R
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQTKEA 72
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+V +N +A FS+ +R+ R R D++T E+ + +AVSA + + + P S I I + VL
Sbjct: 73 AVTVNL--VVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHVL 130
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDISHLEETL 178
DG A +NA+TLALIDAGIPM +Y+ AC+A G PL+D++ EE
Sbjct: 131 SQDGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQ- 189
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P +TV L L+ +VAV+ ++ + L +L + GC + +D +K+
Sbjct: 190 ELPYMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVKE 243
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 142/251 (56%), Gaps = 3/251 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
+D+L + GG R+DGRR +ELR I + +DG A I G T+V +V+GPR + +
Sbjct: 15 VDILND--GGYRSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQR 72
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S +H ++N + ++ FSTGER+ R R DR+ E++ ++ + + ++PR+QID
Sbjct: 73 SQTLHDRAVLNVEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQID 132
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IFV V Q DGG AC+N TLAL AG+P+ ++V A SA + G L+D+S LEE
Sbjct: 133 IFVSVQQQDGGLLPACINGTTLALAAAGVPLLDFVCAVSAGVHGAAALLDLSALEEG-DL 191
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
P+ VA LP + +V + L +LH+D V A IHA + A++ ++ A
Sbjct: 192 PHAAVAVLPRTKRVTLAALETRLHVDRFAEVFRLACDAGQTIHAEMRRAVRTRTQELVAA 251
Query: 241 RGLGRKFQLGQ 251
G G + G+
Sbjct: 252 MGAGPRAGPGE 262
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C + + +DGS+Y+EQGN K++ V GP +S
Sbjct: 11 GLRLDGRRWNELRRFECSINTHPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ +M F+ ER KT + +R+ E+ L + +M +++PR+ ID+ V VLQ
Sbjct: 71 TLTVTVNMTKFAAAERSKTGHKNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQVHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M EY+ S L TPL+D++ LEE T+
Sbjct: 131 NDGGVLGSMINGITLALIDAGIAMYEYISGISVGLYDTTPLLDLNRLEEQ-AMSCFTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L V+ + G + ++D ++QH
Sbjct: 190 VGKSEKLSLLLVEDKVPLDRLESVMSLGIAGTHRVRDMMDKVLRQH 235
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 135/235 (57%), Gaps = 13/235 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS----IKVHG 66
LR DGRR +ELR+++ ++ + +DGS+Y+E GNTKV+ V GP R + + G
Sbjct: 13 LRLDGRRWNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRRQGGAAGAQRDG 72
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
I + A FS ERK R RGD++T+E+ L QA ++ + ++ +P S I I + +L
Sbjct: 73 EAKIEVEIGFAGFSGIERKRRGRGDKRTAEMQHTLVQAFASTLHTQRYPHSTISISLHIL 132
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD--------TPLVDISHLEETL 178
DG AC+NAATLAL+DAGIPM +Y+VAC+A PL+D+++LEE
Sbjct: 133 SQDGSLLAACLNAATLALVDAGIPMSDYLVACTAGSTASYSANDEQADPLLDLNNLEEQ- 191
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P LTV L +++V+ + K+ + L +L + GC + ILD ++ H
Sbjct: 192 ELPFLTVGCLGQKEEISVLVMESKVQMTRLEAMLAVGVDGCKRVRDILDGVVRAH 246
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 126/214 (58%), Gaps = 1/214 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR E+R + ++GV S +DGSA + G TKVLAAVYGPR K +
Sbjct: 12 NGRRLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRA 71
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ +Y MA FST ERK+ P R+ EIS LR+A+ +++E+ PR+ I+++VEVLQ+
Sbjct: 72 SLFVRYHMAPFSTEERKS-PVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQS 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG A AA+LAL DAGIPMR V + + ++D++ E+ G ++ V A
Sbjct: 131 DGGTRTASATAASLALADAGIPMRALVAGVAIGKVDNVVVLDLNEPEDNFGEADMPVVAA 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
P G + + +L+ + ++ + LD ALK +++
Sbjct: 191 PDLGLITLFQLNGVMTVEETQKGLDMALKAISEL 224
>gi|340924044|gb|EGS18947.1| hypothetical protein CTHT_0055610 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 284
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 136/256 (53%), Gaps = 41/256 (16%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRN-------- 59
LR DGRR +ELR++ ++ + +DGS+Y+E G+TKV+ V GP P R
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGTGAGTTGG 72
Query: 60 ---------------KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQA 104
K +V S++I A FS+ +RK R D++ E+ + A
Sbjct: 73 GGAGGAGGGGSGGQGKEAEVVVSIVI------AGFSSVDRKRHGRNDKRIIEMQSTVANA 126
Query: 105 VSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS--- 161
+SA++ + + P SQI I + VL DG A +NAATLA +DAGIPM +YVVAC+A
Sbjct: 127 LSASLHTHLFPHSQITISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVVACTAGSTS 186
Query: 162 --LAGDT---PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCAL 216
A D PL+D++H EE P LTVA L S KVAV+ ++ + L +L +
Sbjct: 187 TYAANDENADPLLDLNHQEEQ-ELPWLTVATLGESDKVAVLVCESRVQVSRLEGMLAVGV 245
Query: 217 KGCADIHAILDTAIKQ 232
GC I AILD ++Q
Sbjct: 246 DGCKQIRAILDHVVRQ 261
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ C + + SDGS+Y+EQGN KV+ V GP+ KS
Sbjct: 11 GLRQDGRRWNELRRFDCSINTHAHTSDGSSYLEQGNNKVITIVKGPQEPPLKSQLDQTKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+N ++ FS ER KT+ + +++ E+ L + I+ ++PR+ IDI + VLQ
Sbjct: 71 TLNISLNITPFSKFERSKTQHKNEKRILELQTILIKTFKKNILMHLYPRTLIDIQIHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DG +N TLALIDAGI + +++ S L +TPL+D++ EE + ++T+
Sbjct: 131 QDGSLLSCLINGITLALIDAGIAIYDFISGISIGLFNETPLLDLNSQEEIVMS-SVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + KL LD + VL + G I ++D +K+H
Sbjct: 190 VGNSEKLSLLFIEDKLPLDIMENVLAIGIAGAHRIKDLMDIELKRH 235
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 4/227 (1%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D R+ ELR + G+ + GSA + GNT+ +AAVYGP V+ + I+ +I
Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNKGIIV 64
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y M FS +R RP DR+ EIS + A++ A++ E PR+ +++ + + QAD G
Sbjct: 65 CKYDMLPFSVPDR-ARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQADAG 123
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL---GGPNLTVAAL 188
CA + AA++A DAG+PMR+ V A +A GD+ +D++ EE G ++ +A L
Sbjct: 124 TRCASLTAASMACADAGLPMRDLVAAVAAGKIGDSICLDLTKEEEDFHEGGATDVPIALL 183
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
P ++ +++L K+ + L +V++ KG +I+ + A+K+ +
Sbjct: 184 PSKNEIVLLQLDGKVTREELKKVIEMGKKGAMEIYELEKAALKRRFL 230
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 22/242 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
LR DGRR +ELR++ ++ + +DGS+Y+E G+TKV+ V GP + V G+
Sbjct: 13 LRVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGG 72
Query: 70 ------------INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
I +A FS+ +RK RGD++T E++ + A++A++ + + P S
Sbjct: 73 GGGGGGAGGKAEIVVGIVIAGFSSVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHS 132
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLV 169
QI++ + VL DG A +NAATLA +DAGIPM +YV AC+A G PL+
Sbjct: 133 QINVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLL 192
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
D++H EE P LTVA L S +VAV+ ++ + L +L + GC + ILD
Sbjct: 193 DLNHQEEQ-ELPGLTVATLGESDRVAVLVCESRVQVSRLEGMLAVGVDGCKQMREILDRV 251
Query: 230 IK 231
++
Sbjct: 252 VR 253
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 9/229 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELRK + + SDGS+Y+EQGN K+ V GPR +S
Sbjct: 11 GLRLDGRRWNELRKFDASINTHAHLSDGSSYLEQGNNKIFTLVKGPREPSQRSQLDQSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+N ++ FS ER K + +R+T EI L + +M + +PR+ IDI + VLQ
Sbjct: 71 TLNVTVNITRFSKFERSKASHKNERRTLEIQTSLVRTFEKNLMLQNYPRTVIDIEIHVLQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLA IDAGI M +Y+ S L PL+DI+ LEE ++ A
Sbjct: 131 QDGGLVGSLINGITLACIDAGIAMYDYISGVSVGLYDTVPLLDINSLEENA----MSCAT 186
Query: 188 LPLSG---KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
L + G K++++ + K+ LD L VL + G I ++D +++H
Sbjct: 187 LGVVGKTEKLSLLLVEDKIPLDRLENVLAIGIAGAHRIRDLMDQELRRH 235
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 5/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS 67
GLR DGRR +ELR+ + + + S DGS+Y+EQGN KV+ V GP P + +
Sbjct: 11 GLRLDGRRWNELRRFQASISTHAHSADGSSYLEQGNNKVVTLVRGPGEPASRGQLDGQRA 70
Query: 68 VLINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
L ++ FS ER +T R +R+ EI LR+ A + ++PR+ ID+ + VL
Sbjct: 71 TL-RVSVNVTKFSKFERSRTSHRNERRVLEIQTSLRRTFEKACLLHLYPRTAIDVELHVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A +N TLAL+DAG+ M +YV S L TPL+D + LEET +T+
Sbjct: 130 EQDGGVLGAMINGITLALVDAGVAMWDYVAGVSVGLHDQTPLLDCNSLEET-AVSTVTLG 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ + K+++M + K+ LD + VL + G I ++D +++H
Sbjct: 189 VVGKTEKLSLMVVEDKIPLDRMENVLAIGIAGAHRIRDLMDQELRKH 235
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 132/236 (55%), Gaps = 14/236 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--- 67
LR DGRR +ELR++ ++ + +DGS+Y+E GNTKV+ V GP + + ++ G+
Sbjct: 13 LRLDGRRWNELRRLTAQMRTQAAADGSSYLEMGNTKVICTVAGPSEGKAGTGQMGGARDR 72
Query: 68 VLINFQYSMAVFSTGERKT--RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ S+A FS +RK RGD++ +E+ + A + +++ ++P S I + + +
Sbjct: 73 ATVDVTISVAGFSGVDRKRGGAGRGDKRLAEMQTTISTAFAQTLLTHLYPHSSIALSLHI 132
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD--------TPLVDISHLEET 177
L DG AC+NA+TLAL+DAGIPMR Y+ AC+A PL+D++ EE
Sbjct: 133 LSQDGSLLAACINASTLALVDAGIPMRGYICACTAGSTSSYSSNDERADPLLDLNAAEEQ 192
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
P LTVA + S V+V+ + ++ L +L + GC + ILD +++
Sbjct: 193 -ELPFLTVATVAGSDDVSVLVMETRVQAGRLEGMLTVGVSGCMQVREILDKVVRER 247
>gi|209882995|ref|XP_002142931.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209558537|gb|EEA08582.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 250
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 132/231 (57%), Gaps = 7/231 (3%)
Query: 10 GLRNDGRRGHELRKIRCRL--GVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R DGRR +E+R+I C++ G + SD S Y EQG TK++ ++ GP P+ N S +
Sbjct: 15 GFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGIQ 74
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ NF+ M+ F T +R+ R + DR +E SL + + +AI SE++ +SQI I + VL+
Sbjct: 75 LHCNFR--MSPFCTPDRRKRGKNDRFCTENSLIITRTFESAI-SEIYVKSQIIININVLE 131
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
ADGG A +NA +LAL +AGI M++ V++ + L G PL DI E + ++ A
Sbjct: 132 ADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGRIPLYDIVQAEFDVLKTIMSFAI 191
Query: 188 LPLSGKVA--VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+A MEL+ K+ D L +L+ + C I IL ++QH I+
Sbjct: 192 YSTDENIAPITMELNTKVDEDILNLLLEHSAAACKHISKILRNILRQHAIR 242
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR C + + +DGS+Y+EQGN K++ V GP+ ++S
Sbjct: 11 GLRVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ ++ F+ ER K+ + +R+T E L + +M ++PR+ ID+ V LQ
Sbjct: 71 TLSVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG A +N TLALIDAGI M ++V S L TPL+D++ LEE ++T+
Sbjct: 131 LDGGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDTTPLLDLNSLEEN-AMSSVTIGT 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L V+ + G I ++D +++H
Sbjct: 190 IGKSEKLSLLMVEDKVPLDRLESVMAIGIAGTHRIRDLMDKELRKH 235
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 6/232 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E R + + GV SQ+ GSAYIE TKV+ VYGPR G
Sbjct: 37 GKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPRQTPKTVYSEKGK-- 94
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N + +A F+ + + D++ E+S+ + QA+ ++ E P+S++D+FV VL+
Sbjct: 95 LNCFFKLATFAENGERRKYVSDKEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEES 154
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGI M + V +CS + L+D S EE NL VA +P
Sbjct: 155 GGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMP 214
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
+ ++ M + ++ P ++ L GC+ I+ ++ +Q+L++ A +
Sbjct: 215 SANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMM----RQNLLETAAQK 262
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 12/232 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--- 67
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
IN +A FS+ +RK R R D++ EI + A+S+ + + + P S I I + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDISHLEETLG 179
DG A +NA TLALIDAGIPM +Y+ AC+A AGD PL+D+++ EE
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQ-E 191
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P LTVA + +VAV+ ++ + L +L + GC + LD +K
Sbjct: 192 LPFLTVATHGDTDRVAVLVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 243
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 5/227 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGS 67
GLR DGRR +ELR+ + + DGS+Y+EQGN KV+ V GP+ P + + +
Sbjct: 11 GLRLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKA 70
Query: 68 VLINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+L ++ FS ER K+ + +R+ E+ L + +M V+PR+ IDI + VL
Sbjct: 71 IL-KVTVNITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHVL 129
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
Q DGG +N +LALIDAGI M +YV S L TPL+DI+ LEE +T+
Sbjct: 130 QQDGGIMGTLLNGISLALIDAGIAMYDYVSGISVGLYDTTPLLDINSLEEN-AMSAVTLG 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++++ K+ LD + VL + G I +++ I+ H
Sbjct: 189 VVGKSEKLSLLQIEDKIPLDRIENVLAIGIAGAHRIRDLMEQEIRAH 235
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHGS 67
LR +GR+ E+R I+C+LGV + GSA E GNTKV+A + GP + + S+ V+ S
Sbjct: 13 LRMNGRKLLEIRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSLGVNQS 72
Query: 68 V--LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++N + + FS E + + D K E + ++ I +++PRSQ+D+ V V
Sbjct: 73 NRGILNVNFFVTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLDLQVFV 132
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
L++DGG A NA ++AL+D GI M+++VVA +A L G+ ++D+ + EE +
Sbjct: 133 LESDGGYRSAAFNAVSMALMDGGIAMKDFVVATTAGLLGNVGVIDLIYQEEKKQNCEFVL 192
Query: 186 AALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
L + K+A + L+ K+ L ++++ +++ C I + AI+ LI
Sbjct: 193 VHLQKAQKIAYVNLNCNKIRLSDFEKLMNISIQSCDQIANTMKKAIRAKLI 243
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 31/252 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
LR DGRR +ELR+ ++ + +DGS+Y+E GNTKV+ V GP + G+V
Sbjct: 13 LRIDGRRWNELRRCHAQIRTQAAADGSSYLEMGNTKVMCVVTGPSEPTPGQRRTAGNVTA 72
Query: 70 ---------------------INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA 108
+ +A FS+ +RK R R D++ E+ L +A+++
Sbjct: 73 TGAGGGGGGGGGGAGQSKDAEVVVSIFVAGFSSVDRKRRARSDKRIQELQATLSRALAST 132
Query: 109 IMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LA 163
+ + + P S I + VL DG A +NAA+LA +DAGIPM +YV AC+A A
Sbjct: 133 LHTHLFPHSTITFSLHVLAQDGSLLAALINAASLAAVDAGIPMIDYVAACTAGSTSSYAA 192
Query: 164 GD---TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCA 220
GD PL+D++H EET P LTVA L S +V V+ ++ L +L A+ GC
Sbjct: 193 GDDSADPLLDLNHQEET-ELPGLTVATLGSSDRVVVLNCESRVQASRLEGMLAVAVDGCK 251
Query: 221 DIHAILDTAIKQ 232
+ ILD +++
Sbjct: 252 QMREILDRVVRE 263
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ R DGRR +ELR++ C+ SDG + QGNTKV+A+V GPRP R K
Sbjct: 226 FYNNRRIDGRRTNELRRVFCQFQT-GNSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPD 284
Query: 67 SVLINFQYSMAVFST--GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y+ FS+ GER+ DR TS+ + + + S + E +P SQIDIF+E
Sbjct: 285 EATLVCKYNKPPFSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLE 344
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
VLQ+DG F VNAATLAL DAGI MR A + + G D+ EE P LT
Sbjct: 345 VLQSDGSEFACAVNAATLALTDAGIEMRSLACAATVGMWGPHLFADLCRFEENPRIPQLT 404
Query: 185 VAAL 188
+ L
Sbjct: 405 MVCL 408
>gi|367019368|ref|XP_003658969.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
gi|347006236|gb|AEO53724.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
Length = 279
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 33/256 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKV--- 64
LR DGRR +ELR++ ++ + +DGS+Y+E G+TKV+ V GP P R +
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGGAG 72
Query: 65 -----------HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEV 113
V++ +A FS+ +RK R D++T E++ + A++A++ + +
Sbjct: 73 GGGAGAGGTGGKAEVVVGI--VIAGFSSVDRKRHGRNDKRTLELASTVANALAASLHTHL 130
Query: 114 HPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GD 165
P SQI+I + VL DG A +NAATLA +DAGIPM +YV AC+A G
Sbjct: 131 FPHSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGA 190
Query: 166 TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
PL+D++H EE P LTVA L + +VAV+ ++ + L +L + GC + I
Sbjct: 191 DPLLDLNHQEEQ-ELPGLTVATLGETDRVAVLVCESRVQVSRLEGMLAVGVDGCKQMREI 249
Query: 226 LDTAIKQHLIKVAGAR 241
LD H+++ G R
Sbjct: 250 LD-----HVVRDKGRR 260
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 13/233 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV----HG 66
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPRD 72
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ IN +A FS+ +RK R R D++ EI + A ++ + + + P S I I + VL
Sbjct: 73 TAAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHVL 132
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDISHLEETL 178
DG A +NA TLALIDAGIPM +Y+ AC+A AGD PL+D+++ EE
Sbjct: 133 SQDGSLLAALLNATTLALIDAGIPMTDYIAACTAGSTSTYAAGDDTADPLLDLNNQEEQ- 191
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P LTVA + +VAV+ ++ + L +L + GC + LD +K
Sbjct: 192 ELPFLTVATQGDTDQVAVLVCESRVQVSRLEGMLVVGVDGCKQVKQFLDQVVK 244
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 25/246 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV----RNKSIKVHG 66
LR DGRR +ELR+ ++ + +DGS+Y+E G+TKV+ V GP R + +
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 67 SVL------------INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ + +A FS+ +RK R RGD++ E+ + A+SA + + +
Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGDT--- 166
S I + VL DG A +NAATLA +DAGIPM +YVVACSA A D
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 167 PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
PL+D++ EET P LT A L + +V V+ ++ L +L A+ GC + IL
Sbjct: 193 PLLDLNQQEET-ELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 227 DTAIKQ 232
D +K+
Sbjct: 252 DRVVKE 257
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 133/232 (57%), Gaps = 10/232 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSVL 69
LR DGRR +ELR+I ++ + +DGS+Y E GNTK++ V GPR R S
Sbjct: 13 LRVDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQQTRGGGRDQSRSAS 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I + +A FS +RK R R D++T E+ + A ++ I++ ++P+S I I + VL D
Sbjct: 73 IEVEIGIAGFSGMDRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLHVLSQD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVAC----SASLAGD----TPLVDISHLEETLGGP 181
G AC+NAATLALIDAGIPM++YV AC +AS A + PL+D++ +EE L P
Sbjct: 133 GALLAACLNAATLALIDAGIPMKDYVAACTTGSTASYASNDEEADPLLDLNGMEE-LELP 191
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
LT+ K+ V+ + ++ + + ++ L GC + +LD ++ H
Sbjct: 192 FLTIGTSGGEDKINVLIMETRVQVARMEAMVTVGLDGCKQVRQLLDQVVRNH 243
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 25/246 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV----RNKSIKVHG 66
LR DGRR +ELR+ ++ + +DGS+Y+E G+TKV+ V GP R + +
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 67 SVL------------INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
+ + +A FS+ +RK R RGD++ E+ + A+SA + + +
Sbjct: 73 TATGGGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGDT--- 166
S I + VL DG A +NAATLA +DAGIPM +YVVACSA A D
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 167 PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
PL+D++ EET P LT A L + +V V+ ++ L +L A+ GC + IL
Sbjct: 193 PLLDLNQQEET-ELPGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 227 DTAIKQ 232
D +K+
Sbjct: 252 DRVVKE 257
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 40/264 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-----------RPVRN 59
LR DGRR +ELR++ ++ +DGS+Y E G+TKV+ V GP R
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQ 72
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGD------------------RKTSEISLQL 101
S + S+++N +A FS+ +RK R R D R+T EI + +
Sbjct: 73 ASGRDAASIIVNV--VIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITI 130
Query: 102 RQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS 161
+A+S+ + + + P S I + + VL DG A +NAATLA+IDAGIPM +Y+ AC+A
Sbjct: 131 AKALSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDYIAACTAG 190
Query: 162 -----LAGD---TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLD 213
AGD PL+D+++ EE P LTVA+L S +V + ++ + L +L
Sbjct: 191 STSSYAAGDDSADPLLDLNNQEEQ-ELPFLTVASLGDSDRVVALVCESRVQVSRLEGMLV 249
Query: 214 CALKGCADIHAILDTAIKQHLIKV 237
L GC + LD IK +K+
Sbjct: 250 VGLDGCKQVKMFLDKTIKDRGVKM 273
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 38 AYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEI 97
+Y+E GNTKV+ +V GP R S + + A FS +RK R + D++ E+
Sbjct: 69 SYVEHGNTKVICSVNGPIEPRAASARNSERATVTVDVCFAAFSGTDRKKRGKSDKRVLEM 128
Query: 98 SLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVA 157
L + + +++ +HPRS++ I + +L DG CVNAATLAL+DAG+PM +YV A
Sbjct: 129 QSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILATCVNAATLALVDAGVPMSDYVTA 188
Query: 158 CSASLAGDT-----PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVL 212
C+ + + PL+D+S EE + P +T+A + S K+++++L K+ L+ L +L
Sbjct: 189 CTVASYTNPDESGEPLLDMSSAEE-MDLPGITLATVGRSDKISLLQLETKVRLERLEGML 247
Query: 213 DCALKGCADIHAILDTAIKQHLIKVA 238
+ GC I +LD I++H K+A
Sbjct: 248 AVGIDGCGKIRQLLDGVIREHGNKMA 273
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 5/227 (2%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D R +ELR + GV + GSA GNT+ +AAVYGP V+ + I+ +I
Sbjct: 5 RFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDRGVIV 64
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+Y M FS +R +P DR+ EIS + A++ AI+ E PR+ I++ V + QAD G
Sbjct: 65 CKYDMLPFSVPDR-AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAG 123
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL----GGPNLTVAA 187
CA + AA++A DAG+PMR+ V A +A GD +D+S EE G ++ +A
Sbjct: 124 TRCASLTAASMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAF 183
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
LP ++ +++L ++ D L +V++ +G I+ + A+K+
Sbjct: 184 LPSKNEILLLQLDGRVSRDELKKVIEVGKEGAMKIYELEKEALKRRF 230
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
R DGR+ +ELRK+ C LG +GS + QG T+++ + GP NKS + +
Sbjct: 11 FREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPH---NKSTRRESEGFL 67
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
N QY++A FS +R+ + D+ +E + LR + + I++E +IDI V V+QADG
Sbjct: 68 NVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQADG 127
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
+ NA +LAL+DAGIPM+++ V+ + L+D ++ E+ L ++ LP
Sbjct: 128 SAKSSIFNAISLALMDAGIPMKDFTVSSTVISLNSEILLDATYQEQKKASAELIISYLPR 187
Query: 191 SGKVAVMEL-SQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
S +V ME+ S K+ + A+ GC ++ IL T + + +K
Sbjct: 188 SDQVDFMEMKSSKISQQDTKEMCKIAVDGCKQMYQILRTFVLESSVK 234
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 99/182 (54%), Gaps = 3/182 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR +ELR++ C+ G SDG ++ QGNTKV+A+V GP R K
Sbjct: 1 GRRVDGRRPNELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGAT 59
Query: 70 INFQYSMAVF--STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
I Q++ F ++GER+ DR ++ S + + S + +E +P SQIDIF+EV+Q
Sbjct: 60 IICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
+DG F VNA TLAL DAGI M V A + L G D+ EE LTV
Sbjct: 120 SDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLWGSRVFADLCRFEENPRLSQLTVVC 179
Query: 188 LP 189
LP
Sbjct: 180 LP 181
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 136/243 (55%), Gaps = 19/243 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-- 68
LR DGRR +ELR+I+ ++ + +DGS+Y E GNTKV+ V+GPR +S + G
Sbjct: 13 LRIDGRRWNELRRIQGQMSTQAAADGSSYFEMGNTKVMCTVHGPR----QSARSGGGTRE 68
Query: 69 -LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
I + +A FS ERK R R D++T E+ + A S + + +P S I I + VL
Sbjct: 69 ATIEVEIGVAGFSGTERKKRARADKRTQEMQHSISSAFSDTVFTAFYPSSTITIVLHVLS 128
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACS----ASLAGDT----PLVDISHLEETLG 179
DG AC+NAATLAL+DAG+PM +Y+ AC+ AS A + PL+D++ EE L
Sbjct: 129 QDGALLAACLNAATLALVDAGVPMTDYIAACTTGSTASYASNDEDADPLLDLNGAEE-LE 187
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH---LIK 236
P LT+ KV V+ + ++ L ++ L GC + +ILD +++H L+K
Sbjct: 188 LPFLTMGTSGGEDKVNVLIMETRVQATRLESMVSVGLDGCKQVRSILDGIVREHGRRLLK 247
Query: 237 VAG 239
G
Sbjct: 248 TKG 250
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 18/238 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK------- 63
LR DGRR +ELR++ + +DGS+Y+E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHALIRTQDAADGSSYLEIGHTKVMCVVSGPSEQQQQQQAQRRGGQA 72
Query: 64 --VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
++ +A FS+ +RK R R D++ E+ + + +A S+ + + + P S I I
Sbjct: 73 NATRDGATVHVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKAFSSNLHTHIFPHSSIAI 132
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDISH 173
+ VL DG A +NA TLAL+DAGIPM +Y+ AC+A AGD PL+D++
Sbjct: 133 SLHVLSQDGSLLAALLNATTLALVDAGIPMTDYIAACTAGSTSSFAAGDDAADPLLDLNT 192
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
EE P LTVA L S +VAV+ ++ + +L + GC + LD+ +K
Sbjct: 193 QEEQ-ELPYLTVATLGGSDRVAVLACESRIQVSRFEGMLVVGVDGCKQVKKFLDSVVK 249
>gi|156320322|ref|XP_001618165.1| hypothetical protein NEMVEDRAFT_v1g225439 [Nematostella vectensis]
gi|156197791|gb|EDO26065.1| predicted protein [Nematostella vectensis]
Length = 122
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 82/108 (75%)
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
VLQADGGN AC+NA TLALI+AGIP+++YV AC+ S DTPL+DI++LEE+ GGP LT
Sbjct: 1 VLQADGGNHVACINAVTLALINAGIPLKDYVSACTVSFVNDTPLMDINYLEESTGGPQLT 60
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+A LP S K+ + ++ +LH+D++ +VL A+KGC DI+ +L I +
Sbjct: 61 LAILPKSDKIVLFQMDSRLHMDNMDKVLALAMKGCKDIYVLLHRTILE 108
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 136/255 (53%), Gaps = 32/255 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV------ 64
LR DGRR +ELR+ + + +DGS+Y+E GNTKV+ + GP V ++
Sbjct: 236 LRVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGG 295
Query: 65 ----------HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
V++N +A FS+ R+ R R D++T E++ + + ++A + + ++
Sbjct: 296 GGGGGGGDAKDAEVIVNI--VVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLY 353
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVV--------ACSASLAGDT 166
PRS I I + VL DG A +NAATLA +DAGIPM +YVV + +A+
Sbjct: 354 PRSTITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSSSSYAAADDAAD 413
Query: 167 PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
PL+D+ +L+E P LTVA L S +VA + ++ L +L A+ GC + AIL
Sbjct: 414 PLLDL-NLQEEQELPGLTVATLGASDRVAALVCESRVQAGRLEGMLAVAVDGCKQVRAIL 472
Query: 227 DTAIKQHLIKVAGAR 241
D +++ AGAR
Sbjct: 473 DKVVRE-----AGAR 482
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 11/232 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHG-SV 68
LR DGRR +ELR+++ ++ +DGS+Y+E G+TKV+ V GP P R
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N +A FS+ +R+ R D++ SE+ + +A ++ + + + P S I I + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDISHLEETLGG 180
DG A +NA TLAL+DAGIPM +Y+ AC+A G PL+D++ EE
Sbjct: 133 DGSLLAALLNATTLALVDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQ-EL 191
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P LT A L S KV V+ ++ L +L A+ GC I LD +K+
Sbjct: 192 PFLTAATLGDSDKVVVLVCESRVQASRLEGLLAVAVDGCKQIRGKLDAVVKE 243
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 1/224 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ E+R + GV +DGSA + G +AAVYGP + I+ +
Sbjct: 14 GLRLDGRKIDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKIQRQDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I+ +Y+MA FST +R RP +R++ EIS +A+ + ++ E +PRS+I + +E+L A+
Sbjct: 74 IDVRYNMAPFSTSDR-IRPGYNRRSREISKVTAEALESVVLVERYPRSKIRVEIEILAAE 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G CA + AA +AL DAGIPMR+ +V ++ T ++D+ E+ G +L V LP
Sbjct: 133 AGTRCAGLTAAAVALADAGIPMRDLIVGVASGKVEGTVVLDLDKAEDNYGQADLPVGILP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+G++A +++ L D ++ K A+IH I+ A+K+
Sbjct: 193 NTGEIAFLQMDGDLSPDEYNLAMEYNFKAAAEIHEIMVDALKRR 236
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 1/222 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +LR I +GV + GSA + G V+AAVYGP + I +
Sbjct: 14 GRRMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
++ +Y+MA FST +R RP +R++ EIS A+ + ++ E++PRS+I + +E+L A+
Sbjct: 74 LDVRYNMAPFSTTDR-IRPGFNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILCAE 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G C + AA++AL AGIPM + VV+ ++ + D++ E+ G +L + LP
Sbjct: 133 AGTRCVGLTAASVALAHAGIPMTDMVVSVASGKINGVVICDLNKEEDNYGEADLPMGMLP 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
SG + +++ L D + D ++ +H I+ A+K
Sbjct: 193 NSGDLVFLQMDGDLSPDEFQQAWDYNMEAGLAVHEIMVQALK 234
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G R DGRR +E+R++ C+ G SDG ++ QGNTKV+A+V GP R K
Sbjct: 5 FYNGRRVDGRRPNEIRRVDCQFGS-GYSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPD 63
Query: 67 SVLINFQYSMAVF--STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
I Q++ F ++GER+ DR ++ + + + S I +E +P SQIDIF+E
Sbjct: 64 GATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLE 123
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
V+Q+DG F VNA TLAL DAGI M V A + L G D+ EE LT
Sbjct: 124 VIQSDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSHVFADLCRFEENPRISQLT 183
Query: 185 VAALP 189
V LP
Sbjct: 184 VVCLP 188
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 9/232 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI------- 62
G R DGRR +ELR + ++G +DGSA ++QG TKV+A V+GPRP++ S+
Sbjct: 12 GFRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTM 71
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
G ++N Y + F+T +RK R GDR ++E L L++ + A+++E+ P+S ID+
Sbjct: 72 ARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVH 131
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLE-ETLGG 180
+ +LQ DG ACVNAA AL+DAGIP+++ AC+ L + P+VD++H E E GG
Sbjct: 132 LTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEGCGG 191
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+TVA ++ + L K++++ D A++G + T I++
Sbjct: 192 AVVTVAVYQRRKELNYLCLEGKINIESFESAADLAIEGAVTAVRAMRTFIQE 243
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 13/234 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK------V 64
LR DGRR +ELR++ + +DGS+Y+E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHALIRTQDAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQANAS 72
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+N +A FS+ +RK R R D++ E+ + + +A+S+ + + + P S I I +
Sbjct: 73 RDGATVNVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISISLH 132
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSA----SLAG---DTPLVDISHLEET 177
VL DG A +NA TLALIDAGIPM +Y+ AC+A S A + + +E
Sbjct: 133 VLSQDGSLLAALLNATTLALIDAGIPMNDYIAACTAGSTSSFAAGDDLADPLLDLNNQEE 192
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P LTVA L S ++AV+ ++ + +L + GC + LD+ +K
Sbjct: 193 QELPYLTVATLGDSDRIAVLACESRVQVSRFQGMLVVGIDGCKQVKKFLDSVVK 246
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G+R DGRR +ELR+ + + +DGS+Y+EQGN K++ V GP+ +S
Sbjct: 11 GIRIDGRRWNELRRFDYSINTHPNAADGSSYLEQGNNKIITLVKGPQEPNLRSQVNSNKG 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ ++ FS ER + R +R+T E+ L + IM +++ R+ IDI + V+Q
Sbjct: 71 TLTVTVNITKFSDIERSQAGHRNERRTLELQTALVRTFEKNIMLQLYSRTVIDIQIHVIQ 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG A +N TLALIDAGI M +Y+ S L TPL+D++ LEE ++T+A
Sbjct: 131 KDGGLLGAMINGITLALIDAGIAMYDYISGVSVGLYDTTPLLDLNALEEN-ALSSVTLAV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L V+ + G I ++D ++ H
Sbjct: 190 VGKSEKLSLLLVEDKVPLDRLESVMAIGIAGSHRIRDLMDKELRLH 235
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHG-SV 68
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP P R
Sbjct: 317 LRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPSEPQRRGGAGGQTKDA 376
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N +A FS+ +R+ R R D++ E+ + +AV+A + + + P S I I + VL
Sbjct: 377 AVNVNIVVAGFSSVDRRKRGRNDKRNQELEAAIAKAVAANLHTHLFPHSSISISLHVLSQ 436
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDISHLEETLGG 180
DG +NA+TLALIDAGIPM +Y+ AC+A G PL+D++ EE
Sbjct: 437 DGSLLATLLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPLLDLNTQEEQ-EL 495
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P LTV L L+ +VAV+ ++ + L +L + GC + +D +K+
Sbjct: 496 PYLTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRVVKE 547
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 127/246 (51%), Gaps = 38/246 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKV--- 64
LR DGRR +ELR+I ++ + +DGS+Y+E G+TKV+ V GP P R +
Sbjct: 13 LRVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGG 72
Query: 65 -----HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ V +N +A FS+ +RK R RGD + + + P S I
Sbjct: 73 GGQSKNAEVAVNI--VIAGFSSVDRKRRGRGDN----------------LHTHLFPHSTI 114
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTPLVDI 171
+I + VL DG A +NAATLA +DAGIPM +YV AC+A G PL+D+
Sbjct: 115 NISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAANDEGADPLLDM 174
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H EE P LTVA L S +VAV+ ++ + L +L + GC + ILD ++
Sbjct: 175 NHQEEQ-ELPGLTVATLGDSDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVREILDRVVR 233
Query: 232 QHLIKV 237
+ IK+
Sbjct: 234 EKGIKM 239
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 6/228 (2%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G S DGS I G +KV A+++GPR +K H V
Sbjct: 11 AGLRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R R + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG AC+NAA LAL+DA + MR+ V S L + L+D+++ E P + VAA
Sbjct: 131 DGNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLANDELRSQCP-VIVAAF 189
Query: 189 P--LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+ + +E + +L D + R+L CA +G + + +T I++ L
Sbjct: 190 TGHDTQNIIWLETTSRLPPDSVARLLKCAEQGAQE---LFETTIRKSL 234
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG R DGR+ ELR I L +DGSA + G T V V+GPR +N+S +H
Sbjct: 10 GGYRADGRKARELRSITIELSPHPTADGSATVSHGLTTVNVCVFGPREAKNRSQTMHDKA 69
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
LIN + S A G + +SL+ + + R VLQ
Sbjct: 70 LINVEISEAPGGVG------------TNVSLKADPRICCFYSRNIRARR------PVLQQ 111
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DGG +NAATLALIDAGI + +YV AC+A+ T L+D+++ EE+ PNLT+A L
Sbjct: 112 DGGVLQTAINAATLALIDAGIALTDYVCACTAACIDTTGLLDLTNTEES-DLPNLTLAVL 170
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
P S +V ++ + +LH++ ++ AL +H + AI++ K+ + +G
Sbjct: 171 PRSKRVTLVTMETRLHVERFDQIFKLALLAGDILHERMRAAIRERTGKLVQSMTVG 226
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 134/249 (53%), Gaps = 30/249 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-----NKSIKVH 65
LR DGRR +ELR ++ ++ S GS+Y+ GNT +L +V+GP R S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 66 GSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G+V + ++A F++ +RK R G DR++ I+ LR A + + + ++P S I I V
Sbjct: 74 GAV-VEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVS 132
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG----------DT--PLVDIS 172
VL +DG A VNA TLAL+DAGIPM + C+A ++G DT PL+D+S
Sbjct: 133 VLSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPLLDVS 192
Query: 173 HLEETLGGPNLTVA-----ALPLSG-----KVAVMELSQKLHLDHLPRVLDCALKGCADI 222
L E P LTVA A+ G KV+++ + K+H ++ +L + GC +
Sbjct: 193 -LPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETMLAVGVDGCKQV 251
Query: 223 HAILDTAIK 231
ILD+ IK
Sbjct: 252 REILDSVIK 260
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 6/228 (2%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G S DGS I G +KV A+++GPR +K H V
Sbjct: 11 AGLRLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKV 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R + + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG AC+NAA LAL+DA + MR+ V S L + L+D+++ E P + VAA
Sbjct: 131 DGNEKVACINAACLALVDANVAMRDVVCCISVGLLDEHMLIDLANDELRSQCP-VIVAAF 189
Query: 189 P--LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+ + +E + +L D + R+L CA +G + + +T I++ L
Sbjct: 190 TGHDTQNIIWLETTSRLPPDSVARLLKCAEQGAQE---LFETTIRKSL 234
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 133/232 (57%), Gaps = 3/232 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+ + E G L DGR+ ELR+ + V ++GSA +E GNT+V+A+V+GP+ + K
Sbjct: 6 MEFIDEDGNRL--DGRKRDELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPK 63
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
++ +I +Y+MA FS +R RP +R+ EI L ++A++ A+ P + ID
Sbjct: 64 HLQEPDRAVIKMRYNMAPFSVDDR-MRPGPNRRAKEIGLVSKKALAPAVDLHEFPNAGID 122
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I +E++++DGG +NAA+LAL DAGIPM V AC+A + DT ++D+ E+ G
Sbjct: 123 ISMEIIESDGGTRVTGINAASLALADAGIPMEGLVSACAAGVVDDTVVLDVDGPEDKHGN 182
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ +A + +V ++++ + + + A GC ++H + A+ +
Sbjct: 183 ADIPIATVNGGEEVTLLQMDGDIPPGTVEEAVQLAETGCENLHRMQREALTE 234
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 10/239 (4%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
MD+ ++ G LR DGR +E+R + ++G GS++ + G T+V+A ++GPR N+
Sbjct: 1 MDVYNQFTG-LRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPR--DNR 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S + + F+Y A F+ + R+ E + +++ AI E+ P S+I
Sbjct: 58 SGDNAAEIRVTFEY--ADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKIL 115
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
I + V+Q DG A +NAATLALIDAGIPM ++VV+ + +L D +D E
Sbjct: 116 IAITVIQDDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALYDDKCFLDAGRAESNARF 175
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
P L V+ P + ++ M L+ ++ ++ A+ GC ++HAI+ Q +++VA
Sbjct: 176 PVLEVSIFPSTSEILSMNLTARIEPQASKNLMAAAIDGCKELHAIM-----QDVVRVAS 229
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 129/244 (52%), Gaps = 26/244 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV------ 64
LR DGRR +ELR+I ++ + +DGS+Y+E G+TKV+ V GP +
Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72
Query: 65 ---------HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
V++N +A FS+ +RK R RGD++T E+ L ++A + + + P
Sbjct: 73 GAGSGGQSKDAEVVVNI--VIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFP 130
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--------GDTP 167
SQI+I + VL DG A +NAATLA +DAGIPM +YV AC+A G P
Sbjct: 131 HSQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADP 190
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILD 227
L+D++H EE P LTVA L S KV + ++ + L +L + GC + ILD
Sbjct: 191 LLDLNHQEEQ-ELPGLTVATLGESDKVVALVCESRVQISRLEGMLAVGVDGCKQVREILD 249
Query: 228 TAIK 231
IK
Sbjct: 250 QVIK 253
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 120/234 (51%), Gaps = 8/234 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G S DGS I G +KV A+V+GPR +K H
Sbjct: 11 AGLRLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKA 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R R + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG AC+NAA LALIDA + MR+ V A + + L+D+++ E P V A
Sbjct: 131 DGNEKIACINAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCP---VIAA 187
Query: 189 PLSG----KVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQHLIKV 237
+G + +E + +L D R+L CA +G + + A+++H K+
Sbjct: 188 AFTGHDTRNIIWLETTSRLPPDSATRLLKCAEEGATKLFETTMRKALEEHARKI 241
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 15/236 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSVL 69
+R D + ++ CR G SQ+ GSAYIE NTK++ AVYGPR V + + + +V
Sbjct: 1 MRKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVA 60
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
++ A FS R+ R D + E S + QA+ + + +P+SQIDIF+ VLQ D
Sbjct: 61 CELKF--ATFSC-RRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQND 117
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE-----------ETL 178
G + AA++AL D+GI + + + C GD L+D ++LE E +
Sbjct: 118 GSVLGGAITAASVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIV 177
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
N+T+A LP +V+ + ++ +L +D R++ L+GC I+ ++ + + L
Sbjct: 178 TNANVTIALLPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTKSL 233
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--- 67
LR DGRR +ELR++ ++ +DGS+Y+E G+TKV+ V GP + +
Sbjct: 13 LRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDM 72
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
IN +A FS+ +RK R R D++ EI + A+S+ + + + P S I I + VL
Sbjct: 73 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLS 132
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVDISHLEETLG 179
DG A +NA TLALIDAGIPM +Y+ AC+A AGD PL+D+++ EE
Sbjct: 133 QDGSLLAALINATTLALIDAGIPMSDYIAACTAGSTSTYAAGDDNADPLLDLNNQEEQ-E 191
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHL 208
P LTVA + +VAV+ ++ + L
Sbjct: 192 LPFLTVATHGDTDRVAVLVCESRVQVSRL 220
>gi|356504159|ref|XP_003520866.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Glycine max]
Length = 207
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 37/221 (16%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR E+++IR +G S++DGS+ E GNT+V AAVYGPR V+N+S ++ L
Sbjct: 8 GLRLDGRXPMEMQQIRAEIGAVSKADGSSIFEMGNTEVTAAVYGPREVQNRSQQISSHAL 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +YS+A FSTG+R + +GDR+++EISL + Q + A I++ + P S V +
Sbjct: 68 VRCEYSLANFSTGDRMRKSKGDRRSTEISLVIXQTMEACILTHLLPHS------PVFKKL 121
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
C+ ++E++ GG ++T+ LP
Sbjct: 122 SKELITCIQTC-------------------------------PYVEDSAGGADVTLGILP 150
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
KV ++++ KL +D L V+ A++GC I L T +
Sbjct: 151 KLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIAIALITFV 191
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 21/239 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV--------RNKSI 62
LR DGRR +ELR I ++ + +DGS+Y E GNTKV+ V GPR R+++
Sbjct: 130 LRVDGRRWNELRCISGQMSTQAAADGSSYFEMGNTKVICTVVGPRQQTRSGGGGGRDQTK 189
Query: 63 KVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ I + +A FS +RK R R D++T E+ + A ++ + + ++P+S I I
Sbjct: 190 EAS----IEVEIGIAGFSGMDRKKRSRSDKRTQEMQYTISSAFASTVFTSLYPQSTISIV 245
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC----SASLAGDT----PLVDISHL 174
+ VL DG AC+NAATLALIDAG+PM++YV AC +AS A + PL+D++ L
Sbjct: 246 LHVLSQDGALLAACLNAATLALIDAGVPMKDYVAACTVGSTASYASNEEEADPLLDLNGL 305
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
EE P +TV V V+ + ++ + L +L L GC I +LD +++H
Sbjct: 306 EEQ-ELPFMTVGTSGGEDMVNVLIMETRVQMARLQAMLSVGLDGCKQIRQLLDGIVREH 363
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 8/234 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G S DGS I G +KV A V+GPR +K H
Sbjct: 11 AGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R + + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG ACVNAA LALIDA + MR+ V A + + L+D++ E P V A
Sbjct: 131 DGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTSNELRSQCP---VIAA 187
Query: 189 PLSG----KVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQHLIKV 237
+G + +E + +L D + R+L CA +G + A + A+++H K+
Sbjct: 188 AFTGHDTRNIIWLETASRLPPDSVTRLLKCAEEGATKLFEATMRKALEEHAKKI 241
>gi|367053159|ref|XP_003656958.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
gi|347004223|gb|AEO70622.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
Length = 264
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 125/252 (49%), Gaps = 53/252 (21%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV------------- 57
LR DGRR +ELR++ ++ + +DGS+Y+E G+TKV+ V GP
Sbjct: 13 LRVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGIGGGGAG 72
Query: 58 ---------RNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA 108
++K +V S++I A FS+ +RK R RGD
Sbjct: 73 GGGSGAGGGQSKEAEVVVSIVI------AGFSSVDRKRRGRGDN---------------- 110
Query: 109 IMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----- 163
+ + + P SQI + + VL DG A +NAATLA +DAGIPM +YV AC+A
Sbjct: 111 LHTHLFPHSQITVSLHVLSQDGSLLAALINAATLACVDAGIPMTDYVAACTAGSTSTYAA 170
Query: 164 ---GDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCA 220
G PL+D++H EE P LTVA L S +VAV+ ++ + L +L + GC
Sbjct: 171 NDEGADPLLDLNHQEEQ-ELPGLTVATLGASDRVAVLVCESRVQVSRLEGMLAVGVDGCK 229
Query: 221 DIHAILDTAIKQ 232
+ ILD +++
Sbjct: 230 QVREILDRVVRE 241
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 136/226 (60%), Gaps = 7/226 (3%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D R +LR I + G+ +Q++GSAYIE GNTKV AVYGPR ++ S +G++ +
Sbjct: 34 RLDNRGLEDLRAIFLKPGLVTQANGSAYIEVGNTKVACAVYGPRQLKKSSFSQNGTLNCD 93
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
F++S FS +R++ R D + E S L QA+S A+ E+ P+S IDI++ VL++DG
Sbjct: 94 FKFS--PFSCVKRRSAVR-DPEEKEFSQILIQALSPAVRLELLPKSTIDIYINVLESDGT 150
Query: 132 NFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
+ C A + A+++AL DAGI M + V ACS+ A D L+D + EE+ +L ++ +P
Sbjct: 151 SSCLAAAIVASSIALADAGIEMLDQVTACSSVFAQDQILMDGTEREESQKDGSLVLSFMP 210
Query: 190 LSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+V ++++ Q + V C + GC+ I++++ A+ + L
Sbjct: 211 SLNEVTHILQIGQSDSVMTSKAVEQC-IDGCSKIYSVMSNALLKSL 255
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 29/249 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--V 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT ++ +V+GP R GS
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHA 73
Query: 69 LINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ ++A F+ +RK R G DR++S I+ LR A + + + ++P S I I V VL
Sbjct: 74 VVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLS 133
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG--DTPLVDISHLE---------- 175
ADG A +NA TLAL+DAGIPM + C++ ++G TP D H E
Sbjct: 134 ADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGMSGSASTPR-DPRHDELDPLLDLSLP 192
Query: 176 ETLGGPNLTVA---ALPL----------SGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
E P+LTVA A+P+ + KV V+ + K+H +L +L + GC+ I
Sbjct: 193 EEQELPSLTVATTTAVPVGENNMDEDEEAMKVCVLTMESKVHATYLETMLAVGIDGCSQI 252
Query: 223 HAILDTAIK 231
+L+ IK
Sbjct: 253 RELLEGVIK 261
>gi|357461605|ref|XP_003601084.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355490132|gb|AES71335.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 276
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 47/263 (17%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIE-QGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E+R+IR +G S+++G + +G++ +G + + +
Sbjct: 8 GLRLDGRRPMEMRQIRAEIGAVSKANGDRMRKPKGDS---GQNFGNQSAAKLACMMGYGG 64
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L + ++ K + G+R+++EISL +RQ + I++ + PRSQIDI+V+VLQA
Sbjct: 65 LAAYLSEKSLVEQLGWKYQLIGNRRSTEISLVIRQTMEERILTHLMPRSQIDIYVQVLQA 124
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV------------------- 169
DGG AC+NAATLAL DAGIP+R+ V +CSA T L+
Sbjct: 125 DGGTRSACINAATLALADAGIPVRDLVTSCSAGYLNSTALLGIYLASLKILIGYLTRALL 184
Query: 170 --------DISHLEETLGGPNLTVAALPLSGKVAVME----------------LSQKLHL 205
D++++E++ G P++TV P KV +++ + KL +
Sbjct: 185 KVSESIWTDLNYVEDSAGVPDVTVGIFPKLDKVTLLQRPWDPWGPISLSILHLMDSKLPI 244
Query: 206 DHLPRVLDCALKGCADIHAILDT 228
D L V+ A +GC I + +T
Sbjct: 245 DILENVMQLATEGCKAIILLENT 267
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 7/229 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLG---VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
G R DGR+ +E R I+ +G +F+ +DG A+ E GNTK+L+ + GP ++ K
Sbjct: 11 GYRLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGPTELK----KTDE 66
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
I ++ F+ +++ + D T+EIS +R I+ +++ S+I+IF+ ++
Sbjct: 67 KCSIKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYII 126
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A +N LALIDAGI ++ ++ ACS + +VD + LE G P LT+
Sbjct: 127 ERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMV 186
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
+ K+ ++E ++ +D ++ + C +I ++ +K++ I
Sbjct: 187 IELNTHKIILLEFDAEVPIDIFESMVQTCIDSCVNIGRVMQLTVKENAI 235
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 131/240 (54%), Gaps = 10/240 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-SIKVHGSVL 69
LR DGRR +ELR+I ++ + +DGS+Y E GNTKV+ V+GPR R S
Sbjct: 13 LRTDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAA 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I+ + +A FS +RK R + D++ E+ + A ++ + + +P S I I + VL D
Sbjct: 73 IDVEIGIAGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVAC----SASLAGD----TPLVDISHLEETLGGP 181
G AC+NAATLAL+DAG+PM++YV A +AS A + PL+D++ +EE P
Sbjct: 133 GALLAACLNAATLALVDAGVPMKDYVAAVTTGSTASYASNDEEADPLLDLNGVEEQE-LP 191
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
T+ KV V+ + ++ + L ++ L GC + ILD +++ K+ R
Sbjct: 192 FFTMGTSTGEDKVNVLVMETRVQVARLESMVSVGLDGCKQVRGILDGIVREQGKKLLSGR 251
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R+DGR+ ++R I + GV SQ+ GSAY+E GNTKV+ +VYGPR + R K G
Sbjct: 33 GKRHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQ- 91
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN ++ A +S R+ D + S L +A++ + P+S +D+FV VL+
Sbjct: 92 -INCEFRFAQYSCQIRRQH-LNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLEN 149
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET--LGGPN---- 182
DGG + + A LAL DAGI M + V+ CS G T L+D ++ EET +G N
Sbjct: 150 DGGALASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGAENIDRG 209
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL-DTAIKQHLIKVA 238
+T+A +P +VA + L + L + C +I+ ++ D IK K+
Sbjct: 210 FGRMTLAFMPALQQVAALVQDGDLDAATVVSDLRALMNACHEIYPLVQDVLIKDLEEKLE 269
Query: 239 G 239
G
Sbjct: 270 G 270
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 126/241 (52%), Gaps = 14/241 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R+DGR+ ++R I + GV SQ+ GSAY+E GNTKV+ +VYGPR + R K G
Sbjct: 33 GKRHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQ- 91
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN ++ A +S R+ D + S L +A++ + P+S +D+FV VL+
Sbjct: 92 -INCEFRFAQYSCQIRRQH-LNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLEN 149
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET--LGGPN---- 182
DGG + + A LAL DAGI M + V+ CS G T L+D ++ EET +G N
Sbjct: 150 DGGALASAITTAGLALADAGIDMYDVVIGCSLRQDGSTCLLDPTYREETAPVGAENIDRG 209
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL-DTAIKQHLIKVA 238
+T+A +P +VA + L + L + C +I+ ++ D IK K+
Sbjct: 210 FGRMTLAFMPALQQVAALVQDGDLDAATVVSDLRVLMNACHEIYPLVQDVLIKDLEEKLE 269
Query: 239 G 239
G
Sbjct: 270 G 270
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 130/234 (55%), Gaps = 14/234 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R+DGR+ +++R I R G+ S + GSAYIE +TKV AVYGPR V R + K+ G++
Sbjct: 35 GTRHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTL 94
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+F++ A FS +R+ + + ++SL + QA+ A+ E +PR+QIDIF+ VLQ
Sbjct: 95 TCDFKF--ATFSCQKRQQHMQSSNE-KDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQN 151
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE---TLGGPN--- 182
G A + A+ AL AGI M + VV CS G+T LVD ++ EE GG N
Sbjct: 152 GGSALSAAITCASAALAAAGIEMYDVVVGCSTRQIGNTCLVDPAYDEEYNSKTGGKNNGS 211
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
L + +P +V+ +L + L + + + GC I+ + ++Q L K
Sbjct: 212 LCLGLMPSLNQVSAFIECGELETEILMQSIHSCVDGCMRIYPV----VRQCLTK 261
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 8/234 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G S DGS I G +KV A V+GPR +K H
Sbjct: 11 AGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R + + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQK 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG ACVNAA LALIDA + MR+ V A + + L+D+++ E P V A
Sbjct: 131 DGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCP---VIAA 187
Query: 189 PLSG----KVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQHLIKV 237
+G + +E + +L D R+L CA +G + + A+++H K+
Sbjct: 188 AFTGHDTRNIIWLETASRLPPDSAARLLKCAEEGATKLFETAMRKALEEHAKKI 241
>gi|353234637|emb|CCA66660.1| probable exosome complex exonuclease rrp41 [Piriformospora indica
DSM 11827]
Length = 277
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 19/243 (7%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQS-----------------DGSAYIEQGNTKVLAA 50
GG R+DGR +ELR + LG S+ DGSA + G T V A
Sbjct: 10 AGGYRSDGRTQYELRSLEIILGDSSRPRTINLHDSASNPHPNAPDGSAIVGHGLTVVSAR 69
Query: 51 VYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTS-EISLQLRQAVSAAI 109
V+GPR + +H ++ Q +M FS G R K E+ + + +
Sbjct: 70 VFGPREPLLRREAIHDRAKLSVQVAMLPFSGGMAGRRRGRGDKRLLELGAAIESTFESVV 129
Query: 110 MSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+ ++PRSQIDI VE+ Q DGG A +N+ TLAL DAG+ M + VVA SA L L+
Sbjct: 130 QTGLYPRSQIDIVVEIHQQDGGTLQAAINSVTLALTDAGVAMYDQVVAVSAGLHSTAVLL 189
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
D++H EE P+LTVA +P SGKV ++ + +LH+ V A + I +++
Sbjct: 190 DLTHHEEN-DMPHLTVAVMPRSGKVTLLNMEARLHVTRFEAVFKIACEAVTVIRDEMNSV 248
Query: 230 IKQ 232
I +
Sbjct: 249 ISK 251
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
T + G GR ++R I + G+ +Q++GSAYIE TK+ AVYGPR ++K+
Sbjct: 30 TRWKAGTPRKGRAARDIRPIYLKAGLINQANGSAYIETERTKIACAVYGPR--QSKTTVY 87
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +N + A FS +R+ P D + +++Q++QA+++A+ E+ P+S +DIFV
Sbjct: 88 NEKGRLNVEVKFAPFSCTKRRV-PIRDAEDRSVAVQIQQALASAVRLELLPKSTLDIFVT 146
Query: 125 VLQADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
V++ DG C A AA++AL DAGI M V +CSA++ G +D + E L +
Sbjct: 147 VIENDGIEGCIAAGSVAASVALADAGIEMLGLVASCSAAVVGKEIWMDPTEEESKLASGS 206
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
+ +A LP G + + S + D + ++ + CADIH ++
Sbjct: 207 VVLAGLPALGTITSVWQSGSMAPDEAIKCMEACQESCADIHTVM 250
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR E+RK + + SDGSA + GNT V A V+GP R ++ G+ L
Sbjct: 8 GYRLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRRRN--REGAEL 65
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ YS A F+T +R+ + DR E + L+Q I++++ P + ID+ V+++Q D
Sbjct: 66 M-VSYSQATFATRKRREQMH-DRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDD 123
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP-NLTVAAL 188
G A +NA TLALIDAGIPM + V A +VD++ EE +G N+ A +
Sbjct: 124 GSVTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENVGTVFNVHTAIM 183
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
SG VA+++ K+ L L +L +G I + I+++ I+V
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIREYGIEV 232
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR E+RK + S +DGSA + GNT V A V+GP R ++ G+ L
Sbjct: 8 GYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRN--REGAEL 65
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ YS A F+T +R+ + DR E + L+Q I++++ P + ID+ V+V+Q D
Sbjct: 66 M-VSYSQATFATRKRREQMH-DRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDD 123
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP-NLTVAAL 188
G A +NA TLALIDAGIPM + V A +VD++ EE +G N+ A +
Sbjct: 124 GSVTAAVINACTLALIDAGIPMIDIVAAAEGGYIDGKMVVDMNKDEENVGTVFNVHTAIM 183
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
SG VA+++ K+ L L +L +G I + I+++
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIREY 228
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 2/227 (0%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR--NKSIKVHGSVL 69
R DGR +++R++ +GV + + GSAY+E +TKV+ AVYGP + + G +
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+F Y+ G R+TR E+S LRQ + ++I +S + + V VLQAD
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAD 162
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A++AL DAGI + + V ACS G ++D + EE G +T+A +P
Sbjct: 163 GGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMP 222
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
S +V + + L+ GC +H +++ +K K
Sbjct: 223 GSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 269
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 24/243 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK------- 63
LR DGRR ++LR++ ++ +DGS+Y+E G+TKV+ V GP + K
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTGGGG 72
Query: 64 ------VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
S+++N +A FS+ +RK R R DR+ E+ + +++A++A + + P S
Sbjct: 73 QAGGQKDGASIVVNV--VVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHVHLFPHS 130
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLV 169
I + + VL DG A +NA TLALIDAGIPM +Y+ AC+A AGD PL+
Sbjct: 131 TITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITACTAGSTSSYAAGDDSADPLL 190
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
D++ EE P LTVA L S KVAV+ ++ + L +L + GC + +LD
Sbjct: 191 DLNTQEEQ-ELPYLTVATLGDSDKVAVLVCESRVQVSRLEGMLVVGVDGCRQVRKLLDGI 249
Query: 230 IKQ 232
++Q
Sbjct: 250 VRQ 252
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 118/234 (50%), Gaps = 8/234 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ S DGS I G +KV A V+GPR +K H
Sbjct: 11 AGLRLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
L+ + ++A F+ R+ R + + +I + Q + I+ +P SQI I++EVLQ
Sbjct: 71 LVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQK 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG ACVNAA LALIDA + MR+ V A + + L+D+++ E P V A
Sbjct: 131 DGNEKIACVNAACLALIDANVAMRDAVCCIDAGILDEHMLIDLTNDELRSQCP---VIAA 187
Query: 189 PLSG----KVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQHLIKV 237
+G + +E + +L D R+L CA +G + + A+++H K+
Sbjct: 188 AFTGHDTRNIIWLETASRLPPDSAARLLKCAEEGATKLFETAMRKALEEHAKKI 241
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR E+RK + S +DGSA + GNT V A V+GP R ++ G+ L
Sbjct: 8 GYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRN--REGAEL 65
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ YS A F+T +R+ + DR E + L+Q I++++ P + ID+ V+V+Q D
Sbjct: 66 M-VSYSQATFATRKRREQMH-DRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDD 123
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP-NLTVAAL 188
G A +NA TLALIDAGIPM + V A +VD++ EE +G N+ A +
Sbjct: 124 GSVTAAVINACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENVGTVFNVHTAIM 183
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
SG VA+++ K+ L L +L +G I + I+++
Sbjct: 184 QKSGAVALLQTEGKMPLQRLGDLLSIVEEGAKTIGIEMKKRIREY 228
>gi|156102006|ref|XP_001616696.1| exosome complex exonuclease rrp41 [Plasmodium vivax Sal-1]
gi|148805570|gb|EDL46969.1| exosome complex exonuclease rrp41, putative [Plasmodium vivax]
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%)
Query: 4 LTEYGG--GLRNDGRRGHELRKIRCRLG---VFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
L EY G R DGR+ E R I+ +G +F+ +DG A+ E GNTK+L+ + GP ++
Sbjct: 3 LVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELK 62
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
K I + ++ F+ E+K + D T+EIS +R I+ +++ S+
Sbjct: 63 KSEEKCS----IKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKNSE 118
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I+IF+ +++ DGG A +N LALIDAGI ++ ++ ACS + LVD + LE
Sbjct: 119 INIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLFLQNRILVDGNQLEINS 178
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
G P LT+ + K+ ++E ++ +D ++ + C ++ ++ +K++ IK+
Sbjct: 179 GAPELTMVIELNTHKIVLLEFDAEVPIDIFEAMVRTCMDCCINLGNVMKLTVKENAIKL 237
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPR-----GDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
N ++A F+ +RK + GDR+ T+E++ LR A I + ++PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------------ 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASSPAVTAESAQIGGINES 193
Query: 167 --PLVDISHLEE----------TLGGPNLTV------------AALPLSGKVAVMELSQK 202
PL+DIS EE T P++TV A + ++++ +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDSG 253
Query: 203 LHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H+ +L + + GC IL+ +K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|221060204|ref|XP_002260747.1| exosome complex exonuclease rrp41 homolog [Plasmodium knowlesi
strain H]
gi|193810821|emb|CAQ42719.1| exosome complex exonuclease rrp41 homolog,putative [Plasmodium
knowlesi strain H]
Length = 246
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 128/239 (53%), Gaps = 9/239 (3%)
Query: 4 LTEYGG--GLRNDGRRGHELRKIRCRLG---VFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
L EY G R DGR+ E R I+ +G +F+ +DG A+ E GNTK+L+ + GP ++
Sbjct: 3 LVEYVNEEGYRLDGRKEDECRLIKINVGNENIFTDADGFAFYEIGNTKLLSYIQGPTELK 62
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
K I + ++ F+ E+K + D T+EIS +R I+ +++ S+
Sbjct: 63 KSEEKCS----IKCEVFLSPFNVYEKKKKKTKDSVTNEISAYIRNICENIILLDLYKNSE 118
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I+IF+ +++ DGG A +N LALIDAGI ++ ++ ACS + LVD + LE
Sbjct: 119 INIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQLEINS 178
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
G P LT+ + K+ ++E ++ +D ++ + C ++ ++ +K++ IK+
Sbjct: 179 GAPELTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMKLTVKENAIKL 237
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPR-----GDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
N ++A F+ +RK + GDR+ T+E++ LR A I + ++PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------------ 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGEINES 193
Query: 167 --PLVDISHLEE----------TLGGPNLTV------------AALPLSGKVAVMELSQK 202
PL+DIS EE T P++TV A + ++++ +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEEDDYDAENENQMLSIVHMDSG 253
Query: 203 LHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H+ +L + + GC IL+ +K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 128/269 (47%), Gaps = 48/269 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPR-----GDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
N ++A F+ +RK + GDR+ T+E++ LR A I + ++PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------------ 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINES 193
Query: 167 --PLVDISHLEE----------TLGGPNLTV------------AALPLSGKVAVMELSQK 202
PL+DIS EE T P++TV A + ++++ +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDDYDAENENQMLSIVHMDSG 253
Query: 203 LHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H+ +L + + GC IL+ +K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 17/235 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR ++ ++ S GS+Y+ GNT +L +V+GP R
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +RK R G D+++S ++ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHL--------EET 177
L +DG A VNA TLAL+DAGIPM + C+AS D P D E+
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTASTPRD-PNNDTLDPLLDLSLPEEQE 192
Query: 178 LGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
L P LTV + KVA++ + K+H ++ +L + GC I IL+ IK+
Sbjct: 193 L--PFLTVGTT-TAMKVAMLTMDSKVHCTYVETMLAVGIDGCKQIREILEGVIKK 244
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 7/220 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLG---VFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
G R DGR+ E R I+ +G +F+ +DG A+ E GNTK+L+ + GP ++ K
Sbjct: 11 GYRLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGPTELKKSDDKCS- 69
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
I ++ F+ +++ + D T+EIS +R I+ +++ S+I+IF+ ++
Sbjct: 70 ---IKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYII 126
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A +N LALIDAGI ++ ++ ACS + +VD + LE G P LT+
Sbjct: 127 ERDGGIKHAAINTCILALIDAGIAIKYFISACSVLYLQNQIIVDGNQLEINSGSPELTMV 186
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
+ K+ ++E ++ +D ++ + C +I ++
Sbjct: 187 IELNTHKIILLEFDAEVPIDIFESMVQTCIDSCVNIGGVM 226
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 8/211 (3%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKT 86
++GV SQ GS+Y+E NTKVL ++GPR + ++ + +N + FS+ K
Sbjct: 2 KIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKT--ELFETAKLNCELKYTTFSSTTEKI 59
Query: 87 RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALID 146
+ K ++SL + Q++ +I E +P++ IDI++ VL DG A + AAT+AL D
Sbjct: 60 DYVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALAD 119
Query: 147 AGIPMREYVVACSASLAGDT-PLVDISHLEETL-GGPNLTVAALPLSGKVAVMELSQKLH 204
AG+ M + V +CS S D L+D + LEET+ + VA +P ++ + + +L
Sbjct: 120 AGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQIIQTGELQ 179
Query: 205 LDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
++ +D + GC I++I+ KQ+LI
Sbjct: 180 YTNVLECVDLCIDGCDKIYSIM----KQNLI 206
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 43 GNTKVLAAVYGPRPVRNKSIKV--HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQ 100
GNTKVLA VYGPR +KS + ++ +MA + ER+ R +E +
Sbjct: 2 GNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYAQA 61
Query: 101 LRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA 160
+R+ I++ ++P S I I + QADGG C+NAA LA+IDAGI + ++ V+ +
Sbjct: 62 IRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSLNV 121
Query: 161 SLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCA 220
+T L D++++E L G LTVA LP S + + L+ + L+ VLD A +GC
Sbjct: 122 GYMDNTILFDMNYVESHLNGILLTVAYLPKSDQFTLTTLNSNIPLELFEDVLDAAKEGCK 181
Query: 221 DIHAILDTAIKQHLIKVA 238
++AIL K H+++ A
Sbjct: 182 QVYAIL----KDHVLENA 195
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 132/242 (54%), Gaps = 23/242 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR------------PVR 58
LR DGRR ++LR++ ++ +DGS+Y+E G+TKV+ V GP +
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQKKGTVGSAQ 72
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
K S+++N +A FS+ +RK R R DR+ E+ + +++A++A + + + P S
Sbjct: 73 ATGQKEGASIVVNV--VVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHLFPHST 130
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS-----LAGD---TPLVD 170
I + + VL DG A +NA TLA+IDAGIPM +Y+ AC+A AGD PL+D
Sbjct: 131 ITVSLHVLSQDGSLLAALINATTLAVIDAGIPMTDYITACTAGSTSSYAAGDDAADPLLD 190
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ EE P LTV L S KVAV+ ++ + L +L + GC + +LD +
Sbjct: 191 LNTQEEQ-ELPYLTVGLLGDSDKVAVLVCESRVQVSRLEGMLVVGVDGCKQVRRLLDGIV 249
Query: 231 KQ 232
K
Sbjct: 250 KH 251
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 127/253 (50%), Gaps = 33/253 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR ++ ++ S GS+++ GNT ++ +V+GP R
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +R+ R G DR++S I+ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-----PLVDISHL------ 174
L ADG A VNA TLAL+DAGIPM + AC++ ++G P D
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 175 --EETLGGPNLTV---AALPL----------SGKVAVMELSQKLHLDHLPRVLDCALKGC 219
E+ L P LTV A+P+ KV++M + K+H +L +L + GC
Sbjct: 194 PEEQEL--PFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGC 251
Query: 220 ADIHAILDTAIKQ 232
I IL+ IK+
Sbjct: 252 KQIREILEGVIKR 264
>gi|124808870|ref|XP_001348430.1| exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
gi|23497324|gb|AAN36869.1|AE014820_19 exosome complex exonuclease rrp41, putative [Plasmodium falciparum
3D7]
Length = 246
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 7/231 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ---SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
G R DGR+ E R I+ LG ++ DG ++ E GNTK+ A + GP R K
Sbjct: 11 GYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKC-- 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
L+ ++ F+ E+K + D T EIS +R + I+ +++ S+I+IF+ ++
Sbjct: 69 --LVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYII 126
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ DGG A VN LALIDAGI ++ ++ A S + +VD + E G P LT+A
Sbjct: 127 ERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSGSPELTLA 186
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
S + ++E ++ +D +L + C + I+ +IK++ IK+
Sbjct: 187 IDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENAIKL 237
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 14/232 (6%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R DGRR ELR + R GV SQ+ GSAYIE NTKV+ A+YGPR R + + G +
Sbjct: 34 GCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRL 93
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
F++ A FS R+ + D + E S + QA+ A+ E P++Q+DI++ VL+
Sbjct: 94 TCEFKF--APFSCIYRRKHIQ-DAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLEN 150
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE--ETLGGPNLTVA 186
DG A + A++AL AGI M + V AC+ + + L+D E + + VA
Sbjct: 151 DGSALSAGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSASGHTMVA 210
Query: 187 ALP----LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
LP +SG V EL+Q D + L ++GCA I I+ A+ +++
Sbjct: 211 ILPSLNVVSGLVQEGELTQ----DAATKALSSCIEGCARILPIMQQALVKNI 258
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 33/252 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR ++ ++ S GS+++ GNT ++ +V+GP R
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +R+ R G DR++S I+ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-----PLVDISHL------ 174
L ADG A VNA TLAL+DAGIPM + AC++ ++G P D
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTLRDPRNDFLDPLLDLSL 193
Query: 175 --EETLGGPNLTV---AALPL----------SGKVAVMELSQKLHLDHLPRVLDCALKGC 219
E+ L P LTV A+P+ KV++M + K+H +L +L + GC
Sbjct: 194 PEEQEL--PFLTVGTTTAIPVGEDAMDDDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGC 251
Query: 220 ADIHAILDTAIK 231
I IL+ IK
Sbjct: 252 KQIREILEGVIK 263
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 33/252 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR ++ ++ S GS+++ GNT ++ +V+GP R
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +R+ R G DR++S I+ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-----PLVDISHL------ 174
L ADG A VNA TLAL+DAGIPM + AC++ ++G P D
Sbjct: 134 LSADGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 175 --EETLGGPNLTV---AALPL----------SGKVAVMELSQKLHLDHLPRVLDCALKGC 219
E+ L P LTV A+P+ KV++M + K+H +L +L + GC
Sbjct: 194 PEEQEL--PFLTVGTTTAIPVGEDAMDEDDEDMKVSMMVMDSKVHCTYLETMLAVGIDGC 251
Query: 220 ADIHAILDTAIK 231
I IL+ IK
Sbjct: 252 KQIREILEGVIK 263
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 48/269 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPR-----GDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
N ++A F+ +RK + GDR+ T+E++ LR A I + ++PRS I + V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------------ 166
VL +DG AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGIKES 193
Query: 167 --PLVDISHLEE----------TLGGPNLTV------------AALPLSGKVAVMELSQK 202
PL+DIS EE T P++TV A + ++++ +
Sbjct: 194 LDPLLDISAPEEVELPYMTVANTNPMPDITVPKDEEDEEDDEYDAENENQMLSIVHMDSG 253
Query: 203 LHLDHLPRVLDCALKGCADIHAILDTAIK 231
+H+ +L + + GC IL+ +K
Sbjct: 254 VHVSYLETMFAVGIDGCKQTREILNGVLK 282
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 34/250 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEGKRSETAGAAGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPR-----GDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
N ++A F+ +RK + GDR+ T+E++ LR A I + ++PRS I I V
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
VL +DG F AC+NA TLAL+DAGIPM + + SL PL+DIS EE + P +T
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGW-GGINESL---DPLLDISAPEE-VELPYMT 188
Query: 185 VA---ALP--------------------LSGKVAVMELSQKLHLDHLPRVLDCALKGCAD 221
VA +P + ++++ + +H+ +L + + GC
Sbjct: 189 VANTNPMPDINVPRDDEDEEDDEYDAENENQMLSIVHMDSGVHVSYLETMFAVGIDGCKQ 248
Query: 222 IHAILDTAIK 231
IL+ +K
Sbjct: 249 TREILNGVLK 258
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|347441428|emb|CCD34349.1| similar to exosome complex exonuclease RRP41 [Botryotinia
fuckeliana]
Length = 261
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 24/247 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS-- 67
LR DGRR +ELR++ ++ SDGS+Y+ GNT+VL V GP P + +SI GS
Sbjct: 13 LRLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNN 72
Query: 68 ----VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ + S A F+ +RK R D++ E+S L + +++ + S I I +
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISL 132
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD--------TPLVDISHLE 175
+L DG A +NA+TLALIDAGIPM Y+ AC+A PL+D+ +L
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDL-NLG 191
Query: 176 ETLGGPNLTVAALPLSGK-----VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
E P LTVA +G+ V + + ++ L +L + GC + ILD I
Sbjct: 192 EEQELPFLTVAT---AGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVREILDGVI 248
Query: 231 KQHLIKV 237
+ K+
Sbjct: 249 RTRGKKI 255
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 127/250 (50%), Gaps = 30/250 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT ++ V+GP +V +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAV-V 72
Query: 71 NFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++A F+ +RK R G DR+++++S L+ A + + + ++P S I + V VL +D
Sbjct: 73 DVDVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSD 132
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAG--DTPLVDISHLEETLGG------- 180
G F A +NA TLAL+DAGIPM + C+A ++G TP + EE+L
Sbjct: 133 GSLFAAAINACTLALVDAGIPMPGLLCGCTAGVSGSASTPRDPSASSEESLDPLLDLSLP 192
Query: 181 -----PNLTVAA---LPLSG-----------KVAVMELSQKLHLDHLPRVLDCALKGCAD 221
P +T+ LP + KV+V+ + + H +L +L + GC
Sbjct: 193 EEQELPFITIGTTTPLPAASAAAAEDDVDDMKVSVLHMETRAHTSYLDAMLAVGIDGCKQ 252
Query: 222 IHAILDTAIK 231
I IL+ IK
Sbjct: 253 IREILEGVIK 262
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 16/240 (6%)
Query: 12 RNDGR-RGH-ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DGR RG ++R + R G+ SQ+ GSAYIE GNTK++ VYGPR K S
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ A FS ER + +G + ++SL L +++ + + +PRSQI++ V VL+ D
Sbjct: 96 LITDMRFAPFSCRERGSWIQGSDE-KDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLEND 154
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE-----------ETL 178
G V A++AL DAGI M + V+ CS G T L+D + LE E L
Sbjct: 155 GAVLAHAVTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLASGSRENL 214
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
G +LTVA LP +++ ++ ++ D L + ++GC ++ ++ A+ + + + A
Sbjct: 215 G--SLTVAFLPSLNQISGLQSDGEMGEDTLTGGVRTCIEGCFKLYPVIQQALSKAVRRKA 272
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 125/252 (49%), Gaps = 33/252 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR + ++ S GS+++ GNT ++ +V+GP R
Sbjct: 14 LRLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +RK R G DR++S I+ LR A + + + ++P S I I V V
Sbjct: 74 GAIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-----PLVDISHL------ 174
L +DG A VNA TLAL+DAGIPM + AC++ ++G P D
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLSACTSGMSGSASTPRDPRNDFLDPLLDLSL 193
Query: 175 --EETLGGPNLTV---AALPL----------SGKVAVMELSQKLHLDHLPRVLDCALKGC 219
E+ L P LTV A+P+ KV+++ + K+H +L +L + GC
Sbjct: 194 PEEQEL--PFLTVGTTTAIPVGEDAMDDDEDDMKVSMLVMDSKVHCTYLETMLAVGIDGC 251
Query: 220 ADIHAILDTAIK 231
I IL+ IK
Sbjct: 252 KQIREILEGVIK 263
>gi|119188875|ref|XP_001245044.1| hypothetical protein CIMG_04485 [Coccidioides immitis RS]
gi|392867950|gb|EAS33670.2| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 298
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 45/265 (16%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSVL 69
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R+++ G +
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 70 INFQYSMAVFSTGERKTRP-----------RGDRK-TSEISLQLRQAVSAAIMSEVHPRS 117
++ ++A F+ +RK + GDR+ T+E+S LR A + + ++P S
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------- 166
I + V VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 TISVHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 167 ---------PLVDISHLEETLGGPNLTVAAL-PLSGK----------VAVMELSQKLHLD 206
PL+D+S EE L P++TVA P++G ++++ + +H+
Sbjct: 194 VGGINESLDPLLDLSRPEE-LELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHIS 252
Query: 207 HLPRVLDCALKGCADIHAILDTAIK 231
+L V + GC + IL+ +K
Sbjct: 253 YLETVFAVGIDGCKQVREILNGVLK 277
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 4/169 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R+DGR+ ++R I + GV SQ+ GSAYIE GNTKV+ +VYGPR + R K G
Sbjct: 32 GKRHDGRQFGDVRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARRKDFTFKGQ- 90
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
IN ++ A +S R+ D + S L +A++ + P+S +D+FV V++
Sbjct: 91 -INCEFRFAQYSCPIRRQH-LNDGEALHYSQLLEKALAPVVCLHKFPKSTVDVFVLVIEN 148
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET 177
DGG + A LAL DAGI M + VV CS G T L+D S+ EE
Sbjct: 149 DGGALACAITTAGLALADAGIDMYDVVVGCSLRQDGSTCLIDPSYNEEV 197
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 14/243 (5%)
Query: 10 GLRNDGRRGHEL--RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R DGRR ++ R + R G+ SQ+ GSAY+E GNTK++ VYGPR K
Sbjct: 32 GPRADGRRRDQVDVRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETDRKDETDMKC 91
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ A FS ER + +G + + SL L +++ AI +PRSQI++ V VL+
Sbjct: 92 GRLTTDMRFAPFSCPERGSWIQGSQD-KDFSLMLHESLQPAICLHKYPRSQIEVSVMVLE 150
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE---------ETL 178
G V A+LAL DAGI M + V+ CS G + +VD S++E E
Sbjct: 151 NSGSVLAHAVTCASLALADAGIEMYDLVLGCSMRQDGTSYVVDPSYMEENGCSSVSCENQ 210
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
GG LTVA LP +++ ++ + + L + ++GC ++ ++ A+ + + K A
Sbjct: 211 GG--LTVAFLPSLNQISGLQSDGDMTEETLTAGVRTCIEGCYKLYPVIQRALTKAVRKAA 268
Query: 239 GAR 241
++
Sbjct: 269 PSQ 271
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR +ELR ++ G+ + ++GSAY+E GN KVLAAVYGP+ + + +
Sbjct: 14 GKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAI 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +YSMA FS+ R +R+ EIS ++ +M E P S+I+IF+E+LQ+D
Sbjct: 74 IKCRYSMAPFSSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQSD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA +AL +AGI +++ V A SA + ++D++ +E+ ++ V+ P
Sbjct: 134 GGTRAAGITAAAVALANAGIHVKDMVYAVSAGRIDEHVVIDVNMIEDNYSDADMPVSISP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
V ++++ + + L+ I + A+K+
Sbjct: 194 KDNSVLLLQMDGGFTKEQFGEAMKMILESGKVISKVQRDALKR 236
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 141/296 (47%), Gaps = 57/296 (19%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP + +I
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVI 73
Query: 71 NFQYSMAVFSTGERKTRPRG-----DRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ ++A F+ +RK + DR+ T+E++ +R A I + ++PRS I I V
Sbjct: 74 SVVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVS 133
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------------ 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQMGGVNET 193
Query: 167 --PLVDISHLEETLGGPNLTVAAL-PL------------------SGKVAVMELSQKLHL 205
PL+DIS EE + P +TVA P+ + ++++ + +H+
Sbjct: 194 LDPLLDISAPEE-VELPYMTVANTNPMPDINIPKDDEDEYDAENENQMLSIVHMDSGVHV 252
Query: 206 DHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQLGQ-LTGKKKEEE 260
+L + + GC IL+ +K G G++ +G+ ++G ++E
Sbjct: 253 SYLETMFAVGIDGCKQTREILNGVLK----------GAGKRVLMGEAVSGPGYDDE 298
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 129/234 (55%), Gaps = 13/234 (5%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++R I + G+ +++ GSAYIE G TKVL AVYGP+P S + +N
Sbjct: 35 RRDGRLAAQVRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPT-PPSAPFNPKARLN 93
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG- 130
+ A F++G R+ P D + + ++ L+Q++ +++ E P+SQID+FV VL++DG
Sbjct: 94 VEIKFAPFASGVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLESDGW 153
Query: 131 -GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----LVDISHLEETLGGPNLT 184
+ V AA++AL +AGIPMR V ACSA+L TP ++D + E ++
Sbjct: 154 DNDLSIGVTAASVALAEAGIPMRGLVTACSATLL-PTPNSKSAILDPTRDEARESSAFVS 212
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+A +P G V + LS + D L L A + C +H + KQ L+ A
Sbjct: 213 LACMPALGTVTSLRLSGAMEPDLLADTLAKAHEVCTLLHGV----AKQALVDSA 262
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 31/251 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-----NKSIKVH 65
LR DGRR +ELR + ++ S GS+Y+ GNT ++ +V+GP R S
Sbjct: 14 LRLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSS 73
Query: 66 GSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G+V + ++A F+ +RK R G DR++S ++ LR A + + + ++P S I I V
Sbjct: 74 GAV-VEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVS 132
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG---- 180
VL +DG A VNA TLAL+DAGIPM + C+A ++G H ++
Sbjct: 133 VLSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPHNDQLDPLLDLS 192
Query: 181 -------PNLTV---AALPLSG----------KVAVMELSQKLHLDHLPRVLDCALKGCA 220
P LTV +++P+ KV ++ + K+H ++ +L + GC
Sbjct: 193 LPEEQELPFLTVGTTSSIPVGENAMDTDEEDMKVTMLNMDSKVHCSYIETMLAVGIDGCK 252
Query: 221 DIHAILDTAIK 231
I I++ IK
Sbjct: 253 QIREIMEGVIK 263
>gi|389748864|gb|EIM90041.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 264
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQY 74
GR+ ++R I + G+ SQ++GSAYIE TK+ AVYGPR +N S +G +N +
Sbjct: 43 GRQPLDIRPIFLKAGLISQANGSAYIEAERTKIACAVYGPRQSKNTSYSENGR--LNVEV 100
Query: 75 SMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFC 134
+ FS R+ P D + +++ ++QA++ ++ E+ P+S IDIFV V++ DG C
Sbjct: 101 KFSPFSCATRRA-PLRDAEDRSVAVLIQQALTPSVRLELLPKSVIDIFVTVIENDGTEGC 159
Query: 135 A--CVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
AA+ AL DAGI M V +CS+SL G +D + E TL NL A +P G
Sbjct: 160 VAAASLAASTALADAGIEMLGLVTSCSSSLVGKDVWLDPTEQETTLAEGNLVFACIPALG 219
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
V + + ++ + ++ + C DIH I
Sbjct: 220 LVTSVWETGRMLPSQAAQCMERCQERCTDIHQI 252
>gi|393216797|gb|EJD02287.1| ribosomal protein S5 domain 2-like protein [Fomitiporia
mediterranea MF3/22]
Length = 262
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 119/218 (54%), Gaps = 5/218 (2%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQY 74
GR ++R I + G+ SQ++GSAYIE TK+ AVYGPR ++K+ H ++ +
Sbjct: 42 GRSASDIRPIFLKTGLISQANGSAYIETEKTKIACAVYGPR--QSKTSTYHEKGKLHVEV 99
Query: 75 SMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFC 134
A FS +R+ P D + +S+ ++Q+++ AI E+ P+S IDIF+ V++ DG C
Sbjct: 100 KFAPFSCAKRRA-PMRDAEDRSVSILIQQSLTPAIRLELIPKSSIDIFLFVIENDGIEGC 158
Query: 135 ACVN--AATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
AA+ AL A I M VV+C+A+ +D + E LT+A +P G
Sbjct: 159 VSAGAIAASTALAHARIDMLGLVVSCAAATMPKEIWLDPTTEEARAARGRLTLACVPALG 218
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
V + + ++ +D + + +D + C DIHA++ A+
Sbjct: 219 LVTNVWQTGQMSIDEVEKCIDACQEKCRDIHAVVAQAL 256
>gi|303323507|ref|XP_003071745.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240111447|gb|EER29600.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320035116|gb|EFW17058.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 298
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 135/265 (50%), Gaps = 45/265 (16%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSVL 69
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R+++ G +
Sbjct: 14 LRLDGRRWNELRLVQAQISTNPASSGSSYLAMGNTVVVCNVHGPAEGKRSETAGGGGGAV 73
Query: 70 INFQYSMAVFSTGERKTRP-----------RGDRK-TSEISLQLRQAVSAAIMSEVHPRS 117
++ ++A F+ +RK + GDR+ T+E+S LR A + + ++P S
Sbjct: 74 VSVVVNIAGFAGVDRKKKSMMAGGGGGGGGGGDRQATTELSSALRDAFQPHLHTHIYPHS 133
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------- 166
I + V VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 TISLHVSVLSSDGSIFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSR 193
Query: 167 ---------PLVDISHLEETLGGPNLTVAAL-PLSGK----------VAVMELSQKLHLD 206
PL+D+S EE L P++TVA P++G ++++ + +H+
Sbjct: 194 VGGINESLDPLLDLSRPEE-LELPHMTVANTNPVAGASEEGEEEEQMLSIVRMESGVHIS 252
Query: 207 HLPRVLDCALKGCADIHAILDTAIK 231
+L + + GC + IL+ +K
Sbjct: 253 YLETMFAVGIDGCKQVREILNGVLK 277
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 12/238 (5%)
Query: 12 RNDGR-RGH-ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DGR RG ++R + R G+ SQ+ GSAYIE GNTK++ VYGPR + K S
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ A FS ER + +G + ++SL L +++ + +PRSQI++ V VL+ D
Sbjct: 96 LMTDMRFAPFSCRERGSWIQGSDE-KDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLEND 154
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE------TLGGPN- 182
G V A++AL DAGI M + V+ CS T L+D ++LEE + G N
Sbjct: 155 GSVLAHAVTCASMALADAGIEMYDLVLGCSIRQESATYLIDPTYLEENGCNLASGSGDNF 214
Query: 183 --LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
LTVA LP +++ ++ ++ D L + ++GC ++ ++ A+ + + + A
Sbjct: 215 GSLTVAFLPSLNQISGLQSDGEMGEDILTGGVRTCIEGCFKLYPVIQQALTKAVRRKA 272
>gi|340522690|gb|EGR52923.1| predicted protein [Trichoderma reesei QM6a]
Length = 287
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 36/254 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR------------ 58
LR DGRR ++LR++ ++ +DGS+Y+E G+TKV+ V GP +
Sbjct: 13 LRIDGRRWNDLRRLHAQIHTQEAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTTGGG 72
Query: 59 -------------NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAV 105
K S+++N +A FS+ +RK R R DR+ E+ + +++A+
Sbjct: 73 GGGGGAAAAGGALGAGQKDAASIVVNV--VVAGFSSVDRKRRGRNDRRIQEMEITIQKAL 130
Query: 106 SAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS---- 161
+A + + + P S I + + VL DG A +NA TLALIDAGIPM +Y+ AC+A
Sbjct: 131 AANLHTHLFPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITACTAGSTSS 190
Query: 162 -LAGD---TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALK 217
AGD PL+D++ EE P LTVA L S KVAV+ ++ + L +L +
Sbjct: 191 YAAGDDSADPLLDLNTQEEQ-ELPFLTVATLGDSDKVAVLVCESRVQVSRLEGMLVVGVD 249
Query: 218 GCADIHAILDTAIK 231
GC + +LD ++
Sbjct: 250 GCRQVRRLLDGIVR 263
>gi|238583089|ref|XP_002390134.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
gi|215453188|gb|EEB91064.1| hypothetical protein MPER_10647 [Moniliophthora perniciosa FA553]
Length = 172
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 105 VSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG 164
+ I + ++PRSQIDI+V+VLQ DGG AC+NA TLAL +AGIP+ ++V A + +
Sbjct: 21 IEPVIQTSLYPRSQIDIYVQVLQQDGGVLQACINATTLALANAGIPLLDFVCAVTGGVHS 80
Query: 165 DTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHA 224
+PL+D++ LEE PN+TVA +P SGKV ++ + +LH+D + A + IH
Sbjct: 81 TSPLLDLTQLEEN-DLPNVTVAVMPRSGKVTLVSMETRLHVDRFEEIFRLAGEAGTVIHG 139
Query: 225 ILDTAIKQHLIK-VAGARGLGRK 246
+ A+K+ + V R +G+
Sbjct: 140 EMKRAVKERAARLVESMRSIGKN 162
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 126/254 (49%), Gaps = 34/254 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP----RPVRNKSIKVHG 66
LR DGRR +ELR ++ ++ S GS+Y+ GNT +L +V+GP R
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSA 73
Query: 67 SVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +RK R G D+++S ++ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT-----PLVDISHL------ 174
L +DG A VNA TLAL+DAGIPM + C++ ++G P D
Sbjct: 134 LSSDGSLLAAAVNACTLALVDAGIPMPGLLCGCTSGMSGSASTPRDPNNDTLDPLLDLSL 193
Query: 175 --EETLGGPNLTV---AALPLSG-----------KVAVMELSQKLHLDHLPRVLDCALKG 218
E+ L P LTV A+P+ KVA++ + K+H ++ +L + G
Sbjct: 194 PEEQEL--PFLTVGTTTAVPVGEAAMINEDEDEMKVAMLTMDSKVHCTYVETMLAVGIDG 251
Query: 219 CADIHAILDTAIKQ 232
C I IL+ IK+
Sbjct: 252 CKQIREILEGVIKK 265
>gi|403158112|ref|XP_003307453.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163684|gb|EFP74447.2| hypothetical protein PGTG_00403 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 292
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQS----DGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
GGLR D RR +ELR I + D A +E G TK++ V GPR S++
Sbjct: 9 SGGLRLDNRRPYELRSID--FNILPNPPVGCDSVARVEHGLTKLIGFVSGPR----DSVE 62
Query: 64 VHGSVLINF-------------------------QYSMAVFSTGERKTRPRGDRKTSEIS 98
+ +V S FS+ +RK R D+K ++++
Sbjct: 63 SNRTVATTLGNPTSNSASSNLNNNNNNQNGSISVHISTTPFSSIDRKKIGRSDKKFADLA 122
Query: 99 LQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC 158
++ +M ++PRS IDI+V+VLQ DG A +N TLALI AG+ + +YV++
Sbjct: 123 QAIQNTFEPVVMLHLYPRSTIDIYVQVLQQDGALLQAAINVTTLALIGAGVSISDYVLSV 182
Query: 159 S--ASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCAL 216
S A PL+D+++ E+T PNLT+A LP + K+ +++L ++++ +L+ L
Sbjct: 183 SVGALSTPSCPLLDLTNSEQT-DLPNLTIAVLPRTQKLTLLQLDTRINILTFESLLEIGL 241
Query: 217 KGCADIHAILDTAIKQ 232
+ C + +D +++
Sbjct: 242 EACLVLQLEMDREVRR 257
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVF------------SQSDGSAYIEQGNTKVLAAVYGPRPVR 58
LR+DGRR HE+R + C LG S GSA + G T+VL V GP
Sbjct: 8 LRSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAG 67
Query: 59 NKSIKVHGSVLINFQYSMAVFST-GERK-TRPRGDRKTSEISLQLRQAVSAAIMSEVHPR 116
++ ++ + + FS G+R+ T P DR+ E S L+ A+SA+I+ ++P+
Sbjct: 68 RRTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLHLYPK 127
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA 160
S+I + V VL DGG A +NAATLALIDAGIP+++ V ACSA
Sbjct: 128 SKISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDMVCACSA 171
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 10/238 (4%)
Query: 10 GLRNDGRRGHEL--RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R DGRR ++ R + R G+ SQ+ GSAYIE GNTK++ VYGPR K
Sbjct: 32 GPRADGRRRDQVDVRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETERKDETDMKC 91
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ A FS ER + +G ++ + S L++++ A+ +PRSQI++ + VL+
Sbjct: 92 GRLTTDMRFAPFSCPERGSWIQGSQE-KDFSTMLQESLQPAVCLHKYPRSQIEVNMMVLE 150
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN----- 182
G + A+LAL DAGI M + V+ CS G + + D + EE GP+
Sbjct: 151 NSGSVLAHAITCASLALADAGIEMYDLVLGCSLRQNGASYVADPTSAEENDRGPDQSRNQ 210
Query: 183 --LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
LTVA LP +++ ++ ++ D L + ++GC ++ ++ + + + + A
Sbjct: 211 GSLTVAFLPSLNQISGLQSDGEMSEDTLTAGVRTCIEGCYKLYPLVQQVLSRCVSRAA 268
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 33/252 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR--NKSIKVHGS- 67
LR DGRR +ELR ++ ++ S GS+Y+ GNT ++ +V+GP R + + GS
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSS 73
Query: 68 -VLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +RK R G D+++S I+ LR A + + + ++P S I I V V
Sbjct: 74 GAVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG--DTP-----------LVDIS 172
L ADG A +NA TLAL+DAGIPM + C+A ++G TP L
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPRNDELDPLLDLSL 193
Query: 173 HLEETLGGPNLTV---AALPLSG----------KVAVMELSQKLHLDHLPRVLDCALKGC 219
E+ L P LTV ++P+ KV+++ + K+H ++ +L + GC
Sbjct: 194 PEEQEL--PFLTVGTTTSVPVGENAMDDDEEDMKVSMLNMDSKVHCTYVETMLAVGIDGC 251
Query: 220 ADIHAILDTAIK 231
I IL+ IK
Sbjct: 252 NQIREILEGVIK 263
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 5/229 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR E+RK LG +DGSA + GNT V A V GP + ++ H S
Sbjct: 8 GYRVDGRRPTEMRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRRN---HDSAE 64
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +S A F+T R+ DR +E S L+Q ++ + P + I+I V+VLQ D
Sbjct: 65 LKVFFSQATFAT-RRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIRVQVLQDD 123
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP-NLTVAAL 188
G A +NA TLALIDAGIPM + V + +VD+ EE G N+ A +
Sbjct: 124 GSVNAAAINACTLALIDAGIPMSDIVSSAEGGYISGRMVVDMGKDEENAGTVFNVHTAVM 183
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
SG VA+++ K+ L L +L +G + + I ++ KV
Sbjct: 184 HNSGTVAILQTEGKMPLKRLGELLSVVEEGAKEAGIQMKEKIMEYGNKV 232
>gi|443707474|gb|ELU03042.1| hypothetical protein CAPTEDRAFT_117513 [Capitella teleta]
Length = 124
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 80/113 (70%), Gaps = 6/113 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYG-PRPVRNKSIKVHGSV 68
G R GR+ +ELR+I+CR+GV+SQ+DGSAYIEQGNTKVLAAV+G P + SI S
Sbjct: 14 GFRVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHGLHEPATSSSILAFPS- 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
I+ QYSMAVFS G+ G +K E+ L L+Q + A+I++ + PRSQIDI
Sbjct: 73 YISHQYSMAVFSAGDVG----GRKKLIEMMLHLKQTIEASILTHLCPRSQIDI 121
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 17/239 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV--RNKSIKVHGS 67
G+R +G ++R + R G+ SQ+ GSAYIE GNTK++ +VYGP+ R+++ G
Sbjct: 35 GVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGR 90
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ +F+ +A FS +R +G + ++S L +++ + +PRSQID+ V VL+
Sbjct: 91 LVCDFR--LAPFSCVKRGAWIQGSEE-RDLSATLMESLRPGVCLHRYPRSQIDVNVMVLE 147
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-----GPN 182
DG V A++AL DAGI M + V+ C+ +G+ LVD S+ EE G N
Sbjct: 148 NDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDN 207
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+T+A LP +V+ + ++ D L + + GC ++ ++ A+ + + K A
Sbjct: 208 QGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKKA 266
>gi|170087298|ref|XP_001874872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650072|gb|EDR14313.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 255
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 5/222 (2%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G+ R ++R I + G+ +Q+ GSAYIE NTK+ AV+GPR +N + G
Sbjct: 29 WNVGMPRRNRASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGPRQAKNVAFNEKG 88
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ ++ ++ A FS +R+ P D + I++ + QA+S+++ +V P+S IDIF+ ++
Sbjct: 89 RLNVDVKF--APFSC-DRRRAPMRDAEDRSIAMAIHQAISSSVRLDVLPKSVIDIFITIV 145
Query: 127 QADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
++DG C A V A+ AL DAGI + V +CSA+ G+ +D S E L
Sbjct: 146 ESDGIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDIWLDPSLRESQESRGTLV 205
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
++ +P V+ + + ++ + +D C DIH+++
Sbjct: 206 LSCMPALSTVSSIWQTGNMNTGDVLACMDACNSRCTDIHSVI 247
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 16/233 (6%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G +GR ++R I + G+ SQ++GSAYIE TK++ AVYGPR ++ S G
Sbjct: 34 WNPGEPRNGRGASDIRPIFLKAGLISQANGSAYIETERTKLVCAVYGPRQSKSTSYSEKG 93
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+N + A FS R+ P D + I++ ++++++AA+ E+ P+S IDIF+ ++
Sbjct: 94 K--LNVEVKFAPFSCTRRRV-PNRDAEDRPIAMLIQRSLNAAVRLELFPKSTIDIFITII 150
Query: 127 QADGGNFCACVN--AATLALIDAGIPMREYVVACSASLAGDTP---LVDISHLEETLGGP 181
+ DG C AA+ AL A I M V++CSA+ D +D + E L
Sbjct: 151 ENDGIEGCVASGTVAASTALAQARIEMLGMVMSCSAANTADVGKELWLDPTDAESRLASG 210
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLP-RVLDC---ALKGCADIHAILDTAI 230
L +A LP G V + S K+ +P R +DC + CADIH+++ A+
Sbjct: 211 ILVLACLPALGIVTNVWQSGKM----IPARAIDCMKACQERCADIHSVVAQAL 259
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 1 MDLLTEY--GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
M ++ EY GLR DGRR +E R++ G S DG + G + V A VYGPR V
Sbjct: 1 MPVIKEYINPAGLRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVS 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
N+ + V I +A F+ R+ + R R + +IS + + ++ +P SQ
Sbjct: 61 NRLDGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQ 120
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I I +EVL+ DG + AC+NAA LALIDA I MR+ V + L +VD++ E
Sbjct: 121 IHICIEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS 180
Query: 179 GGPNLTVAAL---PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P++ + P + + ME + +L + + R++ A K D + +TA++
Sbjct: 181 QCPSICITVQGHDPTN--IVWMESNSRLAPEVITRLVKVAQKASTD---VFETALR 231
>gi|426200127|gb|EKV50051.1| hypothetical protein AGABI2DRAFT_63232 [Agaricus bisporus var.
bisporus H97]
Length = 261
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 5/216 (2%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVF 79
++R I + G+ +Q++GSAYIE +TK+ AVYGPR +N S G +N + A F
Sbjct: 43 DVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKNVSYSESGH--LNVEVKFAPF 100
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG--GNFCACV 137
S R+ P D + I++ + QA+ +++ E+ P+S ID+FV V++ADG G +
Sbjct: 101 SCRRRRA-PLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADGIEGVIASAS 159
Query: 138 NAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVM 197
A + AL DAGI + VV+CSASL G +D S E + + V+ +P G V +
Sbjct: 160 IAVSTALADAGIEILGLVVSCSASLIGGGIWLDPSEDEISCSEGTIIVSCIPALGTVTSI 219
Query: 198 ELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
++ L + ++ C DIH I+ A++ +
Sbjct: 220 WQGGQIPLKSVVDAMEKCQSRCTDIHKIVAQALRGY 255
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 1 MDLLTEY--GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
M ++ EY GLR DGRR +E R++ G S DG + G + V A VYGPR V
Sbjct: 1 MPVIKEYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVS 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
N+ + V I +A F+ R+ + R R + +IS + + ++ +P SQ
Sbjct: 61 NRLDGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQ 120
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I I +EVL+ DG + AC+NAA LALIDA I MR+ V + L +VD++ E
Sbjct: 121 IHICIEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHS 180
Query: 179 GGPNLTVAAL---PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P++ + P + + ME + +L + + R++ A K D + +TA++
Sbjct: 181 QCPSICITVQGHDPTN--IVWMESNSRLAPEVITRLVKVAQKASTD---VFETALR 231
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 23/225 (10%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHGS 67
G R DGRR E RK ++GV S + GSAY+E GNTKV+ +V+ PR P +NK ++ G
Sbjct: 41 GKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCEL-GE 99
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + ++S F+ RKT + D + ++ L A++ ++ + P QID+F VL+
Sbjct: 100 LFCDLKFSP--FAPAVRKTH-QTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLE 156
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DG + AA LAL DA +PM + V A +A + GD ++D + EE A
Sbjct: 157 DDGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGDRVVMDPTAEEE----------A 206
Query: 188 LPLSGKV----AVMELSQKLHLDHLPRVLDCALKGCADIHAILDT 228
L L+G ++ L++ LD +P + G D+ + DT
Sbjct: 207 LCLAGHTEENHGLVMLAKLPTLDQVPEIWQ---YGFVDVELLWDT 248
>gi|407407934|gb|EKF31543.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi
marinkellei]
Length = 252
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G DG + G + V A+VYGPR V N+ +
Sbjct: 11 AGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLSTVCASVYGPREVTNRLEGKYNEC 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ + ++A F+ +R+ R + + E+S + + + ++ +P SQI I VEVL+
Sbjct: 71 IVTCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG + AC+NAA LAL+DA + MR+ V A + L +VD++ E P + +A
Sbjct: 131 DGSDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIAVK 190
Query: 189 ---PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHA 224
P S + ME S ++ + + R++ A K D+ A
Sbjct: 191 GHDPSS--IVWMESSCRVTSEVISRLVTVAQKSSEDVFA 227
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 7/225 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSV 68
G R D RR ++R I + G Q++GSAYIE GN KV+ AVYGPR ++ + G++
Sbjct: 29 GQRADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTL 88
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+F++ A FS +RK + D++ E S+ L QA++ +I E +P+ I +FV VL+
Sbjct: 89 QCDFKF--APFSGEKRKGYAKDDQE-KEFSMVLEQALTPSIRLENYPKFTIQVFVIVLEN 145
Query: 129 DG--GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL-VDISHLEETLGGPNLTV 185
DG A ++ A+LAL +AGI M + V A S + G++ L +D+S EE + + V
Sbjct: 146 DGSMSALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLDVSLKEEMVQDGAMLV 205
Query: 186 AALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +P +V + + + ++ + C+ IH IL A+
Sbjct: 206 SYMPSLNEVTHLIQTGLATTSQCTKAIELGVDACSQIHTILQEAL 250
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 30/242 (12%)
Query: 4 LTEYGG--GLRNDGRRGHELRKIRCRLG---VFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
L EY G R DGR+ E R I+ +G +F+ +DG A+ E GNTK+L+ + GP ++
Sbjct: 3 LVEYVNEEGYRIDGRKEDECRLIKISVGNENIFTDADGFAFYELGNTKLLSYIQGPTELK 62
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRK---TSEISLQLRQAVSAAIMSEVHP 115
E K + + K T+EIS +R I+ +++
Sbjct: 63 ----------------------KSEEKCSIKCETKDSVTNEISAYIRNICENIILLDLYK 100
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE 175
S+I+IF+ +++ DGG A +N LALIDAGI ++ ++ ACS + LVD + LE
Sbjct: 101 NSEINIFLYIIERDGGVKHAAINTCILALIDAGIAIKYFISACSVLYLQNRILVDGNQLE 160
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
G P LT+ + K+ ++E ++ +D ++ + C ++ ++ +K++ I
Sbjct: 161 INSGAPELTMVIELNTHKIILLEFDAEVPIDIFEAMVRTCMDCCVNLGNVMKLTVKENAI 220
Query: 236 KV 237
K+
Sbjct: 221 KL 222
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS-- 67
LR DGRR +ELR++ ++ SDGS+Y+ GNT+VL V GP P + +SI G+
Sbjct: 13 LRLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSN 72
Query: 68 ----VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ + S A F+ +RK R D++ E+S L + +++ + S I + +
Sbjct: 73 AGEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLSL 132
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD--------TPLVDISHLE 175
+L DG A +NA+TLALIDAGIPM Y+ AC+A PL+D+ +L
Sbjct: 133 HILSLDGSLLSALINASTLALIDAGIPMPSYICACTAGSTSSYSSNDEKADPLLDL-NLS 191
Query: 176 ETLGGPNLTVAALPLSGK-----VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
E P LTVA +G+ V + + ++ L +L + GC + ILD I
Sbjct: 192 EEQELPFLTVAT---AGEGDGDGVVALVMETRVQAGRLEGMLAVGVDGCKQVREILDGVI 248
Query: 231 KQHLIKVAG 239
+ K+ G
Sbjct: 249 RSRGKKMLG 257
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 1 MDLLTEY--GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
M ++ EY GLR DGRR +E R++ G S DG + G + V A VYGPR V
Sbjct: 1 MPVIKEYINPAGLRLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVS 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
N+ + V I +A F+ R+ + R R + +IS + + ++ +P SQ
Sbjct: 61 NRLEGKYNEVTITCDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQ 120
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I I +EVL+ DG + AC+NAA LALIDA I M++ V + L +VD++ E
Sbjct: 121 IHICIEVLKQDGSDKAACINAACLALIDASIAMKDVVYTQTVGLIEGFDVVDLTTEEIHS 180
Query: 179 GGPNLTVAAL---PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P++ + P + + ME + +L + + R++ A K D + +TA++
Sbjct: 181 QCPSICITVQGHDPTN--IVWMESNSRLAPEVITRLVKVAQKASTD---VFETALR 231
>gi|358059015|dbj|GAA95196.1| hypothetical protein E5Q_01851 [Mixia osmundae IAM 14324]
Length = 290
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 6/183 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFS--QSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKVH 65
LR D RR E+R I C L V + DGSA +EQG T+V +V GPR R
Sbjct: 12 LRLDSRRPLEVRPITCTLDVLKGLEIDGSASVEQGLTRVSVSVCGPREPRAARGAGNARQ 71
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
V+IN + A FS +R+ R R DR+T E++ ++ IM +++PR+QIDI+V +
Sbjct: 72 DRVVINVEIQTATFSGVDRRKRGRNDRRTVEMASSIKNTFEPVIMGQLYPRAQIDIYVII 131
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTV 185
LQ DGG A +NA +LAL AGI M + + S + DTPL+D EE+ P LTV
Sbjct: 132 LQQDGGTLSAAINATSLALSHAGIAMISPIASISVACLHDTPLLDPCGQEES-ELPFLTV 190
Query: 186 AAL 188
A L
Sbjct: 191 ACL 193
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 5/221 (2%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR H+ R R G + + GSAY E GNTKV+ +V+GPR + K++ +N
Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDKGKLN 99
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
S F+T T E S L +A+ A+M E P++ +D+F VL++ G
Sbjct: 100 CNVSYTTFAT----TVHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLESGGS 155
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
+ ++ A+LAL DAGI M + V S S G ++D + EE+ +L + +P
Sbjct: 156 DLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPTLEEESFQDGSLMITCMPSH 215
Query: 192 GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + +L + L C+ + IL + +K+
Sbjct: 216 YEITQLTITGEWSTANLNEAMQLCLDACSKLAKILRSCLKE 256
>gi|299753339|ref|XP_001833208.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
gi|298410256|gb|EAU88481.2| mRNA transport regulator 3 [Coprinopsis cinerea okayama7#130]
Length = 259
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 5/230 (2%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G+ R +R I + G+ Q++GSAYIE G TK+ A+YGPR ++K++ H
Sbjct: 32 WKPGMSRQDRLPLAIRPIFLQPGLIEQANGSAYIETGKTKIACAIYGPR--QSKNVAFHD 89
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+N + A FS +R+ P D + I++ + QA+ ++ E P+S +D+F+ VL
Sbjct: 90 KGRLNVELKFAPFSCPKRRA-PIRDAEDRSIAMAIHQAILPSVRLETLPKSTVDVFITVL 148
Query: 127 QADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
+ DG C A AA+ AL+DAGI + V + SA++ G+ +D S E +
Sbjct: 149 EEDGIEGCVAAGSVAASAALVDAGIEVFGIVASTSAAVIGEEIWLDPSEQESSQSKGTFV 208
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+A +P + + + ++ D + + ++ K C DIH ++ +++ L
Sbjct: 209 LATMPALNTITSIWQNGEMAPDQVLKAMEICEKQCVDIHTVVAERLRETL 258
>gi|71649471|ref|XP_813459.1| exosome complex exonuclease RRP41A [Trypanosoma cruzi strain CL
Brener]
gi|70878342|gb|EAN91608.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 195
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G DG + G V A+VYGPR V N+ +
Sbjct: 11 AGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNEC 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I + ++A F+ +R+ R + + E+S + + + ++ +P SQI I VEVL+
Sbjct: 71 IITCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DG + AC+NAA LAL+DA + MR+ V A + L +VD++ E P + +A
Sbjct: 131 DGSDKAACINAACLALVDASVAMRDIVYAQTVGLINAVDVVDLTTEEMRSQCPTICIA 188
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 8/223 (3%)
Query: 12 RNDGRRG--HELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN--KSIKVHGS 67
R D RG E+R+ +LG S + GSAY+E G T+V+ AVYGPR + G
Sbjct: 26 RLDKTRGSSDEMRRPFMQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDTRARREFSKDGQ 85
Query: 68 VLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ + +Y A F+ + R RG D E+S + +A++ A+M P+ + +FV VL
Sbjct: 86 LVCDVKY--APFADKLTR-RERGQDPDEMELSAIVEEALAPAVMLHKLPKCIVSVFVTVL 142
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
+ +GG F A +N A+LAL DA + M + V A SA + + ++D S EE G L +A
Sbjct: 143 EDEGGVFAAAINCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALA 202
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229
+P G+V M + ++H L +D C + L TA
Sbjct: 203 YMPSMGRVTYMLQAGQIHHTQLQEAVDLCTDACTGVMRTLLTA 245
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
LR DGR H+ R R G + + GSAY E GNTKV+ +V+GPR +K V+ V
Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPR--ESKKAMVYSDVGR 91
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N S F+T R D K E S L +A+ AIM E P++ +D+F VL++
Sbjct: 92 LNCNVSCTTFATPARGLG--SDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLESG 147
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + V S S G ++D EE+ +L + +P
Sbjct: 148 GSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMP 207
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+V + ++ + L + L C+ + I+ +K+
Sbjct: 208 SRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLKE 250
>gi|295663905|ref|XP_002792505.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279175|gb|EEH34741.1| 3' exoribonuclease family [Paracoccidioides sp. 'lutzii' Pb01]
Length = 296
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 44/277 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR ++ ++ + GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPRG--------DRKTS-EISLQLRQAVSAAIMSEVHPRSQI 119
+I+ ++A FS +RK + DR+ S ++++ LR A + + ++P S I
Sbjct: 74 VISVAVNIAGFSGVDRKKKSLAAGGGGGGGDRQASTDLAVALRDAFQPHLHTHLYPHSTI 133
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT------------- 166
+ + VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMKRVGG 193
Query: 167 ------PLVDISHLEETLGGPNLTVA-ALPL-SGK-----------VAVMELSQKLHLDH 207
PL+D+S EE P +TVA + P SG ++V+++ +H+ +
Sbjct: 194 INESLDPLLDMSMPEEQ-ELPFMTVANSNPAPSGHDSMDDEEDNQMLSVVQMESGVHISY 252
Query: 208 LPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
L + L GC + IL+ IK KV G G
Sbjct: 253 LETMFAVGLDGCKQVREILNGVIKAAGRKVLEGEGEG 289
>gi|409082295|gb|EKM82653.1| hypothetical protein AGABI1DRAFT_97612 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 261
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 116/216 (53%), Gaps = 5/216 (2%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVF 79
++R I + G+ +Q++GSAYIE +TK+ AVYGPR +N S G +N + A F
Sbjct: 43 DVRPIFLQPGLITQANGSAYIETEHTKIACAVYGPRQSKNVSYSESGH--LNVEVKFAPF 100
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG--GNFCACV 137
S R+ P D + I++ + QA+ +++ E+ P+S ID+FV V++ADG G +
Sbjct: 101 SCRRRRA-PLRDAEDRTIAIAVHQAIVSSVRLELLPKSTIDVFVTVIEADGIEGVIASAS 159
Query: 138 NAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVM 197
A + AL DAGI + VV+CSASL G +D S E + + V+ +P G V +
Sbjct: 160 IAVSTALADAGIEIFGLVVSCSASLIGGGIWLDPSEDEVSCSEGTIIVSCIPALGTVTSV 219
Query: 198 ELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
++ + ++ C DIH I+ A++ +
Sbjct: 220 WQGGQIPPKSVVDAMEKCQSRCTDIHKIVAQALRGY 255
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
LR DGR H+ R R G + + GSAY E GNTKV+ +V+GPR +K V+ V
Sbjct: 34 LRPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPR--ESKKAMVYSDVGR 91
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N S F+T R D K E S L +A+ AIM E P++ +D+F VL++
Sbjct: 92 LNCNVSCTTFATPARGLG--SDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLESG 147
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + V S S G ++D EE+ +L + +P
Sbjct: 148 GSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMP 207
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+V + ++ + L + L C+ + I+ +K+
Sbjct: 208 SRYEVTQLSITGEWSTAKLNEAMHLCLDACSKLDKIMRACLKE 250
>gi|429328435|gb|AFZ80195.1| exosome complex exonuclease RRP41, putative [Babesia equi]
Length = 254
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 12/237 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGV-----FSQSDGSAYIEQGNTKVLAAVYGP----RPVRNK 60
GLR DGRR E+R I G S DG++ I+ G KV V GP + +R
Sbjct: 11 GLRIDGRREREVRNIEIACGFECDVDISGYDGASQIKHGLNKVQVLVKGPSEGGKALRGA 70
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ SV I + +FST + + DR ++I ++ AI+ +++ R I
Sbjct: 71 QRALDDSVDIRVE---VMFSTDKGPKSSKNDRMVTDIVNAIKGTFGEAIIQDMYKRLAIR 127
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IFV +++ADGG +NA +ALIDAGI +R+ +CS L + D +HLE
Sbjct: 128 IFVNIIEADGGIKSTVLNAVGVALIDAGIALRDLTSSCSVVLLENRIFTDGNHLEINAAT 187
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
LTVA SGK+ ++L K+ + L + D ++G I ++ H ++
Sbjct: 188 AELTVAVYSSSGKMIYVDLRSKVPVKELDDLFDACVRGTGHFSRIAKEKLRSHAFEI 244
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 124/237 (52%), Gaps = 15/237 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLI 70
R+DGR +ELR I + G+ SQ+ GSAYIE GNTK++ +V+ PR V NK+ V G +
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F++ A FS +RK + D + E SL L++A+ A+ + P Q+D++ VL G
Sbjct: 97 EFKF--APFSHHKRKMH-QQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGG 153
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN-------- 182
A + AA+LAL +AG+PM V A + + T LVD + EET
Sbjct: 154 SALAAAIMAASLALANAGVPMFGLVTASTVGIYDHTYLVDPTDTEETFCCTKSVPGTVHN 213
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+ AALP G+++ M + + D + +D + DI +L+ + + + K
Sbjct: 214 HGIIIQAALPQHGQISEMFVVGSVDTDTIVHSMDLISEAHKDICPLLEQCLVKTVFK 270
>gi|407849042|gb|EKG03905.1| exosome complex exonuclease RRP41A, putative [Trypanosoma cruzi]
Length = 252
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G DG + G V A+VYGPR V N+ +
Sbjct: 11 AGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNEC 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I + ++A F+ +R+ R + + E+S + + + ++ +P SQI I VEVL+
Sbjct: 71 IITCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DG + AC+NAA LAL+DA + MR+ V A + L +VD++ E P + +A
Sbjct: 131 DGSDKAACINAACLALVDASVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIA 188
>gi|71665831|ref|XP_819881.1| ribosomal RNA processing protein 41A [Trypanosoma cruzi strain CL
Brener]
gi|70885202|gb|EAN98030.1| ribosomal RNA processing protein 41A, putative [Trypanosoma cruzi]
Length = 252
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR E R++ G DG + G V A+VYGPR V N+ +
Sbjct: 11 AGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNEC 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I + ++A F+ +R+ R + + E+S + + + ++ +P SQI I VEVL+
Sbjct: 71 IITCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQIHICVEVLRQ 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DG + AC+NAA LAL+DA + MR+ V A + L +VD++ E P + +A
Sbjct: 131 DGSDKAACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIA 188
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN--KSIKVHGSVLINFQYSMA 77
E+R+ +LG S + GSAY+E G T+VL AVYGPR + G ++ + +Y A
Sbjct: 36 EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKY--A 93
Query: 78 VFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
F+ + R RG D E+S + +A++ A+M P+ I +FV +L+ DGG A
Sbjct: 94 PFADKLTR-RERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAA 152
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAV 196
+N A+LAL DA + M + V A SA + + ++D S EE G L +A +P G+V
Sbjct: 153 LNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTY 212
Query: 197 MELSQKLHLDHLPRVLDCALKGCAD-IHAILDTAIKQHL 234
M + K+H L +D C I ++L ++ Q L
Sbjct: 213 MLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASLVQAL 251
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 18/204 (8%)
Query: 29 GVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88
G SQ+ GSAY E GNTKV+A VYGPR K VFST E + +
Sbjct: 4 GTLSQAAGSAYAEFGNTKVIAGVYGPREAERKE----------------VFST-EGRLQC 46
Query: 89 RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAG 148
D + E+S+QL+ A+ AA+ + P++ +DI+ VL++ G + C+ AA+LAL DAG
Sbjct: 47 DNDEE-RELSVQLQTALEAAVRLQTFPKANVDIYCLVLESAGADLAVCICAASLALADAG 105
Query: 149 IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHL 208
I M + V ACS S L+D + E + +A +P + V+ + L+ +
Sbjct: 106 IEMEDMVSACSVSRVDGHLLLDPTIDEAYREDGSALLAMMPSANAVSQVVLTGQWSNAQA 165
Query: 209 PRVLDCALKGCADIHAILDTAIKQ 232
VL + GCA I A + +IK+
Sbjct: 166 SEVLQLCMGGCAQIDAYMRQSIKE 189
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 42/269 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S S GS+Y+ GNT ++ V+GP L+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGSATE--ALV 71
Query: 71 NFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ ++A F+ +RK R G DR++S++S L+ A + + + ++P S I + V VL +D
Sbjct: 72 DIDVNIAGFAGVDRKRRAGGSDRQSSQLSTALKSAFQSHLHTYLYPHSTITVQVSVLSSD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAG--DTPLVDIS--------------H 173
G F A +NA TLAL+DAGIPM + AC+A ++G TP D+S
Sbjct: 132 GSLFAAAINACTLALVDAGIPMPGLLCACTAGMSGSASTPR-DLSGSDQDQLDPLLDLSL 190
Query: 174 LEE------TLGGPNLTVAALPLSG------------KVAVMELSQKLHLDHLPRVLDCA 215
EE T+G T ALP KV+V+ + + H +L +L
Sbjct: 191 PEEQELPFITIG----TTTALPAGSAVGAEDDVDDDMKVSVLHMETRAHTSYLDAMLAVG 246
Query: 216 LKGCADIHAILDTAIKQHLIKVAGARGLG 244
+ GC I IL+ IK VA G G
Sbjct: 247 IDGCKQIREILEGVIKGSNAGVAPVYGGG 275
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 54/264 (20%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGRR +ELR ++ ++ S GS+Y+ GNT VL V+GP K + G+
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGP--AEGKRSETAGAA-- 69
Query: 71 NFQYSMAVFSTGERKTRPRGDRK-TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
Q + +G GDR+ T+E++ LR A I + ++PRS I + V VL +D
Sbjct: 70 -AQKKKSTTGSGG------GDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSD 122
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT--------------------PLV 169
G F AC+NA TLAL+DAGIPM + AC+ ++G PL+
Sbjct: 123 GSLFAACLNACTLALVDAGIPMPGLLCACTVGMSGRASTPAVTAESAQIGGINESLDPLL 182
Query: 170 DISHLEE----------TLGGPNLTV------------AALPLSGKVAVMELSQKLHLDH 207
DIS EE T P++TV A + ++++ + +H+ +
Sbjct: 183 DISAPEEVELPYMTVANTNPMPDITVPKDGEDEEDDEYDAENENQMLSIVHMDSGVHVSY 242
Query: 208 LPRVLDCALKGCADIHAILDTAIK 231
L + + GC IL+ +K
Sbjct: 243 LETMFAVGIDGCKQTREILNGVLK 266
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 15/238 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLI 70
R+D R +ELR I + G+ SQ+ GSAYIE GNTKV+ +V+ PR + NK+ + G +
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPREIPNKTGFCMQGELFC 96
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F++ A FS +RK + D + E SL L++A+ A+ + P Q+D++ VL G
Sbjct: 97 EFKF--ASFSHRKRKLH-QQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGG 153
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN-------- 182
A + AA+LAL +AG+PM V A + + T LVD + +EE
Sbjct: 154 SALAAAIMAASLALANAGVPMFGLVTASTIGICKGTYLVDPTDIEENFCSTKAASDTTND 213
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ AALP G+++ M + +++D + +D K DI +L+ + + + +
Sbjct: 214 HGIIVQAALPQHGQISEMFVIGSINMDTMEYSMDLLSKAHKDICPLLEQCLVKTVFRT 271
>gi|336367598|gb|EGN95942.1| hypothetical protein SERLA73DRAFT_185379 [Serpula lacrymans var.
lacrymans S7.3]
Length = 260
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 13/231 (5%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQ 73
+GR ++R I + G+ +Q++GSAYIE TK+ AVYGPR + + +G +N +
Sbjct: 38 EGRSPQDIRPIFLQPGLINQANGSAYIETDKTKIACAVYGPRQSKTTTFSENGR--LNVE 95
Query: 74 YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
+ FS RK P D + +++ + QAV +++ E+ P+S ID+F+ +++ DG
Sbjct: 96 VKFSPFSCARRKA-PLRDAEDRSLAVSIHQAVLSSVRLELLPKSTIDVFITIIENDGIE- 153
Query: 134 CACVNAATLAL----IDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
C+++ T+A DAGI + V +CSA+ GD +D + E L +A +P
Sbjct: 154 -GCISSGTIAASAALADAGIEVLGLVASCSAAALGDEIWLDPTEKEARKSEGTLILACMP 212
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
G V + S ++ ++ + LD + C DIHA+ + Q L++ + A
Sbjct: 213 ALGIVTNVWQSGRMTVEKATQCLDLCQERCTDIHAV----VAQSLLETSKA 259
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 40/260 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK + GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 167 --PLVDISHLEETLGGPNLTVA---ALPLSGK----------VAVMELSQKLHLDHLPRV 211
PL+D+S EE P +TVA P ++++++ +H+ +L +
Sbjct: 194 LDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 212 LDCALKGCADIHAILDTAIK 231
L GC + IL+ +K
Sbjct: 253 FAVGLDGCKQVREILNGVVK 272
>gi|226287267|gb|EEH42780.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 300
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 132/281 (46%), Gaps = 48/281 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI--KVHGSV 68
LR DGRR +ELR ++ ++ + GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPATSGSSYLAMGNTIVICMVHGPAEGRRSEATGSAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRP------------RGDRKTS-EISLQLRQAVSAAIMSEVHP 115
+I+ ++A FS +RK + GDR+ S ++++ LR A + + ++P
Sbjct: 74 IISVAVNIAGFSGVDRKKKSLAAGAGGGGGGGGGDRQASTDLAIALRDAFQPHLHTHLYP 133
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT--------- 166
S I + + VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 HSTISLNISVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPATPEMK 193
Query: 167 ----------PLVDISHLEETLGGPNLTVAAL--------PLSGK-----VAVMELSQKL 203
PL+D+S EE P +TVA P+ + ++V+++ +
Sbjct: 194 RVGGINESLDPLLDMSMPEEQ-ELPFMTVANSNPAPPGHDPMDDEEDNQMLSVVQMESGV 252
Query: 204 HLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
H+ +L + GC + IL+ +K KV G G
Sbjct: 253 HISYLETMFAVGFDGCKQVREILNGVLKAAGRKVLEGEGEG 293
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 40/260 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI--KVHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK + GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 167 --PLVDISHLEETLGGPNLTVA---ALPLSGK----------VAVMELSQKLHLDHLPRV 211
PL+D+S EE P +TVA P ++++++ +H+ +L +
Sbjct: 194 LDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 212 LDCALKGCADIHAILDTAIK 231
L GC + IL+ +K
Sbjct: 253 FAVGLDGCKQVREILNGVVK 272
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLINFQYSMAVFSTGERK 85
+ G+ SQ+ GSAYIEQ TKV+ AVYGPR V K + G + F++ A FS R+
Sbjct: 204 KAGIISQARGSAYIEQNETKVMCAVYGPREVTKKEEFSMKGQLTCEFKF--ATFSCRVRR 261
Query: 86 TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALI 145
+ + D + + S QL+ A+ A+ + P++Q++++V VLQ DG A + A++AL
Sbjct: 262 -QYQQDNEERDYSCQLQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALA 320
Query: 146 DAGIPMREYVVACSASLAGDTPLVDISHLEE-------TLGGPNLTVAALPLSGKVAVME 198
+AGI M + VV CSA + +D + E+ G ++T+ +P +V+ +
Sbjct: 321 NAGIEMYDLVVGCSARITPSEVFIDPTESEDYKAENDNEAGNGSVTLGLMPSLNQVSAIT 380
Query: 199 LSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ + L + + C ++ +L A+
Sbjct: 381 SKGEVEFELLNKGTKQCVDVCQKLYPVLQQAV 412
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 2/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R+DGR+ E R + G + + GSAY E G+TKV+ +V+GPR I L
Sbjct: 30 GIRSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRL 89
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
N S A FST R +G E S L +A+ A+M P++ +D+F VL++
Sbjct: 90 -NCSVSFATFSTPIRGKLSQGTEH-REYSTMLHKALEGAVMLNTFPKATVDVFALVLESG 147
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG+ + ATLAL DAGI M + V A S S G + ++D + EE L VA P
Sbjct: 148 GGDLPVVITCATLALADAGIMMFDVVSAVSVSSIGKSLIIDPTTEEENCQDGGLMVACTP 207
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + + L+ L C+ + AI+ + +K+
Sbjct: 208 SRNEITQLIITGEWSSTRVSEALELCLDACSKLAAIMRSCLKE 250
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 7/223 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
LR DGR + R R G + + GSAY E GNTKV+ +V+GPR +K V+ V
Sbjct: 34 LRPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPR--ESKKAMVYSDVGR 91
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N S F+T R D K E S L +A+ AIM E P++ +D+F VL++
Sbjct: 92 LNCNVSCTTFATPARGLG--SDNK--EFSSMLHKALEGAIMLETFPKTTVDVFALVLESG 147
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + V S S G ++D EE+ +L + +P
Sbjct: 148 GSDLPVVISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPILEEESFQDGSLMITCMP 207
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+V + ++ + L + L C+ + I+ +K+
Sbjct: 208 SRYEVTQLSITGEWSTAKLNEAMQLCLDACSKLDKIMRACLKE 250
>gi|340057336|emb|CCC51681.1| putative RRP41p homologue [Trypanosoma vivax Y486]
Length = 252
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR HE R++ G G + G + V A VYGP V N+ H V
Sbjct: 11 AGLRLDGRRPHESRRLTMEFGKSPDCGGRCTVTAGLSHVCATVYGPCEVTNRLDTKHSEV 70
Query: 69 LINFQYSMAVFSTGERKTRP-RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+I + +A F+ GER+ P R + + EIS + + + + +P SQI I +EVL+
Sbjct: 71 VITCEVVVAAFA-GERRREPQRRSKLSEEISTAVLEVARSTVFLSYYPNSQIHICIEVLR 129
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DG + AC+NAA LAL+DA + MR+ + A + +VD++ E P + +
Sbjct: 130 QDGNDKAACINAACLALVDANVAMRDIIYAQTVGFMEGVDVVDLTTEELHSYCPFICICV 189
Query: 188 -LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHA-ILDTAIKQH 233
+ + ME + ++ + + R++ A K A +L +++QH
Sbjct: 190 QCHDTSNIVWMESNSRVAPEVITRLVSVAQKTAQHTFATVLRGSLEQH 237
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 41/261 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK + GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGGINE 193
Query: 167 ---PLVDISHLEETLGGPNLTVA---ALPLSGK----------VAVMELSQKLHLDHLPR 210
PL+D+S EE P +TVA P ++++++ +H+ +L
Sbjct: 194 SLDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLET 252
Query: 211 VLDCALKGCADIHAILDTAIK 231
+ L GC + IL+ +K
Sbjct: 253 MFAVGLDGCKQVREILNGVVK 273
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 116/238 (48%), Gaps = 15/238 (6%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGS 67
G R GR E R + R G+ SQ+ GS+YIE TKV +V+ PR V G
Sbjct: 39 NGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQ 98
Query: 68 VLINFQYSMAVFST-GERKTR-PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y A FS GERK P D + +S+ L++A+ A+ + P QIDIF+ +
Sbjct: 99 LYCEVKY--APFSCRGERKALVPDSDERA--LSVALKKALEPAVCRHLFPNYQIDIFIYI 154
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-----G 180
L+ DG A +NAA LAL DA +PM + + A S +++GD VD + EE L G
Sbjct: 155 LENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQLAIRDHEG 214
Query: 181 PN---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
N +T++ LP +V+ + D + L K C I + + Q+ I
Sbjct: 215 VNHGVITMSMLPELQQVSDYRQIGSMDADCVLNALSILEKECKKIVPYVQRVLVQNAI 272
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGS 67
G R GR E R + R G+ SQ+ GS+YIE TKV +V+ PR V G
Sbjct: 39 NGRRKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQ 98
Query: 68 VLINFQYSMAVFST-GERKTR-PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y A FS GERK P D + +S+ L++A+ A+ + P QIDIF+ +
Sbjct: 99 LYCEVKY--APFSCRGERKALVPDSDERA--LSVALKKALEPAVCRHLFPNYQIDIFIYI 154
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
L+ DG A +NAA LAL DA +PM + + A S +++GD VD + EE L
Sbjct: 155 LENDGACLPAAINAAGLALSDAAVPMYDIITASSLAISGDKVFVDPTDDEEQLA 208
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 42/273 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK R GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 167 --PLVDISHLEETLGGPNLTVA---ALPLSGK------------VAVMELSQKLHLDHLP 209
PL+D+S EE P +TVA P ++V+++ +H+ +L
Sbjct: 194 LDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLE 252
Query: 210 RVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+ L GC + IL+ +K KV G
Sbjct: 253 TMFAVGLDGCKQVREILNGVLKAAGRKVLEGEG 285
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 42/273 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK--VHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK R GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAAPELARVGGINES 193
Query: 167 --PLVDISHLEETLGGPNLTVA---ALPLSGK------------VAVMELSQKLHLDHLP 209
PL+D+S EE P +TVA P ++V+++ +H+ +L
Sbjct: 194 LDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDEEGEENQMLSVVQMESGVHISYLE 252
Query: 210 RVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+ L GC + IL+ +K KV G
Sbjct: 253 TMFAVGLDGCKQVREILNGVLKAAGRKVLEGEG 285
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 22 RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS--IKVHGSVLINFQYSMAVF 79
R + R G SQ+ GS+Y+E G+TK++A+VYGPR V + G ++ +F+ A F
Sbjct: 44 RPVYIRAGQTSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFR--RAPF 101
Query: 80 S-TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
S G+R+ +R+ E+SL L++A+ A+ +PR+Q++++V VL+ G + +
Sbjct: 102 SGRGKRRVPSSNNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGAILASGII 161
Query: 139 AATLALIDAGIPMREYVVACSASLAGDTP---LVDISHLEETLGGPNLTVAALPLSGKVA 195
AA+LAL DAGI M + V ACS L+GD L+D EE LTVA +P+ +V+
Sbjct: 162 AASLALADAGIEMFDLVSACSLVLSGDAEPVWLLDPVLYEEQQACGGLTVALMPVRNEVS 221
Query: 196 -VMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
++ S+ + + ++GC ++ L
Sbjct: 222 GLLGSSEGCSAEVWAEGVRLGMEGCQRLYTTL 253
>gi|82793240|ref|XP_727962.1| exonuclease RRP41 [Plasmodium yoelii yoelii 17XNL]
gi|23484066|gb|EAA19527.1| exonuclease RRP41, putative [Plasmodium yoelii yoelii]
Length = 218
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 109/207 (52%), Gaps = 4/207 (1%)
Query: 29 GVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88
+ + +DG A+ E GNTK+L+ + GP ++ K I ++ F+ +++ +
Sbjct: 5 NISNDADGFAFYEIGNTKILSYIQGPTELK----KTDDKCSIKCDVFLSPFNVYDKRKKK 60
Query: 89 RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAG 148
D T+EIS +R I+ +++ S+I+IF+ +++ DGG A +N LALIDAG
Sbjct: 61 TKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERDGGIKHAAINTCILALIDAG 120
Query: 149 IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHL 208
I ++ ++ ACS + +VD + LE G P LT+ + K+ ++E ++ +D
Sbjct: 121 IAIKYFISACSVLYLQNKIIVDGNQLEINSGSPELTMVIELNTHKIILLEFDAEIPIDIF 180
Query: 209 PRVLDCALKGCADIHAILDTAIKQHLI 235
++ + C +I ++ +K++ I
Sbjct: 181 ESMVQTCIDSCINIGRVMKLTVKENAI 207
>gi|395333563|gb|EJF65940.1| mRNA transport regulator 3 [Dichomitus squalens LYAD-421 SS1]
Length = 261
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 5/232 (2%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
T + G GR ++R I + G+ +Q++GSAYIE TK+ AVYGPR ++K+
Sbjct: 30 TRWKPGKPRKGRGARDIRPIFLKAGLINQANGSAYIETERTKIACAVYGPR--QSKTTVY 87
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +N + A FS R+ P D + +++Q++QA+ +A+ E+ P+S IDIF+
Sbjct: 88 NEKGRLNVEVKFAPFSCKRRRV-PIRDAEDRSVAVQIQQALVSAVRLELLPKSTIDIFII 146
Query: 125 VLQADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
V++ DG C + AA+ AL DAGI M V +CSA++ G+ +D + EE +
Sbjct: 147 VIENDGMEGCIASGSVAASAALADAGIEMLGLVASCSAAVVGEEIWLDPTEEEEKVSSGT 206
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
L ++ +P G + + S + + + ++ + DIHA++ A+ +++
Sbjct: 207 LILSGMPALGTITNVWQSGSMAPEDAMKCMEACQERYTDIHAVIAQALLENV 258
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 15/238 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-SIKVHGSVLI 70
R D R+ ELRK+ +LGV SQ+ GSAYIE G TKV+ + + PR + NK S G +
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F++ A F+T +RK + D + E SL +++A+ A+ P Q+D++ VL G
Sbjct: 99 EFKF--ASFATCKRKGH-QQDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGG 155
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET----------LGG 180
A + A+LAL +A +PM V A +A + D L+D + EE L
Sbjct: 156 SALGAAIMGASLALANASVPMFGIVTAVTAGIYDDLLLLDPTDKEEALCLSVAKQKKLTN 215
Query: 181 PNLTVAALPLS-GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ + A+ L +++ L + +D + ++ K C+D+H IL ++ + ++K+
Sbjct: 216 HGIIMQAMLLQHDQISEFFLVGSMDVDCVNNSMELLSKTCSDVHPILQQSLTKLVMKM 273
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 15/244 (6%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKV 64
+Y R+D R +E+RKI + GV SQ+ GSAYIE G+TKV+ +V+ PR + NK+ V
Sbjct: 31 KYDSNNRSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCV 90
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G + F++ A FS +RK + + + + SL L++A+ A+ P Q+D++
Sbjct: 91 QGEIYCEFKF--ASFSCQKRKIH-QQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAM 147
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN-- 182
VL G A + AA+ AL AG+PM V A + + GD L+D + EET+
Sbjct: 148 VLDNAGSALAAAITAASTALASAGVPMFGLVTASTIGIYGDCFLMDPTDTEETMCNTTSD 207
Query: 183 ---------LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+T+A+LP G+V+ + L + D + R D DI ++ + +
Sbjct: 208 TKNNFNHGIITLASLPQHGQVSEIFLIGDIDTDSIMRATDVLTATNKDICPVVQQCLVKT 267
Query: 234 LIKV 237
++K+
Sbjct: 268 IMKL 271
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 17/227 (7%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLINFQYSMAVFSTGERK 85
+ G+ SQ+ GSAYIEQGNTK++ VYGPR V+ KS ++G + F++ A FS +R
Sbjct: 2 KTGIISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKF--APFSCQKR- 58
Query: 86 TRPRGDRKTSE---ISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATL 142
RG ++ +E +S LR+A+ AA+ P++Q+++ V V++ DG A + A+L
Sbjct: 59 ---RGHQQDNEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASL 115
Query: 143 ALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL-------GGPNLTVAALPLSGKVA 195
AL A IPM + ++ S L+D + EE NLTV +P + +V+
Sbjct: 116 ALASASIPMYDLMIGTSVRQIPKLFLLDPTKDEEWQPELNHDENNSNLTVGFMPSTHQVS 175
Query: 196 VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+ L ++L A + C + ++ +K+ + K+ G
Sbjct: 176 AYVHEGVSKTEDLEQMLKLATEYCLKVQPVVQLCLKETVEKILSNEG 222
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 11/230 (4%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---PVRNKSIKVHGSV 68
R DGR ++R I + GV SQ+ GSAY+E TKV+ VYGPR P +K G +
Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRL 64
Query: 69 LINFQYSMAVFST-GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ + +A F+T G R +GD + E S + +A+S A+M+E P++ +D+F VL+
Sbjct: 65 DVDVK--LATFATSGPRGKVAQGDAE-REFSSIVHRALSGAVMTETFPKTTVDVFATVLE 121
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP---LVDISHLEETLGGPNLT 184
A+G CA + AA+ AL +AG+ MR+ V AC+ A D P L+D + EE +T
Sbjct: 122 ANGSELCATIAAASAALCEAGVAMRDLVSACTGGGA-DGPNALLLDPARGEEAAAEAGVT 180
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
+A + G+ + + + + L + A GCA + A L A++ +
Sbjct: 181 LAYMCRLGEASQVVATGTWDGESLDDAVQLAASGCARVDAALREALRSSV 230
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 16/236 (6%)
Query: 10 GLRNDGRRGHEL--RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R DGR+ ++ R + R G+ SQ+ GSAYIE G+TK+L +VYGPR K
Sbjct: 32 GARADGRQRDQVDVRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKC 91
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ A FS ER + +G + + SL L++++ A+ +PRSQI++ V VL+
Sbjct: 92 GRLTTDMRFAPFSCPERGSWIQGSQDKN-FSLMLQESLQPALCLHKYPRSQIEVNVMVLE 150
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL-------GG 180
G + A+LAL DAGI M + V+ CS G + +VD ++ EE+ GG
Sbjct: 151 NSGSVQAHAITCASLALADAGIEMYDLVLGCSIRQDGSSYVVDPTYSEESNWSSSEHQGG 210
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
LTVA LP +V+ ++ ++ + L + ++GC ++ + I+Q L+K
Sbjct: 211 --LTVAFLPSLNQVSGLQSDGEMAEETLTAGIRTCIEGCYKLYPV----IQQALVK 260
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS--- 67
LR DGRR +ELR ++ ++ S GS+Y+ GNT ++ +V+GP R +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGGGAAGSG 73
Query: 68 -VLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ ++A F+ +RK R G DR++S I+ LR A + + + ++P S I I V V
Sbjct: 74 HAVVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG 164
L ADG A +NA TLAL+DAGIPM + C+A ++G
Sbjct: 134 LSADGSLLAAAINACTLALVDAGIPMPGLLCGCTAGMSG 172
>gi|342184387|emb|CCC93869.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 252
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 121/239 (50%), Gaps = 8/239 (3%)
Query: 1 MDLLTEY--GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR 58
M ++ EY GLR DGRR +E R++ G S DG + G + V A VYGPR V
Sbjct: 1 MPIIKEYVNPAGLRLDGRRPNEPRRLTLEFGKISGCDGCCTLTTGLSHVCATVYGPREVS 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
++ + V I +A F+ R+ R R + EIS + + ++ +P SQ
Sbjct: 61 SRLDGKYNEVTITCDVVVAAFAGERRREHQRRSRLSEEISASVLDVARSVVLLSQYPNSQ 120
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
I I VE+L+ DG + AC+NAA LALIDA I MR+ V A + L +VD++ E
Sbjct: 121 IHICVELLKQDGNDKAACINAACLALIDASIAMRDVVYALTVGLIDGLEIVDLTTEEIHS 180
Query: 179 GGPNLTVAAL---PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI-HAILDTAIKQH 233
P + +A P S + ME + +L + + ++++ A K D+ +L +++H
Sbjct: 181 QCPTVCIAVQGHDPAS--IIWMESNSRLAPEVVTKLVNVAQKVSGDVFETVLRRPLEEH 237
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 7/222 (3%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR H+ R R G + + GSAY E GNTKV+ +V+GPR + K++ + +N
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDTGRLN 91
Query: 72 FQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
S FST R +G D K E S L +A+ AI+ + P++ +D+F VL++ G
Sbjct: 92 CNVSYTTFST---PVRGQGSDHK--EYSSMLHKALEGAIILDSFPKTTVDVFALVLESSG 146
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
+ ++ A+LAL DAGI M + V + S S G ++D EE +L + +P
Sbjct: 147 SDLPVVISVASLALADAGILMYDLVASVSVSCLGKNLVIDPIFEEENSQDGSLMITCMPS 206
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + + + L CA + I+ + +K+
Sbjct: 207 RYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKE 248
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++R I +L + DGS +QG T+V+ V GPR K +L+
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRA------KTQSELLL- 57
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+YS++ FS E K + D+ S + L+++ I+ + + +S+I I V V+Q DG
Sbjct: 58 IEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGS 117
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLS 191
+ A NA TLAL+DAG+ M++++V+ + L +VD++ E LT++
Sbjct: 118 SKSAVFNAITLALLDAGVSMKDFLVSVTVGLDQGNLIVDLTQEESKTAQGELTISYQSRK 177
Query: 192 GKVAVMELS----QKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
K+ EL Q+ +D L ++ A+ +I+ + I Q
Sbjct: 178 QKIDFYELKTLKLQQQEMDQLSKL---AVSKADEIYQWMKEEIYQ 219
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 20/204 (9%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
++E+ R DGR+ +E+R RC LG ++DGS +EQG T+V+AAVYGP R ++ +
Sbjct: 1 MSEFLSSGRRDGRKAYEIRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRN-E 59
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISL---QLRQAVSAAIMSEVHPRSQID 120
+ ++ RP T + L +L++ A I +E+ PRS +
Sbjct: 60 LPDRTFVDV------------SIRPFQGYTTDYLRLRERELKEIFDATIATEIQPRSCVT 107
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-DTPLVDISHLEETLG 179
I +++++ DG A +NA L+L+ AGIP +C+ S G D L+D + +EE L
Sbjct: 108 IVIQIIENDGSLMAAVINACMLSLLSAGIPCHWLAASCTVSYRGKDGVLLDPTLVEE-LE 166
Query: 180 GPNLTVAALPLSGKVAVMELSQKL 203
G +V + G +V LSQ L
Sbjct: 167 GYATSVISYGYEGPQSV--LSQNL 188
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 32 LAEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 90
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +N S F+TG R +G D K E S L +A+ A+M + P++ +D+F
Sbjct: 91 YSDTGRLNCNVSYTTFATG---IRGQGLDNK--EYSEMLHKALEGAVMLDTFPKTTVDVF 145
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE
Sbjct: 146 ALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGG 205
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
L V+ +P ++ + L+ + + ++ + C+ + IL +K
Sbjct: 206 LLVSYMPTRKEITQLTLTGEWSDGKITNAVELCMDACSKLCEILRERLKD 255
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 40/249 (16%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI--KVHGSV 68
LR DGRR +ELR ++ ++ S GS+Y+ GNT V+ V+GP R
Sbjct: 14 LRLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGA 73
Query: 69 LINFQYSMAVFSTGERKTRPR----GDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+++ ++A FS +RK + GDR+ S +++ LR A + + ++P S I + V
Sbjct: 74 VVSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHV 133
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------- 166
VL +DG F AC+NA TLAL+DAGIPM + AC+ ++G
Sbjct: 134 SVLSSDGSLFAACINACTLALVDAGIPMPGLLCACTVGMSGRASTPAEPELTRVGGINES 193
Query: 167 --PLVDISHLEETLGGPNLTVA---ALPLSGK----------VAVMELSQKLHLDHLPRV 211
PL+D+S EE P +TVA P ++++++ +H+ +L +
Sbjct: 194 LDPLLDMSMPEEQ-ELPFMTVANTNPAPTGDDSMDDQEENQMLSIVQMGAGVHISYLETM 252
Query: 212 LDCALKGCA 220
L GCA
Sbjct: 253 FAVGLDGCA 261
>gi|393245504|gb|EJD53014.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 255
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQY 74
GR ++R I + G+ +Q++GSAYIE K+ AVYGPR +N + G +N +
Sbjct: 34 GRAPRDIRPIYLQTGLITQANGSAYIETERAKIACAVYGPRQPKNAAYSDKGK--LNVEV 91
Query: 75 SMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG--GN 132
A F+ R+ P D + I+ ++QA+ A+ E+ P+S +DIFV +L+ADG G
Sbjct: 92 KFAPFACRTRRV-PNKDAEDRSIANLVQQALLPAVRLELLPKSSLDIFVTILEADGLAGA 150
Query: 133 FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
A AA+ AL AGI M V AC+AS+ GD +D E+ G L +A +P G
Sbjct: 151 VAAASTAASAALAHAGIEMFGLVTACAASVVGDEVWLDPDEDEQARGRGTLVLACMPALG 210
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
V + + +L + + ++ + C D+H ++ A+
Sbjct: 211 SVTSVWQTGRLRVPEALQCMNECQERCTDVHFVVAKAL 248
>gi|353241256|emb|CCA73082.1| hypothetical protein PIIN_07036 [Piriformospora indica DSM 11827]
Length = 267
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR I G+ SQ++GSAYIE GNTK+ AVY PR ++N G +N
Sbjct: 37 RRDGRASEDLRPIFLTTGLVSQANGSAYIETGNTKIACAVYAPRQLKNTQYSDIGR--LN 94
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ A FS+ R+ R D + I + Q++ AI + P+S ID+F+ V++ DG
Sbjct: 95 VEVKFAPFSSVRRRAHLR-DVEDRTIGQLVHQSLLPAIQLHLFPKSSIDVFITVIENDGL 153
Query: 132 NFCA--CVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
C AA+ AL DAGI M VVAC A+L D +D E L +A +P
Sbjct: 154 EGCVASASIAASTALADAGIEMDGMVVACCAALYKDRIWMDPVTSERLAARGALLLAGIP 213
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
G + + S + + ++ DIH ++ AIKQ
Sbjct: 214 ALGTITNIWQSGNVTTKEALQCIEVCYAQFKDIHDVVVEAIKQ 256
>gi|342319558|gb|EGU11506.1| Hypothetical Protein RTG_02676 [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 137/299 (45%), Gaps = 75/299 (25%)
Query: 32 SQSDGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGSVL--------------------I 70
+++DG A G T V ++V+GPR P R G+ +
Sbjct: 50 AKADGYALASHGLTTVSSSVFGPREPQRTGPWSSTGTGQSAGGGVGQAAGGQQKGDRGSV 109
Query: 71 NFQYSMAVFSTGERKTRP--------RG--DRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
N + +A + GER + RG DR+T E++ ++ ++ ++PRS ID
Sbjct: 110 NVEVGVAGW--GERVGQGGSSEGGLRRGGKDRRTIELAAAVKNTFEPVLLLHLYPRSSID 167
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----------------- 163
I++++L+ DG A +NA +LALI AG+P+ +YV CS SLA
Sbjct: 168 IYLQILENDGSVLQAAINATSLALISAGLPLSDYV--CSLSLASYPSIPPLGPPQIPPFD 225
Query: 164 --------------------GDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKL 203
G T ++D+ EET PNLT+A LP SGKV+++ L +L
Sbjct: 226 LVTPAAAHTNSNDPTRTGGSGSTTILDLLAAEET-ALPNLTIAVLPRSGKVSLINLETRL 284
Query: 204 HLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG-LGRKFQ-LGQLTGKKKEEE 260
++ +L ++G + A + A++Q +A RG LG+ F G + G KE+E
Sbjct: 285 GVNRFEELLKWGVEGSKVVQAAMQDAVEQWASSLAPRRGALGQLFPGSGAVKGADKEDE 343
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 130/244 (53%), Gaps = 15/244 (6%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-SIKV 64
+Y R+D R +E+RKI + G+ SQ+ GSAYIE GNTKV+ +V+ PR V NK S
Sbjct: 31 KYDLSERSDKRTNNEMRKIFLKAGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNSYYA 90
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G + F++ A FS +RK + + + + SL L++A+ A+ P Q+D++V
Sbjct: 91 QGEIYCEFKF--APFSCQKRKVH-QQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVM 147
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL------ 178
VL G + A + AA+ AL +AG+PM V A + + + L+D + +EE +
Sbjct: 148 VLDNAGSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDIEEAICNTQPD 207
Query: 179 --GGPN---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
G N +T+A+LP +++ + L ++ + + + + DI +L + +
Sbjct: 208 NQGDFNHGIITLASLPQHNQISEVFLIGSINTNSVVQATEILTAANKDICPVLQQCLVKT 267
Query: 234 LIKV 237
++K+
Sbjct: 268 IMKL 271
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 3/224 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSV 68
G R DGR R R G + GSAY E G+TKV+ +V+GPR + ++ G +
Sbjct: 25 GERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRL 84
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
N +Y F+T R + + ++S L ++V A+ P++ +D+F VLQ+
Sbjct: 85 NCNVKY--CSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
GG+ V A+LAL DAGI + + V A S S L+D S EE +L VA +
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDLVAAVSVSSIQGQVLLDPSTSEENCEDGSLMVAYM 202
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P ++ + ++ + LD L CA I ++ + +K+
Sbjct: 203 PSRKEITQVTMTGEWSSSRASESLDLCLDACAKIGDVMRSCLKE 246
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 3/224 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSV 68
G R DGR R R G + GSAY E G+TKV+ +V+GPR + ++ G +
Sbjct: 25 GERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRL 84
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
N +Y F+T R + + ++S L ++V A+ P++ +D+F VLQ+
Sbjct: 85 NCNVKY--CSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQS 142
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
GG+ V A+LAL DAGI + + V A SAS L+D S EE +L VA +
Sbjct: 143 GGGDLPVIVTCASLALADAGIVLYDLVAAVSASSIQGQVLLDPSTSEENCEDGSLMVAYM 202
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P ++ + ++ + L+ L CA I ++ + +K+
Sbjct: 203 PSRKEITQVTMTGEWSSSRASESLELCLDACAKIGDVMRSCLKE 246
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 11/232 (4%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 31 LAEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 89
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +N S F+T R +G D K E S L +A+ A+M P++ +D+F
Sbjct: 90 YSDTGRLNCNVSYTTFAT---PMRGQGTDNK--EYSAMLHKALEGAVMLHTFPKTTVDVF 144
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE +
Sbjct: 145 ALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGS 204
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
L VA +P ++ + L+ + + ++ + C+ + IL ++HL
Sbjct: 205 LMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDIL----REHL 252
>gi|378730426|gb|EHY56885.1| hypothetical protein HMPREF1120_04949 [Exophiala dermatitidis
NIH/UT8656]
Length = 259
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 135/259 (52%), Gaps = 21/259 (8%)
Query: 1 MDLLTEYGGGL-RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN 59
+D ++ Y L R DGRR +ELR+I + SDGS+ + GNT VL V GPR R
Sbjct: 3 LDTISTYAQTLLRQDGRRWNELRRITASISTQPSSDGSSLLTMGNTMVLCTVTGPREGRG 62
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+ + +V + ++A F+ +R+ R + D++ E+ + A + + + ++PRS I
Sbjct: 63 QRDNTNATV--ETEINVAPFAQMDRRRRIKNDKRIQELQSTVSSAFQSHLFTHLYPRSTI 120
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA---SLAGDT-----PLVDI 171
I + VL DG AC+NAA+LAL+DAGIPM + A S+ + A D+ P++D+
Sbjct: 121 SISLHVLSLDGALLAACLNAASLALVDAGIPMPSILAAISSGSVTPADDSSVRPEPILDL 180
Query: 172 SHLEETLGGPNLTVAALP-----LSGKVAVMELSQKLHL----DHLPRVLDCALKGCADI 222
+ EE P L++A + KV+V+ + + + L ++ + GC +
Sbjct: 181 NTAEEQ-ELPFLSIATVTGQPPGAEDKVSVLMMESRCQIGGPNSKLESMMVTGVDGCKQV 239
Query: 223 HAILDTAIKQHLIKVAGAR 241
++ I++H KV +R
Sbjct: 240 RRTMEEVIRKHGAKVMQSR 258
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 5/222 (2%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR H+ R + G + + GSAY E GNTKV+ +V+GPR + K++ G+ +
Sbjct: 31 VRPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMAYSGTGRL 89
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
N S F+ R +G S+ L +A+ AI+ E P++ +D+F VL++ G
Sbjct: 90 NCNVSYTTFAM---PIRGQGSDHKGYSSM-LHKALEGAIIVESFPKTTVDVFALVLESGG 145
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
+ ++ A+LAL DAGI M + V + S S G ++D EE+ +L + +P
Sbjct: 146 SDLPVVISCASLALADAGIMMYDLVASVSVSCLGKNLVIDPILEEESYQDGSLLITCMPS 205
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+V + ++ + + + L+ C+ + I+ + +K+
Sbjct: 206 RNEVTQLTVNGEWSTPRVHEAMQICLEACSKLAKIIRSCLKE 247
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 18/209 (8%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHG 66
G R GR+ +E RK +LGV S + GS Y+E GNTKV+ +V+ PR P +NK + G
Sbjct: 39 SGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNK-FRALG 97
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ +F++S F+ RK P+ D + ++ + +A+ + + P QIDIF VL
Sbjct: 98 ELYCDFKFSP--FACIHRKN-PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVL 154
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL---GGPNL 183
+ DG A + AA LAL DA I M + V A + ++ D +D + EE L GG
Sbjct: 155 EDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTLAEERLCLEGGK-- 212
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVL 212
SG V+ L++ LD +L
Sbjct: 213 -------SGNHGVITLAKLHTLDQTSEIL 234
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 9/232 (3%)
Query: 10 GLRNDGRRGHELRKI------RCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSI 62
GLR DGRR E+R I C + + + DG A + QG TKV A + GP + R+K+
Sbjct: 11 GLRIDGRRPSEVRHIDILCGPECGVDIINY-DGVAQVTQGLTKVQAFINGPTDIGRSKTK 69
Query: 63 KVHGSVLINFQYSMAVFSTGERKTR-PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+ + + V ERK+ R + T EIS + I+S ++ S I I
Sbjct: 70 EGFETADSPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKNSTIHI 129
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP 181
FV VL+ADGG +NA +ALIDAGI M++ +VAC+A + +T L+D + LE
Sbjct: 130 FVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNETLLIDPNQLEINASIM 189
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
LT+A + ++ ++L K + +++ A+KG A+ +K +
Sbjct: 190 ELTLALSVSNEELIHIDLRSKYPIKSYAEIIEKAIKGSERFAALAKAKLKGY 241
>gi|336380311|gb|EGO21464.1| hypothetical protein SERLADRAFT_473839 [Serpula lacrymans var.
lacrymans S7.9]
Length = 281
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 13/216 (6%)
Query: 29 GVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88
G+ +Q++GSAYIE TK+ AVYGPR + + +G +N + + FS RK P
Sbjct: 74 GLINQANGSAYIETDKTKIACAVYGPRQSKTTTFSENGR--LNVEVKFSPFSCARRKA-P 130
Query: 89 RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLAL---- 144
D + +++ + QAV +++ E+ P+S ID+F+ +++ DG C+++ T+A
Sbjct: 131 LRDAEDRSLAVSIHQAVLSSVRLELLPKSTIDVFITIIENDGIE--GCISSGTIAASAAL 188
Query: 145 IDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLH 204
DAGI + V +CSA+ GD +D + E L +A +P G V + S ++
Sbjct: 189 ADAGIEVLGLVASCSAAALGDEIWLDPTEKEARKSEGTLILACMPALGIVTNVWQSGRMT 248
Query: 205 LDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240
++ + LD + C DIHA+ + Q L++ + A
Sbjct: 249 VEKATQCLDLCQERCTDIHAV----VAQSLLETSKA 280
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLI 70
R+DGR +E R I + G+ SQ+ GSAYIE GNTK++ +V+ PR + NK+ V G +
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F++ A FS +RK + D + E SL L++A+ A+ + P Q+D++ V+ G
Sbjct: 97 EFKF--APFSHRKRKLH-QQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDNGG 153
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN-------- 182
A + AA+LAL +AG+PM V A + + T LVD + EE
Sbjct: 154 SALAAAIMAASLALANAGVPMFGLVTASTVGICDQTYLVDPTDTEEAFCSIKTAQGTADN 213
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ AALP G+++ M + + ++ V++ ++ +IH + ++Q L+K
Sbjct: 214 HGIIVQAALPQHGQISEMFVMGSMDMN----VIEHSMDLLNEIHKDICPLLEQCLVKT 267
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 7/224 (3%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 31 LAEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 89
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +N S F+T R +G D K E S L +A+ A+M P++ +D+F
Sbjct: 90 YSDTGRLNCNVSYTTFAT---PIRGQGTDNK--EYSAMLHKALEGAVMLHTFPKTTVDVF 144
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE +
Sbjct: 145 ALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGS 204
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
L VA +P ++ + L+ + + ++ + C+ + IL
Sbjct: 205 LMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDIL 248
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHG 66
G R GR+ +E RK +LGV S + GS Y+E GNTKV+ +V+ PR P +NK + G
Sbjct: 39 SGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNK-FRALG 97
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ +F++S F+ RK P+ D + ++ + +A+ + + P QIDIF VL
Sbjct: 98 ELYCDFKFSP--FACIHRKN-PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVL 154
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
+ DG A + AA LAL DA I M + V A + ++ D +D + EE L
Sbjct: 155 EDDGSVLAAVITAAGLALSDATISMFDIVTASTVAVIEDKIYLDPTLAEERL 206
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGS 67
G R DGR E RKI + GV SQ+ GSAYIE TKV+ +V+ PR + NK+ G
Sbjct: 39 NGTRADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGE 98
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ F++ A FS +R+ + D + + S ++QA+ +A+ P Q+DI+ VL
Sbjct: 99 IYCEFKF--APFSCHKRRLH-QQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLH 155
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
DG A + AA +AL AGIPM + + + + ++ G+ LVD + EE L
Sbjct: 156 NDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEERL 206
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 32 LAEDADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 90
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +N S F+TG R +G + E S L +A+ A+M P++ +D+F
Sbjct: 91 YSDTGRLNCSVSYTTFATG---IRGQG-LENKEYSGMLHKALEGAVMLHTFPKTTVDVFA 146
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE L
Sbjct: 147 LVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGL 206
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
V+ +P ++ + L+ + + ++ + C+ + IL +K
Sbjct: 207 MVSYMPARKEITQLTLTGEWTDGKITNAVELCMDACSKLCEILRERLKD 255
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR H+ R R G + + GSAY E GNTKV+ +V+GPR + K++ +N
Sbjct: 32 RPDGRSFHQCRPAFFRTGAVNAASGSAYAEVGNTKVIVSVFGPRESK-KAMMYSDIGRLN 90
Query: 72 FQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
S F+T R +G D K E S L +A+ AI+ E P++ +D+F VL++ G
Sbjct: 91 CNVSFTTFAT---PIRGQGSDHK--EYSSMLHKALEGAIILETFPKTTVDVFALVLESSG 145
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
+ ++ A+LAL DAGI M + V + S S ++D EE +L + +P
Sbjct: 146 SDLPVVISCASLALADAGIMMYDLVASVSVSCFNKNLVIDPVLEEENGQDGSLMITCMPS 205
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + + + L CA + I+ + +K+
Sbjct: 206 RYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKE 247
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 123/253 (48%), Gaps = 37/253 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
+ R + R+I + GV SQ+ GSAYIE NTKV+ +V+GPR + ++ S +
Sbjct: 51 KRTNRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRA--SPKTELFESAKFS 108
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ A F+ + K ++S+ LRQ++ AI E +P++ ID++V VL DGG
Sbjct: 109 CELKFASFARPGERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDGG 168
Query: 132 NFCACVNAATLALIDAGIPMREYVVACS-------------------------ASLAGDT 166
A + AA++AL DAG+ M + V ACS A +
Sbjct: 169 VLVAAITAASMALADAGVEMYDMVSACSSICIRNQSISNGSNGSGSGNGSSGAAPKVQSS 228
Query: 167 PLVDISHLEE----TLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
L+D + EE +LG + VA +P ++ + + +L ++ +D + GC I
Sbjct: 229 ILLDPTLQEEESKDSLGC--VVVAKMPSLNEITQIIQTGELSYNNTIDGIDLCIDGCDKI 286
Query: 223 HAILDTAIKQHLI 235
++I+ KQ+LI
Sbjct: 287 YSIM----KQNLI 295
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 11/236 (4%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 31 LVEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAMM 89
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+N S F+T R +G D K E S L +A+ A+M P++ +D+F
Sbjct: 90 YSDIGRLNCNVSYTTFAT---PVRGQGADNK--EYSSMLYKALEGAVMLHTFPKTTVDVF 144
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE +
Sbjct: 145 ALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGS 204
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L VA +P ++ + L+ + + ++ + C+ + IL + HL A
Sbjct: 205 LVVAFMPARKEITQLTLTGEWSDGRITNAVELCMDACSKLGDIL----RDHLKDTA 256
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 128/238 (53%), Gaps = 15/238 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLI 70
R+D R +E+RKI + G+ SQ+ GSAYIE GNTKV+ +V+ PR V NK+ G +
Sbjct: 37 RSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNGYCAQGEIYC 96
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F++ A FS +RK + + + + SL L++A+ A+ P Q+D++V VL G
Sbjct: 97 EFKF--APFSCQKRKIH-QQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAG 153
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG--PN------ 182
+ A + AA+ AL +AG+PM V A + + + L+D + +EE + P+
Sbjct: 154 SSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDIEEAICNTQPDNQGDFN 213
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+T+A+LP +++ + L ++ + + + + DI +L + + ++K+
Sbjct: 214 HGTITLASLPQHNQISEVFLIGSINTNSVVQATEILTTANKDICPVLQQCLVKTIMKL 271
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 9/223 (4%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-LI 70
R DGR H+ R + G S + GSAY E GNTKV+ +V+GPR +K V V +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPR--ESKKAMVFSDVGRL 91
Query: 71 NFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
N S F++ T +G D K E S L +A+ I+ E P++ +D+F VL++
Sbjct: 92 NCNVSYTTFAS---PTLGQGTDHK--EYSSMLHKALEGVIIMETFPKTTVDVFALVLESG 146
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + + A S S G + ++D EE + + +P
Sbjct: 147 GSDLSVVISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMP 206
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + ++ + L C+ + I+ +KQ
Sbjct: 207 SRYEITQLTVTGEWTTPNINEAMQLCLDACSKLGEIMRDLLKQ 249
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 32 LAEDADWPRADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 90
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +N S F+TG R +G + E S L +A+ A+M P++ +D+F
Sbjct: 91 YSDTGRLNCSVSYTTFATG---IRGQG-LENKEYSGMLHKALEGAVMLHTFPKTTVDVFA 146
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
VL++ G + ++ A+LAL DAGI M + V + S S G ++D + EE L
Sbjct: 147 LVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCLGKNVIIDPTSDEEAWQDGGL 206
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
V+ +P ++ + L+ + + ++ + C+ + IL +K
Sbjct: 207 MVSYMPARKEITQLTLTGEWTDGKITNAVELYMDACSKLCEILRERLKD 255
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 13/211 (6%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVRNKSIKVHGSVLINFQYSMAVFSTGER 84
+ G Q++GS+Y+E +TK++ AVYGPR P R++ G++ + + A FS ER
Sbjct: 4 KAGTIHQANGSSYVETCDTKLICAVYGPRDNPKRHQ-FSSKGNIFC--EVTFAPFSWHER 60
Query: 85 KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLAL 144
+ D + E S + QA +A+ E +P++QIDI++ +L+ G AA++AL
Sbjct: 61 VSNQ--DSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIAL 118
Query: 145 IDAGIPMREYVVACSASLAGDTPL----VDISHLEETLGGPNLTVAALPLSGKVAVMELS 200
DAGI M + V +C ++ + +T + VD S E +L + +A +P K++ + +
Sbjct: 119 ADAGIEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRVVIAYMPSLNKISYLSMQ 178
Query: 201 QKLHL-DHLPRVLDCALKGCADIHAILDTAI 230
+ + D + V+ C ++GC I+ + I
Sbjct: 179 GEETIDDSMQNVITC-IEGCLRIYKYMKECI 208
>gi|302691292|ref|XP_003035325.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
gi|300109021|gb|EFJ00423.1| hypothetical protein SCHCODRAFT_50397 [Schizophyllum commune H4-8]
Length = 259
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQY 74
GR ++R I R G+ SQ++GSAYIE K+ AVYGPR +NK++ +N +
Sbjct: 36 GRGELDIRPIFLRPGLISQANGSAYIEADKIKIACAVYGPR--QNKNVAYSEQGRLNVEV 93
Query: 75 SMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN-- 132
A ++T RK P D + I + + QA+ A++ E+ P+S +DIF+ +++ADG
Sbjct: 94 KYAPYATARRKA-PLRDAEDRSIGVAIHQALLASVRLELLPKSTVDIFLVIIEADGKEAS 152
Query: 133 FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
+ AA+ AL DAGI M V +CSA++ GD +D S E + ++ +P
Sbjct: 153 IASGAVAASAALADAGIEMLGLVSSCSAAVTGDKIWLDPSAAESEQADGTVILSCMPALD 212
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
V + S +L + + C DIH+++ A+ +H
Sbjct: 213 SVTSVWQSGRLPPQKALECMHACQQKCVDIHSVVAQALLEH 253
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 5/228 (2%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR H+ R R G + + GSAY E GNTKV+ +V+GPR + K++ +
Sbjct: 34 VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRL 92
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
N S FST R +G + + S L +++ AI+ E P++ +D+F VL++ G
Sbjct: 93 NCSVSYTTFST---PVRGQGS-ENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 148
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
+ ++ A+LAL DAGI + + V + S S G L+D EE +L + +P
Sbjct: 149 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPS 208
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+V + ++ + + + L + I+ + +K+ + ++
Sbjct: 209 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTIS 256
>gi|388583110|gb|EIM23413.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 254
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 6/214 (2%)
Query: 16 RRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYS 75
R+ ELR + + G+ S + GS YIE GNTK+ AVYGP+ ++N G +N +
Sbjct: 34 RKNDELRPVFIKPGLISSASGSTYIECGNTKIACAVYGPKQIKNAPYSSTGK--LNVEIK 91
Query: 76 MAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCA 135
A FS+ R+ P + + + +S Q+ QA+ ++ E + + QID+FV ++Q D +F
Sbjct: 92 HAPFSSSIRR-DPVKELEATHLSSQVTQALLPSLRLENYEKMQIDLFVTIIQDDSLDFGL 150
Query: 136 CVN---AATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
N AA AL +G+ M VV + + D L+D S E +TV LP
Sbjct: 151 LANITTAAGTALASSGLEMNGLVVGATVAFKEDEMLLDPSPSEVKYAKAVMTVCTLPALT 210
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
++A + + L ++ + L +IH ++
Sbjct: 211 QIAHIWQAGTLDINQYKQALQITESASRNIHTLI 244
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
+R DGR H+ R R G + + GSAY E GNTKV+ +V+GPR +K ++ +
Sbjct: 32 VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPR--ESKKAMMYSDIGR 89
Query: 70 INFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N S F+T R +G D K E L +A+ AI+ E P++ +D+F VL++
Sbjct: 90 LNCNVSFTTFAT---PIRGQGSDHK--EYCAMLHKALEGAIILETFPKTTVDVFALVLES 144
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP-NLTVAA 187
G + ++ A+LAL DAGI M + V + S S ++D LEE +G +L +
Sbjct: 145 SGSDLPVVISCASLALADAGIMMYDIVASVSVSCFNKNLVID-PILEEEIGQDGSLMITC 203
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+P ++ + ++ + + + L CA + I+ + +K+
Sbjct: 204 MPSRYEITQLTVTGEWSTTKINEGMQLCLDACAKLAKIMRSCLKE 248
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 18/230 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIE-QGNTKVLAAVYGPRPV--RNKSIKVHG 66
G R D R + R + ++GV Q+ GSAY+E Q TKV+ +VYGPR + RN+ +
Sbjct: 63 GKRQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGA 122
Query: 67 SVLINFQYSMAVF--------STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
I +Y +A F ST + R E S+ LR+A+ +I + +P+S
Sbjct: 123 ---IQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSV 179
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
ID++ +LQ DG A ++ A+LAL +AGI M + V AC+ S +VD ++LE
Sbjct: 180 IDVYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKY 239
Query: 179 GGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAIL 226
+ A +S V +LSQ + + +D + GC+ ++ ++
Sbjct: 240 ASGGMVCAY--MSNLNQVTQLSQVGDMSYQKIGEAMDLCIDGCSKLNQLM 287
>gi|164661143|ref|XP_001731694.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
gi|159105595|gb|EDP44480.1| hypothetical protein MGL_0962 [Malassezia globosa CBS 7966]
Length = 182
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 90 GDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGI 149
DR+ E + +R + I + ++PRSQ+DI + V Q DGG A +NA TLAL+DAGI
Sbjct: 26 SDRQLVEWANAVRSTLEPVIHTHLYPRSQVDIVLYVEQQDGGVLPAMINACTLALMDAGI 85
Query: 150 PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLP 209
PM +YV A + L G T ++D++ L E P +TVA LP +G V +++L ++H+D
Sbjct: 86 PMSDYVTAMTCGLHGSTAMLDLN-LTEQSDLPFVTVAILPRTGTVPLIQLDTRMHMDRFA 144
Query: 210 RVLDCALKGCADIHAILDTAIK 231
++ + + LD+A++
Sbjct: 145 AMVHVCVDAARVLRDELDSAVR 166
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 3/214 (1%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP---VRNKSIKV 64
G R DGR +E R I G ++ SDGSA I+QG T ++ V GP V+ +
Sbjct: 9 AAGYRLDGRLCNETRNITVSHGEYATSDGSASIKQGLTHIIVLVKGPSDSTYVKQANQTN 68
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
SVLIN +++ + + + + D T+EISL +++ + I+ + RSQI VE
Sbjct: 69 FASVLINCDINISNNLSTDIRRGTKLDIITAEISLLIKKVFKSIIIVPLSKRSQITFSVE 128
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
+L DG +N TLALIDAG+ ++ V + S L D + LE LT
Sbjct: 129 ILDCDGCLKSTIINCCTLALIDAGVAVKSLVFSSSVCYLDKIVLADPTQLETNYSTAELT 188
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKG 218
+A ++ ++L+ K+ + ++ LK
Sbjct: 189 IATESITNNPIYIDLASKVSEEGFKKMYSSCLKS 222
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 7/224 (3%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR + K++
Sbjct: 33 LAEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESK-KAML 91
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +N S F+T R +G D K E S L +A+ A+M P++ +D+F
Sbjct: 92 YSDTGRLNCNVSYTTFAT---PIRGQGMDNK--EYSAMLHKALEGAVMLHTFPKTTVDVF 146
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
VL++ G + ++ A+LAL DAGI + + V + S S G ++D + EE +
Sbjct: 147 ALVLESGGSDLPIIISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEEAWQDGS 206
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
+ VA +P ++ + L+ + + ++ + C+ + IL
Sbjct: 207 IMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDIL 250
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 9/223 (4%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-LI 70
R DGR H+ R + G S + GSAY E GNTKV+ +V+GPR +K V+ V +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPR--ESKKAMVYSDVGRL 91
Query: 71 NFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
N S F++ T +G D K E S L +A+ IM E P++ +D+F VL++
Sbjct: 92 NCNVSYTNFAS---PTLGQGTDHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESG 146
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G + ++ A+LAL DAGI M + + A S S G + ++D EE + + +P
Sbjct: 147 GSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMP 206
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ + ++ + ++ + L + + I+ +KQ
Sbjct: 207 SRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249
>gi|392595837|gb|EIW85160.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 259
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 13/224 (5%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS---IKVH 65
G R D R ++R I + G SQ++GSAY+E TK+ A+YGPR +NK+ H
Sbjct: 33 GQPRQD-RAASDIRPIFLQTGFISQANGSAYVETAKTKLACAIYGPR--QNKASAAYSEH 89
Query: 66 GSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
G +N + A FS RK P D + I+ + QA+++++ E+ P+S ID+F+ +
Sbjct: 90 GR--LNVEVKFAPFSYPRRKA-PLRDAEDRTIAETIHQALASSVRLELLPKSTIDVFITI 146
Query: 126 LQADGGNFCACVNAATLAL--IDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNL 183
L++DG C + + DAGI + V ACSA++ G+ +D + E ++
Sbjct: 147 LESDGIEGCTATASTAASAALADAGIEILGLVTACSAAIIGEEIWLDPTEAESKQATGSV 206
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLD-CALKGCADIHAIL 226
++A LP +V + S ++ + R ++ C L+ C DIH I+
Sbjct: 207 SLAYLPALDRVTTVFQSGQMDVSMAIRCMEQCQLR-CKDIHTIV 249
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 9/224 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
+R DGR H+ R R G + + GSAY E GNTKV+ +V+GPR +K ++ V
Sbjct: 31 VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPR--ESKKAMLYSDVGR 88
Query: 70 INFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N S F+T R +G D K + S L +A+ AI+ E P++ +D+F VL++
Sbjct: 89 LNCNVSYTTFAT---PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALVLES 143
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
G + ++ A+LAL DAGI M + V + S S ++D EE ++ + +
Sbjct: 144 GGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQDGSIMITCM 203
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
P ++ + ++ + + + L CA + ++ + +K+
Sbjct: 204 PSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKVMRSCLKE 247
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK 63
L E R DGR H+ R + G + + GSAY E G TKV+ +V+GPR +K
Sbjct: 31 LAEDADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPR--ESKKAM 88
Query: 64 VHGSV-LINFQYSMAVFSTGERKTRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
++ V +N S F+T R +G D K E S L +A+ A+M P++ +D+
Sbjct: 89 MYSDVGRLNCNVSYTTFAT---PVRGQGADNK--EYSSMLHKALEGAVMLHTFPKTTVDV 143
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGP 181
F VL++ G + ++ A+LAL DAGI M + V + S S ++D + EE
Sbjct: 144 FALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDG 203
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+L VA +P ++ + L+ + + ++ + C+ + IL +K
Sbjct: 204 SLVVAFMPARKEITQLTLTGEWSDGRITNAVELCMDACSKLGDILRDRLKD 254
>gi|260785852|ref|XP_002587974.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
gi|229273129|gb|EEN43985.1| hypothetical protein BRAFLDRAFT_124886 [Branchiostoma floridae]
Length = 1444
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 13/223 (5%)
Query: 14 DGRRGHELRKIRCRL--GVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSVLI 70
DG G R L GV SQ+ GSAYIE G TKV+AAVYGPR + R + + G +
Sbjct: 1194 DGSPGRRTAGPRTDLHAGVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCC 1253
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ A F+ R+ + D + + +L + QA+ A+ + P+SQ+D+++ VLQ DG
Sbjct: 1254 ELKF--ATFACRRRRQHIQ-DNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDG 1310
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE-TLGGPN------L 183
A + A L DAG+ M + V CS G+ L+D S EE + G + +
Sbjct: 1311 SALAAAITCAAAGLADAGVMMYDIVAGCSVRQCGERQLLDPSVGEELSQEGESAEDHGMV 1370
Query: 184 TVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
TV LP +V+ + L L + + + GC I+ IL
Sbjct: 1371 TVGLLPSLNQVSALTLDGHLQQQTAVQAVKTCIGGCQGIYPIL 1413
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 8/217 (3%)
Query: 11 LRNDGRRGH--ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH--G 66
LR D R ++R ++GV + GSAY+E TKV+ AVYGPR K H G
Sbjct: 21 LRADQTRSSMDQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGG 80
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ + ++ A F+ R D ++S + +A+ AI + P+ + FV +L
Sbjct: 81 QLICDVKF--APFAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVIL 138
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
Q+DG + A+LAL DA I MR+ V AC+A + D LVD+ EE + N +A
Sbjct: 139 QSDGSELATAIMCASLALADAAIEMRDLVTACNAGIVDDKLLVDLCTSEERMSQGNTMLA 198
Query: 187 ALP-LSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
LP L VM+ H + ++D C+ +
Sbjct: 199 FLPSLQKSTFVMQQGTMTHA-QVEEMIDVCSIACSSV 234
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 3/171 (1%)
Query: 12 RNDGRRGHE--LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DG R + +R + C +GV +Q GSAYIE+G TKV+A+V+GPR V K + +
Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99
Query: 70 INFQYSMAVFSTGERKTRPRGD-RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y FS+ + + ISL L Q + + ++P+S+IDIF+ VL+
Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLEN 159
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DG + A LAL DA I + + V+ S ++ L+D EE +G
Sbjct: 160 DGSAIPTAITAGALALSDASINLFDLVIGASVKMSLGKALIDPCKAEEEVG 210
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSV 68
+RND R E+RKI + G+ SQ+ GSAYIE GNTKV+ +V+ PR + N++ G +
Sbjct: 35 NIRNDKRANSEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCTQGEI 94
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
F++ A FS +RK + D + + SL L++A+ A+ P Q+D++ VL
Sbjct: 95 YCEFKF--APFSCQKRKIH-QQDAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDN 151
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
G + A + AA+ AL +AG+PM V A + + + L+D + EE +
Sbjct: 152 AGSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNYYLMDPTDTEEVI 201
>gi|258576013|ref|XP_002542188.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902454|gb|EEP76855.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 270
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 126/261 (48%), Gaps = 53/261 (20%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSVL 69
LR DGRR +ELR I ++ S GS+Y+ GNT V+ V+GP R+++ G +
Sbjct: 14 LRLDGRRWNELRLIDAQISTNPASSGSSYLATGNTVVVCNVHGPAEGKRSETTGGSGGAV 73
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
++ ++A F+ +R RK S ++ S S+ S I I V VL +D
Sbjct: 74 VSVVVNIAGFAGIDR-------RKKSMMA-------SGGGGSD----STISIHVSVLSSD 115
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDT----------------------P 167
G F ACVNA TLAL+DAGIPM + AC+ ++G P
Sbjct: 116 GSIFAACVNACTLALVDAGIPMPGLLCACTVGMSGRASTPAAELAQSSSRVGGINESLDP 175
Query: 168 LVDISHLEETLGGPNLTVAAL-PLSG----------KVAVMELSQKLHLDHLPRVLDCAL 216
L+D+SH EE + P++TVA P+ G ++++ + +H+ +L + +
Sbjct: 176 LLDMSHPEE-MELPHMTVANTNPVGGGSEADAEEAQMLSIVRMESGVHISYLETMFAVGI 234
Query: 217 KGCADIHAILDTAIKQHLIKV 237
GC + IL+ +K+ KV
Sbjct: 235 DGCKQMRQILNGVLKRAGKKV 255
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 11/167 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVL 69
+R DGR +E+R ++GV S++DGSAY GNT +AAVY +P R +S +KV
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVY-LKPGREQSNLKV----- 54
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
Y M F+ ERK R+ E+S + +A+ AI+ E P I+ VE+++AD
Sbjct: 55 ---SYRMLPFAGEERKGLGL-TRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKAD 110
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE 176
G A +NA +LAL AGIPM+ V A + G+ ++D++ EE
Sbjct: 111 AGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEE 157
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 20/240 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVH-GSVL 69
R DGR + R + + GV +Q+ GSAY E TKV+ +VYGP+ + + +++ G +
Sbjct: 35 RADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLK 94
Query: 70 INFQYSMAVFSTGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y A +S+ + G D + S+I L +A+S+ + + +P+SQID++V VL+
Sbjct: 95 CELKY--APYSSPKHGDHIPGASDVEKSDI---LLEAISSGVCLQRYPKSQIDVYVIVLE 149
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAG-DTPLVDISHLEE---------- 176
DG A + AA++AL+DAGI M + + A S +AG DT ++D + EE
Sbjct: 150 DDGSVMPAAITAASVALVDAGIEMYDVITASSIRIAGQDTFIIDPTSSEEFSPLNLEKSN 209
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
L + VA LP +V+ + S L + L + ++H+I+ + L K
Sbjct: 210 DLNQGMVMVALLPSINQVSSVVSSGHLECNVLQEAIRSCRYSAQNLHSIVRKCLVNSLKK 269
>gi|312370650|gb|EFR18995.1| hypothetical protein AND_23239 [Anopheles darlingi]
Length = 261
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLINFQYSMAVFSTGERK 85
++GV S + GSAYIE GNTK + +V+ PR + +S G + +F++S F++ RK
Sbjct: 11 KVGVVSTAKGSAYIELGNTKAIVSVFDPREIPKQSKYCALGELYCDFKFSP--FASHLRK 68
Query: 86 TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALI 145
T P+ D + ++ L A++ A+ + P Q+D+F VL+ DG A + AA LAL
Sbjct: 69 T-PQSDTRGRSLAAALASALNPAVCRHLFPNLQLDVFANVLEDDGSVLAAVITAAGLALA 127
Query: 146 DAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
DA IPM + V A +A + GD LVD + EE L
Sbjct: 128 DACIPMFDIVTATTAGILGDRILVDPTAEEERL 160
>gi|66356472|ref|XP_625414.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
gi|46226443|gb|EAK87443.1| archeo-eukaryotic exosomal RNAse [Cryptosporidium parvum Iowa II]
Length = 351
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQ---SDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVH 65
G+R DGR+ E+R+I+C + +Q DG+ Y EQG K++ ++ GP P+ N + +
Sbjct: 97 GIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGNINYTNN 156
Query: 66 GS-VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
S V IN + ++ FS+ +R+ R + DR E L + + S+ I + + +SQI I +
Sbjct: 157 NSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVICDQ-YSKSQIIINII 215
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLE-ETLGG 180
+L+ DG A +NA ++AL +GI M++ +V+ + L G L D++ E E+L G
Sbjct: 216 ILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQVLYDLTQSEMESLKG 272
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 29 GVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIK-VHGSVLINFQYSMAVFSTGERKT 86
G S ++GSAY+E T+V+AAVYGPR R ++ + ++ + A F++
Sbjct: 4 GTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPRDDA 63
Query: 87 RPRGDRKTSEISL--QLRQAVSAAIMSEV----HPRSQIDIFVEVLQADGGNFCACVNAA 140
R D TS + Q +V+ A+ S V + +S ID+FV ++ DGG A +N
Sbjct: 64 RIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAINCC 123
Query: 141 TLALIDAGIPMREYVVACSASLAGDTPLV--DISHLEETLGGPNLTVAALPLSGKVAVM- 197
TLAL DAGI M + V A S +LA +T +V D +HLEE+ + AL +S + +
Sbjct: 124 TLALADAGIEMNDMVTAASVALAANTNIVLWDPTHLEESRASA-IATQALRVSDNLVTLL 182
Query: 198 ----ELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
E S KL + AL+ C+ + L ++Q L+
Sbjct: 183 DQSGESSLKLSVK--------ALEACSSMSVQLHGLMQQTLVS 217
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR + C + + GSA QG+TKVLAAVYGP+ K N
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A F + + + E + L++ + + + V+P + + ++V+ DG
Sbjct: 55 ENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGS 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPNL 183
+NAA AL+DAGIPM+ VA LA + LV D + LEE L PN
Sbjct: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNT 174
Query: 184 TVAALPLSGKVA 195
T++ LP VA
Sbjct: 175 TLSVLPEGSSVA 186
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
T G R D R +LR + C +G+ S++DGSA G + VL +VYGP R + K+
Sbjct: 11 TALMGHSRPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKL 70
Query: 65 -HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
H + + F + T ER +RQ V A ++S +HPR+ I I +
Sbjct: 71 DHAHIQVVFSPVSGISGTQERTYEHF-----------IRQVVEAIVLSALHPRTTIQITL 119
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA 160
+VL DG +NAA LALIDAGIP+ + CSA
Sbjct: 120 QVLFDDGSILSTAINAAVLALIDAGIPLSK---TCSA 153
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR + C + + GSA QG+TKVLAAVYGP+ K N
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A F + + + E + +++ + + + V+P + + ++V+ DG
Sbjct: 55 ENAEKACFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGS 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPNL 183
+NAA AL+DAGIPM+ VA LA + LV D + LEE L PN
Sbjct: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCLADNGYLVLDPNKLEEKKMTAFAYLVFPNT 174
Query: 184 TVAALPLSGKVA 195
T++ LP VA
Sbjct: 175 TLSVLPEGSSVA 186
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 7/217 (3%)
Query: 16 RRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYS 75
R ++R + R G+ SQ+ GSAY+E G TK+L VYGPR K +
Sbjct: 40 REQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTADVR 99
Query: 76 MAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCA 135
A FS ER + +G + + S L +++ A+ +PRSQI++ + VL+ G
Sbjct: 100 FAPFSCPERGSWIQGS-QDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVLAH 158
Query: 136 CVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET------LGGPNLTVAALP 189
V A++AL DAGI M + V+ CS G + + D ++ EE+ LTVA LP
Sbjct: 159 AVTCASVALADAGIQMYDLVLGCSLRQDGASFVADPTYAEESGRAGPGGPRGGLTVAFLP 218
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
+++ + ++ D L + ++GC ++ ++
Sbjct: 219 SLNQISGLRSDGEMAEDTLRAGVRTCIEGCYKLYPVV 255
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSV 68
+RND R +E+RKI + G+ SQ+ GSAYIE GNTKV+ +V+ PR + N++ G +
Sbjct: 35 NIRNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEI 94
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
F++ A FS +RK + D + + SL L++A+ A P Q+D++ VL
Sbjct: 95 YCEFKF--APFSCQKRKIH-QQDAEEKQYSLILQRALEPA---HEFPNFQVDVYAMVLDN 148
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
G + A + AA+ AL +AG+PM V A + + + L+D + EE +
Sbjct: 149 AGSSLAAAIMAASTALANAGVPMFGLVTASTIGIYDNHYLMDPTDTEEVI 198
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R D R +++R I L + +++DGSA N+ VLAA+YGP V + K+ + +
Sbjct: 2 VRIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKISKATV- 60
Query: 71 NFQYSMAVFSTGERKTRPRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
VF T G++ +T E +R A+ + IM+ +HPR+ I I ++V
Sbjct: 61 -----EVVF------TPDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYST 109
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN----LT 184
DG +NAA LAL+DAGI + + + S S D + +L+ T+ N
Sbjct: 110 DGSIVSCSINAACLALLDAGIELNSLIASISLSFNSDGQI----YLDPTMKEENESKATA 165
Query: 185 VAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
+ A K+ +++ S + L A C I A + TA+K ++
Sbjct: 166 IYAFNSQLKLMMIKSSGIITEQQNQEALQLARSSCERILAYIRTAVKTRIM 216
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 14/188 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSVLI 70
R DGRR ELR G+ S + GS Y+EQG+TKV+AAV+GPR V R K + +
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREVTRRKEFSLKAQLRC 93
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
F + G ++ +++ S L +++ + +P++ IDI V L+ DG
Sbjct: 94 VFTFEPFATPGGRQENISLLEQRYSS---WLEESLKPVVQLRRYPKASIDIRVTCLENDG 150
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE--------TLGGPN 182
G A + A +AL +GI + V+ + GD L+D SH EE T G N
Sbjct: 151 GVLAAALTACGIALATSGIETFDLVIGVNLRAHGDRVLMDPSHAEEDAAPSREGTYG--N 208
Query: 183 LTVAALPL 190
+T+ +P+
Sbjct: 209 VTLGFMPV 216
>gi|302404108|ref|XP_002999892.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
gi|261361394|gb|EEY23822.1| exosome complex exonuclease RRP41 [Verticillium albo-atrum
VaMs.102]
Length = 155
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHG-SV 68
LR DGRR +ELR+++ ++ +DGS+Y+E G+TKV+ V GP P R
Sbjct: 13 LRVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N +A FS+ +R+ R D++ SE+ + +A ++ + + + P S I I + VL
Sbjct: 73 AVNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQ 132
Query: 129 DGGNFCACVNAATLALIDAG 148
DG A +NA TLAL+DAG
Sbjct: 133 DGSLLAALLNATTLALVDAG 152
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 98/178 (55%), Gaps = 26/178 (14%)
Query: 11 LRNDGRR-GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS-V 68
LR D R+ ++LR ++ LGV ++DGS QGNT V+ +V GP S+K G
Sbjct: 6 LRRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPE----SSMKEKGDQA 61
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSE----ISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+I+ + +PR D+K SE L +RQ + I++ ++PR+ I I ++
Sbjct: 62 IIDVMF------------QPR-DKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQ 108
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGDTPLVDISHLEETLGG 180
V+Q DG A +NAA+LAL+DAG+ M+ +V+ S S +GD L+D + +E+
Sbjct: 109 VVQYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDC-LLDPTRIEQDFSS 165
>gi|170067614|ref|XP_001868552.1| exosome component 6 [Culex quinquefasciatus]
gi|167863716|gb|EDS27099.1| exosome component 6 [Culex quinquefasciatus]
Length = 246
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSVLINFQYSMAVFSTGERK 85
+LGV S + GSAY+E GNTKV+ +V+ PR + + + + G + + ++S F+ RK
Sbjct: 2 KLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGELYCDLKFSP--FACVHRK 59
Query: 86 TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALI 145
P+ D + ++ + +A+ + + P QIDIF VL+ DG A + AA LAL
Sbjct: 60 -NPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLGAVITAAGLALS 118
Query: 146 DAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
DA I M + V A + ++ GD +D + EE L
Sbjct: 119 DATISMFDIVTATTVAVYGDRIYLDPTLAEERL 151
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 9 GGLRNDGRRGHELRKIRCRL-------------------GVFSQSDGSAYIEQGNTKVLA 49
G R DGR E RKI C L GV SQ+ GSAYIE TKV+
Sbjct: 39 NGTRADGRTSTEHRKI-CNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQTKVIV 97
Query: 50 AVYGPRPVRNKS-IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA 108
+V+ PR + NK+ G + F++ A FS +R+ + D + + S ++QA+ +A
Sbjct: 98 SVFDPREIPNKTDYSSKGEIYCEFKF--APFSCHKRRLH-QQDAEEQQFSAIMKQALESA 154
Query: 109 IMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL 168
+ P Q+DI+ VL DG A + AA +AL AGIPM + + + + ++ G+ L
Sbjct: 155 VFRHEFPNFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLL 214
Query: 169 VDISHLEETL 178
VD + EE L
Sbjct: 215 VDPTLEEERL 224
>gi|383414445|gb|AFH30436.1| exosome complex component MTR3 [Macaca mulatta]
Length = 272
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA G P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + ++ + L+GC ++ +L ++
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLIESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 36 GSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFST-GERKT-RPRGDRK 93
GSA + G TKVL + GP +S ++ + A F+ G+R+ P DR+
Sbjct: 109 GSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRRNVNPTTDRR 168
Query: 94 TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMRE 153
E S L++A+SA+I+ + PRS+I + V VL DGG A +NAATLAL+DAGIP+R+
Sbjct: 169 LVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLALMDAGIPLRD 228
Query: 154 YVVACSA 160
V ACSA
Sbjct: 229 MVCACSA 235
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR +LR + C V ++ GSA QG+TKVLAAVYGP+ K N
Sbjct: 5 RDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A + + + E + L++ + + + ++P + I V+V+ DG
Sbjct: 55 ENPEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGA 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHLEET-------LGGPNL 183
+NAA AL+DAGIPM+ VA LA G ++D + LEE L PN
Sbjct: 115 LLVCAINAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNS 174
Query: 184 TVAALP 189
V+ LP
Sbjct: 175 VVSVLP 180
>gi|402912105|ref|XP_003918628.1| PREDICTED: exosome complex component MTR3 [Papio anubis]
Length = 272
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGSGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA---GDTPLVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA T L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPRPAPTWLLDPTRLEEEHAAAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + ++ + L+GC ++ +L ++
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLIESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 18/229 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV----RNKSIKVHGS 67
RNDGR + +R + G +++DGSA Q +KVLAAVYGP V + K +K +
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVE 66
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V + + E++ L ++ AV + I++ ++PR+QI + ++V
Sbjct: 67 VTFTPAFGNTNYIDKEKE-------------LLIKNAVESMILTTLYPRTQISVILQVFS 113
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL-VDISHLEETLGGPNLTVA 186
DG +NAA LAL+DAGI M + + + D + VD S EE +
Sbjct: 114 DDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEENQSKAIAIYS 173
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
++ + + + L D + LD A + C I + + A+K ++
Sbjct: 174 FSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRIM 222
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-L 69
+R DGR E R R G + + GSAY E GNTKV+ +V+GPR +K ++ V
Sbjct: 33 VRPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPR--ESKKAMMYSDVGR 90
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N S FST R +G E S L +++ AIM E P++ +D+F VL++
Sbjct: 91 LNCNVSYTTFST---PVRGQGS-DCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLESG 146
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACS 159
G + V+ A+LAL DAGI M + V S
Sbjct: 147 GSDLSVIVSCASLALADAGIMMYDLVAGVS 176
>gi|55644221|ref|XP_523406.1| PREDICTED: exosome complex component MTR3 [Pan troglodytes]
gi|410209962|gb|JAA02200.1| exosome component 6 [Pan troglodytes]
gi|410209964|gb|JAA02201.1| exosome component 6 [Pan troglodytes]
gi|410268124|gb|JAA22028.1| exosome component 6 [Pan troglodytes]
gi|410289018|gb|JAA23109.1| exosome component 6 [Pan troglodytes]
Length = 272
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-------------KSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA G P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA + S + L + + L+GC ++ +L ++
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 3 LLTEYGGGLRNDGRRGH---ELRKIRCRLGVFSQSDGSAYIEQGN--TKVLAAVYGPRP- 56
+L+E GG + GRRG E R + R G+ SQ+ GSAY+E G+ TKVL AV+GPR
Sbjct: 21 VLSEEGG--KAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRER 78
Query: 57 -VRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
+ + + G +L + +++ + P G + LQL++++ A+ + +P
Sbjct: 79 GMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGP-SPRQAGLQLQESLEPAVRLDRYP 137
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHL 174
R+++ ++V VL+ G A V+ A+LAL DAGI M + + C S G L+D
Sbjct: 138 RAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDD 197
Query: 175 EETLG-GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
EE G G ++++ LP +V+ + S + + + ++GC ++ +L
Sbjct: 198 EEEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVL 250
>gi|296231558|ref|XP_002761078.1| PREDICTED: exosome complex component MTR3 [Callithrix jacchus]
Length = 271
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P+G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPQGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA---GDTPLVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA T L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPASTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA + S + L + + L+GC ++ +L +
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP---RPVRNKSIKVHGSV 68
R DGR LR + C LG +DGSA + G+T+VLAAV+GP R ++++ K S+
Sbjct: 3 RADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKISI 62
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+I S +T ER E + +A++A +++E +PRS I I +++L A
Sbjct: 63 IIK---SGTTVNTLER-----------EWEAFITKALTACLVTEQYPRSVIQIVLQILSA 108
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACS 159
DG A +N A AL+DAGI M+ VA +
Sbjct: 109 DGSVLGAALNGAVAALMDAGIAMKVLPVAVT 139
>gi|392334379|ref|XP_003753157.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
gi|392355042|ref|XP_003751927.1| PREDICTED: exosome complex component MTR3 [Rattus norvegicus]
Length = 272
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P+G + E+ L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASL-AGDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SL G +P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSEAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 213 VALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCL 259
>gi|409046107|gb|EKM55587.1| hypothetical protein PHACADRAFT_161608 [Phanerochaete carnosa
HHB-10118-sp]
Length = 263
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 10/224 (4%)
Query: 10 GLRNDGRRGHELRKIR-----CRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
G+ +GR ++R I + G+ +Q++GSAYIE K+ AVYGPR R+ +
Sbjct: 32 GVPRNGRTAKDIRPISNGRAVLKPGLINQANGSAYIETEKAKIACAVYGPRQSRSTTYSE 91
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G +N + FS +R+ P D + +++Q+ QA+ +++ E+ P+S IDIF+
Sbjct: 92 KGR--LNVEVKFTPFSC-QRRRAPMRDAEDRSVAVQIHQALLSSVRLELLPKSTIDIFII 148
Query: 125 VLQADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
V++ DG C + AA+ AL DAGI M VV+CSA + +D + E
Sbjct: 149 VIENDGIEGCVASGSVAASAALADAGIDMLGLVVSCSACIISKEIWLDPTEEEAKQATGT 208
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
L A++P V + + K+ + + ++ + C DIH ++
Sbjct: 209 LVYASMPALDTVTNIWQTGKMTVQGAFQCMEACRERCTDIHLVV 252
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR ++LR + C V +++ GSA QG+TKVLAAVYGP+P K N
Sbjct: 5 RDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A + + + E + L++ + + ++P + + V+V+ DG
Sbjct: 55 ENPEKACIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDGA 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVA--CSASLAGDTPLVDISHLEE 176
+NAA AL+DAGIPM+ VA C S +G ++D + LEE
Sbjct: 115 LLTCAINAACAALVDAGIPMKHLAVAICCCLSESGYV-ILDPTKLEE 160
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + C V ++ GSA QG TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ + +R E + L++ + + + ++P + + V+V+ DG
Sbjct: 65 IWKPNTGHVGQADR-----------EYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVA-CSASLAGDTPLVDISHLEET-------LGGPN 182
+NAA AL+DAGIP+R VA C + ++ ++D S EE L PN
Sbjct: 114 ALLPCAINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPN 173
Query: 183 LTVAALP 189
TV+ +P
Sbjct: 174 TTVSVVP 180
>gi|17402904|ref|NP_478126.1| exosome complex component MTR3 [Homo sapiens]
gi|74736141|sp|Q5RKV6.1|EXOS6_HUMAN RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog; Short=hMtr3; AltName: Full=p11
gi|122920912|pdb|2NN6|F Chain F, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
gi|55930874|gb|AAH52252.1| Exosome component 6 [Homo sapiens]
gi|119572226|gb|EAW51841.1| exosome component 6 [Homo sapiens]
Length = 272
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---------- 55
E G R+ R LR + R G+ SQ+ GSAY+E G TKVL AV GPR
Sbjct: 25 EEAPGTRDPTR----LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGG 80
Query: 56 ---PVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSE 112
+ G +L +F+ A F+ G R+ P G + E++L L++A+ A+
Sbjct: 81 PAGAGGEAPAALRGRLLCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLG 137
Query: 113 VHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LV 169
+PR+Q+++ +L+ G A + AA LAL DAG+ M + VV C SLA G P L+
Sbjct: 138 RYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLL 197
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDT 228
D + LEE LTVA +P+ +VA + S + L + + L+GC ++ +L
Sbjct: 198 DPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257
Query: 229 AI 230
++
Sbjct: 258 SL 259
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 13/226 (5%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSVLI 70
R+D R +++R I + +++DGSA QG + VLAAVYGP V+ + K+ SV +
Sbjct: 85 RDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSV-V 143
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+ ++ A +T T +R+ + +R AV + I++ +HPR+QI++ V+V DG
Sbjct: 144 DVSFTPATGNT----TYFDKERE-----MLVRNAVESIILTLLHPRTQINVIVQVYSNDG 194
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL-VDISHLEETLGGPNLTVAALP 189
+NA LAL+DAGI + + + + S D + +D + EE L V A+
Sbjct: 195 SIISCAINACCLALLDAGIELNCLISSITLSFTHDNQIYLDPTQKEEN-NSKGLAVYAIN 253
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
++ + + + + + L+ A + C + A A++ ++
Sbjct: 254 SKSEIVMTKTTGIIGESLYFQGLNIAKQSCEKVSAYTRLAVRNRIM 299
>gi|221053137|ref|XP_002257943.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193807775|emb|CAQ38480.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 268
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R + R+ +E+R + +LG SD S + GNTK+LA +YGP+P + G
Sbjct: 28 GTFKRINNRKNNEIRDMFIKLGTDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGK 87
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V + + S R D I L + VS+ I+ + +P+ I+I ++Q
Sbjct: 88 VFLEIK------SLNMNDDRA-NDESDENIKNLLLECVSSVILLDQYPQCSINIKCLIIQ 140
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS--LAGDTP----LVDISHLEETLGGP 181
DGG A + +LALI+A I MR+ +V+ + + + +T LVD+ +LEE G
Sbjct: 141 NDGGCLSATLTCISLALINAQIKMRDIIVSVNVNSIICPNTKRVFHLVDVDNLEEKYYGE 200
Query: 182 NLTVAALPL 190
++ L
Sbjct: 201 KYDTNSITL 209
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGRR E+R + + + + GSA++ G TK+ AVYGPRP + + GS IN
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGS--IN 104
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
++ A F+T + +R T+ ++ L QA++A + +++ +S I + V VL+ DGG
Sbjct: 105 LEFRFAPFATTGKDA--CSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGG 162
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASL 162
A + LAL DAGI M + V SA +
Sbjct: 163 LISAALTCIGLALADAGIEMLDVVTGASACV 193
>gi|403305478|ref|XP_003943292.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP46,
partial [Saimiri boliviensis boliviensis]
Length = 238
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 58 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 117
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E AA++ +HPR+ I + ++V+ G C
Sbjct: 118 GLPGVAE-KSRERLIRNTCE----------AAVLGTLHPRTSITVVLQVVSDAGSLLACC 166
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 167 LNAACIALVDAGVPMRALFCGVTCALDSDGSLV 199
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 18/174 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR G+ELR G ++DGSA + G++ VLAAVYGP RN + ++
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLD 67
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ + E+ +++ +I +RQ + ++++ PR+ I I V+V++ +G
Sbjct: 68 VCFKL------EKGIMTSKEKEYEQI---IRQTFAPVVLTDSFPRAVISIVVQVIEDNGS 118
Query: 132 -NF-------CACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET 177
+F +NA +LAL+DAG+PM V A S G +PL D++ + E+
Sbjct: 119 ISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSRLFLG-SPLRDLAQVTES 171
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGRR E+R + + + + GSA++ G TK+ AVYGPRP + + GS IN
Sbjct: 47 RHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGS--IN 104
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
++ A F+T + +R T+ ++ L QA++A + +++ +S I + V VL+ DGG
Sbjct: 105 LEFRFAPFATTGKDA--CSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGG 162
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASL 162
A + LAL DAGI M + V SA +
Sbjct: 163 LISAALTCIGLALADAGIEMLDVVTGASACV 193
>gi|395859609|ref|XP_003802126.1| PREDICTED: exosome complex component RRP46 [Otolemur garnettii]
Length = 235
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFMQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLV 166
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKV 64
E G G G G LR C + S+ DGSA QG+T VLA VYGP V+ +K I
Sbjct: 56 EIGTGCSPRGP-GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFN 114
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++ + + + + E K+R R R T E A ++ +HPR+ I + ++
Sbjct: 115 KATLEVILRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQ 163
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
V+ G C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 164 VVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 208
>gi|302834702|ref|XP_002948913.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
gi|300265658|gb|EFJ49848.1| hypothetical protein VOLCADRAFT_89262 [Volvox carteri f.
nagariensis]
Length = 238
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 8/235 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E R + + V SQ+ GSAY+E G TKV+ V+GPR K + +
Sbjct: 11 GCRADGRGLEEFRTVFIKTRVLSQAKGSAYVEFGTTKVMVGVFGPRQSEVK-LGFTDTGR 69
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQ-LRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+N + + F++ K G + + Q L+QA+ ++ + P++ D+ +L+A
Sbjct: 70 LNCEVRLTSFAS--HKLAKSGQTQLESSAAQGLQQALEPSVQLDKFPKAVFDVSAMILEA 127
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
G + + AA++AL DAG+ + + V A S L+D S E + V +
Sbjct: 128 GGSDLAVLITAASVALADAGVELYDLVPAVQVSKQRGLLLLDPSLEESGAEEGGMLVGLM 187
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGL 243
P +V + + + L+ AL GC + A A+++ L+ A GL
Sbjct: 188 PELNEVTALNVRGLWADSEMQEGLELALGGCGQLKA----AMREALLTAAVEGGL 238
>gi|307109085|gb|EFN57324.1| hypothetical protein CHLNCDRAFT_21722, partial [Chlorella
variabilis]
Length = 223
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 108/216 (50%), Gaps = 12/216 (5%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKT 86
+ GV SQ+ GSAY E G+TKV+ VYGPR + + +N +A F++
Sbjct: 6 KTGVISQASGSAYAEFGHTKVMVGVYGPRQ-SERRVGYSEQGRVNCDVKLASFAS----- 59
Query: 87 RPRGDR-KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALI 145
R RG + E+S L+ A+ AA P++ +D+FV VL+A GG AA LAL
Sbjct: 60 RQRGQSAEERELSAALQTALEAAADLASFPKASVDVFVLVLEAGGGELGVAATAAALALA 119
Query: 146 DAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHL 205
DAG+ M + V ACS S + ++D + E L +A +P S +V M +
Sbjct: 120 DAGVEMFDLVAACSVSRVQGSLVLDPTADEVFREEGGLVLALMPTSSEVTQMVSRGRWSS 179
Query: 206 DHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241
L ++ A+ GCA LD A +Q L K A AR
Sbjct: 180 SQLREGMELAMGGCAQ----LDAAARQCL-KEAAAR 210
>gi|402905661|ref|XP_003915633.1| PREDICTED: exosome complex component RRP46 [Papio anubis]
Length = 260
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKV 64
E G G G G LR C + S+ DGSA QG+T VLA VYGP V+ +K I
Sbjct: 39 EIGTGCSPRGP-GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFN 97
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++ + + + + E K+R R R T E A ++ +HPR+ I + ++
Sbjct: 98 KATLEVILRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQ 146
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
V+ G C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 147 VVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 191
>gi|380814818|gb|AFE79283.1| exosome complex component RRP46 [Macaca mulatta]
gi|383414573|gb|AFH30500.1| exosome complex component RRP46 [Macaca mulatta]
Length = 235
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKV 64
E G G G G LR C + S+ DGSA QG+T VLA VYGP V+ +K I
Sbjct: 14 EIGTGCSPRGP-GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFN 72
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
++ + + + + E K+R R R T E A ++ +HPR+ I + ++
Sbjct: 73 KATLEVILRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQ 121
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
V+ G C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 122 VVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 166
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQ 73
D + LRK+ + S+ DGSA + QG T V A VYGP V+ ++ ++H +
Sbjct: 2 DTSQTGRLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPAEVK-QARELHEKATVE-- 58
Query: 74 YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
VF + + DR T ++ +R + A+++ +HPRS I + + L DGG
Sbjct: 59 ----VFFRSKSGHQSCSDRLTEKV---VRSTLETAMLTALHPRSCISLTCQELHNDGGLL 111
Query: 134 CACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSG 192
C+NA+ LA+IDA + M+ ++ A +A+L + T ++D S +E T++
Sbjct: 112 ACCINASCLAVIDAAVSMKCHIAAVTAALTQEGTVVLDPSRQQEEEAKAVCTLSFESQES 171
Query: 193 KVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
K+ + D + L DI A A+++ K+
Sbjct: 172 KLVSTHTTGHFSKDEFQKCLALCQAAAGDIFAFYQDALERRYHKL 216
>gi|73947485|ref|XP_852838.1| PREDICTED: exosome complex component RRP46 [Canis lupus familiaris]
Length = 235
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALNSDGTLV 166
>gi|426388821|ref|XP_004060830.1| PREDICTED: exosome complex component RRP46 [Gorilla gorilla
gorilla]
Length = 235
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGITCALDSDGTLV 166
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
gi|397482601|ref|XP_003812509.1| PREDICTED: exosome complex component RRP46 [Pan paniscus]
gi|410210198|gb|JAA02318.1| exosome component 5 [Pan troglodytes]
gi|410248686|gb|JAA12310.1| exosome component 5 [Pan troglodytes]
gi|410287660|gb|JAA22430.1| exosome component 5 [Pan troglodytes]
Length = 235
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLV 166
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 15 GRRGH--ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLIN 71
G RG LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ +
Sbjct: 20 GPRGPACSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVI 79
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ + + E K+R R R T E A ++ +HPR+ I + ++V+ G
Sbjct: 80 LRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVISDAGS 128
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 129 LLACCLNAACMALVDAGVPMRALFCGVTCALNSDGTLV 166
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
+R++ C L + DGS + G TKV++AVYGP V+ NK I +++ + + +
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMS 60
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC-VN 138
+ E K + KT E AI++ +HPRS I + ++++ D G+ +C +N
Sbjct: 61 AVKE-KVMEKIVAKTCE----------QAIIASLHPRSAIQVVLQIVH-DSGSLLSCLIN 108
Query: 139 AATLALIDAGIPMREYVVA-CSASLAGDTPLVD--ISHLEET-------LGGPNLTVAAL 188
AA L+L+ AG+PMR +V+ C A D LVD I+ +++ NL + ++
Sbjct: 109 AACLSLVHAGLPMRNMIVSVCCAVTNNDEYLVDPTIAEIQDCKCVLTFAFESKNLDIVSI 168
Query: 189 PLSGKVAVMELSQKLHL 205
SG V + Q L L
Sbjct: 169 FTSGLFTVEQYFQCLQL 185
>gi|149722162|ref|XP_001500390.1| PREDICTED: exosome complex component RRP46-like [Equus caballus]
Length = 235
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVISDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGKVA 195
+NAA +AL+DAG+PMR + +L D T ++D + +E LT A + K+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFALDSVERKL- 192
Query: 196 VMELSQKLHLD 206
+M ++ L+ D
Sbjct: 193 LMSTTKGLYSD 203
>gi|348552426|ref|XP_003462029.1| PREDICTED: exosome complex component RRP46-like [Cavia porcellus]
Length = 240
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 30 GCSLRHFACEQNLLSRPDGSATFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 89
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 90 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVISDAGSLLACC 138
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+N A +AL+DAGIPMR + +L D LV
Sbjct: 139 LNVACMALVDAGIPMRALFCGVTCALDSDGTLV 171
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 166
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 27 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 86
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 87 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 135
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 136 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 168
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 166
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 9/202 (4%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV-LINFQYSMAVFSTGERK 85
+ G + + GSAY E G TKV+ +V+GPR +K ++ V +N S F+T
Sbjct: 2 QTGPTTAASGSAYAEFGKTKVIVSVFGPR--ESKKAMMYSDVGRLNCNVSYTTFAT---P 56
Query: 86 TRPRG-DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLAL 144
R +G D K E S L +A+ A+M P++ +D+F VL++ G + ++ A+LAL
Sbjct: 57 VRGQGADNK--EYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLAL 114
Query: 145 IDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLH 204
DAGI M + V + S S ++D + EE +L VA +P ++ + L+ +
Sbjct: 115 ADAGIMMYDLVTSVSVSCFRKNIIIDPTSDEEAWQDGSLVVAFMPARKEITQLTLTGEWS 174
Query: 205 LDHLPRVLDCALKGCADIHAIL 226
+ ++ + C+ + IL
Sbjct: 175 DGRITNAVELCMDACSKLGDIL 196
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 58 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 117
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 118 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 166
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 167 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 199
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K R R R T E A ++ +HPR+ I + ++++ G C
Sbjct: 85 GLPGVAE-KNRERMIRNTCE----------AVVLGALHPRTSITVVLQIVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLV 166
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex component RRP46 isoform 1 [Nomascus
leucogenys]
gi|441654056|ref|XP_004091049.1| PREDICTED: exosome complex component RRP46 isoform 2 [Nomascus
leucogenys]
Length = 235
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 RLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLV 166
>gi|294927834|ref|XP_002779184.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
gi|239888189|gb|EER10979.1| exonuclease RRP41, putative [Perkinsus marinus ATCC 50983]
Length = 192
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
G ++N Y + F+T +RK R GDR ++E L L++ + A+++E+ P+S ID+ +
Sbjct: 4 QGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLT 63
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLE-ETLGGPN 182
+LQ DG ACVNAA AL+DAGIP+++ AC+ L + P+VD++H E E GG
Sbjct: 64 ILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEGCGGAV 123
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+TVA ++ + L K++++ + A++G + T I++
Sbjct: 124 VTVAVYQRRKELNYLCLEGKINIESFESAANLAIEGAVTAVRAMRTFIQE 173
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 32 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 91
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 92 GVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVISDAGSLLACCLNA 140
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 141 ACMALVDAGVPMRALFCGVTCALNSDGTLV 170
>gi|395836960|ref|XP_003791414.1| PREDICTED: exosome complex component MTR3 [Otolemur garnettii]
Length = 272
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAGI M + VV C S A G P L+D + LEE +LT
Sbjct: 153 DGGSALAAALTAAALALADAGIEMYDLVVGCGLSRAPGPAPTWLLDPTRLEEERAAASLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 213 VALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 12 RNDGRRGHEL--RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
R DG R ++ R + C +G+ +QS GSAY+E+G TKVLA+V+GPR V K +
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N +Y A F++ ++ RG+ K ++ L L Q + + + ++P+S+ID+ + VL+ D
Sbjct: 97 LNVEYKEAPFAS---RSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDD 153
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAG 164
G + AA LAL DA I + + V+ S L G
Sbjct: 154 GSAIPTAITAAALALSDASINLFDLVIGASVKLCG 188
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R+DGR ++LR + C V +++ GSA QG+TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ ER E + L++ + + + +P + I V+V+ DG
Sbjct: 65 IWKPKTGQIGKLER-----------ECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPN 182
+NA+ AL+DAGIP++ VA S L+ + ++ D + +EE L PN
Sbjct: 114 ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN 173
Query: 183 LTVAALP 189
V+ +P
Sbjct: 174 APVSVVP 180
>gi|355686801|gb|AER98191.1| exosome component 5 [Mustela putorius furo]
Length = 236
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 15 GRRGHE--LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLIN 71
G RG LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ +
Sbjct: 22 GPRGPSCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVI 81
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ + + E K+R R R T E A ++ +HPR+ I + ++V+ G
Sbjct: 82 LRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGS 130
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 131 LLACCLNAACMALVDAGVPMRALFCGVTCALNADGTLV 168
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R+DGR ++LR + C V +++ GSA QG+TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ ER E + L++ + + + +P + I V+V+ DG
Sbjct: 65 IWKPKTGQIGKLER-----------ECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPN 182
+NA+ AL+DAGIP++ VA S L+ + ++ D + +EE L PN
Sbjct: 114 ALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN 173
Query: 183 LTVAALP 189
V+ +P
Sbjct: 174 APVSVVP 180
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 11/220 (5%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHG 66
+R DGR + RKI + GV +Q+ GSAY+E NTKVL +V+ PR + R +G
Sbjct: 38 NNKIRKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNG 97
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ F++ A F ERK D + ++S+ L++++ A+ P Q+D++ +L
Sbjct: 98 EIYCEFKF--APFYGLERKGHIM-DLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLL 154
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
DG A + AA LAL DAGIPM + + + + + D +D + EE
Sbjct: 155 DNDGSCLSAAITAAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEEKFCKSFFKNK 214
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
+ ++ ++ LS ++ + +V + G I+ IL
Sbjct: 215 ----TSEIGIISLS---YMPEMAQVTEITQSGTVSINTIL 247
>gi|425733482|ref|ZP_18851802.1| ribonuclease PH [Brevibacterium casei S18]
gi|425481922|gb|EKU49079.1| ribonuclease PH [Brevibacterium casei S18]
Length = 241
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ELR+++ + ++GSA IE GNT+VL A V + +K G +
Sbjct: 3 RADGRGADELREVKITRNWITTAEGSALIEFGNTRVLCAASLTEGV-PRWLKGQGRGWVT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +T R TR K T EIS + +++ A I + + + +VLQ
Sbjct: 62 AEYAMLPRATDSRSTRESVKGKLGGRTHEISRLIGRSLRAVIDMTKLGENTLVLDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA-------GI------PMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +A+ DA G+ P+ + V A S + PL+D+ ++
Sbjct: 122 ADGGTRTASITGAYVAMADAIDKGRSSGLIPAAHQPLTDSVAAISVGIVDGQPLLDLPYV 181
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADI 222
E++ ++ V + SGK ++ + + D L +LD A KGCAD+
Sbjct: 182 EDSTAETDMNV-VMTGSGKFVEVQGTAEGAPFDRDELSSLLDLAAKGCADL 231
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + C + +S GSA QG TKVLAAVYGP+ KS S+ +
Sbjct: 5 RPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + ++P + + V+V+ DG
Sbjct: 65 IWKPKTGQIGKVEK-----------EYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVA--CSASLAGDTPLVDISHLEETLGG------PN 182
+NAA AL+DAGIP++ VA CS + +G L EE + PN
Sbjct: 114 ALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPN 173
Query: 183 LTVAALP 189
V+ LP
Sbjct: 174 TIVSVLP 180
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GRSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + +V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVPQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 166
>gi|397669729|ref|YP_006511264.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
gi|395141466|gb|AFN45573.1| tRNA nucleotidyltransferase [Propionibacterium propionicum F0230a]
Length = 239
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
LR DGRR +LR++R G ++GS +E G T+VL A V PR R+ +
Sbjct: 3 LRIDGRRADQLREVRITRGWLDHAEGSVLVEFGKTRVLVAASVTVGVPRWRRDTGLG--- 59
Query: 67 SVLINFQYSM---AVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM A S +R++ R R +T EIS + +++ A + + I +
Sbjct: 60 --WVTAEYSMLPRATHSRSDRESVRGRIGGRTHEISRLVGRSLRAVVDYSALGENTIVLD 117
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P+++ V A S PL+D+
Sbjct: 118 CDVLQADGGTRTAAITGAYVALADAVAHLRELDVLKGEPLKDSVAAVSVGFVEGVPLLDL 177
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADI 222
++ E++ G ++ + + V +++ + L ++LD GCA++
Sbjct: 178 AYEEDSQAGTDMNIVMTGSGDFIEVQGTAERTPFNRADLNQLLDLGAAGCAEL 230
>gi|57087309|ref|XP_546833.1| PREDICTED: exosome complex component MTR3 [Canis lupus familiaris]
Length = 272
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-------------IKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGSERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFA-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD---TPLVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C S + T L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSRTPEPAPTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 213 VALMPVLNQVAGLLGSGEGGPPESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|426242933|ref|XP_004015323.1| PREDICTED: exosome complex component RRP46 [Ovis aries]
Length = 235
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKT 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGKVA 195
+NAA +AL+DAG+PMR + +L D T ++D + +E LT A + K+
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFALDSVERKL- 192
Query: 196 VMELSQKLHLD 206
+M ++ L+ D
Sbjct: 193 LMSTTKGLYSD 203
>gi|296268927|ref|YP_003651559.1| ribonuclease PH [Thermobispora bispora DSM 43833]
gi|296091714|gb|ADG87666.1| ribonuclease PH [Thermobispora bispora DSM 43833]
Length = 247
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 23/243 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGRR +LR + + ++GS +E G TKVL A + K G +
Sbjct: 3 RSDGRRPDQLRPVTITRNWLAHAEGSVLVEFGATKVLCAATVEAGNVPRWRKGSGLGWVT 62
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +TG R R K T EIS + +A+ A + +V + I I +VLQ
Sbjct: 63 AEYAMLPRATGTRSERESVKGKIGGRTHEISRLIGRALRACVDFKVMGENSIIIDCDVLQ 122
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +AL DA G P+ V A S + G PL+D+ + E+
Sbjct: 123 ADGGTRTAAITGAFVALADAVAWMRANEVCLGDPLVNSVSAVSVGIVGSEPLLDLCYEED 182
Query: 177 TLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+ ++ V ++G A +E+ D L +LD A GCA++ I A+
Sbjct: 183 VVAETDMNVV---MTGAGAFVEVQGTAEGAPFGRDQLNALLDLATAGCAELARIQAEALG 239
Query: 232 QHL 234
+ L
Sbjct: 240 RDL 242
>gi|260906180|ref|ZP_05914502.1| ribonuclease PH [Brevibacterium linens BL2]
Length = 240
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR++ + ++GSA +E GNT+VL A V + +K G +
Sbjct: 1 MRADGRNADELREVTITRNWINTAEGSALVEFGNTRVLVAASLTAGV-PRWLKGQGRGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T R TR K T EIS + +++ A I + + + + +VL
Sbjct: 60 TAEYAMLPRATDSRNTRESVKGKLGGRTHEISRLIGRSLRAVIDLDKLGENTLVLDCDVL 119
Query: 127 QADGGNFCACVNAATLALIDA-------GI------PMREYVVACSASLAGDTPLVDISH 173
QADGG A + A +AL DA GI P+++ + A S + P++D+ +
Sbjct: 120 QADGGTRTASITGAYVALADAIDKGRSTGIIPAANNPIKDSIAAISVGIIDGEPVLDLPY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAI 225
+E++ ++ V + SG+ ++ + + D L +LD A KGCAD+ I
Sbjct: 180 VEDSRADTDMNV-VMTGSGQFVEVQGTAEGAPFDRDELGTLLDLAAKGCADLTGI 233
>gi|431911571|gb|ELK13728.1| Exosome complex exonuclease RRP46 [Pteropus alecto]
Length = 231
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 15 GRRGH--ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLIN 71
G RG LR C + S+ DGSA QG+T +LA VYGP V+ +K I ++ +
Sbjct: 16 GPRGPVCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVI 75
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
+ + + E K+R R R T E A ++ +HPR+ I + ++V+ G
Sbjct: 76 LRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVISDAGS 124
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
C+NAA +AL+DAG+PMR + +L D LV
Sbjct: 125 LLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLV 162
>gi|30794378|ref|NP_082550.1| exosome complex component MTR3 [Mus musculus]
gi|81875189|sp|Q8BTW3.1|EXOS6_MOUSE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|26353554|dbj|BAC40407.1| unnamed protein product [Mus musculus]
gi|109734233|gb|AAI16986.1| Exosome component 6 [Mus musculus]
gi|111599953|gb|AAI19083.1| Exosome component 6 [Mus musculus]
Length = 273
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-------------KSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS R+ G + E+ L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 153
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASL-AGDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SL G +P L+D + LEE LT
Sbjct: 154 DGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLT 213
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 214 VALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCL 260
>gi|417397593|gb|JAA45830.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 5 TEYGGGLRNDGRRGH--ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKS 61
+EYG + G RG LR C + S+ DGSA QG+T +LA VYGP V+ +K
Sbjct: 13 SEYG---TDPGSRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKE 69
Query: 62 IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
I ++ + + + + E K+R R R T E A ++ +HPR+ I +
Sbjct: 70 IFNKATLEVILRPKIGLPGVAE-KSRERLIRNTCE----------AVVLGVLHPRTSITV 118
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGG 180
++V+ G C+NAA +AL+DAG+PM+ + +L D T ++D + +E
Sbjct: 119 VLQVISDAGSLLACCLNAACMALVDAGVPMQALFCGVTCALDADGTLMLDPTAKQEKEAR 178
Query: 181 PNLTVA 186
LT A
Sbjct: 179 AVLTFA 184
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLVRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGNLV 166
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLVRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGNLV 166
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 29/238 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR ++LR++ V S++DGS+ Q +T L AVYGP V++ L++
Sbjct: 4 RADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKS------SKELLD 57
Query: 72 FQYSMAVFSTGERKTRPR------GDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
VF RP+ D I LRQA+ I +PR+ I + V+V
Sbjct: 58 KATVQTVF-------RPKTGLAGVDDHVCEAI---LRQALEPVIQRTANPRTSITVIVQV 107
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYV--VACSASLAGDTP-----LVDISHLEETL 178
+ DG +N+A++ALIDAG+PM + V C+ A D L+D + E+T
Sbjct: 108 MHDDGALLACALNSASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTA 167
Query: 179 GGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
T A + ++ +L +D ++ A K A++ A + ++++ K
Sbjct: 168 ATSIATFAFESTNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERKFSK 225
>gi|410982976|ref|XP_003997820.1| PREDICTED: exosome complex component RRP46 [Felis catus]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L + LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVTCALDSEGTLV 166
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 1 MDLLTEYGGGLRNDGR-----RGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR 55
M+L T G G D G LR C + S+ DGSA QG+T VL VYGP
Sbjct: 5 MELGTSTGAGSGTDADLSPRGSGCSLRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPA 64
Query: 56 PVR-NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH 114
V+ +K I ++ + + + + E K+R R R T E A ++ +H
Sbjct: 65 EVKVSKEIFNKATLEVILKPKIGLPGVAE-KSRERLIRTTCE----------AVVLGTLH 113
Query: 115 PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
PR+ I + ++++ G C+NAA LAL+DAG+P+R + +L D LV
Sbjct: 114 PRTSITVVLQIVSDAGSLLACCLNAACLALVDAGVPLRALFCGVTCALDLDGGLV 168
>gi|158819077|ref|NP_001103659.1| exosome complex component MTR3 [Bos taurus]
gi|157743163|gb|AAI53218.1| EXOSC6 protein [Bos taurus]
Length = 272
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-------------VHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPRP + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRPAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA---GDTPLVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C S A L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSRAPAPAPAWLLDPTLLEEERASAGLT 212
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA V+ + + + L+GC ++ +L +
Sbjct: 213 VALMPVLNQVAGVLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 259
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAV 78
E+R I C L S+ DGSA G+T L+AVYGP VR K + + +V + F+ V
Sbjct: 5 EMRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGV 64
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
P K E+SL AI+S HPR+ I I V+ +Q GG VN
Sbjct: 65 ---------PSISDKIKEVSLN--NICKTAILSSQHPRTSISIIVQEMQDYGGLLACSVN 113
Query: 139 AATLALIDAGIPMREYVVA 157
+A LAL++AGIP++ YV A
Sbjct: 114 SACLALLNAGIPLK-YVFA 131
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLVRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGNLV 166
>gi|344298319|ref|XP_003420841.1| PREDICTED: exosome complex component RRP46-like [Loxodonta
africana]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVLLRPKTGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVISDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDADGNLV 166
>gi|390371124|dbj|GAB65005.1| hypothetical protein PCYB_042070 [Plasmodium cynomolgi strain B]
Length = 268
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R + R+ +E+R + +LG SD S + GNTK+LA +YGP+P + G
Sbjct: 28 GTFRRINNRKNNEIRDMFIKLGADGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGK 87
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V + + S+ + G D I L + VS+ I+ + +P+ I+I ++Q
Sbjct: 88 VFLEIK-SLNMNDDGA------NDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQ 140
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSAS--LAGDTP----LVDISHLEE 176
DGG A + +LALI+A I MR+ +V+ + + + +T LVD+ LEE
Sbjct: 141 NDGGCLSATLTCISLALINAQIKMRDIIVSVNVNSIICPNTKRVFHLVDVDSLEE 195
>gi|444518498|gb|ELV12200.1| Exosome complex component RRP46 [Tupaia chinensis]
Length = 235
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E KTR R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KTRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NA +AL+DAG+PM+ + +L D LV
Sbjct: 134 LNATCMALVDAGVPMQALFCGVTCTLDSDGALV 166
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAV 78
ELR C + S+ DGSA QG+T V+ AVYGP V+ +K ++ + F+ + +
Sbjct: 12 ELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKATLEVIFKPKVGI 71
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
E K + R R T E +++ +HPRS I+I ++V+ G CVN
Sbjct: 72 PGCSE-KFQERLIRNTCE----------TIVLTALHPRSSINIIIQVMHNAGSLLSCCVN 120
Query: 139 AATLALIDAGIPMREYV--VACSASLAGDTPLVDISHLEE 176
+ +AL+DAG+PM V V CS S GD L S E+
Sbjct: 121 STCMALLDAGLPMSCLVAAVTCSLSCDGDIILDPTSQQEK 160
>gi|395748070|ref|XP_003778708.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component MTR3
[Pongo abelii]
Length = 272
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L + + A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDXR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SLA G P L+D + LEE LT
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLT 212
Query: 185 VAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA + S + L + + L+GC ++ +L ++
Sbjct: 213 VALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSL 259
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 97/171 (56%), Gaps = 17/171 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSVL- 69
R DGRR +++R + G+ +++DGSA QGNT VLAAVYGP P ++ + + G+ L
Sbjct: 5 RRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLD 64
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
++F+ + S+ + +E LR+++ ++ +PR+ + + ++V+ D
Sbjct: 65 VSFKPESGITSSAD-----------AESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDD 113
Query: 130 GGNFCACVNAATLALIDAGIPMREY---VVAC-SASLAGDTPLVDISHLEE 176
G A +NAAT+AL++AG+ M V C +A+++G + L+D EE
Sbjct: 114 GAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEE 164
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 21/166 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSVL- 69
R DGR G+ELR G ++DGSA + G++ VLA+VYGP RN ++ K + L
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARNWRAEKTDKATLD 67
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+ + ++ ER E +R+ + ++++ PR+ I I V+V++ +
Sbjct: 68 VCFKLEKGITTSKER-----------EYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDN 116
Query: 130 G-------GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPL 168
G + +NA +LAL+DAG+PM V A S G +PL
Sbjct: 117 GSISFPLFSYYAFAINAVSLALMDAGVPMLSVVTATSKRFLG-SPL 161
>gi|84999242|ref|XP_954342.1| exosome complex exonuclease rrp41 [Theileria annulata]
gi|65305340|emb|CAI73665.1| exosome complex exonuclease rrp41, putative [Theileria annulata]
Length = 245
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 25/239 (10%)
Query: 10 GLRNDGRRGHELRKIRCRLGV-----FSQSDGSAYIEQGNTKV----LAAVYGPRPVRNK 60
GLR DGRR ELR + G F DG + I QG K+ + VYG + +
Sbjct: 11 GLRIDGRRKDELRNTKIFFGSETSVDFLNYDGVSEILQGLNKLEVKGVKNVYG---ILEE 67
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ + +L+ ST ++ +R ++++ ++ I+S + S I
Sbjct: 68 KVDIQCEILL---------STDKKVKNSPNERLIKDLAMAVKSTYQEMIISHCYKTSAIS 118
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF+ +++ DG +NA LALIDAG+ +++ V + + S T L D + +E
Sbjct: 119 IFINIIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTDPNQMEINAST 178
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
L +A + + M+ K+ L+ + D L G I ++Q LI A
Sbjct: 179 ATLCIAFSSSNNNIIYMDYKSKIALEDFKSLFDSCLAG----SRIFTEYVRQRLINYAN 233
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDTGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDPDGNLV 166
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR+I C G+ S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 16 LRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKATLEVMLRPKVGLP 75
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
ER +R + +KT E A ++ +HPRS I I ++V+ G +C+NA
Sbjct: 76 GVYER-SREQMIKKTCE----------AVVLGTLHPRSSITIVLQVITDAGSLLASCLNA 124
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPL-VDISHLEETLGGPNLTVAALPLSGKVAVME 198
A + L+DAG+PM + +L D +D + +E LT A + KV +
Sbjct: 125 ACMGLMDAGLPMGSLFCGVTCALDADGNFTLDPTAKQEKEAQTVLTFAIDSIEKKVLMSS 184
Query: 199 LSQKLHLDHLPRVL 212
+ ++ L + +
Sbjct: 185 MKGTCSVEQLQQCV 198
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 26 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 85
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 86 GVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDTGSLLACCLNA 134
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 135 ACMALVDAGVPMRALFCGVTCALDPDGNLV 164
>gi|347582673|ref|NP_001231590.1| exosome component 5 [Sus scrofa]
Length = 235
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 14/188 (7%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVRKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVISDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGKVAVME 198
A +AL+DAG+PMR + +L D T ++D + +E LT A + K+ +M
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGTFMLDPTAKQEKEARAVLTFALDSVERKL-LMS 195
Query: 199 LSQKLHLD 206
++ L+ D
Sbjct: 196 TTKGLYSD 203
>gi|290559254|gb|EFD92594.1| Exoribonuclease, phosphorolytic domain 2 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 145
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
FS +R +P DR+ EIS + A++ AI+ E PR+ I++ V + QAD G CA +
Sbjct: 2 FSVPDR-AKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQADAGTRCASLT 60
Query: 139 AATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL----GGPNLTVAALPLSGKV 194
A +A DAG+PMR+ V A +A GD +D+S EE G ++ +A LP ++
Sbjct: 61 AGAMACADAGLPMRDLVAAVAAGKIGDHVCLDLSKEEEDFHEGEGATDVPIAFLPSKNEI 120
Query: 195 AVMELSQKLHLDHLPRV 211
+++L ++ D L +V
Sbjct: 121 LLLQLDGRVSRDELKKV 137
>gi|237837415|ref|XP_002368005.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965669|gb|EEB00865.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|221509233|gb|EEE34802.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 352
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 128/297 (43%), Gaps = 85/297 (28%)
Query: 11 LRNDGRRGHELRKIRCRL---------------------------------------GVF 31
LR DGRR HELR++R GV
Sbjct: 21 LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80
Query: 32 SQSDGSAYIEQGNTKVLAAVYGPRP------------------------VRNKSIKVHG- 66
+ +DG + + G+TKV A V+GPRP V + G
Sbjct: 81 THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140
Query: 67 -SVLINF----------------QYSMAVFSTGERK--TRPRGDRKTSEISLQLRQAVSA 107
SVL + +A FS R TR G + E++L +R+ V +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGVRKVVES 200
Query: 108 AIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-- 165
I+++ PRS I +FV V++ DGG A ++AA+LAL+DAGI +++V A S
Sbjct: 201 VILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAMSCVYMPRQL 260
Query: 166 TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
TPL+D E G P+LT+A L SG+V++++L ++ D ++ + GC ++
Sbjct: 261 TPLLDPPRAELQTGAPSLTLAMLVSSGEVSLLQLDGQVSTDVFEQMYEACAAGCREV 317
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + C V ++ GSA QG TKV AAVYGP+ K+ S+ +
Sbjct: 5 RADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ + TG+ +G + L++ + + + ++P + + V+V+ DG
Sbjct: 65 TWKPN-----TGQIGQVEKG------YEMILKRTLESICIRSIYPNTTTSVIVQVVHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEET-------LGGPN 182
+NAA AL+DAGIP+R VA S+A ++ ++ D + EE L PN
Sbjct: 114 ALLPCAINAACAALVDAGIPLRHLAVAICCSVADNSCIILDPTKQEEEKAKAFAYLVFPN 173
Query: 183 LTVAALP 189
++ LP
Sbjct: 174 TNISVLP 180
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + C + ++ GSA QG TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + ++P + + V+V+ DG
Sbjct: 65 IWKPKTGQIGKLEK-----------EYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVA--CSASLAGDTPLVDISHLEETLGG------PN 182
+NAA AL+DAGIP++ VA CS + +G L EE + PN
Sbjct: 114 ALLPCAINAACTALVDAGIPLKHLAVAICCSVTDSGCIILDPTKEEEEKMKAYINLVFPN 173
Query: 183 LTVAALP 189
V+ LP
Sbjct: 174 TIVSVLP 180
>gi|383785892|ref|YP_005470461.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
gi|383108739|gb|AFG34342.1| polyribonucleotide nucleotidyltransferase [Fervidobacterium
pennivorans DSM 9078]
Length = 694
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR ++R I C +G+ ++ GSA +G T+ L V P + I G
Sbjct: 319 GIRADGRGPKDIRPISCEVGLLPRTHGSALFTRGETQSLGIVTLGSPAEEQIIDTLIEEG 378
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ Y+ FSTGE K R+ L R AV A I SE I + E+L
Sbjct: 379 TKRFMLHYNFPPFSTGEVKPLRLSRREIGHGHLAER-AVKAVIPSEDEFPYVIRVVSEIL 437
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYV--VACSASLAGDTP--LVDISHLEETLGGPN 182
+++G + A V +A+LAL+DAG+P++++V VA L GD L DI LE+ G +
Sbjct: 438 ESNGSSSMATVCSASLALMDAGVPIKKHVAGVAMGLILEGDKSVILTDIIGLEDHWGDMD 497
Query: 183 LTVA 186
VA
Sbjct: 498 FKVA 501
>gi|373253495|ref|ZP_09541613.1| tRNA nucleotidyltransferase [Nesterenkonia sp. F]
Length = 255
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 21/249 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR+DGR +LR++R G + ++GS IE G T+VL V + +K GS +
Sbjct: 6 LRSDGRTPDQLREVRITRGWSTHAEGSVLIEFGETRVLCTASFEETV-PRWLKGRGSGWV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +TG R R K T EIS + +A+ AA+ +E + I + +VL
Sbjct: 65 TAEYAMLPRATGSRSPRESVKGKIGGRTHEISRLVGRALRAAVDTEALGENMITLDCDVL 124
Query: 127 QADGGNFCACVNAATLALIDAGIPMR-------------EYVVACSASLAGD-TPLVDIS 172
QADGG A + A +AL DA R V A S + D TP++D+
Sbjct: 125 QADGGTRTAAITGAYVALADAIEWARRKGHVARSAKVLTSSVAAISVGILPDGTPVLDLP 184
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADIHAILDTAI 230
+ E++ ++ V A V + ++ L R+LD AL+G A++ A+
Sbjct: 185 YTEDSTAETDMNVVATGEGDFVEIQGTAEGAAFGRGELDRLLDLALQGTAELTEHQRRAL 244
Query: 231 KQHLIKVAG 239
+ L G
Sbjct: 245 AEELPTTPG 253
>gi|107104436|ref|ZP_01368354.1| hypothetical protein PaerPA_01005513 [Pseudomonas aeruginosa PACS2]
Length = 239
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ D L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPDELNAMLELAQQGMQELFELQRAALAE 239
>gi|295396715|ref|ZP_06806861.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294970461|gb|EFG46390.1| tRNA nucleotidyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 248
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 20/245 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ +ELR+++ G ++GS +E G T+VL A V + +K G
Sbjct: 1 MRFDGRQANELREVKITRGWLDHAEGSVLVEFGRTRVLCAASLTEGV-PRWMKGEGRGWA 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T R +R K T EIS + +++ A + + + + +VL
Sbjct: 60 TAEYAMLPRATHTRSSRESVKGKIGGRTHEISRLIGRSLRAVLDLSKLGENTLQVDCDVL 119
Query: 127 QADGGNFCACVNAATLALIDA--------GIP-----MREYVVACSASLAGDTPLVDISH 173
QADGG A + A +AL+DA IP +++ V A S + TP++D+ +
Sbjct: 120 QADGGTRTAAITGAYVALVDAVAKGKELGWIPKNAEVLKDSVAAISVGIVDGTPVLDLPY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAILDTAIK 231
E++ ++ V V V ++ D L +LD A GCA++ I +A+
Sbjct: 180 EEDSTAETDMNVVMTGSGAFVEVQGTAEGAPFDRAELGSLLDLAEHGCAELARIQASALA 239
Query: 232 QHLIK 236
Q L++
Sbjct: 240 QDLVR 244
>gi|348543409|ref|XP_003459176.1| PREDICTED: exosome complex component RRP46-like [Oreochromis
niloticus]
Length = 219
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR+ C + S+ DGSA QG+T V+A VYGP V+ +K I ++ + Q + +
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGLP 70
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
S ER ++ + R+T E SL L +HPRS + + ++VL DG C+NA
Sbjct: 71 SVRER-SQEQCVRETCEASLLLT----------LHPRSSLTLILQVLHDDGSLLSCCLNA 119
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PM + +++ D ++
Sbjct: 120 ACMALMDAGLPMSCLFCGVTCAISTDGQII 149
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 14 DGRRGHEL--------RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-SIKV 64
D +G EL RKI + GV +Q+ GSAYIE G+TKV+ +V+ PR + N+ +
Sbjct: 31 DALKGQELEVDACDGQRKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGL 90
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
G V F+Y A FS +R + ++++S+I +R+A+ + + P Q+D++
Sbjct: 91 KGEVYCEFKY--APFSCKKRMMHQQNNEEKQSSDI---MRKALESTVCLHELPNFQVDVY 145
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACS 159
VL+ DG A + A +AL AG+PM + + + +
Sbjct: 146 AMVLEEDGSALSAAIIAGGVALTLAGVPMYDQITSVT 182
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 12/138 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA + QG+T VLAAVYGP V+ ++ I ++ + F+ + +
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKIGLP 70
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K + R R T E + +++ +HPRS ++I ++V+Q G C+NA
Sbjct: 71 GCAE-KLQERLLRNTCE----------SVVLAILHPRSGVNIVLQVIQDSGSLLSCCINA 119
Query: 140 ATLALIDAGIPMREYVVA 157
A +AL+D+ +PM+ V A
Sbjct: 120 ACMALVDSAVPMKCLVSA 137
>gi|308802860|ref|XP_003078743.1| ribonuclease PH (ISS) [Ostreococcus tauri]
gi|116057196|emb|CAL51623.1| ribonuclease PH (ISS) [Ostreococcus tauri]
Length = 693
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 12 RNDGRRGHE-LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL- 69
R+DGR E LR + L S++ GS+Y+E GNTKV AVYGPR R + V+ V+
Sbjct: 461 RSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRVDDLTVNTGVID 520
Query: 70 -----INFQYSMAVFSTGERKTRPRGDRKTS----EISLQLRQAVSAAIMSEVHPRSQID 120
+ F A+ R+ D S E+S ++ + A ++E PR+Q+D
Sbjct: 521 VDVFRVPFARKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACALTETFPRAQVD 580
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
++V ++ +DGG A V AA+ AL AG+ M + AC G+ ++D + E G
Sbjct: 581 VYVTIMDSDGGEVVASVLAASAALARAGVEMADLASACELVRIGERLVLDPTEEECERGN 640
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+ +A + + E + D R L+ GC DT +++ L K
Sbjct: 641 GKVFLAQMSSEEGMVQGETFGRWTADESRRALEQCAAGCNR----FDTIVREALAK 692
>gi|225677984|gb|EEH16268.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 256
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 48/249 (19%)
Query: 43 GNTKVLAAVYGPRPVRNKSI--KVHGSVLINFQYSMAVFSTGERKTRP------------ 88
GNT V+ V+GP R +I+ ++A FS +RK +
Sbjct: 2 GNTIVICMVHGPAEGRRSEATGPAREGAIISVAVNIAGFSGVDRKKKSLAAGAGGGGGGG 61
Query: 89 RGDRKTS-EISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDA 147
GDR+ S ++++ LR A + + ++P S I + + VL +DG F AC+NA TLAL+DA
Sbjct: 62 GGDRQASTDLAIALRDAFQPHLHTHLYPHSTISLNISVLSSDGSLFAACINACTLALVDA 121
Query: 148 GIPMREYVVACSASLAGDT-------------------PLVDISHLEETLGGPNLTVAAL 188
GIPM + AC+ ++G PL+D+S EE P +TVA
Sbjct: 122 GIPMPGLLCACTVGMSGRASTPATPEMKRVGGINESLDPLLDMSMPEEQ-ELPFMTVANS 180
Query: 189 --------PLSGK-----VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
P+ + ++V+++ +H+ +L + GC + IL+ +K
Sbjct: 181 NPAPPGHDPMDDEEDNQMLSVVQMESGVHISYLETMFAVGFDGCKQVREILNGVLKAAGR 240
Query: 236 KVAGARGLG 244
KV G G
Sbjct: 241 KVLEGEGEG 249
>gi|311743617|ref|ZP_07717423.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
gi|311312747|gb|EFQ82658.1| tRNA nucleotidyltransferase [Aeromicrobium marinum DSM 15272]
Length = 240
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 24/231 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR IR G + GS IE G T+VL A V + K G +
Sbjct: 4 REDGRAVDQLRDIRITRGWLDHAQGSCLIEFGKTRVLCAAAASEGV-PRWRKGSGLGWVT 62
Query: 72 FQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +T +R +R R +T EIS + +++ A I + + I I +VLQ
Sbjct: 63 AEYAMLPQATHDRSSRESVKGRIGGRTHEISRLVGRSLRATIDDKALGENTITIDCDVLQ 122
Query: 128 ADGGNFCACVNAATLALID-----------AGIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +AL D AG P+ E V A S + P++D+ ++E+
Sbjct: 123 ADGGTRTAAITGAYIALADAVAHLKGLGATAGEPLVESVAAISVGIVDGVPMLDLPYVED 182
Query: 177 TLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADI 222
++ V ++G A +E+ Q L +L+ A GCAD+
Sbjct: 183 VRAHTDMNVV---MTGSGAFVEVQGTAEGQPFDKAELDALLELAAGGCADL 230
>gi|193700001|ref|XP_001942946.1| PREDICTED: exosome complex exonuclease MTR3-like [Acyrthosiphon
pisum]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR R + + G+ +Q+ GSAY+E G+TK++ +V+ P+ V NK ++ + +
Sbjct: 40 VRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVFDPKEVPNK-VEYAKTGEL 98
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ A FS +R+T R D + ++ +LR+A+ AI +I I V VL+ DG
Sbjct: 99 QCEFKFATFSCRQRRTYTR-DSEERQLCNELRRALEPAICRGEFANFEIHINVLVLENDG 157
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
A + AA LAL+D IPM + +VA S + + LVD ++ EETL
Sbjct: 158 SVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNKILVDPTYDEETL 205
>gi|403220758|dbj|BAM38891.1| exosome complex exonuclease rrp41 [Theileria orientalis strain
Shintoku]
Length = 254
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 8/214 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGV-----FSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
GLR DGRR ELRK + G F DG + + QG KV V GP+ S
Sbjct: 11 GLRLDGRRKDELRKTKLYCGSDCSVDFMDYDGVSELIQGLNKVQVLVKGPQEDPRSSKNT 70
Query: 65 HG--SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+G I+ + + V +T +R + +R ++SL ++ I+S + +++F
Sbjct: 71 YGIAEERIDIRCEI-VMATEKRVKNSQNERVIKDLSLSVKSTYQEMIISHYYKGCSLNVF 129
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
V +++ DG +NA +AL+DAG+ +++ V + + L D + +E
Sbjct: 130 VNIIEYDGSIKSTVLNAVGVALVDAGVAIKDLVSSSTVISLDSIILTDPNQMELKASTAV 189
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCAL 216
L VA + K+ M+ K+HL+ + +++ A
Sbjct: 190 LCVAVESSTDKIIYMDYKSKIHLEEINTMVEAAF 223
>gi|410447693|ref|ZP_11301785.1| tRNA adenylyltransferase [SAR86 cluster bacterium SAR86E]
gi|409979273|gb|EKO36035.1| tRNA adenylyltransferase [SAR86 cluster bacterium SAR86E]
Length = 234
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVHGS 67
R + R+ +E+R I LGV ++GSA I+ G+T V+ + PR +R +
Sbjct: 3 RKNNRKTNEMRSIEIELGVNKHAEGSALIKFGDTHVICTASIENHVPRWMRGSN-----E 57
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRKTSEISLQ------LRQAVSAAIMSEVHPRSQI 119
I +Y M ST ER R RG + + +Q LRQAV+ + + I
Sbjct: 58 GWITAEYGMLPRSTHERMNREAARGKQSGRTMEIQRLIGRSLRQAVNLKYLKD----KTI 113
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDA-------GIPMREYVVACSASLAGDTPLVDIS 172
+I +V+QADGG A ++ A +AL +A ++EYV A S L TP +D+
Sbjct: 114 NIDCDVIQADGGTRTASISGACVALFEAIKNSHDDQRAIKEYVAAVSIGLKDGTPFLDLD 173
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQK--LHLDHLPRVLDCALKGCADI 222
+ E++ +L V G + + ++K D L ++ A G ADI
Sbjct: 174 YDEDSDADTDLNVVMTENGGIIEIQGTAEKNPFTKDQLDEMIMSASNGIADI 225
>gi|419760466|ref|ZP_14286745.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
gi|407514569|gb|EKF49384.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
H17ap60334]
Length = 697
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
G+R DGR+ E+R I C +GV ++ GSA +G T+ L V P+ + +I G
Sbjct: 319 GIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEG 378
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FS GE K R G R+ L R A+ A + SE + + E+
Sbjct: 379 TKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAER-ALKAVVPSEEEFPYVVRVVSEI 437
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL----AGDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P+R +V + L + L DI LE+ G
Sbjct: 438 LESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQGLEDHWGDM 497
Query: 182 NLTVA 186
+ VA
Sbjct: 498 DFKVA 502
>gi|145346010|ref|XP_001417490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577717|gb|ABO95783.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D R R + L V + GSAY+E G+TK AVYGPR R + V L
Sbjct: 8 REDARADAHCRALVVALDVVPAAAGSAYVELGDTKASCAVYGPRRGRAELAGVDRGTLDV 67
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSE---------ISLQLRQAVSAAIMSEVHPRSQIDIF 122
Y A F+TG R + ++ +++A+SA++++E P++Q+D
Sbjct: 68 DAYR-APFATGARALDGANRARARGRGARTADDGLARTVKEALSASVLTESFPKTQVDAC 126
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
V VL A GG ACV AA+ AL AG+ R+ V AC + AG+ ++D + E
Sbjct: 127 VTVLDARGGEAVACVLAASAALARAGVACRDLVSACECARAGERMMLDPTREEIETSDGM 186
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ +A + A E + + D R LD GC A+L A++ +
Sbjct: 187 VFLAQMSSMEAYAKTETFGRWNADETERALDACAAGCNRFDAVLREALRAN 237
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR+ + S+ DGS+ QG+T +LA VYGP V+ +K I +V + Q M +
Sbjct: 10 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 69
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
S ER R + R+T E AA++ +HPRS + + ++V+ DG C+NA
Sbjct: 70 SVRER-AREQCVRETCE----------AALLLTLHPRSSLTVILQVVHDDGSLLSCCLNA 118
Query: 140 ATLALIDAGIPMREYV--VACSASLAGDTPLVDISHLEETLGGPNLTVA 186
A +AL+DAG+PM V C+ S G + D + +E + LT A
Sbjct: 119 ACMALMDAGLPMSRLFCSVTCAISKEGQI-ITDPTARQEKVSRALLTFA 166
>gi|217077873|ref|YP_002335591.1| polynucleotide phosphorylase/polyadenylase [Thermosipho africanus
TCF52B]
gi|257096711|sp|B7IE23.1|PNP_THEAB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217037728|gb|ACJ76250.1| polyribonucleotide nucleotidyltransferase [Thermosipho africanus
TCF52B]
Length = 697
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
G+R DGR+ E+R I C +GV ++ GSA +G T+ L V P+ + +I G
Sbjct: 319 GIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEG 378
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FS GE K R G R+ L R A+ A + SE + + E+
Sbjct: 379 TKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAER-ALKAVVPSEEEFPYVVRVVSEI 437
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL----AGDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P+R +V + L + L DI LE+ G
Sbjct: 438 LESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQGLEDHWGDM 497
Query: 182 NLTVA 186
+ VA
Sbjct: 498 DFKVA 502
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 32/182 (17%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGS--- 67
R D R ++LR C LG +++DGSA QG T VLAAVYGP P ++ +V G+
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVE 86
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V ++ Y +A S E++ ++ + AAI E PR+ I + +V +
Sbjct: 87 VTVHPHYGLATSSEKEKEG-------------AVKALLEAAICLERFPRTVIHVICQVYE 133
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
+GG +NAA+LA+I+AGI M+ V + SLA +P P+ T+ A
Sbjct: 134 DNGGLMACLMNAASLAVINAGIDMK--YVPLTVSLALISP-------------PSATMKA 178
Query: 188 LP 189
LP
Sbjct: 179 LP 180
>gi|23335847|ref|ZP_00121079.1| COG0689: RNase PH [Bifidobacterium longum DJO10A]
gi|189439894|ref|YP_001954975.1| ribonuclease PH [Bifidobacterium longum DJO10A]
gi|189428329|gb|ACD98477.1| RNase PH [Bifidobacterium longum DJO10A]
Length = 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 75
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 196 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249
>gi|317482025|ref|ZP_07941050.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|322688513|ref|YP_004208247.1| ribonuclease PH [Bifidobacterium longum subsp. infantis 157F]
gi|322690521|ref|YP_004220091.1| ribonuclease PH [Bifidobacterium longum subsp. longum JCM 1217]
gi|384202135|ref|YP_005587882.1| ribonuclease PH [Bifidobacterium longum subsp. longum KACC 91563]
gi|419853144|ref|ZP_14375980.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
2-2B]
gi|419854079|ref|ZP_14376871.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 44B]
gi|316916592|gb|EFV37989.1| ribonuclease PH [Bifidobacterium sp. 12_1_47BFAA]
gi|320455377|dbj|BAJ65999.1| putative ribonuclease PH [Bifidobacterium longum subsp. longum JCM
1217]
gi|320459849|dbj|BAJ70469.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
157F]
gi|338755142|gb|AEI98131.1| ribonuclease PH [Bifidobacterium longum subsp. longum KACC 91563]
gi|386408710|gb|EIJ23603.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
2-2B]
gi|386418149|gb|EIJ32616.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 44B]
Length = 254
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 71
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 131
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 132 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 191
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 192 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 245
>gi|23464887|ref|NP_695490.1| ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227545828|ref|ZP_03975877.1| ribonuclease PH [Bifidobacterium longum subsp. longum ATCC 55813]
gi|296453555|ref|YP_003660698.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|312133310|ref|YP_004000649.1| rph [Bifidobacterium longum subsp. longum BBMN68]
gi|419847570|ref|ZP_14370737.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
1-6B]
gi|419851271|ref|ZP_14374220.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 35B]
gi|23325477|gb|AAN24126.1| probable ribonuclease PH [Bifidobacterium longum NCC2705]
gi|227213944|gb|EEI81783.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 55813]
gi|291517381|emb|CBK70997.1| RNAse PH [Bifidobacterium longum subsp. longum F8]
gi|296182986|gb|ADG99867.1| ribonuclease PH [Bifidobacterium longum subsp. longum JDM301]
gi|311772524|gb|ADQ02012.1| Rph [Bifidobacterium longum subsp. longum BBMN68]
gi|386406527|gb|EIJ21529.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum 35B]
gi|386410566|gb|EIJ25344.1| tRNA adenylyltransferase [Bifidobacterium longum subsp. longum
1-6B]
Length = 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 75
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 196 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249
>gi|239622472|ref|ZP_04665503.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|61216065|sp|Q8G7I0.2|RNPH_BIFLO RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|239514469|gb|EEQ54336.1| ribonuclease PH [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 248
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 65
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 66 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 125
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 126 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 185
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 186 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 239
>gi|383809882|ref|ZP_09965395.1| tRNA adenylyltransferase [Rothia aeria F0474]
gi|383447417|gb|EID50401.1| tRNA adenylyltransferase [Rothia aeria F0474]
Length = 245
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 22/234 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +ELR I G ++GSA IE GNT+VL V + +K G ++
Sbjct: 6 REDGRACNELRPITITRGWSLNAEGSALIEFGNTRVLCTASFTEGV-PRWLKGEGKGWVS 64
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +TG R +R K T EIS + +++ A I + + I + +VLQ
Sbjct: 65 AEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMDALGENTIVLDCDVLQ 124
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL DA P+ + V A S + TP++D+ +
Sbjct: 125 ADGGTRTASITGAYVALADAIGWAKKNGLIASGANPLTDSVSAISVGIIDGTPMLDLPYT 184
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAI 225
E+ ++ V + SGK ++ + + D L +LD AL+G A++ I
Sbjct: 185 EDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELAQI 237
>gi|213691324|ref|YP_002321910.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697
= JCM 1222]
gi|213522785|gb|ACJ51532.1| ribonuclease PH [Bifidobacterium longum subsp. infantis ATCC 15697
= JCM 1222]
Length = 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 75
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 76 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 195
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 196 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 249
>gi|384198440|ref|YP_005584183.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320457392|dbj|BAJ68013.1| putative ribonuclease PH [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 254
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 14 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 71
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 131
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 132 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 191
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 192 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 245
>gi|256824846|ref|YP_003148806.1| RNAse PH [Kytococcus sedentarius DSM 20547]
gi|256688239|gb|ACV06041.1| RNAse PH [Kytococcus sedentarius DSM 20547]
Length = 288
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 5 TEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIK 63
+E G R+DGR +LR +R G + GS IE G T+VL AA + +P + +K
Sbjct: 16 SETTPGARHDGRAPDQLRDVRITRGWLDHAAGSVLIEFGRTRVLCAASF--QPGVPRWLK 73
Query: 64 VHGSVLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAIMSEVHPRSQI 119
G+ + +Y+M +T R R +G K T EIS L +A+ AA+ + + I
Sbjct: 74 GQGTGWVTGEYAMLPAATHTRSDRESVKGKVKGRTQEISRLLGRALRAAVDTSALGENTI 133
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDA--------GIP-----MREYVVACSASLAGDT 166
I +VLQADGG A + A +AL DA IP +R+ + A S +
Sbjct: 134 VIDCDVLQADGGTRTAAITGAWVALADAVAAGKASGDIPANAQVLRDSIQAISVGIVDGQ 193
Query: 167 PLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGC 219
P++D+ + E++ G ++ V V V ++ D L +LD A GC
Sbjct: 194 PVLDLDYPEDSGAGADMNVVMTGAGELVEVQGTAEGQTFDRAMLNALLDLAQDGC 248
>gi|391224436|ref|NP_001038817.2| exosome complex exonuclease RRP46 [Danio rerio]
Length = 230
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR+ + S+ DGS+ QG+T +LA VYGP V+ +K I +V + Q M +
Sbjct: 22 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 81
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
S ER R + R+T E AA++ +HPRS + + ++V+ DG C+NA
Sbjct: 82 SVRER-AREQCVRETCE----------AALLLTLHPRSSLTVILQVVHDDGSLLSCCLNA 130
Query: 140 ATLALIDAGIPMREYV--VACSASLAG 164
A +AL+DAG+PM V C+ S G
Sbjct: 131 ACMALMDAGLPMSRLFCSVTCAISKEG 157
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSV 68
G R DGR ++LR C ++ GSA QG+T VLAAVYGPRP R S+
Sbjct: 3 GSRGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRKGENPEKASI 62
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ ++ TG+ + +G + L++ + + + VHP + + ++V+
Sbjct: 63 EVVWKP-----KTGQSGKQEKG------YEMTLKRTLQSICLLTVHPNTTTSVILQVMGD 111
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
DG +NA+ AL+ AGIP++ VA + G+ ++ D S EE
Sbjct: 112 DGSLLPCAINASCAALVFAGIPLKHLAVAIGCGVLGNGAVILDTSKAEE 160
>gi|84494376|ref|ZP_00993495.1| ribonuclease PH [Janibacter sp. HTCC2649]
gi|84383869|gb|EAP99749.1| ribonuclease PH [Janibacter sp. HTCC2649]
Length = 254
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 22/230 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR +LR+IR ++GS IE G T+VL A V + +K G+ +
Sbjct: 7 RHDGRAPEDLREIRITRNWLDHAEGSVLIEFGRTRVLCAASFTEGV-PRWLKGKGTGWVT 65
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M ST R R K T EIS + +A+ A I ++ + I + +VLQ
Sbjct: 66 SEYEMLPRSTNTRSDRESRKGKVGGRTHEISRLIGRALRAVIDTKALGENTIVVDCDVLQ 125
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL+DA P+ + + A S + G P++D+ +
Sbjct: 126 ADGGTRTASITGAYVALVDAIEDARAKGLIAKNAQPLLDSIAAVSVGVVGGLPVLDLDYP 185
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQ----KLHLDHLPRVLDCALKGCA 220
E++ ++ V V V ++ D L +LD A GCA
Sbjct: 186 EDSTADTDMNVVMTGSGRYVEVQGTAEGADAAFDRDRLNELLDLAAAGCA 235
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|296477725|tpg|DAA19840.1| TPA: exosome component 5-like [Bos taurus]
Length = 242
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 21/198 (10%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKT 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG--NFC 134
+ E K+R R R T E A ++ +HPR+ I + ++V+ G N C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSKLNHC 133
Query: 135 -----ACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAAL 188
C+NAA +AL+DAG+PMR + +L D T ++D + +E LT A
Sbjct: 134 LWLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFALD 193
Query: 189 PLSGKVAVMELSQKLHLD 206
+ K+ +M ++ L+ D
Sbjct: 194 SVERKL-LMSTTKGLYSD 210
>gi|221488740|gb|EEE26954.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 352
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 127/297 (42%), Gaps = 85/297 (28%)
Query: 11 LRNDGRRGHELRKIRCRL---------------------------------------GVF 31
LR DGRR HELR++R GV
Sbjct: 21 LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEENNLAPFASGGVG 80
Query: 32 SQSDGSAYIEQGNTKVLAAVYGPRP------------------------VRNKSIKVHG- 66
+ +DG + + G+TKV A V+GPRP V + G
Sbjct: 81 THADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASGA 140
Query: 67 -SVLINF----------------QYSMAVFSTGERK--TRPRGDRKTSEISLQLRQAVSA 107
SVL + +A FS R TR G + E++L +R+ V +
Sbjct: 141 DSVLGQGGAAGSGGAAERASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGVRKVVES 200
Query: 108 AIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-- 165
I+++ PRS I +FV V++ DGG A ++AA+LAL+DAGI +++V A S
Sbjct: 201 VILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAMSCVYMPRQL 260
Query: 166 TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADI 222
TPL+D E G P+LT+A L S +V++++L ++ D ++ + GC ++
Sbjct: 261 TPLLDPPRAELQTGAPSLTLAMLVSSDEVSLLQLDGQVSTDVFEQMYEACAAGCREV 317
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAV 78
ELR + C G+ ++DGS+ QG+T+V+AA YGP V+ NK + ++ + F+ + +
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGI 73
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
E+ + +R + +++ +HPR+ + I V+V+Q G VN
Sbjct: 74 PGCSEKL-----------VEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVN 122
Query: 139 AATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEE 176
AA LA++DAG PMR + + ++ LV LE+
Sbjct: 123 AACLAMMDAGFPMRCMMCGITCAITEQDELVLDPTLEQ 160
>gi|398891259|ref|ZP_10644635.1| ribonuclease PH [Pseudomonas sp. GM55]
gi|398186940|gb|EJM74294.1| ribonuclease PH [Pseudomonas sp. GM55]
Length = 240
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 23/240 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR +LR IR ++GS +E G+TKV+ V P + +K G +
Sbjct: 2 IRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV-SVEPGVPRFLKGQGQGWL 60
Query: 71 NFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--E 124
+Y M +TGER R RG + +T EI + +++ AA+ ++ I ++V +
Sbjct: 61 TAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDIS 172
V+QADGG A + + +ALIDA G P+++ + A S + P++D+
Sbjct: 119 VIQADGGTRTASITGSMVALIDALKVIKKRGGLKGGDPVKQMIAAVSVGMYKGEPVLDLD 178
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 179 YLEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELARKGMNEIFELQKAAL 238
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQ 73
DG + R + +GV SQ+ GSA+ E GNTKV+AA YGP + + +++
Sbjct: 32 DGAKAQP-RSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQ-GFQETCILDCD 89
Query: 74 YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
+ FS G + + + E+S L ++ + +P+S I ++ VLQ DG F
Sbjct: 90 VKFSPFS-GVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAF 148
Query: 134 CACVNAATLALIDAGIPMREYVVACSASLAGDT 166
A +NAA++AL +AGI M + + A AS+ DT
Sbjct: 149 SAVINAASMALANAGIEMFDLLAA--ASVCFDT 179
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + C V ++ GSA QG TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ + +R E + L++ + + + ++P + + V+ DG
Sbjct: 65 IWKPNTGHVGQADR-----------EYEMILKKTLESICIRTIYPNTTTSVI--VVHDDG 111
Query: 131 GNFCACVNAATLALIDAGIPMREYVVA-CSASLAGDTPLVDISHLEET-------LGGPN 182
+NAA AL+DAGIP+R VA C + ++ ++D S EE L PN
Sbjct: 112 ALLPCAINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPN 171
Query: 183 LTVAALP 189
TV+ +P
Sbjct: 172 TTVSVVP 178
>gi|398939553|ref|ZP_10668646.1| ribonuclease PH [Pseudomonas sp. GM41(2012)]
gi|398163875|gb|EJM52024.1| ribonuclease PH [Pseudomonas sp. GM41(2012)]
Length = 240
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRASLDMSKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L+ A KG A+I + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMAEIFELQKAAL 238
>gi|429210808|ref|ZP_19201974.1| ribonuclease PH [Pseudomonas sp. M1]
gi|428158222|gb|EKX04769.1| ribonuclease PH [Pseudomonas sp. M1]
Length = 239
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNAREASRGKQGGRTLEIQRLIGRSLRAALDLTKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELS--QKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V + + L +L+ A +G +I + A+
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGEPFKPAELNAMLELAQQGMQEIFELQRAAL 237
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR--PVR 58
M T G R DGR ++LR++ C V S +DGSA G T V +V+G R PVR
Sbjct: 1 MSSSTNPNGAAREDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVR 60
Query: 59 NKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQ--LRQAVSAAIMSEVHPR 116
++ + ++ ++F+ G G RK ++ + + LR+ V A+ PR
Sbjct: 61 SE-LPDRSAIEVSFR------GVG-------GQRKVTDAAAENFLRECVDCALQVHEQPR 106
Query: 117 SQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL 162
SQ + V+Q DGG A +A LAL+DAG+PM V S++
Sbjct: 107 SQCAVAAHVVQDDGGVLAALASATCLALLDAGLPMTNVFVGVSSAF 152
>gi|300741332|ref|ZP_07071353.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
gi|300380517|gb|EFJ77079.1| tRNA nucleotidyltransferase [Rothia dentocariosa M567]
Length = 245
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +ELR I G +Q++GSA +E G+T+VL V + +K G +
Sbjct: 6 RADGRTLNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGV-PRWLKGEGKGWVT 64
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +TG R +R K T EIS + +++ A I + I + +VLQ
Sbjct: 65 AEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAIIDMNALGENTIVLDCDVLQ 124
Query: 128 ADGGNFCACVNAATLALIDA-------GI------PMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL D+ G+ P+++ V A S + TP++D+ +
Sbjct: 125 ADGGTRTASITGAYVALADSIAWAQRNGLLSPSDKPLKDSVSAISVGIIDGTPMLDLPYT 184
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAI 225
E+ ++ V + SGK ++ + + D L +LD AL+G A++ I
Sbjct: 185 EDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNALLDLALEGTAELARI 237
>gi|452911548|ref|ZP_21960215.1| Ribonuclease PH [Kocuria palustris PEL]
gi|452833185|gb|EME35999.1| Ribonuclease PH [Kocuria palustris PEL]
Length = 258
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGS 67
G R DGR ELR I G +Q++GSA IE G T+VL A+V P + ++ G
Sbjct: 16 GPRADGRAVDELRPITITRGWSAQAEGSALIEFGQTRVLCTASVTEGVP---RWLRGEGR 72
Query: 68 VLINFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +Y+M +TG R R R +T EIS + +++ + I + + + +
Sbjct: 73 GWVTAEYAMLPRATGTRSQRESVKGRIGGRTHEISRLIGRSLRSVIDLKALGENTVVLDC 132
Query: 124 EVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDIS 172
+VLQADGG A + A +AL +A G P+ + V A S + P++D+
Sbjct: 133 DVLQADGGTRTASITGAYVALSEAMGWARRQGLVTGDPLTDSVAAVSVGIIDGVPMLDLP 192
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
++E+ ++ V V V ++ D L +LD A+ GCAD+ I
Sbjct: 193 YVEDVRAETDMNVVVTGSGTFVEVQGTAEGAPFDRSELDGLLDLAVAGCADLARI 247
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGS 67
GG R DGR ++LR C ++ GSA QG+T VLAAVYGP+P R S
Sbjct: 3 GGSRADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKAS 62
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + ++ ER E + L++ + + + VHP + + ++V+
Sbjct: 63 IEVVWKPKTGQIGRQER-----------EYEMTLKRTLQSICLLTVHPNTTTSVVLQVVG 111
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVA-CSASLAGDTPLVDISHLEE 176
DG +NA+ AL AGIPM+ VA C + ++D S EE
Sbjct: 112 DDGSLLPCAINASCAALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEE 161
>gi|163783654|ref|ZP_02178642.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
gi|159881059|gb|EDP74575.1| RNase PH [Hydrogenivirga sp. 128-5-R1-1]
Length = 255
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R DGRR ELR ++ S +GS IE G+TKV+ A+V P +K G
Sbjct: 1 MRKDGRREDELRPVKIVRDFLSHPEGSCLIEFGDTKVICTASVTESVP---PFLKGKGQG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAI-MSEVHPRSQIDIFV 123
I +YSM +T R R K T EI + +A+ A+ ++++ R+ + +
Sbjct: 58 WITAEYSMLPRATHTRNIRESVQGKISGRTHEIQRMIGRAMRTAVDLTKLGERT-LWVDC 116
Query: 124 EVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDIS 172
+V+QADGG A + A +A+ DA +P++++V A S + PL+D++
Sbjct: 117 DVIQADGGTRTASITGAFVAVADALIKLYEDGIIQSVPIKDFVAAVSVGIVNGKPLLDLN 176
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADI 222
E+++ ++ V V + ++ D L +LD ALKG +++
Sbjct: 177 FEEDSMAQVDMNVVGTGEGRFSEVQSMGEEYTFSRDELDNLLDLALKGISEL 228
>gi|358056451|dbj|GAA97625.1| hypothetical protein E5Q_04303 [Mixia osmundae IAM 14324]
Length = 260
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 17/231 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR +LR + G+ ++GS YIE G+TK+L AVYGP + + +
Sbjct: 35 VRSDGRAWSDLRSHFVKTGIVQDANGSCYIEAGSTKLLCAVYGPHASAINTTPA-AKLEV 93
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+++ + F G R+ +G S +S + QA+ +++ + PRS I + V +LQ DG
Sbjct: 94 EVKFTPSTFP-GSRRAPGKGTESAS-LSADIHQALLPSLLLDRIPRSTISVHVTLLQWDG 151
Query: 131 --GNFCACVNAATLALIDAGIPMREYVV-ACS-------ASLAGDTPLVDISHLEETLGG 180
+ A + AA+LAL A I MR V+ C+ AS+ P D E L
Sbjct: 152 PLTDISAGITAASLALASAKIEMRGLVIGTCAVIRQTEDASIVAIDPTAD----EVDLSV 207
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
+++A +P G ++++E+S K L + + ++ + A +H+I T+++
Sbjct: 208 AQVSMACMPALGTLSLLEVSGKASLTQIDQAIERMTEASARMHSISATSLQ 258
>gi|403169909|ref|XP_003329338.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168474|gb|EFP84919.2| hypothetical protein PGTG_10390 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 291
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 18/235 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSVLI 70
R DGR + R I ++GV SQ++GS YIE GN+KV+ AVYGP+P + ++I
Sbjct: 61 RADGRIHSDSRPICIKVGVISQANGSCYIESGNSKVICAVYGPKPRSSLSNSSSLSPLVI 120
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ---IDIFVEVLQ 127
+ +++ + G G +T+ + Q A+M + P S +++ + VL+
Sbjct: 121 SLRFAPFCMAGGRMAPTALGGVETT-----VSQLTQQALMPSLLPMSDSSIVEVHINVLE 175
Query: 128 ADGG-NFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
D + CV A+++AL AGIP V+ + +L+ + +D + E +A
Sbjct: 176 WDSPLSPGPCVLASSIALASAGIPTVGLVIPSTLALSKEL-YLDPTATEAESASAIFDLA 234
Query: 187 ALPLSGKVAVMEL-------SQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
++P G V + S + D R LD IH + A+K HL
Sbjct: 235 SIPAMGTVTHVGFRSTTDWKSAPIGNDTFDRCLDLCKSNAELIHGLAAAALKDHL 289
>gi|410910298|ref|XP_003968627.1| PREDICTED: exosome complex component RRP46-like [Takifugu rubripes]
Length = 219
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGS+ QG+T VLA VYGP V+ +K I ++ + Q + +
Sbjct: 11 LRDFSCEQSLLSRPDGSSSFMQGDTSVLAGVYGPAEVKVSKEIYDRATLEVLIQPKVGLP 70
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
S ER ++ + R+T E SL L +HPRS + + ++VL DG +NA
Sbjct: 71 SVKER-SQEQNVRETCEASLLL----------SLHPRSSLTLVLQVLHDDGSLLSCFLNA 119
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PM + ++A D ++
Sbjct: 120 ACMALMDAGLPMSCLFCGVTCAIAVDGEII 149
>gi|330505631|ref|YP_004382500.1| ribonuclease PH [Pseudomonas mendocina NK-01]
gi|328919917|gb|AEB60748.1| ribonuclease PH [Pseudomonas mendocina NK-01]
Length = 239
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V ++ D +L A KG +I + A+
Sbjct: 182 SAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQKAAL 237
>gi|398870380|ref|ZP_10625718.1| ribonuclease PH [Pseudomonas sp. GM74]
gi|398913336|ref|ZP_10656394.1| ribonuclease PH [Pseudomonas sp. GM49]
gi|398930393|ref|ZP_10664542.1| ribonuclease PH [Pseudomonas sp. GM48]
gi|398165373|gb|EJM53491.1| ribonuclease PH [Pseudomonas sp. GM48]
gi|398180846|gb|EJM68423.1| ribonuclease PH [Pseudomonas sp. GM49]
gi|398208689|gb|EJM95399.1| ribonuclease PH [Pseudomonas sp. GM74]
Length = 240
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 23/240 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR +LR IR ++GS +E G+TKV+ V P + +K G +
Sbjct: 2 IRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV-SVEPGVPRFLKGQGQGWL 60
Query: 71 NFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--E 124
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +
Sbjct: 61 TAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDIS 172
V+QADGG A + + +ALIDA G P+++ + A S + P++D+
Sbjct: 119 VIQADGGTRTASITGSMVALIDALKVIKKRGGLKGGDPVKQMIAAVSVGMYKGEPVLDLD 178
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 179 YLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>gi|403415678|emb|CCM02378.1| predicted protein [Fibroporia radiculosa]
Length = 1310
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G GR ++R I C + SQ++GSAYIE TK+ AVYGPR + +G
Sbjct: 30 WSAGKPRQGRASGDIRPI-C---LISQANGSAYIETERTKIACAVYGPRQSKTTVYNENG 85
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+N + A FS R+ P D + I++Q+ QA+ ++ E+ P+S IDIF+ V+
Sbjct: 86 R--LNVEVKFAPFSCTRRRA-PIRDAEDRSIAMQIHQAILPSVRLELLPKSTIDIFITVI 142
Query: 127 QADGGNFC--ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLT 184
+ DG C + +A+ AL DAGI M V++C+AS+ +D + E +L
Sbjct: 143 ENDGIEGCIASGSLSASAALADAGIEMLGLVISCTASVICGEIWLDPTEEEARAAAGSLI 202
Query: 185 VAALPLSGKV 194
++ +P G +
Sbjct: 203 MSGIPALGTI 212
>gi|15600527|ref|NP_254021.1| ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|116053481|ref|YP_793808.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894437|ref|YP_002443307.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|254237972|ref|ZP_04931295.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|254243780|ref|ZP_04937102.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|296392194|ref|ZP_06881669.1| ribonuclease PH [Pseudomonas aeruginosa PAb1]
gi|313106761|ref|ZP_07792977.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
gi|355643650|ref|ZP_09053472.1| ribonuclease PH [Pseudomonas sp. 2_1_26]
gi|386061511|ref|YP_005978033.1| ribonuclease PH [Pseudomonas aeruginosa M18]
gi|386068990|ref|YP_005984294.1| ribonuclease PH [Pseudomonas aeruginosa NCGM2.S1]
gi|392987057|ref|YP_006485644.1| ribonuclease PH [Pseudomonas aeruginosa DK2]
gi|416854489|ref|ZP_11910924.1| ribonuclease PH [Pseudomonas aeruginosa 138244]
gi|418587317|ref|ZP_13151349.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P1]
gi|418591205|ref|ZP_13155105.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P2]
gi|419754038|ref|ZP_14280432.1| ribonuclease PH [Pseudomonas aeruginosa PADK2_CF510]
gi|420142486|ref|ZP_14650083.1| ribonuclease PH [Pseudomonas aeruginosa CIG1]
gi|421156872|ref|ZP_15616309.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 14886]
gi|421163879|ref|ZP_15622554.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 25324]
gi|421171287|ref|ZP_15629159.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 700888]
gi|421177596|ref|ZP_15635245.1| ribonuclease PH [Pseudomonas aeruginosa CI27]
gi|421183423|ref|ZP_15640883.1| ribonuclease PH [Pseudomonas aeruginosa E2]
gi|421519905|ref|ZP_15966576.1| ribonuclease PH [Pseudomonas aeruginosa PAO579]
gi|424943864|ref|ZP_18359627.1| ribonuclease PH [Pseudomonas aeruginosa NCMG1179]
gi|451987108|ref|ZP_21935269.1| Ribonuclease PH [Pseudomonas aeruginosa 18A]
gi|12230959|sp|P50597.2|RNPH_PSEAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|122256498|sp|Q02E28.1|RNPH_PSEAB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226736925|sp|B7V5M5.1|RNPH_PSEA8 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|46015434|pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa In Complex With Phosphate
gi|9951653|gb|AAG08719.1|AE004946_3 ribonuclease PH [Pseudomonas aeruginosa PAO1]
gi|115588702|gb|ABJ14717.1| ribonuclease PH [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169903|gb|EAZ55414.1| ribonuclease PH [Pseudomonas aeruginosa C3719]
gi|126197158|gb|EAZ61221.1| ribonuclease PH [Pseudomonas aeruginosa 2192]
gi|218774666|emb|CAW30483.1| ribonuclease PH [Pseudomonas aeruginosa LESB58]
gi|310879479|gb|EFQ38073.1| ribonuclease PH [Pseudomonas aeruginosa 39016]
gi|334844053|gb|EGM22633.1| ribonuclease PH [Pseudomonas aeruginosa 138244]
gi|346060310|dbj|GAA20193.1| ribonuclease PH [Pseudomonas aeruginosa NCMG1179]
gi|347307817|gb|AEO77931.1| ribonuclease PH [Pseudomonas aeruginosa M18]
gi|348037549|dbj|BAK92909.1| ribonuclease PH [Pseudomonas aeruginosa NCGM2.S1]
gi|354829600|gb|EHF13664.1| ribonuclease PH [Pseudomonas sp. 2_1_26]
gi|375042070|gb|EHS34737.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P1]
gi|375049986|gb|EHS42473.1| ribonuclease PH [Pseudomonas aeruginosa MPAO1/P2]
gi|384399529|gb|EIE45898.1| ribonuclease PH [Pseudomonas aeruginosa PADK2_CF510]
gi|392322562|gb|AFM67942.1| ribonuclease PH [Pseudomonas aeruginosa DK2]
gi|403244746|gb|EJY58605.1| ribonuclease PH [Pseudomonas aeruginosa CIG1]
gi|404345824|gb|EJZ72176.1| ribonuclease PH [Pseudomonas aeruginosa PAO579]
gi|404518512|gb|EKA29342.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 14886]
gi|404520607|gb|EKA31272.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 700888]
gi|404527152|gb|EKA37328.1| ribonuclease PH [Pseudomonas aeruginosa ATCC 25324]
gi|404529285|gb|EKA39333.1| ribonuclease PH [Pseudomonas aeruginosa CI27]
gi|404540331|gb|EKA49744.1| ribonuclease PH [Pseudomonas aeruginosa E2]
gi|451755241|emb|CCQ87792.1| Ribonuclease PH [Pseudomonas aeruginosa 18A]
gi|453043174|gb|EME90907.1| ribonuclease PH [Pseudomonas aeruginosa PA21_ST175]
Length = 239
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|386772722|ref|ZP_10095100.1| RNAse PH [Brachybacterium paraconglomeratum LC44]
Length = 252
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 110/245 (44%), Gaps = 22/245 (8%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN 59
M TE G R DGR +LR++R G Q++GSA IE G T+VL A + R
Sbjct: 1 MSPQTETFVGDRVDGRTPDQLREVRITRGWQDQAEGSALIEFGRTRVLCTASFTEGVPRW 60
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHP 115
K K GS + +Y+M +T R R K T EIS + +++ A I +
Sbjct: 61 K--KGSGSGWVTAEYAMLPRATNTRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALG 118
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDA--------GIP-----MREYVVACSASL 162
+ I + +VLQADGG A + A +AL DA +P + + V A S +
Sbjct: 119 ENTIQLDCDVLQADGGTRTAAITGAYVALADAVSWAKRHTDLPAASEVLTDTVSAISVGI 178
Query: 163 AGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCA 220
PL+D+ + E+ ++ V G V V ++ D L +LD A GCA
Sbjct: 179 VDGRPLLDLEYREDVTADTDMNVVVTGTGGFVEVQGTAEGTPFDRAELGTLLDLATTGCA 238
Query: 221 DIHAI 225
+ I
Sbjct: 239 QLAEI 243
>gi|350567792|ref|ZP_08936198.1| tRNA nucleotidyltransferase [Propionibacterium avidum ATCC 25577]
gi|348662044|gb|EGY78713.1| tRNA nucleotidyltransferase [Propionibacterium avidum ATCC 25577]
Length = 244
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 22/232 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G +Q++GS + G T VL A+V P K G
Sbjct: 6 RIDGRRLDQLRDVRIERGWLTQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 62
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKIGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 126 LQADGGNFCACVNAATLALIDAGIPMRE-----------YVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL+DA +RE V A S + G TP++D+++
Sbjct: 123 LQADGGTRTASITGAYVALVDAVNWLRERGGLVWEPITGSVQAISVGVVGGTPMLDLAYE 182
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHA 224
E++ ++ V G V + ++ + L +LD A GCA + A
Sbjct: 183 EDSRADTDMNVVMSGDGGFVEIQGTAEGAPFNRGLLNELLDLAAGGCASLKA 234
>gi|257069148|ref|YP_003155403.1| RNAse PH [Brachybacterium faecium DSM 4810]
gi|256559966|gb|ACU85813.1| RNAse PH [Brachybacterium faecium DSM 4810]
Length = 252
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 107/233 (45%), Gaps = 22/233 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
G R DGR +LR++R G ++GSA IE G T+VL AA + R K + GS
Sbjct: 10 GDRIDGRTPDQLREVRITRGWLDHAEGSALIEFGRTRVLCAASFTAGVPRWK--QGSGSG 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y+M +T R R K T EIS + +++ A I + + I + +
Sbjct: 68 WVTAEYAMLPRATNSRSPRESVKGKIGGRTHEISRLIGRSLRAVIDLDALGENTIQLDCD 127
Query: 125 VLQADGGNFCACVNAATLALIDA--------GIP-----MREYVVACSASLAGDTPLVDI 171
VLQADGG A + A +AL DA +P + + V A S + D PL+D+
Sbjct: 128 VLQADGGTRTAAITGAYVALADAISWGKQHTALPAAAQVLTDSVSAISVGIVDDRPLLDL 187
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADI 222
+ E+ G ++ V V V ++ D L +LD A GCA +
Sbjct: 188 EYREDVAAGTDMNVVVTGSGSFVEVQGTAEGAPFDRAELGALLDLATGGCAQL 240
>gi|312963858|ref|ZP_07778329.1| ribonuclease PH [Pseudomonas fluorescens WH6]
gi|440737427|ref|ZP_20916993.1| ribonuclease PH [Pseudomonas fluorescens BRIP34879]
gi|447919042|ref|YP_007399610.1| ribonuclease PH [Pseudomonas poae RE*1-1-14]
gi|311281893|gb|EFQ60503.1| ribonuclease PH [Pseudomonas fluorescens WH6]
gi|440382129|gb|ELQ18640.1| ribonuclease PH [Pseudomonas fluorescens BRIP34879]
gi|445202905|gb|AGE28114.1| ribonuclease PH [Pseudomonas poae RE*1-1-14]
Length = 240
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I A+ + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQNAAL 238
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR + C L S DGSA + QGNT V+A +YGP + + + ++ + YS
Sbjct: 12 LRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKM-IYDKASVEVSYS----- 65
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
K + D + +E + +++ AAI+ HP + I I V+ L+ GG +NAA
Sbjct: 66 --PIKGPAKVDDRMTE--MYIKETCEAAIIVTFHPATAICINVQELEDSGGILACTINAA 121
Query: 141 TLALIDAGIPMREYVVACSASLAGDTPLV----DISHLEE 176
LALI+AGIPM+ + A + + T + D + L+E
Sbjct: 122 CLALINAGIPMKFTIAAVNCMIQEGTENIIVDPDTTQLQE 161
>gi|398953564|ref|ZP_10675428.1| ribonuclease PH [Pseudomonas sp. GM33]
gi|426412227|ref|YP_007032326.1| ribonuclease PH [Pseudomonas sp. UW4]
gi|398153739|gb|EJM42233.1| ribonuclease PH [Pseudomonas sp. GM33]
gi|426270444|gb|AFY22521.1| ribonuclease PH [Pseudomonas sp. UW4]
Length = 240
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 23/240 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R GR +LR IR ++GS +E G+TKV+ V P + +K G +
Sbjct: 2 IRPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV-SVEPGVPRFLKGQGQGWL 60
Query: 71 NFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--E 124
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +
Sbjct: 61 TAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMTKLGDVTLYVDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDIS 172
V+QADGG A + + +ALIDA G P+++ + A S + P++D+
Sbjct: 119 VIQADGGTRTASITGSMVALIDALKVIKKRGGLKGGDPVKQMIAAVSVGMYKGEPVLDLD 178
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 179 YLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>gi|66475762|ref|XP_627697.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|32398930|emb|CAD98395.1| ribonuclease PH-like protein, possible [Cryptosporidium parvum]
gi|46229123|gb|EAK89972.1| archeo-eukaryotice exosomal RNAse PH [Cryptosporidium parvum Iowa
II]
gi|323509005|dbj|BAJ77395.1| cgd6_3540 [Cryptosporidium parvum]
Length = 303
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
++++E +RND R+ ELR I R GV +DGSAY GNTKVL +YGP +
Sbjct: 36 FNIISENKVLIRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQN 95
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEI-------SLQLRQAVSAAIMSEV 113
I+ SV + +Y++ F + + + + EI S+ L + +S+ I E
Sbjct: 96 PIEDGLSVSV--EYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEK 153
Query: 114 HPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPM 151
+ RS ID + ++ DG F A ++AA L+L +A I +
Sbjct: 154 YKRSSIDCYFYIIDDDGSAFSAAISAACLSLCNAKIEI 191
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGS 67
GG R DGR ++LR C ++ GSA QG+T VLAAVYGP+P R S
Sbjct: 4 GGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKAS 63
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + ++ ER E + L++ + + + VHP + + ++V+
Sbjct: 64 IEVVWKPKTGQIGRQER-----------EYEMTLKRTLQSICLLTVHPNTTTSVVLQVVG 112
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEE 176
DG +NA+ AL AGIPM+ VA S + + ++D S EE
Sbjct: 113 DDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEE 162
>gi|152984751|ref|YP_001351426.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
gi|166228301|sp|A6VEE1.1|RNPH_PSEA7 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|150959909|gb|ABR81934.1| ribonuclease PH [Pseudomonas aeruginosa PA7]
Length = 239
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|289549062|ref|YP_003474050.1| ribonuclease PH [Thermocrinis albus DSM 14484]
gi|289182679|gb|ADC89923.1| ribonuclease PH [Thermocrinis albus DSM 14484]
Length = 255
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 25/262 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR+ +ELRKIR +GS +E G+TKV+ V V +K G I
Sbjct: 1 MRSDGRKPNELRKIRITRDYLKHPEGSVLVEFGDTKVVCTVSVQESV-PPFLKGKGQGWI 59
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEV 125
+YSM +T R R R +T EI + +A+ A+ +++V R+ I +V
Sbjct: 60 TAEYSMLPRATQTRNIRESVQGRVGGRTHEIQRMIGRAMRTALDLTKVGERT-FWIDCDV 118
Query: 126 LQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL DA I P++++V A S + D L+D++
Sbjct: 119 LQADGGTRTAAITGAFVALADAVIKLYTEGVLTTTPIKDFVAAVSVGIVDDQILLDLNFE 178
Query: 175 EETLGGPNLTVAAL--PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
E++ ++ V A + ++ M + + ++L+ AL G + +++
Sbjct: 179 EDSRAKVDMNVVATGSGMISEIHAMGEEHTFSREDMDKMLNLALAGIRQL-----VELQR 233
Query: 233 HLIKVAGARGLGRKFQLGQLTG 254
+V G L + + L G
Sbjct: 234 SFFEVRGGLWLRKNVREASLEG 255
>gi|398876627|ref|ZP_10631781.1| ribonuclease PH [Pseudomonas sp. GM67]
gi|398884804|ref|ZP_10639730.1| ribonuclease PH [Pseudomonas sp. GM60]
gi|398193526|gb|EJM80626.1| ribonuclease PH [Pseudomonas sp. GM60]
gi|398204120|gb|EJM90929.1| ribonuclease PH [Pseudomonas sp. GM67]
Length = 240
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRASLDMSKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELTAMLELAKKGMTEIFELQKAAL 238
>gi|311113412|ref|YP_003984634.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
gi|310944906|gb|ADP41200.1| tRNA nucleotidyltransferase [Rothia dentocariosa ATCC 17931]
Length = 245
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 20/233 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +ELR I G +Q++GSA +E G+T+VL V + +K G +
Sbjct: 6 RADGRALNELRPITITRGWSNQAEGSALVEFGDTRVLCTASFTEGV-PRWLKGEGKGWVT 64
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +TG R +R K T EIS + +++ A I + I + +VLQ
Sbjct: 65 AEYAMLPRATGTRSSRESVKGKIGGRTHEISRLIGRSLRAVIDMNALGENTIVLDCDVLQ 124
Query: 128 ADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL D + P+++ V A S + TP++D+ +
Sbjct: 125 ADGGTRTASITGAYVALADSIAWAQRNGLLSPSAKPLKDSVSAISVGIIDGTPMLDLPYT 184
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
E+ ++ V V V ++ D L +LD AL+G A++ I
Sbjct: 185 EDVRAETDMNVVVTGSGKFVEVQGTAEGAPFDRNELNALLDLALEGTAELARI 237
>gi|363746058|ref|XP_003643513.1| PREDICTED: exosome complex component RRP46-like, partial [Gallus
gallus]
Length = 173
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMA 77
G LR C G+ S+ DGSA QG+T VLA +YGP V+ G+
Sbjct: 9 GCSLRPFSCEQGLLSRPDGSATFVQGDTSVLAGLYGPAEVKGSRESPDGA---------- 58
Query: 78 VFSTGERKTRPR-GDRKTSEISLQ--LRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFC 134
T E RP+ G +E S + LR+ A ++ +HPR+ I + ++VL G
Sbjct: 59 ---TVEVLLRPKVGLPGVAERSREQLLRRTFEAVLLGSLHPRTSITVVLQVLSDAGSLLA 115
Query: 135 ACVNAATLALIDAGIPMREYV--VACSASLAGD 165
C+NAA + L+DAG+P+ V C+ GD
Sbjct: 116 CCLNAACMGLLDAGLPLSSLFCGVTCALDPHGD 148
>gi|283458297|ref|YP_003362916.1| RNase PH [Rothia mucilaginosa DY-18]
gi|422325020|ref|ZP_16406057.1| ribonuclease PH [Rothia mucilaginosa M508]
gi|283134331|dbj|BAI65096.1| RNase PH [Rothia mucilaginosa DY-18]
gi|353343729|gb|EHB88044.1| ribonuclease PH [Rothia mucilaginosa M508]
Length = 243
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 22/234 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +ELR I G ++GSA IE GNT+VL V + +K G +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGV-PRWLKGEGKGWVT 63
Query: 72 FQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +T R +R R +T EIS + +++ A I + + I + +VLQ
Sbjct: 64 AEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQ 123
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL DA P+ + V A S + TP++D+ +
Sbjct: 124 ADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYT 183
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAI 225
E+ ++ V + SGK ++ + + D L +LD AL+G A++ I
Sbjct: 184 EDVRAETDMNV-VVTGSGKFVEVQGTAEGAPFDRDELNSLLDLALEGTAELAQI 236
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 33/239 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-KSIKVHGSVLI 70
R +GR +LR + + +++DGSA Q T VLAAVYGP V + + K+ S
Sbjct: 9 RLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILKS--- 65
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
Y F+ T K L ++ AV + I++ +HPR+Q+ + ++V DG
Sbjct: 66 ---YVEVTFTPALGNTTYLDKEK----ELLVKNAVESVILTTLHPRTQVSVIIQVYSDDG 118
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET-----LGGPNLT- 184
+NAA LAL+DAGI M L G L++ E+ + P+L
Sbjct: 119 SIVSCSINAACLALLDAGIEMN--------GLIGSITLMNEDDDEDNNKCLMIVDPDLNE 170
Query: 185 ------VAALPLSGKVAVMELSQKLHLDHLPRVLDC--ALKGCADIHAILDTAIKQHLI 235
+A S + +S+ + + +C A +GC I A + A+K ++
Sbjct: 171 ENNSKAMAIFAFSSNSNNIVMSKTIGTLTEDQYFECLKAARGCDSIIAYMKLAVKNRIM 229
>gi|255326296|ref|ZP_05367382.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
gi|255296750|gb|EET76081.1| tRNA nucleotidyltransferase [Rothia mucilaginosa ATCC 25296]
Length = 243
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 22/234 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +ELR I G ++GSA IE GNT+VL V + +K G +
Sbjct: 5 REDGRALNELRPITITRGWSRNAEGSALIEFGNTRVLCTASFTEGV-PRWLKGEGKGWVT 63
Query: 72 FQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +T R +R R +T EIS + +++ A I + + I + +VLQ
Sbjct: 64 AEYAMLPRATNTRSSRESLKGRVGGRTHEISRLIGRSLRAVINMDELGENTIVLDCDVLQ 123
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL DA P+ + V A S + TP++D+ +
Sbjct: 124 ADGGTRTASITGAYVALADAISWAKEQKILPAKANPLIDSVSAISVGIIDGTPMLDLPYT 183
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAI 225
E+ ++ V + SGK ++ + + D L +LD AL+G A++ I
Sbjct: 184 EDVRAETDMNV-VVTGSGKFVEVQGTAEGVPFDRDELNSLLDLALEGTAELAQI 236
>gi|330812597|ref|YP_004357059.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|423092939|ref|ZP_17080735.1| ribonuclease PH [Pseudomonas fluorescens Q2-87]
gi|423700088|ref|ZP_17674578.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens Q8r1-96]
gi|327380705|gb|AEA72055.1| ribonuclease PH [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|387996802|gb|EIK58132.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens Q8r1-96]
gi|397882463|gb|EJK98950.1| ribonuclease PH [Pseudomonas fluorescens Q2-87]
Length = 240
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>gi|150021487|ref|YP_001306841.1| polynucleotide phosphorylase/polyadenylase [Thermosipho
melanesiensis BI429]
gi|187611329|sp|A6LNF5.1|PNP_THEM4 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|149794008|gb|ABR31456.1| Polyribonucleotide nucleotidyltransferase [Thermosipho
melanesiensis BI429]
Length = 699
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
G+R DGR E+R I C +GV ++ GSA +G T+ L V P+ + +I G
Sbjct: 320 GIRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEG 379
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FS GE K R G R+ L R + A E P + + E+
Sbjct: 380 TKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVAPDEEDFPYV-VRVVSEI 438
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++ +V + L D L DI LE+ G
Sbjct: 439 LESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEVVLTDIQGLEDHWGDM 498
Query: 182 NLTVA 186
+ VA
Sbjct: 499 DFKVA 503
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 15/190 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR+ ELR ++C L + + DGSA G++ V+AAVYGPR V K H +
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREK-HDRSTVE 63
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH--PRSQIDIFVEVLQAD 129
+ A + + + + L + V A+ S +H PRS I + ++ L D
Sbjct: 64 VAWHSA-----------PDNEQGAALQSHLTEFVVNALAS-IHDFPRSAIRVVIQELNND 111
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG +NA LAL+DAGI + A S ++ ++D + +E+ + A
Sbjct: 112 GGMLACAINATCLALMDAGISLTAMFAAASCAVVDGQLILDPTLIEQNKANAVVVTGACK 171
Query: 190 LSGKVAVMEL 199
+ KV E
Sbjct: 172 QASKVNAAEF 181
>gi|407367315|ref|ZP_11113847.1| ribonuclease PH [Pseudomonas mandelii JR-1]
Length = 240
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRASLDMSKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMTEIFELQKAAL 238
>gi|398993181|ref|ZP_10696135.1| ribonuclease PH [Pseudomonas sp. GM21]
gi|398135368|gb|EJM24488.1| ribonuclease PH [Pseudomonas sp. GM21]
Length = 240
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRASLDMSKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L+ A KG ++I + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMSEIFDLQKAAL 238
>gi|443689973|gb|ELT92240.1| hypothetical protein CAPTEDRAFT_152902 [Capitella teleta]
Length = 218
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQ 73
G +LRK+ L SQ DGSA + QG + LAAVYGPR VR +K + ++ I ++
Sbjct: 6 GSEQCQLRKMLGELSRLSQPDGSAMLCQGTSTSLAAVYGPRDVRISKELVDRATMDIVYK 65
Query: 74 YSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
+ P D + E +R I+ + HPR+ ID+ V+ +Q G
Sbjct: 66 PKTGL---------PGNDARFLE--RIIRSTCENMILVKQHPRTSIDVIVQEMQDSGSYL 114
Query: 134 CACVNAATLALIDAGIPMREYVVA 157
C+NA TLAL+DA +P++ V A
Sbjct: 115 SCCLNAVTLALLDACLPLKYTVAA 138
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 14/160 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR + C L S DGSA + QGNT V+A +YGP + + + ++ + YS
Sbjct: 12 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKM-IYDKASVEVSYS----- 65
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
K + D + +E + +++ AAI+ HP + I I ++ L+ GG +NAA
Sbjct: 66 --PIKGPAKVDDRMTE--MYIKETCEAAIIVTFHPATAICINIQELEDSGGILACTINAA 121
Query: 141 TLALIDAGIPMREYVVACSASLAGDTPLV----DISHLEE 176
LALI+AGIPM+ + A + + T + D + L+E
Sbjct: 122 CLALINAGIPMKFTIAAVNCMIQEGTENIVLDPDTTQLQE 161
>gi|149038199|gb|EDL92559.1| rCG51656 [Rattus norvegicus]
Length = 252
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 34/224 (15%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P+G + E+ L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
G A + AA LAL DAG+ M + VV C SL P LTVA
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLT-----------------PGLTVAL 195
Query: 188 LPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 196 MPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCL 239
>gi|395205396|ref|ZP_10396027.1| tRNA nucleotidyltransferase [Propionibacterium humerusii P08]
gi|422441184|ref|ZP_16517994.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
gi|422472632|ref|ZP_16549120.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
gi|422574559|ref|ZP_16650112.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
gi|313835876|gb|EFS73590.1| ribonuclease PH [Propionibacterium acnes HL037PA2]
gi|314927124|gb|EFS90955.1| ribonuclease PH [Propionibacterium acnes HL044PA1]
gi|314970767|gb|EFT14865.1| ribonuclease PH [Propionibacterium acnes HL037PA3]
gi|328906032|gb|EGG25807.1| tRNA nucleotidyltransferase [Propionibacterium humerusii P08]
Length = 252
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 14 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 70
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R RG +T EIS + +++ A I + + I + +V
Sbjct: 71 VTAEYEMLPRATNERSGRESRRGKIGGRTHEISRLVGRSLRAVIDDKALGENTIILDCDV 130
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL+DA G P+ V A S + G P++D+++
Sbjct: 131 LQADGGTRTASITGAYVALVDAVNWLRKRGGLVGEPITGSVQAISVGVVGGVPMLDLAYE 190
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + D L +LD A GC +
Sbjct: 191 EDSRADTDMNVV---MSGSGDFVEIQGTAEGAPFNRDLLNELLDLAAGGCVTLK 241
>gi|164660188|ref|XP_001731217.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
gi|159105117|gb|EDP44003.1| hypothetical protein MGL_1400 [Malassezia globosa CBS 7966]
Length = 253
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ E R + + G+ + GS +E G+TK++ +V+GPR VR + G +
Sbjct: 20 VRPDGRKAEEPRPLYLQTGIIPSASGSTLLESGHTKIVCSVHGPRQVRGRHYA--GKAEV 77
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
N Q+ MA FS ER R D + + ++QA+ AI ++ P+S ID+ + VL +D
Sbjct: 78 NVQFEMAPFSEKER--RSSRDTEAPVPAALIQQALLPAIRLDLLPKSSIDVHITVLDSDT 135
Query: 131 ---GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP---------LVDISHLEETL 178
G AA+ AL +AG+ M V +A+ P LVD +H E
Sbjct: 136 SMLGCAAMGATAASAALAEAGVQMLGLVTGATATAISTLPSTNKAQQLWLVDPTHREYAD 195
Query: 179 GGPNLTVAALPLSG 192
+L + LP G
Sbjct: 196 SHSHLMICGLPALG 209
>gi|388466731|ref|ZP_10140941.1| tRNA nucleotidyltransferase [Pseudomonas synxantha BG33R]
gi|388010311|gb|EIK71498.1| tRNA nucleotidyltransferase [Pseudomonas synxantha BG33R]
Length = 240
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I A+ A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFALQTAAL 238
>gi|399522941|ref|ZP_10763603.1| ribonuclease PH [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109310|emb|CCH40164.1| ribonuclease PH [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 239
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVVCTVSVESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V ++ D +L A KG +I + A+
Sbjct: 182 SAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQQAAL 237
>gi|49082078|gb|AAT50439.1| PA5334, partial [synthetic construct]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+T+V+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTRVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGSRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>gi|399004860|ref|ZP_10707464.1| ribonuclease PH [Pseudomonas sp. GM17]
gi|425902339|ref|ZP_18878930.1| tRNA nucleotidyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397882058|gb|EJK98546.1| tRNA nucleotidyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398128228|gb|EJM17621.1| ribonuclease PH [Pseudomonas sp. GM17]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMTKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPIKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAKKGMSEIFELQQAAL 238
>gi|350538705|ref|NP_001232110.1| putative exosome component 5 [Taeniopygia guttata]
gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINF 72
DGR LR+ C LG+ S+ DGSA QG+T VLA +YGP + +K + ++ +
Sbjct: 12 DGR--CRLRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLL 69
Query: 73 QYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN 132
+ + + ER + E LQ Q A ++ +HPR+ I + ++VL G
Sbjct: 70 RPKVGLPGVLER---------SREQLLQ--QTCEAVVLGVLHPRTAISLVLQVLSDAGSL 118
Query: 133 FCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVA 186
C+NAA +AL+DAG+P+ + +L D L+D + +E LT A
Sbjct: 119 LSCCLNAACMALLDAGLPLSALFCGVTCALQPDGAILLDPTARQEQEARAVLTFA 173
>gi|417942031|ref|ZP_12585309.1| Ribonuclease PH (RNase PH) [Bifidobacterium breve CECT 7263]
gi|376167665|gb|EHS86496.1| Ribonuclease PH (RNase PH) [Bifidobacterium breve CECT 7263]
Length = 258
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 28/231 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 75
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y+M +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 76 VTAEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKNHHIKSADKVLKDYVSAVSVGVINGTPMLDLP 195
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
++E++ ++ VA ++G +E+ + + L +LD A KG
Sbjct: 196 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKG 243
>gi|291456091|ref|ZP_06595481.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|384196574|ref|YP_005582318.1| tRNA nucleotidyltransferase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|291382500|gb|EFE90018.1| tRNA nucleotidyltransferase [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|333109640|gb|AEF26656.1| tRNA nucleotidyltransferase [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478648|gb|ABE95102.1| Ribonuclease PH [Bifidobacterium breve UCC2003]
Length = 258
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 28/231 (12%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 18 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 75
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y+M +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 76 VTAEYAMLPRATSERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 135
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 136 LQADGGTRTASVTGAYVALVDAVNWAEKHHHIKSADKVLKDYVSAVSVGVINGTPMLDLP 195
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
++E++ ++ VA ++G +E+ + + L +LD A KG
Sbjct: 196 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKG 243
>gi|357017435|gb|AET50746.1| hypothetical protein [Eimeria tenella]
Length = 320
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 112/278 (40%), Gaps = 68/278 (24%)
Query: 10 GLRNDGRRGHELRKIRCRLGV----------------------------FSQSDGSAYIE 41
G R DGR +E R++RCR V + DG A +
Sbjct: 11 GFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCDGRAVVS 70
Query: 42 QGNTKVLAAVYGPRPVRNKSIKVHGSVLI-------NFQYSMAVFSTGER---------- 84
G TKV+A VYGP+P N S S N +M + G++
Sbjct: 71 LGCTKVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLARGELAVP 130
Query: 85 --------------KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+TR R +EI+ +R A I+ ++ +++I I + VL DG
Sbjct: 131 VSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITISILVLADDG 190
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP---------LVDISHLEETLGGP 181
A + AA+LAL DAG+ MR+ + +C+ L LVD + E GGP
Sbjct: 191 SILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTSDETRSGGP 250
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGC 219
LT+ + + ++L+ ++ ++ + L+GC
Sbjct: 251 CLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGC 288
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 20/187 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVH-GSVLI 70
R DGR ++LR + + ++ GSA QG TKVLAAVYGP+ K+ S+ +
Sbjct: 5 RPDGRTPNQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + ++P + + V+V+ DG
Sbjct: 65 IWKPKTGQIGKMEK-----------EYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVA--CSASLAGDTPLVDISHLEETLGG------PN 182
+NAA AL+DAGIP++ VA CS + +G L EE + PN
Sbjct: 114 ALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFANLVFPN 173
Query: 183 LTVAALP 189
V+ LP
Sbjct: 174 TIVSVLP 180
>gi|398860393|ref|ZP_10616041.1| ribonuclease PH [Pseudomonas sp. GM79]
gi|398900704|ref|ZP_10649691.1| ribonuclease PH [Pseudomonas sp. GM50]
gi|398180533|gb|EJM68111.1| ribonuclease PH [Pseudomonas sp. GM50]
gi|398234670|gb|EJN20531.1| ribonuclease PH [Pseudomonas sp. GM79]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMTKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +ALIDA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALIDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAKKGMIEIFELQKAAL 238
>gi|217967533|ref|YP_002353039.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
gi|254782720|sp|B8E2S5.1|PNP_DICTD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|217336632|gb|ACK42425.1| Polyribonucleotide nucleotidyltransferase [Dictyoglomus turgidum
DSM 6724]
Length = 693
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKVHGSV 68
R DGRR +ELR + C +GV S+ GSA ++G T+VL+ V G + I+
Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEI---SLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
I+ Y+ FS GE K P K EI +L R + E P + I + EV
Sbjct: 375 YIH-HYNFPPFSVGEAK--PLRGPKRREIGHGALAERALLPLIPKEEEFPYT-IRVVSEV 430
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L ++G A V ++L+L+DAG+P++ +V + L + L DI LE+ LGG
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLTDIQGLEDALGGM 490
Query: 182 NLTVA 186
+ +A
Sbjct: 491 DFKIA 495
>gi|409427131|ref|ZP_11261658.1| ribonuclease PH [Pseudomonas sp. HYS]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALRVVKKRGGLKGGDPLKHMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAI 225
LE++ +L V G + V ++ + L +L A KG D+ +
Sbjct: 180 LEDSAAETDLNVVMTSQGGFIEVQGTAEGAPFQPEELNAMLALAQKGMIDLFEL 233
>gi|378953649|ref|YP_005211137.1| hypothetical protein PSF113_5768 [Pseudomonas fluorescens F113]
gi|359763663|gb|AEV65742.1| Rph [Pseudomonas fluorescens F113]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEALNAMLELAKKGMNEIFELQKAAL 238
>gi|398976557|ref|ZP_10686463.1| ribonuclease PH [Pseudomonas sp. GM25]
gi|424925640|ref|ZP_18349001.1| ribonuclease PH [Pseudomonas fluorescens R124]
gi|398139393|gb|EJM28394.1| ribonuclease PH [Pseudomonas sp. GM25]
gi|404306800|gb|EJZ60762.1| ribonuclease PH [Pseudomonas fluorescens R124]
Length = 240
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>gi|260782066|ref|XP_002586113.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
gi|229271204|gb|EEN42124.1| hypothetical protein BRAFLDRAFT_109996 [Branchiostoma floridae]
Length = 153
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 29 GVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSVLINFQYSMAVFSTGERKTR 87
GV SQ+ GSAYIE G TKV+AAVYGPR + R + + G + ++ A F+ R+
Sbjct: 15 GVVSQATGSAYIEMGQTKVIAAVYGPREIARREEFTMKGRLCCELKF--ATFACRRRRQH 72
Query: 88 PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCA 135
+ D + + +L + QA+ A+ + P+SQ+D+++ VLQ DG CA
Sbjct: 73 IQ-DNQEKDGALIVLQALEPAVCLDRFPKSQVDVYITVLQDDGSGHCA 119
>gi|421503119|ref|ZP_15950070.1| ribonuclease PH [Pseudomonas mendocina DLHK]
gi|400346195|gb|EJO94554.1| ribonuclease PH [Pseudomonas mendocina DLHK]
Length = 239
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTVSVETGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMTKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGALKGEPLKQMIAAVSVGIYQGEPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V ++ D +L A KG +I + A+
Sbjct: 182 SAAETDLNVVMTNAGGFIEVQGTAEGAPFQPDEFNAMLALAQKGMNEIFELQQAAL 237
>gi|309812199|ref|ZP_07705957.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
gi|308433886|gb|EFP57760.1| tRNA nucleotidyltransferase [Dermacoccus sp. Ellin185]
Length = 255
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR +LR++R ++GS +E G T+VL A V + +K G+ +
Sbjct: 10 RHDGRTPDQLREVRITRNWLDHAEGSCLVEFGRTRVLCAASFTEGV-PRWLKGQGTGWVT 68
Query: 72 FQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M ST R R K T EIS + +++ A I ++ + I I +VLQ
Sbjct: 69 SEYEMLPRSTNTRSDREARKGKVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDVLQ 128
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +AL DA P+ + V A S + P++D+ +
Sbjct: 129 ADGGTRTASITGAYVALADAIADAQARGLIAKKAKPLTDSVAAISVGIVAGQPVLDLDYP 188
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADI 222
E++ ++ V G V V ++ D L +LD A G AD+
Sbjct: 189 EDSTAETDMNVVMTGSGGIVEVQGTAEGAPFSRDELNALLDLAADGIADL 238
>gi|156093968|ref|XP_001613022.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148801896|gb|EDL43295.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 271
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R + R+ +E+R + +LG SD S + GNTK+LA +YGP+P + G
Sbjct: 28 GTFRRINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGK 87
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
V + + S+ + G D I L + VS+ I+ + +P+ I+I ++Q
Sbjct: 88 VFLEIR-SLNMNDDGA------NDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQ 140
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVA 157
DGG A + +LAL +A I MR+ +V+
Sbjct: 141 NDGGCLSATLTCISLALTNAQIKMRDIIVS 170
>gi|452877074|ref|ZP_21954395.1| ribonuclease PH [Pseudomonas aeruginosa VRFPA01]
gi|452186145|gb|EME13163.1| ribonuclease PH [Pseudomonas aeruginosa VRFPA01]
Length = 252
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 13 NDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINF 72
+ GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 17 SSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLTA 75
Query: 73 QYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+QA
Sbjct: 76 EYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQA 135
Query: 129 DGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEET 177
DGG A + AT+ALIDA G P+++ V A S + P++D+ +LE++
Sbjct: 136 DGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDS 195
Query: 178 LGGPNLTVAALPLSGKVAV 196
+L V G + V
Sbjct: 196 AAETDLNVVMTDSGGFIEV 214
>gi|398999566|ref|ZP_10702302.1| ribonuclease PH [Pseudomonas sp. GM18]
gi|398131601|gb|EJM20917.1| ribonuclease PH [Pseudomonas sp. GM18]
Length = 240
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAKKGMIEIFELQKAAL 238
>gi|359782443|ref|ZP_09285664.1| ribonuclease PH [Pseudomonas psychrotolerans L19]
gi|359369710|gb|EHK70280.1| ribonuclease PH [Pseudomonas psychrotolerans L19]
Length = 240
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 22/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+TKV+ A+V P + +K G
Sbjct: 3 RPSGRAADQLRPIRITRQYTKHAEGSVLVEFGDTKVICTASVEAGVP---RFLKGKGQGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH----PRSQIDIFVEV 125
+ +Y M +TGER R K +L++++ + ++ + V + I I +V
Sbjct: 60 LTAEYGMLPRATGERNQREAAKGKQGGRTLEIQRLIGRSLRAAVDLSKLGENTIYIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
+QADGG A V A +AL+DA G P+++ V A S + TP++D+ +L
Sbjct: 120 IQADGGTRTASVTGACVALVDALGALKRRGNLKGNPLKQMVAAISVGIYQGTPVLDLDYL 179
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIK 231
E++ +L V G + V ++ L +L+ A G D+ + A++
Sbjct: 180 EDSAAETDLNVIMTGAGGFIEVQGTAEGAPFQPAELNAMLELAQGGLRDLFELQQAALR 238
>gi|404400774|ref|ZP_10992358.1| ribonuclease PH [Pseudomonas fuscovaginae UPB0736]
Length = 240
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRATGERTQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + + +AL D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGSMVALADALKVIKKRGGLKAGNPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMGEIFDLQNAAL 238
>gi|398963387|ref|ZP_10679556.1| ribonuclease PH [Pseudomonas sp. GM30]
gi|398149897|gb|EJM38531.1| ribonuclease PH [Pseudomonas sp. GM30]
Length = 240
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKSGDPLKQMIGAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEDLNAMLELAKKGMNEIFELQKAAL 238
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 24/149 (16%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS-VLINFQYSMAVF 79
LR + C L + ++SDGSA + QG T V A+V GP V+ + + V S V I+F
Sbjct: 10 LRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHF------- 62
Query: 80 STGERKTRPR------GDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
RPR DR + +R +A+++ +HPR+ + I ++ +Q GG
Sbjct: 63 -------RPRSGMGSVNDRLLENL---IRNTYESALLTALHPRTAVSIQIQEMQDRGGLV 112
Query: 134 CACVNAATLALIDAGIPMREYVVACSASL 162
+NA LALID+GI M+ V A + L
Sbjct: 113 ACAINAVCLALIDSGIEMKYLVAAVHSVL 141
>gi|77461768|ref|YP_351275.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
gi|123602792|sp|Q3K4M0.1|RNPH_PSEPF RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|77385771|gb|ABA77284.1| ribonuclease PH [Pseudomonas fluorescens Pf0-1]
Length = 240
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDLTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>gi|440694444|ref|ZP_20877062.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
gi|440283554|gb|ELP70805.1| tRNA nucleotidyltransferase [Streptomyces turgidiscabies Car8]
Length = 245
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 113/254 (44%), Gaps = 44/254 (17%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS + G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + G P
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAITWAQGKKLIRASRQPLTGTVSAVSVGIVGGVP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADI 222
L+D+ + E+ ++ V +G +E+ ++ D L +LD A+ GCAD+
Sbjct: 175 LLDLCYEEDVRAETDMNVVC---TGDGRFVEVQGTAEAEPFARDELNSILDLAVAGCADL 231
Query: 223 HAI----LDTAIKQ 232
A+ LDTA+++
Sbjct: 232 AALQRKALDTALER 245
>gi|380302959|ref|ZP_09852652.1| RNAse PH [Brachybacterium squillarum M-6-3]
Length = 249
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 107/236 (45%), Gaps = 22/236 (9%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
G R DGR +LR++R + G ++GSA IE G T+VL AA + R K K GS
Sbjct: 10 GDRVDGRTPDQLREVRIQRGWLDHAEGSALIEFGRTRVLCAASFTEGVPRWK--KGSGSG 67
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y+M +T R R K T EIS + +++ A I E + I + +
Sbjct: 68 WVTAEYAMLPRATDSRSQRESVKGKIGGRTHEISRLIGRSLRAIIDLEALGENTIQLDCD 127
Query: 125 VLQADGGNFCACVNAATLALID--------AGIP-----MREYVVACSASLAGDTPLVDI 171
VLQADGG A + A +AL D A IP + + V A S + PL+D+
Sbjct: 128 VLQADGGTRTAAITGAYVALADAISWGKRHASIPVTREVLTDSVSAISVGIVDGRPLLDL 187
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
+ E+ ++ V V V ++ D L +LD A GCA + I
Sbjct: 188 EYREDVTAETDMNVVVTGSGSFVEVQGTAEGAPFDRTELGALLDLAEGGCASLAQI 243
>gi|206890011|ref|YP_002249618.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|257096715|sp|B5YHN2.1|PNP_THEYD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206741949|gb|ACI21006.1| polyribonucleotide nucleotidyltransferase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 710
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
G+R DGR+ E+R I C +G+ + GSA +G T+ L A G K + G +
Sbjct: 318 GIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEI 377
Query: 69 LINF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
F Y+ FS GE K R G R+ L R A+S I S+ I + ++
Sbjct: 378 FKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAER-ALSYVIPSKDEFPYTIRVVSDI 436
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGDTPLV--DISHLEETLGGP 181
L+++G + A V ATL+L+DAG+P++ V + L GD +V DI +E+ G
Sbjct: 437 LESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVVLTDILGMEDHYGDM 496
Query: 182 NLTVA 186
+ VA
Sbjct: 497 DFKVA 501
>gi|387896362|ref|YP_006326659.1| ribonuclease PH [Pseudomonas fluorescens A506]
gi|423694294|ref|ZP_17668814.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens SS101]
gi|387160950|gb|AFJ56149.1| ribonuclease PH [Pseudomonas fluorescens A506]
gi|387999760|gb|EIK61089.1| tRNA nucleotidyltransferase [Pseudomonas fluorescens SS101]
Length = 240
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQKGMTEIFELQNAAL 238
>gi|238927868|ref|ZP_04659628.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
gi|238884288|gb|EEQ47926.1| ribonuclease PH [Selenomonas flueggei ATCC 43531]
Length = 248
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D RR +LR +R G +DGSA IE G+T+V+ A V +K G+ +
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERV-PFFLKGTGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM + ER R RG + +T EI + +A+ A + ++ I I +VLQ
Sbjct: 62 AEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA--------GI-PMREYVVACSASL-AGDTPLVDISHLEET 177
ADGG A V A +AL++A GI P+R+YV A S + A + PL+D+ + E++
Sbjct: 122 ADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEEDS 181
Query: 178 LGGPNLTVAALPLSGKVAVMEL 199
++ + ++G A +E+
Sbjct: 182 AAMVDMNIV---MTGAGAFVEV 200
>gi|389680614|ref|ZP_10171964.1| tRNA nucleotidyltransferase [Pseudomonas chlororaphis O6]
gi|388555719|gb|EIM18962.1| tRNA nucleotidyltransferase [Pseudomonas chlororaphis O6]
Length = 240
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMTRLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPVKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAKKGMSEIFELQQAAL 238
>gi|374851647|dbj|BAL54601.1| ribonuclease PH [uncultured prokaryote]
Length = 243
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 25/204 (12%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVLIN 71
DGR ELR +R +GS YIE G+T+V+ A+V P +K G I
Sbjct: 2 DGRTAEELRNVRIVRHFLKHPEGSCYIEMGDTRVICSASVEDKVP---HFLKNTGKGWIT 58
Query: 72 FQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEVL 126
+YSM ST R R R + +T EI + +++ A + E+ R+ I I +V+
Sbjct: 59 AEYSMLPRSTATRTPRESVVGRINGRTHEIQRLIGRSMRAVTKLDELGERT-IWIDCDVI 117
Query: 127 QADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A +AL+DA + P+R+ V A S G LVD+++LE
Sbjct: 118 QADGGTRTASITGAFVALVDALVFLLKEGKIQVLPLRDSVAAVSVGKVGGEILVDLTYLE 177
Query: 176 ETLGGPNLTVAALPLSGKVAVMEL 199
++ ++ L ++GK V+E+
Sbjct: 178 DSRAQVDMN---LVMTGKGEVIEI 198
>gi|395495629|ref|ZP_10427208.1| ribonuclease PH [Pseudomonas sp. PAMC 25886]
gi|395799920|ref|ZP_10479199.1| ribonuclease PH [Pseudomonas sp. Ag1]
gi|421140721|ref|ZP_15600717.1| ribonuclease PH [Pseudomonas fluorescens BBc6R8]
gi|395335762|gb|EJF67624.1| ribonuclease PH [Pseudomonas sp. Ag1]
gi|404507923|gb|EKA21897.1| ribonuclease PH [Pseudomonas fluorescens BBc6R8]
Length = 240
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 238
>gi|304438692|ref|ZP_07398630.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368341|gb|EFM22028.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 248
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D RR +LR +R G +DGSA IE G+T+V+ A V +K G+ +
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYADGSALIETGHTRVVCAATVEERV-PFFLKGTGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM + ER R RG + +T EI + +A+ A + ++ I I +VLQ
Sbjct: 62 AEYSMLPGAGAERTAREAVRGHQSGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA--------GI-PMREYVVACSASL-AGDTPLVDISHLEET 177
ADGG A V A +AL++A GI P+R+YV A S + A + PL+D+ + E++
Sbjct: 122 ADGGTRTASVTGAFVALVEACASFYAKRGIFPVRDYVAAVSVGINAENEPLLDLCYEEDS 181
>gi|281200684|gb|EFA74902.1| hypothetical protein PPL_11936 [Polysphondylium pallidum PN500]
Length = 262
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 43/250 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
++ R + R+I G+ S + GS+YIE TK++ +V+GPR ++ + +
Sbjct: 51 VKRTSRSDEQFRQIFMNTGIISSASGSSYIEIEQTKIICSVHGPRATHK--TELFETAKL 108
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
N + A FST + ++ K + SL + QA+ AI E +P++ IDI++ VL G
Sbjct: 109 NCELKYASFSTHDARSDYVESTKEKDYSLIITQAIIGAIRLEKYPKAAIDIYILVLCDAG 168
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
A + AA++AL DAG+ M + V ACS ++P
Sbjct: 169 SALAASIVAASMALADAGVEMYDLVAACS---------------------------SMPS 201
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQLG 250
++ + + +L ++ +D + GC +++I+ KQ+LI L R
Sbjct: 202 HNEITQLLQTGELSYTNIVDGIDLCIDGCDKVYSIM----KQNLID-----SLKR----- 247
Query: 251 QLTGKKKEEE 260
QL K++E+E
Sbjct: 248 QLLKKEQEQE 257
>gi|398837637|ref|ZP_10594929.1| ribonuclease PH [Pseudomonas sp. GM102]
gi|398118652|gb|EJM08382.1| ribonuclease PH [Pseudomonas sp. GM102]
Length = 240
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRASLDMTKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALIDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L A KG +I + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAKKGMIEIFELQKAAL 238
>gi|334127597|ref|ZP_08501509.1| tRNA nucleotidyltransferase [Centipeda periodontii DSM 2778]
gi|333389551|gb|EGK60716.1| tRNA nucleotidyltransferase [Centipeda periodontii DSM 2778]
Length = 248
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D RR +LR +R G GSA IE G+T+VL A V +K G+ +
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYPAGSALIETGHTRVLCAATVEERV-PFFLKGSGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM + ER R RG + +T EI + +A+ A + + + I +VLQ
Sbjct: 62 AEYSMLPGAGTERTAREAMRGHQTGRTQEIQRLIGRALRAVVDMKALGERTVHIDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA--------GI-PMREYVVACSASL-AGDTPLVDISHLEET 177
ADGG A + A +AL++A GI P+R+YV A S + A DTPL+DI + E++
Sbjct: 122 ADGGTRTASITGAFVALVEACATFYTKHGIFPVRDYVAAVSVGVSADDTPLLDICYEEDS 181
>gi|365839070|ref|ZP_09380319.1| polyribonucleotide nucleotidyltransferase [Anaeroglobus geminatus
F0357]
gi|364565638|gb|EHM43355.1| polyribonucleotide nucleotidyltransferase [Anaeroglobus geminatus
F0357]
Length = 715
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 32/233 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGSVL 69
+R DGR+ +E+R + C G+F ++ G+ +G T++L+ A P ++S + G L
Sbjct: 312 IRPDGRKVNEVRPVSCEAGLFRRTHGTGLFTRGQTQILSFATLAPL---SESQHIDGVGL 368
Query: 70 -----INFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
Y+ FS GE R +R G R+ L R V E P + + +
Sbjct: 369 ETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVMPSEEEFPYA-VRVVS 427
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLG 179
EVL+++G + V +TLAL+DAG+P++ V + L T L DI +E+ LG
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPIKAPVAGVAMGLVTKDDDFTILTDIQGMEDALG 487
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ VA G A+ +D +KG + ILDTA+KQ
Sbjct: 488 DMDFKVAGTK-RGVTAIQ--------------MDIKIKGLS--REILDTALKQ 523
>gi|229593356|ref|YP_002875475.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
gi|408479743|ref|ZP_11185962.1| ribonuclease PH [Pseudomonas sp. R81]
gi|259494125|sp|C3K479.1|RNPH_PSEFS RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|229365222|emb|CAY53520.1| ribonuclease PH [Pseudomonas fluorescens SBW25]
Length = 240
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 238
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR + C L S DGSA + QGNT V+A +YGP I+ +I + S+ V
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGP-------IEAKPQKMIYDKASIEVSY 67
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
+ DR T + +++ AAI+ HP + I I ++ ++ GG +NAA
Sbjct: 68 IPVKGPAKIDDRMTE---MYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAA 124
Query: 141 TLALIDAGIPMREYVVA 157
LALI+AGIPM+ + A
Sbjct: 125 CLALINAGIPMKFTIAA 141
>gi|385652716|ref|ZP_10047269.1| ribonuclease PH [Leucobacter chromiiresistens JG 31]
Length = 246
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
LR DGR + R + G +Q++GSA I G TKVL A + P R + K G+
Sbjct: 5 LRADGRTPQQTRPVAIERGWSAQAEGSALISFGGTKVLCTASFTPGVPRWLTGK--GTGW 62
Query: 70 INFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM ST ER R R +T EIS + +++ A I ++ + I I +V
Sbjct: 63 VTAEYSMLPRSTNERMQRESIKGRVGGRTHEISRLIGRSLRAVIDTKALGENTIVIDCDV 122
Query: 126 LQADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A + A +AL+DA P+ + V A S + PL D++
Sbjct: 123 LQADGGTRTASITGAYVALVDAIEWARERGFIAKRAQPLTDSVAAISVGIVDGVPLTDLA 182
Query: 173 HLEETLGGPNLTV 185
++E++ ++ V
Sbjct: 183 YVEDSRAETDMNV 195
>gi|335040856|ref|ZP_08533977.1| Polyribonucleotide nucleotidyltransferase [Caldalkalibacillus
thermarum TA2.A1]
gi|334179291|gb|EGL81935.1| Polyribonucleotide nucleotidyltransferase [Caldalkalibacillus
thermarum TA2.A1]
Length = 712
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 15/209 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR+ E+R I C +G+ +++ GS +G T+ L+ G + + + V
Sbjct: 321 IRPDGRKSDEIRSISCEVGLLARTHGSGLFTRGQTQALSVCTLGALGDVQILD-GLGVEE 379
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ FS GE R R G R+ +L R A+ I SE I + EV
Sbjct: 380 SKRFMHHYNFPPFSVGEARPPRAPGRREIGHGALGER-ALEPVIPSEEEFPYTIRLVSEV 438
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GD--TPLVDISHLEETLGGP 181
L+++G A + A+TLAL+DAG+P++ V + L GD T L DI +E+ LG
Sbjct: 439 LESNGSTSQASICASTLALMDAGVPIKAPVAGIAMGLVKEGDQITILSDIQGIEDALGDM 498
Query: 182 NLTVAALPLSGKVAVMELSQKLHLDHLPR 210
+ VA K V L + +D L +
Sbjct: 499 DFKVAGT----KKGVTALQMDIKIDQLSK 523
>gi|337291437|ref|YP_004630458.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|397654621|ref|YP_006495304.1| ribonuclease PH [Corynebacterium ulcerans 0102]
gi|334699743|gb|AEG84539.1| ribonuclease PH [Corynebacterium ulcerans BR-AD22]
gi|393403577|dbj|BAM28069.1| ribonuclease PH [Corynebacterium ulcerans 0102]
Length = 244
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 31/234 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL----AAVYGPRPVRNKSIKVHGS 67
R DGR ++R ++ G + GS +E GNT+V+ A + PR R+ G
Sbjct: 8 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDS-----GE 62
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
+ +Y+M +T +R R RG K T EIS + +++ AA+ +SE+ + I+I
Sbjct: 63 GWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENT-INID 121
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P+++ V A S + T +D+
Sbjct: 122 CDVLQADGGTRTASITGAYVALADAIAHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDL 181
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELS---QKLHLDHLPRVLDCALKGCADI 222
+ E++ ++ V + SG+ ++ + D L R+LD A KGCA++
Sbjct: 182 PYEEDSRADVDMNV--IMQSGRFVEIQGTGEHNTFDRDELARILDFAEKGCAEL 233
>gi|384516261|ref|YP_005711353.1| ribonuclease PH [Corynebacterium ulcerans 809]
gi|334697462|gb|AEG82259.1| ribonuclease PH [Corynebacterium ulcerans 809]
Length = 244
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 31/234 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL----AAVYGPRPVRNKSIKVHGS 67
R DGR ++R ++ G + GS +E GNT+V+ A + PR R+ G
Sbjct: 8 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDS-----GE 62
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
+ +Y+M +T +R R RG K T EIS + +++ AA+ +SE+ + I+I
Sbjct: 63 GWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENT-INID 121
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P+++ V A S + T +D+
Sbjct: 122 CDVLQADGGTRTASITGAYVALADAITHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDL 181
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELS---QKLHLDHLPRVLDCALKGCADI 222
+ E++ ++ V + SG+ ++ + D L R+LD A KGCA++
Sbjct: 182 PYEEDSRADVDMNV--IMQSGRFVEIQGTGEHNTFDRDELARILDFAEKGCAEL 233
>gi|308800668|ref|XP_003075115.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
gi|116061669|emb|CAL52387.1| putative exonuclease RRP41 (ISS) [Ostreococcus tauri]
Length = 321
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 2/181 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP--RPVRNKSIKVHGS 67
GLR DGRR +E+R+ R + +Q DGSA E GNT + V GP R +
Sbjct: 59 GLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAEEGASEA 118
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + + F++ + +GD ++ + L +A+++A+ ++ PR ++ + VL
Sbjct: 119 CALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQVRTTVLC 178
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG A AA LAL DAGIP++ + +C+ L+D++ EE GP L A
Sbjct: 179 DDGGARAASACAAVLALADAGIPLKGIIGSCTVGHLDGEALIDVNRDEERGRGPELWTCA 238
Query: 188 L 188
L
Sbjct: 239 L 239
>gi|443473936|ref|ZP_21063957.1| Ribonuclease PH [Pseudomonas pseudoalcaligenes KF707]
gi|442904871|gb|ELS29786.1| Ribonuclease PH [Pseudomonas pseudoalcaligenes KF707]
Length = 239
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 22/238 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+TKV+ A+V P + +K G
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTASVEAGVP---RFLKGQGQGW 59
Query: 70 INFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +TGER R RG + +T EI + +++ AA+ + + + +V
Sbjct: 60 LTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTVYLDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
+QADGG A + A +AL+DA G P+++ V A S + P++D+ +L
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVLKKRGALKGEPLKQMVAAVSVGIYQGVPVLDLDYL 179
Query: 175 EETLGGPNLTVAALPLSGKVAVMELS--QKLHLDHLPRVLDCALKGCADIHAILDTAI 230
E++ +L V G + V + + + L +L+ A +G ++ + A+
Sbjct: 180 EDSAAETDLNVVMTEAGGFIEVQGTAEGEPFQPEELTAMLELARQGLNELFELQRAAL 237
>gi|312898454|ref|ZP_07757844.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
gi|310620373|gb|EFQ03943.1| polyribonucleotide nucleotidyltransferase [Megasphaera
micronuciformis F0359]
Length = 717
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 26/230 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGP--RPVRNKSIKVHGS 67
+R DGR+ +E+R + C +G+F ++ G+ +G T++L+ A P +
Sbjct: 312 IRPDGRKVNEVRPVSCEVGLFKRTHGTGLFTRGQTQILSFATLAPLSEAQHIDGVGTETE 371
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ L R A++ + SE I + EVL
Sbjct: 372 RRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAER-ALTQVMPSEEEFPYAIRVVSEVL 430
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + V +TLAL+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 431 ESNGSSSMGSVCGSTLALMDAGVPIKAPVSGVAMGLVTKDDDFTILTDIQGMEDALGDMD 490
Query: 183 LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
VA G A+ +D +KG + ILDTA+KQ
Sbjct: 491 FKVAGT-TKGVTAIQ--------------MDIKIKGLS--REILDTALKQ 523
>gi|398867513|ref|ZP_10622970.1| ribonuclease PH [Pseudomonas sp. GM78]
gi|398236651|gb|EJN22426.1| ribonuclease PH [Pseudomonas sp. GM78]
Length = 240
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSSGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFDLQKAAL 238
>gi|388543938|ref|ZP_10147227.1| ribonuclease PH [Pseudomonas sp. M47T1]
gi|388277766|gb|EIK97339.1| ribonuclease PH [Pseudomonas sp. M47T1]
Length = 240
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRSQIDIFV--EVLQ 127
+Y M +TGER R K +L++++ + ++ + ++ + ++V +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASKGKQGGRTLEIQRLIGRSLRAALDMSKLGDVTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKHMISAVSVGMYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ + L +L A KG D+ + A+
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAQKGMVDLFELQKAAL 238
>gi|448111337|ref|XP_004201817.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359464806|emb|CCE88511.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-----SIKVHGSVL 69
G+ E+RK+ + G+ S ++GS+YIE N V +V+GPRP+R S V L
Sbjct: 34 GKSDDEVRKVFIKTGLVSNANGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFL 93
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA----IMSEVHPRSQIDIFVEV 125
+ G+ G + +E+ ++ Q V A I+ E +P+S ID+FV V
Sbjct: 94 PYLKQPQEDLFGGDTHANNNGRQGLTEVEHKISQYVETAFLPCILLEKYPKSTIDVFVTV 153
Query: 126 LQADGGNFCA----------CVNAATLALIDAGIPMREYVVA 157
+ GN A VN ++LA+ID+GI +++ V +
Sbjct: 154 IST--GNTTAPSNILNLTNWIVNCSSLAIIDSGIEIKDIVTS 193
>gi|323359606|ref|YP_004226002.1| RNase PH [Microbacterium testaceum StLB037]
gi|323275977|dbj|BAJ76122.1| RNase PH [Microbacterium testaceum StLB037]
Length = 241
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR + G + ++GSA I G TKVL V + + G +
Sbjct: 3 RKDGRTTDQLRPVTIERGWSAHAEGSALITFGGTKVLCTASFTNGV-PRWLTGKGKGWVT 61
Query: 72 FQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+Y+M R T R DR +T EIS + +A+ A + ++ + I I
Sbjct: 62 AEYAML-----PRATNSRNDRESIKGKVGGRTHEISRLIGRALRAVVDTKALGENTIVID 116
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMRE-------------YVVACSASLAGDTPLV 169
+VLQADGG A + A +AL DA RE V A S + P++
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAIAWGREKKFIAQRSEVLIDSVSAVSVGIIDGEPML 176
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAILD 227
D++++E+ ++ V V V ++ D L R+LD A+ GCA++ I
Sbjct: 177 DLAYVEDVRAETDMNVVVTGRGLFVEVQGTAEGAPFDKAELDRLLDLAVNGCAELRGIQT 236
Query: 228 TAIK 231
A++
Sbjct: 237 AALE 240
>gi|399156520|ref|ZP_10756587.1| ribonuclease PH [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 248
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 20/227 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYG--PRPVRNKSIKVHG 66
LR DGR+ +E R + L ++GS + GNTK++ A+V P + +K K H
Sbjct: 5 LRTDGRKNNEERPLEISLDYTMHAEGSVLVSSGNTKIICTASVENKVPDWLLDKDKKPHH 64
Query: 67 SVLINFQYSMAVFSTGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M STG R+ R G D ++ EI + +++ + + V I I +
Sbjct: 65 G-WVTSEYGMLPRSTGSRRKRETGKIDGRSQEIQRLIGRSLRSVVNLSVLGEHTIWIDCD 123
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + +ALI A P++EY+ A S + P++D+ +
Sbjct: 124 VIQADGGTRTAAITGGFVALILALRNIFKTGNIKEFPVKEYLAAISVGIVNSQPMLDLKY 183
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKG 218
E+ ++ V L V V ++ + L +LD A++G
Sbjct: 184 DEDKAAEVDMNVVMLESGEFVEVQATAEGKTYSREQLDLMLDLAVQG 230
>gi|146309400|ref|YP_001189865.1| ribonuclease PH [Pseudomonas mendocina ymp]
gi|166228302|sp|A4Y0L7.1|RNPH_PSEMY RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145577601|gb|ABP87133.1| RNAse PH [Pseudomonas mendocina ymp]
Length = 239
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V ++ + +L A KG +I + A+
Sbjct: 182 SAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAAL 237
>gi|46015433|pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Pseudomonas Aeruginosa
Length = 239
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGXLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQXVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAV 196
+ +L V G + V
Sbjct: 182 SAAETDLNVVXTDAGGFIEV 201
>gi|291295492|ref|YP_003506890.1| ribonuclease PH [Meiothermus ruber DSM 1279]
gi|290470451|gb|ADD27870.1| ribonuclease PH [Meiothermus ruber DSM 1279]
Length = 238
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY----GPRPVRNKSIKVHGS 67
R DGR ELR + R+G ++GSA +E G+TKVL V PR V + G
Sbjct: 3 RKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSGRE----GW 58
Query: 68 VLINFQYSMAVFSTGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
++ +Y++ ST ERK R R +T+EI L +A AA+ + P + I +V
Sbjct: 59 LMA--EYNLLPRSTKERKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADV 116
Query: 126 LQADGGNFC-------ACVNAATLALIDAG----IPMREYVVACSASLAGDTPLVDISHL 174
+QADGG A ++ A L++ G P+ E+ ++ D+ L+D++ +
Sbjct: 117 IQADGGTRVASLLGGYAALHMAMDRLVNQGKLDEWPLTEFAAVSVGWMSDDSLLLDLTQI 176
Query: 175 EETLGGPNLTVAA 187
E+ +LTV A
Sbjct: 177 EDENAWADLTVVA 189
>gi|392577921|gb|EIW71049.1| hypothetical protein TREMEDRAFT_27507 [Tremella mesenterica DSM
1558]
Length = 263
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 13/213 (6%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKT 86
+ G+ Q++GS Y+E G K+ +VYGPRP + G+ +N + A F++ R+
Sbjct: 48 KAGLIDQANGSGYVEIGGVKIACSVYGPRP-KQPPYSPEGT--LNLEIKFAPFASHPRRA 104
Query: 87 RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD--GGNFCACVNAATLAL 144
P D + +S L + + + + P+S ID+F+ +L++D A + A+ A+
Sbjct: 105 -PLRDTEPIPLSTLLYRLLLPCLQLHLLPKSSIDVFLLILESDTLSNTLSAALTVASGAI 163
Query: 145 IDAGIPMREY----VVACSASLAGDTP---LVDISHLEETLGGPNLTVAALPLSGKVAVM 197
+AGIPM VVA G+ + D S EE LT+ +P GK++
Sbjct: 164 ANAGIPMSALGIGGVVARGEGAGGEKRSELICDPSIEEENSAEACLTLGVMPALGKLSSC 223
Query: 198 ELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ + ++ + ++DCA+K HA+L T +
Sbjct: 224 WFTGEADVEDVGLMVDCAVKETKMTHAVLATGL 256
>gi|395651697|ref|ZP_10439547.1| ribonuclease PH [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 240
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRVADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMTKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 238
>gi|395773976|ref|ZP_10454491.1| ribonuclease PH [Streptomyces acidiscabies 84-104]
Length = 245
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS + G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTLERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRATNTRGDRESVRGRIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + G P
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRQPITGTVSAVSVGIVGGVP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADI 222
L+D+ + E+ ++ V +G +E+ ++ D L +LD A+ GC D+
Sbjct: 175 LLDLCYEEDVRADTDMNVVC---TGDGRFVEVQGTAEAEPFARDELNSLLDLAVSGCTDL 231
Query: 223 HAILDTAIKQHL 234
A+ A++Q L
Sbjct: 232 AALQRAALEQAL 243
>gi|415727339|ref|ZP_11471437.1| ribonuclease PH [Gardnerella vaginalis 00703Dmash]
gi|388062236|gb|EIK84854.1| ribonuclease PH [Gardnerella vaginalis 00703Dmash]
Length = 253
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR +R +GS IE GNT+V+ V PR R+ +
Sbjct: 14 IRVDGREVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 70
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 71 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 128
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ V A S + TP++
Sbjct: 129 CDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVLKDAVSAVSVGVINGTPML 188
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 189 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239
>gi|117928891|ref|YP_873442.1| ribonuclease PH [Acidothermus cellulolyticus 11B]
gi|117649354|gb|ABK53456.1| RNAse PH [Acidothermus cellulolyticus 11B]
Length = 240
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR ELR +R G ++GS +E G T+VL A V K K G +
Sbjct: 2 LRVDGRAADELRPVRFTRGWLLHAEGSVLVEFGRTRVLCAASVLEGV-PKWRKGTGLGWV 60
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T R R R +T EIS + +++ A + + + + +VL
Sbjct: 61 TGEYAMLPRATTTRTDRESVRGRLGGRTQEISRLVGRSLRACVEPARLGENTVHLDCDVL 120
Query: 127 QADGGNFCACVNAATLALIDAGIPMREY-----------VVACSASLAGDTPLVDISHLE 175
QADGG A + A LAL DA MR++ V A S + P++D+ + E
Sbjct: 121 QADGGTRTAAITGAYLALADACRWMRDHGWVTSDPLVRSVAAVSVGIVDGVPVLDLCYDE 180
Query: 176 ETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ G ++ V ++G +E+ L D + +L+ A +GCA + + TA+
Sbjct: 181 DVRAGTDMNVV---MTGDGDFVEIQGTAEGTPLRRDEVDALLELATRGCARLTELQRTAL 237
Query: 231 KQ 232
+
Sbjct: 238 AE 239
>gi|429331695|ref|ZP_19212446.1| ribonuclease PH [Pseudomonas putida CSV86]
gi|428763607|gb|EKX85771.1| ribonuclease PH [Pseudomonas putida CSV86]
Length = 240
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVVCTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALRVVKKRGGLKGGDPLKHMIAAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG AD+ + A+
Sbjct: 180 LEDSAAETDLNVVMTSSGGFIEVQGTAEGAPFQPQELNAMLAIAQKGMADLFELQKAAL 238
>gi|83589904|ref|YP_429913.1| polynucleotide phosphorylase/polyadenylase [Moorella thermoacetica
ATCC 39073]
gi|123524642|sp|Q2RJL9.1|PNP_MOOTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83572818|gb|ABC19370.1| Polyribonucleotide nucleotidyltransferase [Moorella thermoacetica
ATCC 39073]
Length = 747
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
+LTE G+R DGR E+R I C +GV S++ GS +G T+VL V P+ ++ I
Sbjct: 325 ILTE---GIRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVL-TVTTLGPISDEQI 380
Query: 63 ----KVHGSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
V S Y+ +S GE R R G R+ +L R A+ I SE
Sbjct: 381 LDDLGVDESKRYMHHYNFPPYSVGEARPIRAPGRREIGHGALAER-ALEPMIPSEEEFPY 439
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISH 173
I + EVL ++G V +TL+L+DAG+P++ V + L + L DI
Sbjct: 440 AIRLVSEVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGVAMGLVKENDQVAILTDIQG 499
Query: 174 LEETLGGPNLTVA 186
LE+ LG + VA
Sbjct: 500 LEDALGDMDFKVA 512
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 24/152 (15%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR+ C + S+ DGSA QG+T VLA VYGP ++ S ++H +
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGPAEIK-VSREIHNK------------A 63
Query: 81 TGERKTRPRGDRKTSEISLQ-------LRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
T E RP KT ++Q +R+ + I+ +HPR+ I I ++++ G
Sbjct: 64 TLEVILRP----KTGLPAIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLL 119
Query: 134 CACVNAATLALIDAGIPMREYVVACSASLAGD 165
C+NAA + L+DAG+PMR + +L D
Sbjct: 120 SCCLNAACMGLMDAGLPMRSLFCGVTCALDND 151
>gi|402701294|ref|ZP_10849273.1| ribonuclease PH [Pseudomonas fragi A22]
Length = 240
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRVADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TG+R R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRATGDRNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKLIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
E++ +L V G + V ++ + L +L A KG +I A+ A+
Sbjct: 180 PEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTEIFALQQAAL 238
>gi|72162764|ref|YP_290421.1| ribonuclease PH [Thermobifida fusca YX]
gi|71916496|gb|AAZ56398.1| RNAse PH [Thermobifida fusca YX]
Length = 239
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYG----PRPVRNKSIKVHGS 67
R DGR ++LR +R ++GSA IE G T+VL A PR R G
Sbjct: 3 RPDGRTPNQLRPVRITRNWLRHAEGSALIEFGETRVLCAATVEEGVPRWRRGT-----GE 57
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +Y+M +T R R K T EIS + +++ A + + I +
Sbjct: 58 GWVTAEYAMLPRATDTRSARESVKGKIGGRTHEISRLIGRSLRAVVDFKAMGEYTITLDC 117
Query: 124 EVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDIS 172
+VLQADGG A + A +AL+DA P+ V A S + P +D++
Sbjct: 118 DVLQADGGTRTAAITGAYVALVDAVRYLRKQLDLKTNPLTGSVAAVSVGIVQGQPRLDLN 177
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAILDTAI 230
+LE+++ ++ V + + ++ D L +LD A+ GCA++ I A+
Sbjct: 178 YLEDSVAETDMNVVVTGTGEFIEIQGTAENAPFDRKLLDTLLDLAVAGCAELTEIQKKAL 237
Query: 231 KQ 232
+
Sbjct: 238 SE 239
>gi|260579680|ref|ZP_05847543.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
gi|258602199|gb|EEW15513.1| tRNA nucleotidyltransferase [Corynebacterium jeikeium ATCC 43734]
Length = 256
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 22/242 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +ELR +R G S GS +E GNT+V+ A+V P + K G
Sbjct: 18 RADGRATNELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVP---RFKKDSGEGW 74
Query: 70 INFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y+M ST ER R +G K T EIS + +A+ AA+ + + ++I +V
Sbjct: 75 LTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDV 134
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL DA G P+R V A S + P +D+ +
Sbjct: 135 LQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYE 194
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADIHAILDTAIKQ 232
E++ ++ VA V + + + L +LD A G ++ A+ Q
Sbjct: 195 EDSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQ 254
Query: 233 HL 234
L
Sbjct: 255 EL 256
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR I C + S DGSA + QG+T V+A VYGP + + + ++ + Y+
Sbjct: 12 LRPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKM-IYDKAFVEVSYT----- 65
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
K + D + +E + +++ AI+ HP + I I ++ L+ GG +NAA
Sbjct: 66 --PIKGPAKVDDRMTE--MYIKETCETAIIVTFHPATAICINIQELEDSGGLLACIINAA 121
Query: 141 TLALIDAGIPMREYVVACSASLAGDT 166
LALI+A IPM+ + A S + T
Sbjct: 122 CLALINAAIPMKFTIAAVSCMIEEST 147
>gi|448097303|ref|XP_004198638.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
gi|359380060|emb|CCE82301.1| Piso0_002021 [Millerozyma farinosa CBS 7064]
Length = 278
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 21/162 (12%)
Query: 15 GRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-----SIKVHGSVL 69
G+ E+RK+ + G+ S + GS+YIE N V +V+GPRP+R S V L
Sbjct: 34 GKSDKEVRKVFIKTGLVSNASGSSYIEASNIIVEVSVFGPRPIRGSFTDRASFSVECKFL 93
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAA----IMSEVHPRSQIDIFVEV 125
+ G+ G + +E+ ++ Q V A I+ E +P+S ID+F+ V
Sbjct: 94 PYLKQPQEDLFRGDTHANNNGRQGLTEVEHKISQYVETAFLPCIILEKYPKSTIDVFITV 153
Query: 126 LQADGGNFCA----------CVNAATLALIDAGIPMREYVVA 157
+ GN A VN ++LALID+GI +++ V +
Sbjct: 154 IST--GNTTAPSSILNLTNWIVNCSSLALIDSGIEIKDIVTS 193
>gi|1079663|gb|AAC44429.1| RNase PH [Pseudomonas aeruginosa PAO1]
Length = 239
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 16/189 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
DGG A + AT++LIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 TDGGTRTASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTV 185
+ +L V
Sbjct: 182 SAAESDLNV 190
>gi|366166434|ref|ZP_09466189.1| ribonuclease PH [Acetivibrio cellulolyticus CD2]
Length = 258
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R DGR LRK++ ++GS IE G+TKV+ A+V P K+ G
Sbjct: 1 MRIDGREKSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTASVDDKVPPFKKN---SGEG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS----QIDIFVE 124
+ +YSM STG R R K + S ++++ + A+ S V+ + I I +
Sbjct: 58 WVTAEYSMLPRSTGVRNQRDISKLKLNGRSQEIQRLIGRALRSVVNFHALGERAIIIDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A +A++DA IP+ + V A S + GD ++D+ +
Sbjct: 118 VIQADGGTRTASITGAFVAMVDACKKLVEDGVIEKIPITDMVAAVSVGIIGDEEMLDLCY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQK--LHLDHLPRVLDCALKGCADIHAI 225
E++ ++ V + V ++ D L ++LD A G ++ +I
Sbjct: 178 GEDSNAVVDMNVVMTSSGEFIEVQATGEQSPFRRDQLNKLLDLAEVGIKELISI 231
>gi|378551363|ref|ZP_09826579.1| hypothetical protein CCH26_14789 [Citricoccus sp. CH26A]
Length = 269
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 8 GGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS 67
G R DGR + LR I G Q++GSA IE GNT+VL V + +K G+
Sbjct: 25 GTAARQDGRALNALRPISITRGWSRQAEGSALIEFGNTRVLCTASFTEGV-PRWLKGEGT 83
Query: 68 VLINFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +Y+M +T R R R +T EIS + +++ A I +V + I +
Sbjct: 84 GWVTAEYAMLPRATNTRSQRESVKGRIGGRTHEISRLIGRSLRAIIDLKVLGENTIVLDC 143
Query: 124 EVLQADGGNFCACVNAATLALIDA-------GI------PMREYVVACSASLAGDTPLVD 170
+VL+ADGG A + A +AL DA GI P+++ V A S + P++D
Sbjct: 144 DVLEADGGTRTAAITGAYVALADAITWAKGRGIIPAAAQPLKDSVAAVSVGIIDGVPMLD 203
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQ-----KLHLDHLPRVLDCALKGCADIHAI 225
+ ++E+ ++ V V V ++ + LD L LD A++G A++ I
Sbjct: 204 LPYVEDVRAETDMNVVVTGAGDFVEVQGTAEGAPFRRAELDAL---LDLAVEGTAELTRI 260
>gi|440796320|gb|ELR17429.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 236
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 31/148 (20%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-------SIKV 64
R+ GR ++LR + LG+ ++ DGSA G + V+ AVYGP V+++ +IKV
Sbjct: 5 RSGGRTNNQLRAVTSELGLLNKPDGSAKYTAGKSAVVVAVYGPIEVKHRDEILDRATIKV 64
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
H S S+G G + E + + V AI++ +HPR+ I+I V+
Sbjct: 65 HWSP-----------SSG------TGGPEEREKEMIVANVVQNAIIATLHPRTLIEIVVQ 107
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMR 152
+L A +NA LAL+DAGIP++
Sbjct: 108 ML-------AAAINATCLALVDAGIPLK 128
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 9/183 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKSIKVHGSVL 69
+R DGR ++R I C +GV ++ GSA +G T+ LA V G + + G +
Sbjct: 311 VRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQRIDALEGEYM 370
Query: 70 INF--QYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
F Y+ FS GE R R G R+ +L R S + P + + I E+L
Sbjct: 371 RTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPYT-VRIVSEIL 429
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGDTPLV--DISHLEETLGGPN 182
+++G + A V TLAL+DAG+P++E V + L GD LV DI LE+ LG +
Sbjct: 430 ESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSDILGLEDHLGDMD 489
Query: 183 LTV 185
V
Sbjct: 490 FKV 492
>gi|415717767|ref|ZP_11467002.1| ribonuclease PH [Gardnerella vaginalis 1500E]
gi|415728903|ref|ZP_11472241.1| ribonuclease PH [Gardnerella vaginalis 6119V5]
gi|388060650|gb|EIK83334.1| ribonuclease PH [Gardnerella vaginalis 1500E]
gi|388064903|gb|EIK87418.1| ribonuclease PH [Gardnerella vaginalis 6119V5]
Length = 253
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR +R +GS IE GNT+V+ V PR R+ +
Sbjct: 14 IRVDGRDVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 70
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 71 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 128
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ V A S + TP++
Sbjct: 129 CDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVLKDAVSAVSVGVINGTPML 188
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 189 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239
>gi|339492576|ref|YP_004712869.1| ribonuclease PH [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338799948|gb|AEJ03780.1| ribonuclease PH [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 240
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+TKV+ A++ P + +K G
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVP---RFLKGQGQGW 59
Query: 70 INFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +TGER R RG + +T EI + +++ AA+ + + I +V
Sbjct: 60 LTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +A+IDA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVAVIDALKVLKKRGGLKGGDPVKQMIAAVSVGIYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGC 219
LE++ +L V G + V ++ H D L +L A G
Sbjct: 180 LEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGV 227
>gi|83595868|gb|ABC25230.1| ribonuclease PH [uncultured marine bacterium Ant4D3]
Length = 256
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR I+ G ++GS IE G+T+VL R V + ++ GS +
Sbjct: 18 RPSGRATDQLRDIKITRGFTKHAEGSVLIEFGDTRVLCTATVERGV-PRFLRGSGSGWVT 76
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +T R R RG + +T EI + +++ A++ E + I + +VLQ
Sbjct: 77 AEYGMLPRATHSRNGREAARGKQGGRTLEIQRLIGRSLRASLNLEKLGENTITLDCDVLQ 136
Query: 128 ADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLVDISHL 174
ADGG A + A +A++DA G P+R + A S + D P++D+ +
Sbjct: 137 ADGGTRTASITGAYIAMVDAINVLKKDKNGAMRGDPLRRQIAAISVGIYKDEPVLDLDYD 196
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
E++ ++ V G + V ++ D + +L A KG +I A+ A+
Sbjct: 197 EDSKAETDMNVVMTADGGFIEVQGTAEGSPYTQDQMMAMLALARKGITEIAALQTAAL 254
>gi|150388786|ref|YP_001318835.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
gi|149948648|gb|ABR47176.1| ribonuclease PH [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR+ ELR ++ + GS +E G TKV+ V + +K G +
Sbjct: 3 RVDGRKFDELRPVKFTKNYTKHAQGSVLVEMGETKVICTAMVEERVPH-FLKNSGKGWVT 61
Query: 72 FQYSMAVFSTGERKTR--PRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM ST RK R RG + +T EI + +A+ + I E I I +V+Q
Sbjct: 62 AEYSMLPSSTNTRKIRESSRGKIEGRTQEIQRLIGRALRSVIDLEALGERTIWIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +AL++A IP++ YV A S + D P++D+ + E+
Sbjct: 122 ADGGTRTASITGAFIALVEAINSVKEAKKITYIPIKNYVSAISVGIVNDQPVLDLCYEED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQK--LHLDHLPRVLDCALKGCADIHAI 225
+ ++ + + + V ++ D L +L +G A + A+
Sbjct: 182 SKAMVDMNIVMTDMKEFIEVQGTGEEAPFSRDSLMELLRLGEEGNAQLIAL 232
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGS 67
GG R DGR ++LR C ++ GSA QG+T VLAAVYGP+ R S
Sbjct: 4 GGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKAS 63
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+ + ++ ER E + L++ + + + VHP + + ++V+
Sbjct: 64 IEVVWKPKTGQIGRQER-----------EYEMTLKRTLQSICLLTVHPNTTTSVVLQVVG 112
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEE 176
DG +NA+ AL AGIPM+ VA S + + ++D S EE
Sbjct: 113 DDGSLMSCAINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEE 162
>gi|303232084|ref|ZP_07318787.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
gi|302513190|gb|EFL55229.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-049-V-Sch6]
Length = 689
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P + I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R V E P + + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYA-LRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVA 186
VA
Sbjct: 488 FKVA 491
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMA 77
G LR+ C + S+ DGSA QG+T V+A VYGP ++ S ++H
Sbjct: 16 GSVLREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGPAEIK-VSREIHNK---------- 64
Query: 78 VFSTGERKTRPRGDRKTSEISLQ---LRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFC 134
+T E RP+ + Q +R+ + I+ +HPR+ I I ++++ G
Sbjct: 65 --ATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLS 122
Query: 135 ACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGK 193
C+NAA + L+DAG+PMR + ++ D T +D + ++ LT A K
Sbjct: 123 CCLNAACMGLMDAGLPMRALFCGVTCAMDNDGTITLDPNFRQQKESRAVLTFAIESTERK 182
Query: 194 VAVM 197
V +M
Sbjct: 183 VLMM 186
>gi|401679512|ref|ZP_10811439.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. ACP1]
gi|400219446|gb|EJO50314.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. ACP1]
Length = 689
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P + I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R V E P + + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYA-LRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVA 186
VA
Sbjct: 488 FKVA 491
>gi|374850303|dbj|BAL53295.1| ribonuclease PH [uncultured Aquificae bacterium]
Length = 253
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKVHGS 67
+R DGR+ +ELR IR +GS IE GNTKV+ V G P +K G
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPF----LKGKGQ 56
Query: 68 VLINFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
I +YSM +T R R R +T EI + +A+ A+ ++++ R+ I
Sbjct: 57 GWITAEYSMLPRATITRNIRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERT-FWID 115
Query: 123 VEVLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDI 171
+V+QADGG A + A +AL DA I P++++V + S + L+D+
Sbjct: 116 CDVIQADGGTRTASITGAFVALADAVIKLYSEGILSSTPIKDFVASVSVGMVSGQMLLDL 175
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMEL---SQKLHLDHLPRVLDCALKGCADI 222
++ E++ ++ V A SG+++ ++ + R+L AL G + +
Sbjct: 176 NYEEDSTASVDMNVVATG-SGRISEIQALGEENTFSREEFDRMLSLALAGISQL 228
>gi|88797478|ref|ZP_01113067.1| ribonuclease PH [Reinekea blandensis MED297]
gi|88779650|gb|EAR10836.1| ribonuclease PH [Reinekea sp. MED297]
Length = 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 22/241 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R GR+ +LR++ + ++GS + G+T+V+ A+V P + +K G
Sbjct: 1 MRPSGRQTDQLREVTLQRHFTKHAEGSVLVSFGDTQVICTASVDSGVP---RFMKGEGRG 57
Query: 69 LINFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +TG R R RG + +T EI + +++ AAI E+ + + I +
Sbjct: 58 WVTAEYGMLPRATGSRNQREAARGKQTGRTVEIGRLIGRSLRAAIDMELLGENTVTIDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA--GI---------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A +AL DA G+ P++ V A S + DT ++D+ +
Sbjct: 118 VIQADGGTRTASITGAFVALSDAINGMLAEGTLKKNPIKHNVAAVSVGIWQDTAVLDLDY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELS--QKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
E++ +L V G V + + + D L +LD A KG D+ I + A+
Sbjct: 178 AEDSTAETDLNVVLASNGGFVEIQGTAEGEPFMPDQLKAMLDLAEKGGRDLFEIQNRALT 237
Query: 232 Q 232
+
Sbjct: 238 E 238
>gi|303229604|ref|ZP_07316392.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
gi|302515729|gb|EFL57683.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica
ACS-134-V-Col7a]
Length = 689
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P + I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R V E P + + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYA-LRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVA 186
VA
Sbjct: 488 FKVA 491
>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
Length = 295
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS 61
D+L +RND R +E+R I + G + DGSAY G T+VL + GP+ ++
Sbjct: 36 DMLHSSSNYIRNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKLTKSSL 95
Query: 62 IKVHGSVLINFQYSMAVFSTGER------KTRPRGDRKTSEI--SLQLRQAVSAAIMSEV 113
++ SV ++ Y ++ F R K+ D K E SL L + + + I E
Sbjct: 96 NEIGLSVTVD--YRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREK 153
Query: 114 HPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPM 151
+ R ID ++ +++ DG A ++ +LAL DA I +
Sbjct: 154 YTRMSIDCYIYIIEDDGCALSAAISCLSLALCDAKIEI 191
>gi|429735686|ref|ZP_19269618.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429157177|gb|EKX99781.1| tRNA nucleotidyltransferase [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 248
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D RR +LR +R G GSA IE G+T+V+ A V +K G+ +
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYPAGSALIETGHTRVVCAATVEERV-PFFLKGSGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM + ER R RG + +T EI + +A+ A + ++ I I +VLQ
Sbjct: 62 AEYSMLPGAGTERTAREAMRGHQTGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA--------GI-PMREYVVACSASL-AGDTPLVDISHLEET 177
ADGG A + A +AL++A GI P+R+YV A S + A +TPL+DI + E++
Sbjct: 122 ADGGTRTASITGAFVALVEACATFYTKRGIFPVRDYVAAVSVGINAENTPLLDICYEEDS 181
>gi|146280858|ref|YP_001171011.1| ribonuclease PH [Pseudomonas stutzeri A1501]
gi|386019154|ref|YP_005937178.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
gi|166228304|sp|A4VGR8.1|RNPH_PSEU5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|145569063|gb|ABP78169.1| ribonuclease PH [Pseudomonas stutzeri A1501]
gi|327479126|gb|AEA82436.1| ribonuclease PH [Pseudomonas stutzeri DSM 4166]
Length = 240
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 23/228 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+TKV+ A++ P + +K G
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTASIETGVP---RFLKGQGQGW 59
Query: 70 INFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +TGER R RG + +T EI + +++ AA+ + + I +V
Sbjct: 60 LTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +A+IDA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVAVIDALKVLKKRGGLKGGDPVKQMIAAVSVGIYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGC 219
LE++ +L V G + V ++ H D L +L A G
Sbjct: 180 LEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFHADELNAMLALAHDGV 227
>gi|150864479|ref|XP_001383313.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
gi|149385735|gb|ABN65284.2| exosome exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 289
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 55/259 (21%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSVLINF------- 72
LR + G+ ++GS+Y+E GN + +VYGPRP+R I + SV F
Sbjct: 38 LRPFFLKTGIIENANGSSYLEVGNNIIEVSVYGPRPIRGSFIDRASFSVECKFLPFISQP 97
Query: 73 ----------QYSMAVFSTGERKTRPRGDRKTS----EISLQLRQAVSAAIMSEVHPRSQ 118
S A +T + G + +IS + ++ +I+ E +P+S
Sbjct: 98 NEHLYNNTSISASSAANTTNQTNVNVNGRTGLTSIEHKISSYIETSLLPSIVLEKYPKST 157
Query: 119 IDIFVEVLQAD---GGNFC---------ACVNAATLALIDAGIPMREYVVACSASLAGDT 166
ID+FV ++ D GG++ +NA+++AL+D+GI +++ V + A L D
Sbjct: 158 IDVFVTIISTDSSLGGSYSDTKMLSLVNWVLNASSVALVDSGIEVKDVVTSGVAHLQNDV 217
Query: 167 PLVDISHLEETLGGP-----------NLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCA 215
++D + ++E G N + + + G +E SQ +DHL
Sbjct: 218 LVLDPTEIQEKDEGSVSCVASFMNLRNDEIVGIWIEGDQTNLENSQ---VDHL------- 267
Query: 216 LKGCADIHAILDTAIKQHL 234
L GC D+ + I +
Sbjct: 268 LDGCNDMSKKVRANINSYF 286
>gi|415709494|ref|ZP_11463119.1| ribonuclease PH [Gardnerella vaginalis 6420B]
gi|388056166|gb|EIK79042.1| ribonuclease PH [Gardnerella vaginalis 6420B]
Length = 247
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR +R +GS IE GNT+V+ V PR R+ +
Sbjct: 8 IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 64
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 65 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 122
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ + A S + TP++
Sbjct: 123 CDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPML 182
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 183 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 233
>gi|402219270|gb|EJT99344.1| ribosomal protein S5 domain 2-like protein, partial [Dacryopinax
sp. DJM-731 SS1]
Length = 236
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 17/171 (9%)
Query: 16 RRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV--LINFQ 73
R +R I G+ + GSAY+E K++ +VYGPR + + G + L +
Sbjct: 29 REPAAIRPIFLHTGLVPAASGSAYLESPPLKLVVSVYGPRQQKPSTSSASGVLPSLSSSA 88
Query: 74 YS----------MAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
YS A F+T RK P + + EISL++R A++ A++ E +P+S ID+++
Sbjct: 89 YSEKGTLSVSLKFAPFATRVRKA-PLKETEDREISLRVRAALAPAVLLERYPKSSIDVYI 147
Query: 124 EVLQADGGN----FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVD 170
VL++D G CA + AA+ AL AG+ MR VV C+A+ G +D
Sbjct: 148 HVLESDQGQGDALVCAAITAASAALAHAGVEMRGLVVGCAAARVGGVTYLD 198
>gi|222100220|ref|YP_002534788.1| polynucleotide phosphorylase/polyadenylase [Thermotoga neapolitana
DSM 4359]
gi|254782743|sp|B9K8Y9.1|PNP_THENN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221572610|gb|ACM23422.1| Polyribonucleotide nucleotidyltransferase [Thermotoga neapolitana
DSM 4359]
Length = 707
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR+ +E+R I C +G+F ++ GSA +G T+ L V P+ + I G
Sbjct: 315 GIRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEG 374
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ F TGE K R R+ L R + E P + I + E+
Sbjct: 375 VKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYT-IRVVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P+R++V + L + L DI +E+ G
Sbjct: 434 LESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVILTDIIGMEDHYGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>gi|418293992|ref|ZP_12905893.1| ribonuclease PH [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065376|gb|EHY78119.1| ribonuclease PH [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 240
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TG+R R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRATGDRNQREATRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +A+IDA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVAVIDALKVLKKRGGLKSGDPIKQMIAAVSVGIYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + + ++ H D L +L A G ++ + A+
Sbjct: 182 DSAAETDLNVVMTDAGGFIEIQGTAEGAPFHPDELNAMLALAHDGVRELFELQRAAL 238
>gi|297242886|ref|ZP_06926824.1| ribonuclease PH [Gardnerella vaginalis AMD]
gi|296889097|gb|EFH27831.1| ribonuclease PH [Gardnerella vaginalis AMD]
Length = 253
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR +R +GS IE GNT+V+ V PR R+ +
Sbjct: 14 IRVDGRNVDELRPVRITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 70
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 71 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 128
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ + A S + TP++
Sbjct: 129 CDVLQADGGTRTASVTGAYVALVDALNWAEKNGHIRSAASVIKDSISAVSVGVINGTPML 188
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 189 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239
>gi|313892760|ref|ZP_07826341.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442691|gb|EFR61102.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. oral
taxon 158 str. F0412]
Length = 689
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGIETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R A+ I SE + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAER-ALVPVIPSEADFPYALRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAI-LDT 228
VA M++ L + L L+ A KG I I LDT
Sbjct: 488 FKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDT 535
>gi|431928884|ref|YP_007241918.1| RNAse PH [Pseudomonas stutzeri RCH2]
gi|431827171|gb|AGA88288.1| RNAse PH [Pseudomonas stutzeri RCH2]
Length = 240
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIETGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVE-- 124
+Y M +TGER R RG + +T EI + +++ AA+ MS++ + +FV+
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENT---LFVDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDIS 172
V+QADGG A + A +ALIDA G P+++ + A S + P++D+
Sbjct: 119 VIQADGGTRTASITGAMVALIDALKALKKRGGLKSGDPIKQMIAAVSVGIYQGEPVLDLD 178
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+LE++ +L V G + V ++ H + L +L A G + + A+
Sbjct: 179 YLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFHPEELNAMLALAHDGVRQLFELQRAAL 238
>gi|357058606|ref|ZP_09119454.1| ribonuclease PH [Selenomonas infelix ATCC 43532]
gi|355373562|gb|EHG20878.1| ribonuclease PH [Selenomonas infelix ATCC 43532]
Length = 248
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R D RR +LR +R G GSA IE G+T+V+ A V +K G+ +
Sbjct: 3 RRDLRRADQLRPVRIERGYQRYPAGSALIETGHTRVVCAATVEERV-PFFLKGSGTGWVT 61
Query: 72 FQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+YSM + ER R RG + +T EI + +A+ A + ++ I I +VLQ
Sbjct: 62 AEYSMLPGAGTERTAREAMRGHQTGRTQEIQRLIGRALRAVVDTKALGERTIHIDCDVLQ 121
Query: 128 ADGGNFCACVNAATLALIDA--------GI-PMREYVVACSASL-AGDTPLVDISHLEET 177
ADGG A + A +AL++A G+ P+R+YV A S + A +TPL+DI + E++
Sbjct: 122 ADGGTRTASITGAFVALVEACATFYTKRGVFPVRDYVAAVSVGINAENTPLLDICYEEDS 181
>gi|224014598|ref|XP_002296961.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968341|gb|EED86689.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 357
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 63/280 (22%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP--------------- 56
R+ R LR++ + SQS GS+ +E G+TK++ +V GPRP
Sbjct: 74 RSSKRGPRTLRQLHLARSILSQSTGSSLVECGHTKLIVSVRGPRPANCGGLNGGNGGGLI 133
Query: 57 ----------VRNKSIKVHGSVLINFQYSMAVFSTGERKTR------------------- 87
+R +++ H S+ +F S + STG R R
Sbjct: 134 CEVRYMPHIGIRMETLARH-SLSHDFSKSSSS-STGARIPRDSLSTSQDTSNLSSGGALC 191
Query: 88 -PRGDRKTSEISLQLRQAVS-AAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALI 145
P S +S +L++A++ A ++ + + I++FV+VLQ+DGG F A V A+LAL+
Sbjct: 192 APAAFLDESYLSHRLQEALAPAVVLMDNENKMCIEVFVQVLQSDGGVFGAAVMGASLALV 251
Query: 146 DAGIPMREYVVACSASLA-----GD----------TPLVDISHLEETLGGPNLTVAALPL 190
DAG+ MR+ V SA++ GD + D S E +T+A +P
Sbjct: 252 DAGVGMRDVVCGSSAAVMKVVEEGDGAKNGTKSKYVAIADPSEDEILQASGVVTIAIMPN 311
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+V V + K+ ++ ++ A +GC +H L +
Sbjct: 312 WREVTVWDQFGKMPVESSQEAMELAREGCVTMHKFLKKCV 351
>gi|422651171|ref|ZP_16713969.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330964252|gb|EGH64512.1| ribonuclease PH [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 240
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVLKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAAL 238
>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 285
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SVL 69
LR DGR E+R R +Q DGSA+ QG T V+AAV GP R + + G V
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCGVQVY 65
Query: 70 INFQYSMAVFSTGER----KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + +R + R R +E+ + L ++ A + + PR +++ V +
Sbjct: 66 VNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTI 125
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACS 159
L DG NA AL+DAG+P R V A S
Sbjct: 126 LADDGALLSVATNALMCALLDAGVPCRTTVAAVS 159
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| AAEL006819-PA [Aedes aegypti]
Length = 217
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 12/152 (7%)
Query: 19 HELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGS-VLINFQYSMA 77
+ LR + C L + ++SDGSA + QG T V+A+V GP V+ + + V S + I F+
Sbjct: 8 NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYFKPRSG 67
Query: 78 VFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACV 137
+ S +R ++ +AI++ +HPR+ I I ++ +Q GG +
Sbjct: 68 MGSVNDRLLESL-----------IKNTYESAILTGLHPRTAISIQLQEMQDQGGLVACAI 116
Query: 138 NAATLALIDAGIPMREYVVACSASLAGDTPLV 169
NA LAL+++GI M+ V A + L D +V
Sbjct: 117 NAVCLALMNSGIEMKFLVAAVHSVLREDGDIV 148
>gi|68535568|ref|YP_250273.1| ribonuclease PH [Corynebacterium jeikeium K411]
gi|68263167|emb|CAI36655.1| ribonuclease PH [Corynebacterium jeikeium K411]
Length = 256
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR ELR +R G S GS +E GNT+V+ A+V P + K G
Sbjct: 18 RADGRATDELRPVRITRGFTSNPAGSVLVEFGNTRVMCTASVEEGVP---RFKKDSGEGW 74
Query: 70 INFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y+M ST ER R +G K T EIS + +A+ AA+ + + ++I +V
Sbjct: 75 LTAEYAMLPASTHERMPRESMKGKVKGRTQEISRLVGRALRAAVDLKELGENTVNIDCDV 134
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +AL DA G P+R V A S + P +D+ +
Sbjct: 135 LQADGGTRTAAITGAYVALADALAVLQARGVVPGQPLRAPVAAVSVGIIDGVPCLDLPYE 194
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADIHAILDTAIKQ 232
E++ ++ VA V + + + L +LD A G ++ A+ Q
Sbjct: 195 EDSRADVDMNVAMTAEGRFVEIQGTGENAEFTREELNTLLDLAEGGLRELIEAQRAALAQ 254
Query: 233 HL 234
L
Sbjct: 255 EL 256
>gi|398850168|ref|ZP_10606875.1| ribonuclease PH [Pseudomonas sp. GM80]
gi|398249098|gb|EJN34489.1| ribonuclease PH [Pseudomonas sp. GM80]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEDLNAMLELAKKGMNEIFELQNAAL 238
>gi|311063782|ref|YP_003970507.1| ribonuclease PH Rph [Bifidobacterium bifidum PRL2010]
gi|313139586|ref|ZP_07801779.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
gi|390936246|ref|YP_006393805.1| ribonuclease PH [Bifidobacterium bifidum BGN4]
gi|421733570|ref|ZP_16172672.1| ribonuclease PH [Bifidobacterium bifidum LMG 13195]
gi|421735729|ref|ZP_16174625.1| ribonuclease PH [Bifidobacterium bifidum IPLA 20015]
gi|310866101|gb|ADP35470.1| Rph Ribonuclease PH [Bifidobacterium bifidum PRL2010]
gi|313132096|gb|EFR49713.1| RNase PH [Bifidobacterium bifidum NCIMB 41171]
gi|389889859|gb|AFL03926.1| ribonuclease PH [Bifidobacterium bifidum BGN4]
gi|407078462|gb|EKE51266.1| ribonuclease PH [Bifidobacterium bifidum LMG 13195]
gi|407296981|gb|EKF16467.1| ribonuclease PH [Bifidobacterium bifidum IPLA 20015]
Length = 254
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 14 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWR--KDSGLGW 71
Query: 70 INFQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + + + +QI I +V
Sbjct: 72 VTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDV 131
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A + A +AL+D A +++ V A S + TP++D+
Sbjct: 132 LQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLP 191
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 192 YIEDSQAMTDMNVA---MTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQA 245
>gi|66043483|ref|YP_233324.1| ribonuclease PH [Pseudomonas syringae pv. syringae B728a]
gi|257481756|ref|ZP_05635797.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|302189241|ref|ZP_07265914.1| ribonuclease PH [Pseudomonas syringae pv. syringae 642]
gi|410093795|ref|ZP_11290265.1| ribonuclease PH [Pseudomonas viridiflava UASWS0038]
gi|422223953|ref|ZP_16383782.1| ribonuclease PH [Pseudomonas avellanae BPIC 631]
gi|422589666|ref|ZP_16664327.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422596571|ref|ZP_16670852.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422607281|ref|ZP_16679282.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
gi|422616182|ref|ZP_16684888.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072]
gi|422631360|ref|ZP_16696547.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
gi|422643736|ref|ZP_16706875.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
gi|422666817|ref|ZP_16726684.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|422674479|ref|ZP_16733832.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273]
gi|422680044|ref|ZP_16738316.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|424065422|ref|ZP_17802897.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|424070102|ref|ZP_17807539.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|440723141|ref|ZP_20903508.1| ribonuclease PH [Pseudomonas syringae BRIP34876]
gi|440728395|ref|ZP_20908611.1| ribonuclease PH [Pseudomonas syringae BRIP34881]
gi|440743065|ref|ZP_20922384.1| ribonuclease PH [Pseudomonas syringae BRIP39023]
gi|443640952|ref|ZP_21124802.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B64]
gi|75503908|sp|Q4ZZY6.1|RNPH_PSEU2 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|63254190|gb|AAY35286.1| RNAse PH [Pseudomonas syringae pv. syringae B728a]
gi|330876506|gb|EGH10655.1| ribonuclease PH [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330890924|gb|EGH23585.1| ribonuclease PH [Pseudomonas syringae pv. mori str. 301020]
gi|330895695|gb|EGH27987.1| ribonuclease PH [Pseudomonas syringae pv. japonica str. M301072]
gi|330941124|gb|EGH44004.1| ribonuclease PH [Pseudomonas syringae pv. pisi str. 1704B]
gi|330957289|gb|EGH57549.1| ribonuclease PH [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330972206|gb|EGH72272.1| ribonuclease PH [Pseudomonas syringae pv. aceris str. M302273]
gi|330977343|gb|EGH77296.1| ribonuclease PH [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330986869|gb|EGH84972.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331009390|gb|EGH89446.1| ribonuclease PH [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|407992820|gb|EKG34370.1| ribonuclease PH [Pseudomonas avellanae BPIC 631]
gi|408001316|gb|EKG41633.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|408003395|gb|EKG43583.1| ribonuclease PH [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|409758820|gb|EKN44083.1| ribonuclease PH [Pseudomonas viridiflava UASWS0038]
gi|440360221|gb|ELP97505.1| ribonuclease PH [Pseudomonas syringae BRIP34876]
gi|440361888|gb|ELP99104.1| ribonuclease PH [Pseudomonas syringae BRIP34881]
gi|440376436|gb|ELQ13109.1| ribonuclease PH [Pseudomonas syringae BRIP39023]
gi|443280969|gb|ELS39974.1| Ribonuclease PH [Pseudomonas syringae pv. syringae B64]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAAL 238
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR + C L S DGSA + QGNT +A +YGP + K I S+ +++ +
Sbjct: 21 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSY-----IP 75
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
G K DR T + +++ AAI+ HP + I I ++ ++ GG +NA
Sbjct: 76 VKGPAKI---DDRMTE---MYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINA 129
Query: 140 ATLALIDAGIPMREYVVA 157
A LALI+AGIPM+ + A
Sbjct: 130 ACLALINAGIPMKFTIAA 147
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R+DGR +LR + C V ++ GSA QG+TKV AAVYGP+ K N
Sbjct: 5 RDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKK----------N 54
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
A + + + E + L++ + + + ++P + I V+ + DG
Sbjct: 55 ENPEKACVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGA 114
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASLAG-DTPLVDISHLEE 176
+NAA AL+DA IPM+ VA LA ++D + LEE
Sbjct: 115 LLVCAINAACAALVDARIPMKHLAVAICCCLADVGYVILDPTKLEE 160
>gi|301382581|ref|ZP_07230999.1| ribonuclease PH [Pseudomonas syringae pv. tomato Max13]
gi|302063052|ref|ZP_07254593.1| ribonuclease PH [Pseudomonas syringae pv. tomato K40]
gi|302133600|ref|ZP_07259590.1| ribonuclease PH [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAAL 238
>gi|206901853|ref|YP_002250868.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
gi|254782719|sp|B5YEB0.1|PNP_DICT6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|206740956|gb|ACI20014.1| polyribonucleotide nucleotidyltransferase [Dictyoglomus
thermophilum H-6-12]
Length = 693
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 19/234 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKVHGSV 68
R DGR+ +E+R + C +GV + GSA ++G T+VL+ V G + I+
Sbjct: 315 RVDGRKLNEIRPVSCEVGVLKRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEI---SLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
I+ Y+ FS GE K P K EI +L R + E P + I + EV
Sbjct: 375 YIH-HYNFPPFSVGEAK--PLRGPKRREIGHGALAERALLPLIPKEEEFPYT-IRVVSEV 430
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGD--TPLVDISHLEETLGGP 181
L ++G A V ++L+L+DAG+P++ +V + L GD L DI LE+ LGG
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGDRFEVLTDIQGLEDALGGM 490
Query: 182 NLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +A + ++L K L + + R L A + I I++ I Q
Sbjct: 491 DFKIAG--TRNGITAVQLDIKVDGLSYEIIERTLKQAKEARYQILDIMEKTIPQ 542
>gi|70733342|ref|YP_263117.1| ribonuclease PH [Pseudomonas protegens Pf-5]
gi|123652029|sp|Q4K3R6.1|RNPH_PSEF5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|68347641|gb|AAY95247.1| tRNA nucleotidyltransferase [Pseudomonas protegens Pf-5]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A +G +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMNEIFQLQQAAL 238
>gi|195428613|ref|XP_002062366.1| GK17502 [Drosophila willistoni]
gi|194158451|gb|EDW73352.1| GK17502 [Drosophila willistoni]
Length = 326
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 3/171 (1%)
Query: 22 RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFST 81
R R GV + GSAY+E GNTKV+A V P V S + +N + A F+T
Sbjct: 46 RTTFLRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEVVRASARRMNMGSLNCYVNYAAFAT 105
Query: 82 GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAAT 141
GE +T PR +++ S + L +A+ + Q+D+ V +++ DG +N
Sbjct: 106 GELETVPRREKQLSSM---LTKALEPVVCRNEFLNFQLDVRVLIIEDDGCLLSTAINCCG 162
Query: 142 LALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSG 192
+AL++ GI + + A +A + D ++ + + E L + ALP S
Sbjct: 163 VALVECGISTYDLITASTACIYRDHVFINPNAMVEELLWKHRAGHALPSSS 213
>gi|289625446|ref|ZP_06458400.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289646372|ref|ZP_06477715.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 2250]
gi|422581679|ref|ZP_16656820.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|298160675|gb|EFI01696.1| Ribonuclease PH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330866527|gb|EGH01236.1| ribonuclease PH [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGITELFELQRAAL 238
>gi|333898499|ref|YP_004472372.1| ribonuclease PH [Pseudomonas fulva 12-X]
gi|333113764|gb|AEF20278.1| Ribonuclease PH [Pseudomonas fulva 12-X]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 19/239 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V + V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRNYTKHAEGSVLVEFGDTKVICTVSVEQGV-PRFLKGQGQGWVT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TG+R R +G + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGDRNQREASKGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +AL+DA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALVDALKVMKKRGGLKGGDPLKQMIAAVSVGIYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
++ +L V G + V ++ L +L A +G ++ A+ A+ +
Sbjct: 182 DSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPAELNAMLALAQQGMGELFALQQAALAE 240
>gi|294791724|ref|ZP_06756872.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
gi|294456954|gb|EFG25316.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 6_1_27]
Length = 689
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS----IKVHG 66
+R DGR+ E+R I CR GV ++ GS +G T+VL V P+ K + V
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLN-VTTVAPLSEKQTIDGLGVET 367
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ FS GE R +R G R+ +L R V E P + + + EV
Sbjct: 368 EKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYA-LRLVSEV 426
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG
Sbjct: 427 LESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDM 486
Query: 182 NLTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAI-LDT 228
+ VA M++ L + L L+ A KG I I LDT
Sbjct: 487 DFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDT 535
>gi|342218776|ref|ZP_08711380.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
135-E]
gi|341588904|gb|EGS32276.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
135-E]
Length = 715
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGSVL 69
+R DGR+ +E+R + C +G+F+++ G+ +G T++L+ A P ++S + G +
Sbjct: 312 IRPDGRKVNEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPL---SESQHIDGVGM 368
Query: 70 -----INFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
Y+ FS GE K+ R G R+ L R E P + I +
Sbjct: 369 ETDRRYMHHYNFPSFSVGETKSSRGPGRREIGHGKLAERALTQVLPTEEEFPYA-IRVVS 427
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYV--VACSASLAGD--TPLVDISHLEETLG 179
EVL+++G + V +TLAL+DAG+P++ V VA GD T L DI +E+ LG
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPLQAPVSGVAMGLVTKGDDFTILTDIQGMEDALG 487
Query: 180 GPNLTVAALPLSGKVAV-MELSQK-LHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ VA + G A+ M++ K L + L + L A +G I + AI+Q
Sbjct: 488 DMDFKVAGT-MKGVTAIQMDIKIKGLRREILEQALQQAHEGRIHIMEKMLAAIQQ 541
>gi|339237159|ref|XP_003380134.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
gi|316977092|gb|EFV60250.1| exosome complex exonuclease MTR3 [Trichinella spiralis]
Length = 232
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 36 GSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINF-QYSMAVFSTGERKTRPRGDRKT 94
GSAYIE TK+L V GPR S G +L N + +++V KT PR R+
Sbjct: 36 GSAYIEMNKTKILCTVIGPREAHKSSEDSMGMLLANCGKLTVSVRFAPFAKT-PRLQRRR 94
Query: 95 SEISLQ--------LRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALID 146
E++L ++QA + ++ E +P+++I + + +LQ G CA +N T+AL+
Sbjct: 95 KEVALSEEQNLATLIQQAFDSVVLVERYPKAEIVLIISILQDSGNVLCASLNCCTMALVS 154
Query: 147 AGIPMREYVVACSASL 162
AGI + + + + S +L
Sbjct: 155 AGIEIYDLLTSASETL 170
>gi|310286881|ref|YP_003938139.1| rph ribonuclease PH [Bifidobacterium bifidum S17]
gi|309250817|gb|ADO52565.1| rph Ribonuclease PH [Bifidobacterium bifidum S17]
Length = 243
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 3 IRADGRVVDELRPVRITRHFTDVPEGSVLIECGNTRVMCTATFTPSVPRWR--KDSGLGW 60
Query: 70 INFQYSMAVFSTGERKTRP--RGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + + + +QI I +V
Sbjct: 61 VTAEYSMLPRATAERTDRESVRGKVGGRTHEISRLIGRCLRGVVDMKALGENQIQIDCDV 120
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A + A +AL+D A +++ V A S + TP++D+
Sbjct: 121 LQADGGTRTASITGAYVALVDAMRWAEQKRHIRSADRVLKDAVSAVSVGVINGTPMLDLP 180
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 181 YIEDSQAMTDMNVA---MTGSGDFIEIQGTAEHRPFNRAELNTLLDLAEKGNKELQA 234
>gi|294793588|ref|ZP_06758725.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|416998829|ref|ZP_11939498.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
gi|294455158|gb|EFG23530.1| polyribonucleotide nucleotidyltransferase [Veillonella sp. 3_1_44]
gi|333976982|gb|EGL77841.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula
ACS-068-V-Sch12]
Length = 689
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS----IKVHG 66
+R DGR+ E+R I CR GV ++ GS +G T+VL V P+ K + V
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLN-VTTVAPLSEKQTIDGLGVET 367
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ FS GE R +R G R+ +L R V E P + + + EV
Sbjct: 368 EKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYA-LRLVSEV 426
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG
Sbjct: 427 LESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDM 486
Query: 182 NLTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAI-LDT 228
+ VA M++ L + L L+ A KG I I LDT
Sbjct: 487 DFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDT 535
>gi|282848815|ref|ZP_06258208.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
gi|282581469|gb|EFB86859.1| polyribonucleotide nucleotidyltransferase [Veillonella parvula ATCC
17745]
Length = 689
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS----IKVHG 66
+R DGR+ E+R I CR GV ++ GS +G T+VL V P+ K + V
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLN-VTTVAPLSEKQTIDGLGVET 367
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ FS GE R +R G R+ +L R V E P + + + EV
Sbjct: 368 EKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYA-LRLVSEV 426
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG
Sbjct: 427 LESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDM 486
Query: 182 NLTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAI-LDT 228
+ VA M++ L + L L+ A KG I I LDT
Sbjct: 487 DFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDT 535
>gi|269797830|ref|YP_003311730.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
gi|269094459|gb|ACZ24450.1| 3' exoribonuclease [Veillonella parvula DSM 2008]
Length = 689
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS----IKVHG 66
+R DGR+ E+R I CR GV ++ GS +G T+VL V P+ K + V
Sbjct: 309 IRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLN-VITVAPLSEKQTIDGLGVET 367
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ FS GE R +R G R+ +L R V E P + + + EV
Sbjct: 368 EKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYA-LRLVSEV 426
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG
Sbjct: 427 LESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDM 486
Query: 182 NLTVAALPLSGKVAVMELS-QKLHLDHLPRVLDCALKGCADIHAI-LDT 228
+ VA M++ L + L L+ A KG I I LDT
Sbjct: 487 DFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDT 535
>gi|213970694|ref|ZP_03398819.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
gi|213924528|gb|EEB58098.1| ribonuclease ph rph [Pseudomonas syringae pv. tomato T1]
Length = 262
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 29/242 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN---KSIKVHGSV 68
R GR +LR IR ++GS +E G+TKV+ V V N + +K G
Sbjct: 25 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTV----SVENGVPRFLKGQGQG 80
Query: 69 LINFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV- 123
+ +Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V
Sbjct: 81 WLTAEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVD 138
Query: 124 -EVLQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVD 170
+V+QADGG A + A +AL DA G P+++ + A S + P++D
Sbjct: 139 CDVIQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAASVGMYQGEPVLD 198
Query: 171 ISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDT 228
+ +LE++ +L V G + V ++ + L +L A KG ++ +
Sbjct: 199 LDYLEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRA 258
Query: 229 AI 230
A+
Sbjct: 259 AL 260
>gi|429759714|ref|ZP_19292210.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica KON]
gi|429179304|gb|EKY20560.1| polyribonucleotide nucleotidyltransferase [Veillonella atypica KON]
Length = 689
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P + I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSEKQTIDGIGLETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R A+ I SE + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAER-ALVPVIPSEDEFPYALRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVA 186
VA
Sbjct: 488 FKVA 491
>gi|28867317|ref|NP_789936.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
gi|422659949|ref|ZP_16722369.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M302278]
gi|61216049|sp|Q88BE0.1|RNPH_PSESM RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|28850551|gb|AAO53631.1| ribonuclease PH [Pseudomonas syringae pv. tomato str. DC3000]
gi|331018562|gb|EGH98618.1| ribonuclease PH [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 240
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFEMQRAAL 238
>gi|239618017|ref|YP_002941339.1| polynucleotide phosphorylase/polyadenylase [Kosmotoga olearia TBF
19.5.1]
gi|197321135|gb|ACH68639.1| polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
gi|239506848|gb|ACR80335.1| Polyribonucleotide nucleotidyltransferase [Kosmotoga olearia TBF
19.5.1]
Length = 737
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HGS 67
LR DGR+ E+R I C L + ++ GSA +G T+ LA V P+ + I GS
Sbjct: 323 LRMDGRKTTEIRPITCELDILPRTHGSALFTRGETQSLATVTLGAPIDEQIIDTLLEEGS 382
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FSTGE ++ R G R+ L R A+ I E I + E+L
Sbjct: 383 KTFMLHYNFPPFSTGEVKRMRGPGRREIGHGHLAER-ALKNMIPPEEEFPYTIRVVSEIL 441
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGPN 182
+++G + A V + +LAL+ AG+P++ +V + L + L DI E+ G +
Sbjct: 442 ESNGSSSMATVCSGSLALMAAGVPIKRHVAGVAMGLIQEPDETVILTDILGNEDHYGDMD 501
Query: 183 LTVA 186
VA
Sbjct: 502 FKVA 505
>gi|443682349|gb|ELT86988.1| hypothetical protein CAPTEDRAFT_213173 [Capitella teleta]
Length = 108
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 40/44 (90%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYG 53
G R GR+ +ELR+I+CR+GV+SQ+DGSAYIEQGNTKVLAAV+G
Sbjct: 37 GFRVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHG 80
>gi|78044607|ref|YP_360578.1| polynucleotide phosphorylase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575939|sp|Q3ABA6.1|PNP_CARHZ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|77996722|gb|ABB15621.1| polyribonucleotide nucleotidyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 731
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVH 65
G+R DGR+ E+R I C +G+ ++ GS +G T+VL+ V G + + + +
Sbjct: 324 GIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILD-DLGIE 382
Query: 66 GSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
S Y+ +S GE R R G R+ +L R EV P + I I E
Sbjct: 383 ESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVFPYT-IRIVSE 441
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGD--TPLVDISHLEETLGG 180
VL+++G V +TLAL+DAG+P++ V + L GD L DI +E+ LG
Sbjct: 442 VLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTDIQGIEDALGD 501
Query: 181 PNLTVA 186
+ VA
Sbjct: 502 MDFKVA 507
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E+R + + + GSA++ GNTKV A++GPR ++ G +
Sbjct: 42 GRRRDGRLPEEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAGRSDLQDRGFIK 101
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
++++ S +++ G ++ L L QA+ + ++ E +P+S +++ L+ D
Sbjct: 102 VDYRGSPFF-----QRSSADGGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFLEED 156
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSA 160
GG A + A LAL DAG+ + + SA
Sbjct: 157 GGALAAALTCAGLALADAGVECHDIITGASA 187
>gi|154249089|ref|YP_001409914.1| polynucleotide phosphorylase/polyadenylase [Fervidobacterium
nodosum Rt17-B1]
gi|187610262|sp|A7HK24.1|PNP_FERNB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|154153025|gb|ABS60257.1| Polyribonucleotide nucleotidyltransferase [Fervidobacterium nodosum
Rt17-B1]
Length = 693
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 7/184 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
GLR DGR ++R I C +G+ ++ GS+ +G T+ L V P + I G
Sbjct: 317 GLRADGRGPKDIRPITCEVGLLPRTHGSSLFTRGETQSLGIVTLGSPAEEQIIDTLIEEG 376
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ Y+ FSTGE K R+ +AV A I E I + E+L
Sbjct: 377 TKRFILHYNFPPFSTGEVKPLRGPSRREIGHGHLAERAVKAIIPPEDEFPYVIRVVSEIL 436
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +A+LAL+DAG+P +++V + L + L DI LE+ G +
Sbjct: 437 ESNGSSSMATVCSASLALMDAGVPTKKHVAGVAMGLILEEGKGVILTDIIGLEDHWGDMD 496
Query: 183 LTVA 186
VA
Sbjct: 497 FKVA 500
>gi|254445470|ref|ZP_05058946.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
gi|198259778|gb|EDY84086.1| ribonuclease PH [Verrucomicrobiae bacterium DG1235]
Length = 252
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 26/246 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPR-PVRNKSIKVHGSVL 69
R DGR+ LR+I + + + GS + G+TKV+ A+ R P ++ V G L
Sbjct: 6 RPDGRKCDALREISFQADFAANATGSVLVSFGDTKVICGAMLEKRVPGWMRAQNVSGGWL 65
Query: 70 INFQYSMAVFSTGERK----TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+YSM +ST +RK +R + D + EI + +++ A I + P + + +V
Sbjct: 66 TA-EYSMLPYSTLDRKQRDASRGKQDGRGVEIQRLIGRSLRAVIDLQKLPGHTLWVDCDV 124
Query: 126 LQADGGNFCACVNAATLA-------LIDAGI----PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A LA LIDAG P R+ + A S + P++D+ ++
Sbjct: 125 LQADGGTRTASITGAYLAARLAVQKLIDAGTLKENPFRDSIAAVSVGIYEGEPVLDLPYI 184
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIHAILDTA 229
E+ + V ++GK +EL D L +++ A KG ++ ++
Sbjct: 185 EDRDASVDFNVV---MTGKGEFVELQGTGEEATFSEDELAKLIGLAKKGIKELSSMQAAF 241
Query: 230 IKQHLI 235
+ Q L+
Sbjct: 242 LTQRLL 247
>gi|392960721|ref|ZP_10326186.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans DSM
17108]
gi|421054521|ref|ZP_15517489.1| polyribonucleotide nucleotidyltransferase [Pelosinus fermentans B4]
gi|421057967|ref|ZP_15520714.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans B3]
gi|421066397|ref|ZP_15528010.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
A12]
gi|421071383|ref|ZP_15532503.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
A11]
gi|392440879|gb|EIW18539.1| polyribonucleotide nucleotidyltransferase [Pelosinus fermentans B4]
gi|392447299|gb|EIW24553.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
A11]
gi|392454618|gb|EIW31440.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans DSM
17108]
gi|392456251|gb|EIW33004.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
A12]
gi|392461793|gb|EIW37946.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans B3]
Length = 697
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA----AVYGPRPVRNKSIKVHG 66
+R DGR+ E+R I C +G+ +++ GSA +G T+ L G + + + V
Sbjct: 310 IRPDGRQLEEVRPISCDIGLLARTHGSALFTRGQTQALTITTLGAMGDEQILD-GLGVEE 368
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ FS GE R +R G R+ +L R A+ I SE+ I + E+
Sbjct: 369 SKRYMHHYNFPSFSVGETRPSRGPGRREIGHGALAER-ALVPVIPSEIEFPYTIRLVSEI 427
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L + + L DI LE+ LG
Sbjct: 428 LESNGSSSMASVCGSTLSLLDAGVPIKRPVSGVAMGLVKEGEDFSILTDIQGLEDALGDM 487
Query: 182 NLTVA 186
+ VA
Sbjct: 488 DFKVA 492
>gi|452746257|ref|ZP_21946080.1| ribonuclease PH [Pseudomonas stutzeri NF13]
gi|452009876|gb|EME02086.1| ribonuclease PH [Pseudomonas stutzeri NF13]
Length = 240
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 17/201 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +ALID AG P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGGLKAGDPVKQMIAAVSVGIYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAV 196
++ +L V G + V
Sbjct: 182 DSAAETDLNVVMTDAGGFIEV 202
>gi|307200434|gb|EFN80643.1| Exosome complex exonuclease MTR3 [Harpegnathos saltator]
Length = 215
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 43 GNTKVLAAVYGPRPVRNKS-IKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQL 101
GNTKV+ +V+ PR V NK+ V G + F++ A FS +RK + D + E SL L
Sbjct: 2 GNTKVICSVFDPREVPNKTGYCVQGELYCEFKF--APFSYRKRKMH-QQDAEEKEYSLVL 58
Query: 102 RQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS 161
++A+ A+ P Q+DI+ VL G A + AA+LAL DAG+PM V A +
Sbjct: 59 QRALEPAVCLSEFPNFQVDIYATVLDNGGSALAAAIMAASLALADAGVPMYSLVTASTIG 118
Query: 162 LAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ 201
+ +T LVD + EE+ + A P G + LSQ
Sbjct: 119 VYDNTYLVDPTDEEESFCCSKTVLDANPDHGIIVQAILSQ 158
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SVL 69
LR DGR E+R R +Q DGSA+ QG T V+AAV GP R + + G V
Sbjct: 6 LRRDGRGFREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCGVQVY 65
Query: 70 INFQYSMAVFSTGER----KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + +R + R R +E+ + L ++ A + + PR +++ + +
Sbjct: 66 VNRAVRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVLEVHITI 125
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACS 159
L DG NA AL+DAG+P R V A S
Sbjct: 126 LAEDGALLSVATNALMCALLDAGVPCRTTVAAVS 159
>gi|421075989|ref|ZP_15536991.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
JBW45]
gi|392525848|gb|EIW48972.1| Polyribonucleotide nucleotidyltransferase [Pelosinus fermentans
JBW45]
Length = 697
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA----AVYGPRPVRNKSIKVHG 66
+R DGR+ E+R I C +G+ +++ GSA +G T+ L G + + + V
Sbjct: 310 IRPDGRQLEEVRPISCDIGLLARTHGSALFTRGQTQALTITTLGAMGDEQILD-GLGVEE 368
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ FS GE R +R G R+ +L R A+ I SE+ I + E+
Sbjct: 369 SKRYMHHYNFPSFSVGETRPSRGPGRREIGHGALAER-ALVPVIPSEIEFPYTIRLVSEI 427
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + A V +TL+L+DAG+P++ V + L + + L DI LE+ LG
Sbjct: 428 LESNGSSSMASVCGSTLSLLDAGVPIKRPVSGVAMGLVKEGEDFSILTDIQGLEDALGDM 487
Query: 182 NLTVA 186
+ VA
Sbjct: 488 DFKVA 492
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M+ + G + ND +LR++RC S+ DGS QG+T V+AAV GP V+ +
Sbjct: 1 MNEIATDKGKVPND-----KLREMRCEFNPLSRCDGSVMYSQGSTVVIAAVLGPVEVKTQ 55
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAV-----SAAIMSEVHP 115
S+ + GS L E RP+ ++ ++R++V A++ E +P
Sbjct: 56 SLSIDGSYL-------------ECNYRPKA--GLPQVKERIRESVIQDVLELAVLGESYP 100
Query: 116 RSQIDIFVEVLQADGGNFCAC-VNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHL 174
RS++ + ++ L+ D G+ AC VNAA LA+I G+PM+ A + D +
Sbjct: 101 RSKMSVQIQELE-DRGSIDACAVNAACLAMIIGGLPMKYSFAAVQCIINEDGEYILDPDQ 159
Query: 175 EETL 178
ETL
Sbjct: 160 RETL 163
>gi|426382769|ref|XP_004057973.1| PREDICTED: exosome complex component MTR3, partial [Gorilla gorilla
gorilla]
Length = 208
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 19/172 (11%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ +F+ A F+ G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LVCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LVDISHLEE 176
G A + AA LAL DAG+ M + VV C SLA G P L+D + LEE
Sbjct: 153 DGGSALAAALTAAALALADAGVEMYDLVVGCGLSLARGPAPTWLLDPTRLEE 204
>gi|365862676|ref|ZP_09402416.1| ribonuclease PH [Streptomyces sp. W007]
gi|364007931|gb|EHM28931.1| ribonuclease PH [Streptomyces sp. W007]
Length = 245
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 103/240 (42%), Gaps = 34/240 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA + P+ + V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVVWAQGKKIVKAGRKPLTDTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GC D+ A+
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAAL 234
>gi|188996726|ref|YP_001930977.1| polynucleotide phosphorylase/polyadenylase [Sulfurihydrogenibium
sp. YO3AOP1]
gi|254782742|sp|B2V900.1|PNP_SULSY RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|188931793|gb|ACD66423.1| Polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 703
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR---NKSIKVHG 66
+R DGR+ E+R I ++GVF ++ GSA +G T+ V P +SI+ G
Sbjct: 310 NIRIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEA-G 368
Query: 67 SVLINF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
L F Y+ FSTGE K RP R+ +L R A+ I SE I +
Sbjct: 369 ETLKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAER-ALEPLIPSEEEFPYVIRVVS 427
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLG 179
++L+++G A V +LAL DAG+PM+++V + L L DI E+ LG
Sbjct: 428 DILESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLG 487
Query: 180 GPNLTVA 186
+ VA
Sbjct: 488 DMDFKVA 494
>gi|153956061|ref|YP_001396826.1| ribonuclease PH [Clostridium kluyveri DSM 555]
gi|219856397|ref|YP_002473519.1| hypothetical protein CKR_3054 [Clostridium kluyveri NBRC 12016]
gi|189043757|sp|A5N2V9.1|RNPH_CLOK5 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254808584|sp|B9DWL2.1|RNPH_CLOK1 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146348919|gb|EDK35455.1| RpH [Clostridium kluyveri DSM 555]
gi|219570121|dbj|BAH08105.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 248
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R DGR+ +++R ++ ++GS IE G+TKV+ A++ P +K G
Sbjct: 1 MRVDGRKCNQIRPVKITRNYTKYAEGSVLIENGDTKVICTASIEDKVP---PFLKGRGEG 57
Query: 69 LINFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
I +Y+M +T RK R R D +T EI + +A+ + + I + +
Sbjct: 58 WITCEYNMIPRATQVRKARDINRGRIDGRTMEIQRIIGRALRSVVDLRAIGEKTIWVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAG-----------IPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A ++ A +AL+DA P+R++V A S + DT ++D+ +
Sbjct: 118 VIQADGGTRTASISGAFVALVDAVNKLHKQNPFTIYPIRDFVSAVSVGIVNDTRMLDLCY 177
Query: 174 LEETLGGPNLTV 185
LE++ ++ V
Sbjct: 178 LEDSRAKVDMNV 189
>gi|392422858|ref|YP_006459462.1| ribonuclease PH [Pseudomonas stutzeri CCUG 29243]
gi|390985046|gb|AFM35039.1| ribonuclease PH [Pseudomonas stutzeri CCUG 29243]
Length = 240
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 19/237 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSIESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISHLE 175
ADGG A + A +A+IDA G P+++ + A S + P++D+ +LE
Sbjct: 122 ADGGTRTASITGAMVAVIDALKVLKKRGGLKSGDPIKQMIAAVSVGIYQGEPVLDLDYLE 181
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
++ +L V G + V ++ H + L +L A G + + A+
Sbjct: 182 DSAAETDLNVVMTDAGGFIEVQGTAEGAPFHPEELNAMLALAHDGVRQLFELQRAAL 238
>gi|156743859|ref|YP_001433988.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
gi|156235187|gb|ABU59970.1| ribonuclease PH [Roseiflexus castenholzii DSM 13941]
Length = 261
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+RNDGR +LR +R + + ++GSA IE GNT+VL A+V P + ++
Sbjct: 2 IRNDGRAPSDLRPVRISIDTYGYAEGSALIEMGNTRVLCTASVEEGVP---QWLRGQQRG 58
Query: 69 LINFQYSMAVFSTGERKTRPRG--DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ +Y++ ST +R R R +T EI + +A+ AA+ E + I +VL
Sbjct: 59 WVTAEYALLPRSTAQRTRRERNGLSGRTQEIQRLIGRALRAAVALEALDGFTVTIDCDVL 118
Query: 127 QADGGNFCACVNAATLALI-----------DAGIPMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + +AL A P+R V A SA G L+D+ + E
Sbjct: 119 QADGGTRTASITGGYVALALALHRLTAAGRLAANPIRRAVAAVSAGYVGGNALLDLDYSE 178
Query: 176 ETL 178
+++
Sbjct: 179 DSV 181
>gi|238019453|ref|ZP_04599879.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
gi|237864152|gb|EEP65442.1| hypothetical protein VEIDISOL_01322 [Veillonella dispar ATCC 17748]
Length = 689
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRN--KSIKVHGS 67
+R DGR+ E+R I CR GV ++ GS +G T+VL A P I +
Sbjct: 309 IRPDGRKLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVATVAPLSETQTIDGIGLETE 368
Query: 68 VLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
Y+ FS GE R +R G R+ +L R V E P + + + EVL
Sbjct: 369 KRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEEFPYA-LRLVSEVL 427
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGPN 182
+++G + A V +TL+L+DAG+P++ V + L T L DI +E+ LG +
Sbjct: 428 ESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGMEDALGDMD 487
Query: 183 LTVA 186
VA
Sbjct: 488 FKVA 491
>gi|374705158|ref|ZP_09712028.1| ribonuclease PH [Pseudomonas sp. S9]
Length = 240
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR++R ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLREVRITRNYTKHAEGSVLVEFGDTKVICTVSVESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TG+R R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGDRNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGEFTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + + +ALIDA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGSMVALIDALKMIKKRGGLKNGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
E++ +L V G + V ++ + L +L A KG ++ AI A+
Sbjct: 180 PEDSAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEQLNAMLALAQKGMDELFAIQQAAL 238
>gi|227875768|ref|ZP_03993896.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
gi|269977414|ref|ZP_06184386.1| ribonuclease PH [Mobiluncus mulieris 28-1]
gi|306819041|ref|ZP_07452758.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307700330|ref|ZP_07637370.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
gi|227843710|gb|EEJ53891.1| ribonuclease PH [Mobiluncus mulieris ATCC 35243]
gi|269934330|gb|EEZ90892.1| ribonuclease PH [Mobiluncus mulieris 28-1]
gi|304648234|gb|EFM45542.1| tRNA nucleotidyltransferase [Mobiluncus mulieris ATCC 35239]
gi|307614541|gb|EFN93770.1| tRNA nucleotidyltransferase [Mobiluncus mulieris FB024-16]
Length = 252
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 24/232 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGRR +LR + L S +G+ IE GNT+VL V + K G +
Sbjct: 1 MRKDGRRIDQLRNMAFHLDWVSTPEGAVLIEAGNTRVLCCASLSEGV-PRWRKDTGLGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+YSM +T R TR K T EIS + +++ A + + I+I +VL
Sbjct: 60 TAEYSMLPRATATRSTRESVKGKLGGRTQEISRLIGRSLRAGVDYTALGENTIEIDCDVL 119
Query: 127 QADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLE 175
QADGG A + A +AL A G P+++ V A S + +D+ + E
Sbjct: 120 QADGGTRTAAITGAWIALHRAIEEGKTSGFIPGEPLKDSVCAISVGIIDGEARLDLPYEE 179
Query: 176 ETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADI 222
+ ++ V ++G ++E+ + + L ++LD A GCAD+
Sbjct: 180 DVRAETDMNVV---MTGTGKLIEVQGTAEGEPFSREDLSKLLDLAQGGCADL 228
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSVL 69
LR DGR E+R R +Q DGSA+ QG T V+AAV GP R + K + V
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCNVQVY 65
Query: 70 INFQYSMAVFSTGER----KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + +R + R R +E+ + L ++ A + + PR +++ V +
Sbjct: 66 VNRAVRIPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTI 125
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVA 157
L DG NA AL+DAG+P R V A
Sbjct: 126 LADDGALLSVATNALMCALLDAGVPCRTTVAA 157
>gi|410866905|ref|YP_006981516.1| tRNA nucleotidyltransferase [Propionibacterium acidipropionici ATCC
4875]
gi|410823546|gb|AFV90161.1| tRNA nucleotidyltransferase [Propionibacterium acidipropionici ATCC
4875]
Length = 247
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 32/255 (12%)
Query: 4 LTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYG--PRPVRN 59
++E R DGR +LR++ + SQ++GS + G T VL A+V PR R
Sbjct: 1 MSELSSQTRIDGRALDQLREVTIKRSWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRRG 60
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHP 115
+ + +Y M +T +R R K T EIS + +++ A +
Sbjct: 61 SGLG-----WVTSEYEMLPRATNDRSQRESRKGKIGGRTHEISRLVGRSLRAVVDYRALG 115
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALID-----------AGIPMREYVVACSASLAG 164
+ I + +VLQADGG A + +AL D AG P+ V A SA + G
Sbjct: 116 ENTIVVDCDVLQADGGTRTASITGGFVALWDAIAWLRGRGSLAGEPLTGSVQAISAGIVG 175
Query: 165 DTPLVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGC 219
P++D+++ E++ ++ + +SG +E+ Q + L ++LD KGC
Sbjct: 176 GVPMLDLAYEEDSSADTDMNIV---MSGSGDFIEIQGTAEGQPFNRALLGQLLDLGTKGC 232
Query: 220 ADIHAILDTAIKQHL 234
A++ A + A+ L
Sbjct: 233 AELKAAQEAALGVEL 247
>gi|374295625|ref|YP_005045816.1| ribonuclease PH [Clostridium clariflavum DSM 19732]
gi|359825119|gb|AEV67892.1| ribonuclease PH [Clostridium clariflavum DSM 19732]
Length = 260
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 28/244 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R DGR LRK++ ++GS IE G+TKV+ A V P K+ G
Sbjct: 1 MRIDGRENSNLRKVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPSFKKN---TGEG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVH----PRSQIDIFVE 124
+ +YSM STG R R K + S ++++ + A+ S V+ I I +
Sbjct: 58 WVTAEYSMLPRSTGVRNPRDISKLKLNGRSQEIQRLIGRALRSVVNFNILGERVIIIDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + +AL+DA IP+ + V A S + GD ++D+ +
Sbjct: 118 VIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPITDMVAAVSVGIVGDEEMLDLCY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQK-----LHLDHLPRVLDCALKGCADIHAILDT 228
E++ ++ V ++G +EL + L ++LD A G ++ I
Sbjct: 178 EEDSNAIVDMNVV---MTGAGEFIELQATGEQAPFRGEQLNKLLDLAQGGIKELIEIQKE 234
Query: 229 AIKQ 232
A+ Q
Sbjct: 235 ALGQ 238
>gi|392401152|ref|YP_006437752.1| ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
gi|390532230|gb|AFM07959.1| Ribonuclease PH [Corynebacterium pseudotuberculosis Cp162]
Length = 247
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 31/236 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL----AAVYGPRPVRNKSIKVHGS 67
R DGR ++R ++ G + GS +E GNT+V+ A + PR R+ G
Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDS-----GE 65
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
+ +Y+M +T +R R RG K T EIS + +++ AA+ +SE+ + I+I
Sbjct: 66 GWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENT-INID 124
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P+++ V A S + +D+
Sbjct: 125 CDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDL 184
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELS---QKLHLDHLPRVLDCALKGCADIHA 224
+ E++ ++ V + +G+ ++ + D L R+LD A KGCA++ A
Sbjct: 185 PYEEDSRADVDMNV--IMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCAELVA 238
>gi|254389819|ref|ZP_05005043.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|197703530|gb|EDY49342.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 34/249 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A + + + I
Sbjct: 60 VTGEYSML-----PRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GCAD+ A+
Sbjct: 175 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAAL 234
Query: 226 LDTAIKQHL 234
+ A+ + +
Sbjct: 235 QNDALARTV 243
>gi|443706669|gb|ELU02598.1| hypothetical protein CAPTEDRAFT_197315 [Capitella teleta]
Length = 103
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 40/44 (90%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYG 53
G R GR+ +ELR+I+CR+GV+SQ+DGSAYIEQGNTKVLAAV+G
Sbjct: 37 GFRVHGRKPNELRRIQCRMGVYSQTDGSAYIEQGNTKVLAAVHG 80
>gi|294812846|ref|ZP_06771489.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|326441376|ref|ZP_08216110.1| ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
gi|294325445|gb|EFG07088.1| Ribonuclease PH [Streptomyces clavuligerus ATCC 27064]
Length = 248
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 34/249 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 5 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 61
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A + + + I
Sbjct: 62 VTGEYSML-----PRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDCKALGENTIV 116
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + TP
Sbjct: 117 LDCDVLQADGGTRTAAITGAYVALADAITWAREKKLVRAGRQPLTTTVAAVSVGIVDGTP 176
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GCAD+ A+
Sbjct: 177 LLDLCYEEDVRADTDMNVVCTGDGRFVEVQGTAEAEPFDRAELDALLDLAAGGCADLAAL 236
Query: 226 LDTAIKQHL 234
+ A+ + +
Sbjct: 237 QNDALARTV 245
>gi|262404946|ref|ZP_06081498.1| ribonuclease PH [Vibrio sp. RC586]
gi|262348785|gb|EEY97926.1| ribonuclease PH [Vibrio sp. RC586]
Length = 238
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGENVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 19 HELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMA 77
+ +R ++C V S++DGS QGNT V+A+VYGP + K + + +N++
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKP--- 62
Query: 78 VFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACV 137
TG RG K ++ + I++ +HPR+ + I V+ +Q G A +
Sbjct: 63 --KTGMPGVAERGKEKL------IKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAASI 114
Query: 138 NAATLALIDAGIPMREYVVA 157
NA LAL+D+G+P++ V A
Sbjct: 115 NAVCLALLDSGLPLQCLVAA 134
>gi|237757160|ref|ZP_04585586.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690677|gb|EEP59859.1| polyribonucleotide nucleotidyltransferase [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 613
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR---NKSIKVHGSV 68
R DGR+ E+R I ++GVF ++ GSA +G T+ V P +SI+ G
Sbjct: 312 RIDGRKPEEIRPIWIKVGVFPRNHGSAIFTRGQTQAFVTVTLGSPSEGQIEESIEA-GET 370
Query: 69 LINF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
L F Y+ FSTGE K RP R+ +L R A+ I SE I + ++
Sbjct: 371 LKRFMLHYNFPPFSTGEAKPPRPVSRREIGHGNLAER-ALEPLIPSEEEFPYVIRVVSDI 429
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGP 181
L+++G A V +LAL DAG+PM+++V + L L DI E+ LG
Sbjct: 430 LESNGSTSMATVCGGSLALFDAGVPMKKHVAGIAMGLIKSEDKFVVLSDILGDEDHLGDM 489
Query: 182 NLTVA 186
+ VA
Sbjct: 490 DFKVA 494
>gi|71032567|ref|XP_765925.1| exosome complex exonuclease Rrp41 [Theileria parva strain Muguga]
gi|68352882|gb|EAN33642.1| exosome complex exonuclease rrp41, putative [Theileria parva]
Length = 259
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 7/180 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGV-----FSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK- 63
GLR DGRR E R + G + DG + I QG KV + GP + K K
Sbjct: 36 GLRIDGRRKDEPRNTKLFFGSETSVDYLNYDGVSEILQGLNKVQVLIKGPSELEVKGAKN 95
Query: 64 VHGSVLINFQYSMAVFSTGERKTRPR-GDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
V+G + + + E+K + +R ++++ ++ I+S + S I IF
Sbjct: 96 VYGILEEKVDIHCEILLSTEKKVKNSPNERLIKDLAMAVKSTYQEMIISHCYKTSSISIF 155
Query: 123 VEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPN 182
+ V++ DG +NA LALIDAG+ +++ V + + S T L I +L PN
Sbjct: 156 INVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTVSYLDSTVLTGIHLFYYSLLDPN 215
>gi|406919637|gb|EKD57877.1| hypothetical protein ACD_57C00115G0004 [uncultured bacterium]
Length = 755
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 18/221 (8%)
Query: 2 DLLTE--YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN 59
D L E G R DGR E+R I ++ + ++ GS ++G T+VL+ V P
Sbjct: 323 DFLREKILAGQKRTDGRTPDEIRPITAKVSLLPRTHGSGLFQRGETQVLSIVTLGSPALE 382
Query: 60 KSIK-VHGSVLINF--QYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
+ I+ + G + Y+ FS GE R+ P G R+ +L + V ++V P
Sbjct: 383 QLIEHMEGENTKKYMHHYNFPPFSAGEVRRLGPPGRREIGHGALAEKALVPVLPSTDVFP 442
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-------L 168
+ I + EVL + G A +TLAL+DAG+P++E V S L D L
Sbjct: 443 YT-IRVVSEVLSSAGSTSMAASCGSTLALMDAGVPIKEPVAGISIGLVTDKKNPSKYVLL 501
Query: 169 VDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLP 209
DI++ E+ G + +A + + + LD +P
Sbjct: 502 TDIAYQEDAQGDMDFKIAGT----SKGITAIQMDIKLDGIP 538
>gi|357413188|ref|YP_004924924.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
gi|320010557|gb|ADW05407.1| ribonuclease PH [Streptomyces flavogriseus ATCC 33331]
Length = 245
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 109/252 (43%), Gaps = 40/252 (15%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS + G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAIAWAQGKKIVKHGRKPLTGTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADI 222
L+D+ + E+ ++ V +G +E+ ++ D L +LD A GCAD+
Sbjct: 175 LLDLCYEEDVRAETDMNVVC---TGDGRFVEVQGTAEAEPFDRDELNALLDLATAGCADL 231
Query: 223 HAILDTAIKQHL 234
+ + A+ + L
Sbjct: 232 AKLQEEALARTL 243
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSVLI 70
R DGR ++LR C ++ GSA QG+T VLAAVYGP+P R S+ +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + VHP + + ++V+ DG
Sbjct: 65 VWKPMTGQIGKQEK-----------EYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
+NA AL+ AGIP++ VA + D ++ D + EE
Sbjct: 114 SLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
>gi|153791339|ref|NP_001093283.1| mRNA transport regulator 3 [Bombyx mori]
gi|95103116|gb|ABF51499.1| mRNA transport regulator 3 [Bombyx mori]
Length = 268
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 19/242 (7%)
Query: 27 RLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKS-IKVHGSVLINFQYSMAVFSTGERK 85
R + SQ+ GSAY+E TKV+ +V+ PR + +++ + G + ++ A FS RK
Sbjct: 20 RTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKF--APFSCP-RK 76
Query: 86 TRPR-GDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLAL 144
RP D + +S+ LRQA+ A+ P QID+ + +L+ DG A +NAA LAL
Sbjct: 77 RRPYVPDVEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAINAAGLAL 136
Query: 145 IDAGIPMREYVVACSASLAGDTPLVDISHLEETLG------GPNLTVAALPLSGKVAVME 198
+A +PM + + +CS ++ G +D +EE + P + ++ LS + +
Sbjct: 137 ANAAVPMFDIITSCSVAVIGHQMFIDPPEIEEHIAKNSTEVNPGIITMSV-LSQLKQISD 195
Query: 199 LSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLGRKFQLGQLTGKK 256
+Q + ++ + +V++ LK C I + Q ++ V + K L T K+
Sbjct: 196 FTQIGSMDVECVTKVMEVLLKECEIIVPNI-----QRVLVVDVVKNFELKKHLEAETKKR 250
Query: 257 KE 258
+E
Sbjct: 251 EE 252
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 17 RGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSM 76
+ ++LR C ++ GSA QG+T VLAAVYGPRP K + L
Sbjct: 12 KANQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASL------- 64
Query: 77 AVFSTGERKTRPRG---DRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF 133
E +P+ R+ E + L++ + + + VHP + I ++V+ DG
Sbjct: 65 ------EVVWKPKTGQIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLL 118
Query: 134 CACVNAATLALIDAGIPMREYVVACSASLAGD-TPLVDISHLEE 176
+NA+ AL+ AGIPM+ VA + D + ++D S EE
Sbjct: 119 PCAINASCAALVFAGIPMKHLAVAIGCGVLPDGSVILDTSKAEE 162
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSVLI 70
R DGR ++LR C ++ GSA QG+T VLAAVYGP+P R S+ +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + VHP + + ++V+ DG
Sbjct: 65 VWKPMTGQIGKQEK-----------EYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
+NA AL+ AGIP++ VA + D ++ D + EE
Sbjct: 114 SLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
>gi|378823551|ref|ZP_09846173.1| tRNA nucleotidyltransferase [Sutterella parvirubra YIT 11816]
gi|378597634|gb|EHY30900.1| tRNA nucleotidyltransferase [Sutterella parvirubra YIT 11816]
Length = 245
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGRR E+R + + G ++GS I G+TKVL P ++ G +
Sbjct: 9 RADGRRTDEIRPVTFQRGFTKYAEGSVLIAMGDTKVLCTAS-VTPGVPAFLRGQGEGWVT 67
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y + STG R R RG + +T EI + +++ AA+ + I I +VLQ
Sbjct: 68 AEYGLLPRSTGTRCDREAARGKQSGRTQEIQRLIGRSLRAAVDRKRLGEWTIQIDCDVLQ 127
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG CA + A +AL DA P+ V A S + P++D++++E+
Sbjct: 128 ADGGTRCASITGAWVALRDAVDGMLEKGQIESDPIIAQVSAVSVGVVDGHPVLDLNYVED 187
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADIHAILDTAI 230
+ G ++ V G V + ++ + L ++ A KG A++ + A+
Sbjct: 188 SACGTDMNVVMTAAGGFVEIQGTAEGAPFTDEELTELIRLAKKGNAELARLQSEAL 243
>gi|336122959|ref|YP_004565007.1| ribonuclease PH [Vibrio anguillarum 775]
gi|335340682|gb|AEH31965.1| Ribonuclease PH [Vibrio anguillarum 775]
Length = 238
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R + R ++R I+ + ++GS +E GNTKVL A V P + +K G
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E P I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAYLVASGKLKKNPMKGHVAAVSVGILGENILCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADI 222
+E++ ++ V + + ++ H L +L A KG ADI
Sbjct: 178 VEDSAADTDMNVVMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADI 228
>gi|255567379|ref|XP_002524669.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223536030|gb|EEF37688.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 958
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 99/226 (43%), Gaps = 19/226 (8%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP---VRNKSIKVHG 66
G R DGRR E+R + C+ G GS+ +G+T+VL V P R +S+
Sbjct: 364 GFRVDGRRLDEVRPLFCKAGPLPILHGSSLFNRGDTQVLCTVTLGAPGDAQRLESLVGPP 423
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ YS FS E R +R+ +A+ A + E + I EV+
Sbjct: 424 TKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRINSEVM 483
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----------LVDISHLE 175
+DG A V ++AL+DAGIP+RE+V S L + L DI LE
Sbjct: 484 ASDGSTSMATVCGGSMALMDAGIPLREHVAGVSVGLVSEVDPSTGEIKDYRVLTDILGLE 543
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKG 218
+ LG + +A V ++L K + LD + LD ALKG
Sbjct: 544 DHLGDMDFKIAG--TRNGVTAIQLDIKPAGIPLDIICECLDHALKG 587
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRP-VRNKSIKVHGSVLI 70
R DGR ++LR C ++ GSA QG+T VLAAVYGP+P R S+ +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEV 64
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
++ E+ E + L++ + + + VHP + + ++V+ DG
Sbjct: 65 VWKPMTGQIGKQEK-----------EYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
+NA AL+ AGIP++ VA + D ++ D + EE
Sbjct: 114 SLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
>gi|323142160|ref|ZP_08076997.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413352|gb|EFY04234.1| polyribonucleotide nucleotidyltransferase [Phascolarctobacterium
succinatutens YIT 12067]
Length = 690
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI----KVHG 66
+R DGR+ E+R + C +G+ ++ GS+ +G T++L V P+R I
Sbjct: 305 IRPDGRQLDEVRPVSCEVGLLARPHGSSLFTRGQTQILN-VLALAPLREAQILDGLGAEE 363
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ +S GE K R G R+ +L R A+ I SE I + EV
Sbjct: 364 TKRYIHHYNFPPYSVGETKPLRSPGRREIGHGALAER-ALRPVIPSEEDFPYAIRLVSEV 422
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + V A+TL+L+DAG+P++ V + L D T L DI LE+ LG
Sbjct: 423 LESNGSSSMGSVCASTLSLMDAGVPIKAPVAGVAMGLVKDGEYFTILTDIQGLEDALGDM 482
Query: 182 NLTVA 186
+ VA
Sbjct: 483 DFKVA 487
>gi|288817498|ref|YP_003431845.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|384128268|ref|YP_005510881.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|288786897|dbj|BAI68644.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
gi|308751105|gb|ADO44588.1| ribonuclease PH [Hydrogenobacter thermophilus TK-6]
Length = 253
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 28/234 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKVHGS 67
+R DGR+ +ELR IR +GS IE GNTKV+ V G P +K G
Sbjct: 1 MRKDGRKPNELRPIRIVRDYLQHPEGSCLIEFGNTKVICTVSVQDGVPPF----LKGKGQ 56
Query: 68 VLINFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
I +YSM +T R R R +T EI + +A+ A+ ++++ R+ I
Sbjct: 57 GWITAEYSMLPRATITRNVRESVQGRISGRTHEIQRMIGRAMRTALDLTKIGERT-FWID 115
Query: 123 VEVLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDI 171
+V+QADGG A + A +A+ DA I P++++V + S L+D+
Sbjct: 116 CDVIQADGGTRTASITGAFVAIADAVIKLYNEGILSSTPIKDFVASVSVGTVNGQILLDL 175
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMEL---SQKLHLDHLPRVLDCALKGCADI 222
++ E++ ++ V A SG+++ ++ + R+L AL G + +
Sbjct: 176 NYEEDSTASVDMNVVATG-SGRISEIQALGEENTFSREEFDRMLSLALAGISQL 228
>gi|290968451|ref|ZP_06559990.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
type_1 str. 28L]
gi|290781447|gb|EFD94036.1| polyribonucleotide nucleotidyltransferase [Megasphaera genomosp.
type_1 str. 28L]
Length = 716
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGSVL 69
+R DGR+ E+R + C +G+F+++ G+ +G T++L+ A P +++ + G L
Sbjct: 312 IRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPL---SEAQHIDGVGL 368
Query: 70 -----INFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
Y+ FS GE R +R G R+ L R V E P + I +
Sbjct: 369 ETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVLPSEEEFPYA-IRVVS 427
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLG 179
EVL+++G + V +TLAL+DAG+P++ V + L T L DI +E+ LG
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGEDFTILTDIQGMEDALG 487
Query: 180 GPNLTVAALPLSGKVAVMELSQK-LHLDHLPRVLDCALKGCADIHAILDTAI 230
+ VA M++ K L + L + L A +G I + TAI
Sbjct: 488 DMDFKVAGTTKGVTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLTAI 539
>gi|335050267|ref|ZP_08543241.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
199-6]
gi|333757598|gb|EGL35158.1| polyribonucleotide nucleotidyltransferase [Megasphaera sp. UPII
199-6]
Length = 716
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLA-AVYGPRPVRNKSIKVHGSVL 69
+R DGR+ E+R + C +G+F+++ G+ +G T++L+ A P +++ + G L
Sbjct: 312 IRPDGRKVDEVRPVSCEVGLFARTHGTGLFTRGQTQILSFATLAPL---SEAQHIDGVGL 368
Query: 70 -----INFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
Y+ FS GE R +R G R+ L R V E P + I +
Sbjct: 369 ETDRRYMHHYNFPSFSVGETRSSRGPGRREIGHGKLAERALVQVLPSEEEFPYA-IRVVS 427
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLG 179
EVL+++G + V +TLAL+DAG+P++ V + L T L DI +E+ LG
Sbjct: 428 EVLESNGSSSMGSVCGSTLALMDAGVPLQAPVAGVAMGLVTKGEDFTILTDIQGMEDALG 487
Query: 180 GPNLTVAALPLSGKVAVMELSQK-LHLDHLPRVLDCALKGCADIHAILDTAI 230
+ VA M++ K L + L + L A +G I + TAI
Sbjct: 488 DMDFKVAGTTKGVTAIQMDIKIKGLRREILEQALQQAHEGRLHIMGKMLTAI 539
>gi|411004957|ref|ZP_11381286.1| ribonuclease PH [Streptomyces globisporus C-1027]
Length = 245
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ + V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GC D+ A+
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAAL 234
>gi|196230861|ref|ZP_03129722.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
gi|196225202|gb|EDY19711.1| ribonuclease PH [Chthoniobacter flavus Ellin428]
Length = 256
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 20/183 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN--KSIKVHGSVL 69
RNDGR+ +LR I + S GS + GNT+V+ + + N K KV G L
Sbjct: 3 RNDGRKNDQLRPISFTPNIAPHSTGSVLVAAGNTRVICSAMIEESIPNWMKFQKVPGGWL 62
Query: 70 INFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVE 124
+YSM +ST ERK R R D ++ EI + +++ A + + + PR+ + I +
Sbjct: 63 -TAEYSMLPYSTLERKQRDSAKGRIDGRSVEIQRLIGRSLRAVVDLDLLGPRT-LCIDCD 120
Query: 125 VLQADGGNFCACVNAATLA-------LIDAGI----PMREYVVACSASLAGDTPLVDISH 173
VLQADGG A + A +A LI+ + P+++ V A S + P++D+++
Sbjct: 121 VLQADGGTRTASITGACVAASLAVEKLIEKKLLTKSPIKQLVAAVSVGVVNGEPMLDLNY 180
Query: 174 LEE 176
LE+
Sbjct: 181 LED 183
>gi|239988038|ref|ZP_04708702.1| ribonuclease PH [Streptomyces roseosporus NRRL 11379]
gi|291445016|ref|ZP_06584406.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
gi|291347963|gb|EFE74867.1| ribonuclease PH [Streptomyces roseosporus NRRL 15998]
Length = 245
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ + V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVTWAQGKKIVKAGRKPLTDTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GC D+ A+
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGSLLDLATAGCVDLAAL 234
>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
Length = 235
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL-INFQYSMAV 78
+LR+++C+ S+SDGS QG T V+AAV GP V+ +++ + GS L N++ +
Sbjct: 13 KLREMQCKFNPLSRSDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAGL 72
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
P+ + E + +R + A++SE +PRS++ + V+ L+ G +N
Sbjct: 73 ---------PQVKERIREAA--IRDVLELALLSEAYPRSKMSLQVQELEDRGSTDACALN 121
Query: 139 AATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETL 178
+A LAL+ G+P++ A + V L ETL
Sbjct: 122 SACLALLIGGLPLKYSFAAVHCIINEQGEFVLDPELNETL 161
>gi|184200648|ref|YP_001854855.1| ribonuclease PH [Kocuria rhizophila DC2201]
gi|183580878|dbj|BAG29349.1| ribonuclease PH [Kocuria rhizophila DC2201]
Length = 244
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 20/234 (8%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR I G Q++GSA IE G T+VL V + +K G +
Sbjct: 1 MRADGRSVAELRPITITRGWSEQAEGSALIEFGGTRVLCTASLTEGV-PRWLKGEGRGWV 59
Query: 71 NFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T R R K T EIS + +++ + I E + + + +VL
Sbjct: 60 TAEYAMLPRATSTRSARESVKGKIGGRTHEISRLIGRSLRSIIDLEALGENTVVLDCDVL 119
Query: 127 QADGGNFCACVNAATLALIDA-------GI------PMREYVVACSASLAGDTPLVDISH 173
QADGG A + A +AL +A G+ P+ + V A S + P++D+ +
Sbjct: 120 QADGGTRTASITGAYVALAEAINWAHDNGVLKRRVNPLTDSVAAVSVGIIDGVPMLDLPY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAI 225
+E+ ++ V V V ++ D L +LD A+ GC+ + I
Sbjct: 180 VEDVRAETDMNVVVTGSGDFVEVQGTAEGAPFRRDELDALLDLAVAGCSQLAQI 233
>gi|365539848|ref|ZP_09365023.1| ribonuclease PH [Vibrio ordalii ATCC 33509]
Length = 238
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R + R ++R I+ + ++GS +E GNTKVL A V P + +K G
Sbjct: 1 MRPNDRAADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNATVEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E P I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMPEVMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLVASGKLKKNPMKGHVAAVSVGILGENILCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADI 222
+E++ ++ V + + ++ H L +L A KG ADI
Sbjct: 178 VEDSAADTDMNVVMTENGKMIEIQGTAEGEPFSHEELMDLLAVAKKGIADI 228
>gi|350584883|ref|XP_003481840.1| PREDICTED: exosome complex component MTR3-like [Sus scrofa]
Length = 254
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 32/224 (14%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-------------PVRNKSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS G R+ P G + E++L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSALLLE 152
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
G A + AA LAL DAGI M + VV C E +LTVA
Sbjct: 153 DGGSALAAALTAAALALADAGIEMYDLVVGCGX---------------EERAAASLTVAL 197
Query: 188 LPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
+P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 198 MPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCL 241
>gi|258620570|ref|ZP_05715607.1| ribonuclease PH [Vibrio mimicus VM573]
gi|262172697|ref|ZP_06040375.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|417822383|ref|ZP_12468983.1| ribonuclease PH [Vibrio cholerae HE48]
gi|424810044|ref|ZP_18235411.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449145443|ref|ZP_21776249.1| ribonuclease PH [Vibrio mimicus CAIM 602]
gi|258587085|gb|EEW11797.1| ribonuclease PH [Vibrio mimicus VM573]
gi|261893773|gb|EEY39759.1| ribonuclease PH [Vibrio mimicus MB-451]
gi|340049626|gb|EGR10540.1| ribonuclease PH [Vibrio cholerae HE48]
gi|342322682|gb|EGU18470.1| ribonuclease PH [Vibrio mimicus SX-4]
gi|449078982|gb|EMB49910.1| ribonuclease PH [Vibrio mimicus CAIM 602]
Length = 238
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMSEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|237797786|ref|ZP_04586247.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020636|gb|EGI00693.1| ribonuclease PH [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 240
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + + ++ + L +L A KG ++ + A+
Sbjct: 180 LEDSAAETDLNVVMTSEGGFIEIQGTAEGAPFQPEELNAMLALAKKGMNELFELQRAAL 238
>gi|124515183|gb|EAY56694.1| ribonuclease PH [Leptospirillum rubarum]
Length = 245
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R+DGR+ LR + + GV ++GS +E GNTKVL A+V P +K G
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVP---PFLKDQGKG 58
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ----IDIFVE 124
+ +Y M ST ER +R K S + ++++ + ++ S V + I I +
Sbjct: 59 WVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
VLQADGG A ++ +A+ A P+REY+ A S + P++D+ +
Sbjct: 119 VLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLCY 178
Query: 174 LEET 177
E++
Sbjct: 179 TEDS 182
>gi|409395691|ref|ZP_11246752.1| ribonuclease PH [Pseudomonas sp. Chol1]
gi|409119628|gb|EKM96004.1| ribonuclease PH [Pseudomonas sp. Chol1]
Length = 240
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+T+V+ A++ P + +K G
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTRVICTASIESGVP---RFLKGQGQGW 59
Query: 70 INFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +TGER R RG + +T EI + +++ AA+ + + I +V
Sbjct: 60 LTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ V A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVLKQRGGLKGGDPVKQMVAAVSVGMYQGQPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAV 196
LE++ +L V G + V
Sbjct: 180 LEDSAAETDLNVVMTDAGGFIEV 202
>gi|170719366|ref|YP_001747054.1| ribonuclease PH [Pseudomonas putida W619]
gi|226736926|sp|B1J4L4.1|RNPH_PSEPW RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|169757369|gb|ACA70685.1| ribonuclease PH [Pseudomonas putida W619]
Length = 240
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + +L A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMNEIFELQQVAL 238
>gi|410479724|ref|YP_006767361.1| Rnase [Leptospirillum ferriphilum ML-04]
gi|406774976|gb|AFS54401.1| Rnase [Leptospirillum ferriphilum ML-04]
Length = 287
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R+DGR+ LR + + GV ++GS +E GNTKVL A+V P +K G
Sbjct: 44 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVP---PFLKDQGKG 100
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ----IDIFVE 124
+ +Y M ST ER +R K S + ++++ + ++ S V + I I +
Sbjct: 101 WVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCD 160
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
VLQADGG A ++ +A+ A P+REY+ A S + P++D+ +
Sbjct: 161 VLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGEPVLDLCY 220
Query: 174 LEET 177
E++
Sbjct: 221 TEDS 224
>gi|251797391|ref|YP_003012122.1| polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
gi|247545017|gb|ACT02036.1| Polyribonucleotide nucleotidyltransferase [Paenibacillus sp. JDR-2]
Length = 698
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA-----------VYGPRPVRN 59
+R DGR E+R I C + + ++ GS +G T+ L+ + G P
Sbjct: 312 VRPDGRALEEIRPIECDVALLPRTHGSGLFTRGQTQALSICTLGALGDVQILDGISPEET 371
Query: 60 KSIKVHGSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ 118
K H Y+ FS GE R RP G R+ +L R A+S I SE
Sbjct: 372 KRFMHH--------YNFPPFSVGEARPLRPPGRREIGHGALGER-ALSKVIPSETEFPYT 422
Query: 119 IDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHL 174
I + EVL+++G A + A+TLA++DAG+P++ V + L D + L DI +
Sbjct: 423 IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKDGDHFSILSDIQGM 482
Query: 175 EETLGGPNLTVA 186
E+ LG + VA
Sbjct: 483 EDHLGDMDFKVA 494
>gi|419952505|ref|ZP_14468652.1| ribonuclease PH [Pseudomonas stutzeri TS44]
gi|387970550|gb|EIK54828.1| ribonuclease PH [Pseudomonas stutzeri TS44]
Length = 240
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R GR +LR IR ++GS +E G+T+V+ A++ P + +K G
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTRVICTASIESGVP---RFLKGQGQGW 59
Query: 70 INFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +TGER R RG + +T EI + +++ AA+ + + I +V
Sbjct: 60 LTAEYGMLPRATGERNQREAARGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLFIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ V A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVLKQRGGLKGGDPVKQMVAAVSVGMYQGQPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAV 196
LE++ +L V G + V
Sbjct: 180 LEDSAAETDLNVVMTDAGGFIEV 202
>gi|424868016|ref|ZP_18291784.1| Ribonuclease PH [Leptospirillum sp. Group II 'C75']
gi|206603687|gb|EDZ40167.1| Ribonuclease PH [Leptospirillum sp. Group II '5-way CG']
gi|387221611|gb|EIJ76152.1| Ribonuclease PH [Leptospirillum sp. Group II 'C75']
Length = 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R+DGR+ LR + + GV ++GS +E GNTKVL A+V P +K G
Sbjct: 2 MRSDGRKPENLRSLSIKTGVNLYAEGSVLVEMGNTKVLCTASVEEKVP---PFLKDQGKG 58
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ----IDIFVE 124
+ +Y M ST ER +R K S + ++++ + ++ S V + I I +
Sbjct: 59 WVTAEYGMLPRSTHERNSREAAKGKQSGRTQEIQRLIGRSLRSVVDTKKMGVRTITIDCD 118
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
VLQADGG A ++ +A+ A P+REY+ A S + P++D+ +
Sbjct: 119 VLQADGGTRTASISGGFVAMCLAFSELHKRGLMPEWPVREYLAAVSVGVVEGLPVLDLCY 178
Query: 174 LEET 177
E++
Sbjct: 179 TEDS 182
>gi|94499853|ref|ZP_01306389.1| ribonuclease PH [Bermanella marisrubri]
gi|94428054|gb|EAT13028.1| ribonuclease PH [Oceanobacter sp. RED65]
Length = 238
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R GR +LR ++ ++GS +E G+TKV+ A+V P ++ G
Sbjct: 1 MRPSGRALDQLRDVKITRNFTKHAEGSVLVEVGDTKVICNASVENKVP---PFLRGQGQG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M STG R R K T EIS + +++ AA+ E + I I +
Sbjct: 58 WVTAEYGMLPRSTGSRMIREAAKGKQGGRTVEISRLIGRSLRAAVDLEALGENSITIDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG CA + A +AL DA P++ + A S + ++D+ +
Sbjct: 118 VIQADGGTRCASITGACVALADAINSMIEAGTLKASPLKYMIAAVSVGVYEGQAILDLDY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELS--QKLHLDHLPRVLDCALKGCADIHAI 225
E++ +L V G V + + + + L +LD A KG A+I I
Sbjct: 178 PEDSNAETDLNVIMADNGGFVEIQGTAEGEPFQPEELTAMLDLAKKGLAEITEI 231
>gi|37928172|pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
R126a Mutant From Aquifex Aeolicus
Length = 255
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 25/245 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR+ +LR + + +GS I G TKV+ V N +K G I
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPN-WLKGKGQGWI 59
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEV 125
+YSM +T +R R R +T EI + +A+ A+ ++++ R+ I + +V
Sbjct: 60 TAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERT-IWVDCDV 118
Query: 126 LQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHL 174
+QADGG A + A +A+ DA I P++++V A S + D L+D++
Sbjct: 119 IQADGGTATAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 175 EETLGGPNLTVAALPLSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
E++ ++ V SG+ V M D L ++LD A KG I+ +++ K
Sbjct: 179 EDSAAQVDMNVVGTG-SGRLSEVHTMGEEYSFTKDELIKMLDLAQKG---INELIELQKK 234
Query: 232 QHLIK 236
++I+
Sbjct: 235 LYVIQ 239
>gi|343511497|ref|ZP_08748657.1| ribonuclease PH [Vibrio scophthalmi LMG 19158]
gi|343515605|ref|ZP_08752657.1| ribonuclease PH [Vibrio sp. N418]
gi|342797939|gb|EGU33574.1| ribonuclease PH [Vibrio scophthalmi LMG 19158]
gi|342798036|gb|EGU33669.1| ribonuclease PH [Vibrio sp. N418]
Length = 238
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R + R+ ++R I+ + ++GS +E GNTKVL A++ P +K G
Sbjct: 1 MRPNDRKADQIRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEENVP---HWMKGKGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ----IDIFVE 124
+ +Y M +T R R K ++++++ ++ ++ + V ++ I + +
Sbjct: 58 WVTAEYGMLPRATHTRNRREAASGKQGGRTMEIQRLIARSLRAVVDLKAMGEFMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A ++ A++AL DA PM+ +V A S L GD L D+ +
Sbjct: 118 VIQADGGTRTASISGASVALADAFQHLIEKGKLKKNPMKGHVAAVSVGLLGDDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLP--RVLDCALKGCADIHAILDTAIK 231
+E++ ++ V + V ++ HL +L+ A KG ADI A A+
Sbjct: 178 VEDSAADTDMNVVMTEDGRMIEVQGTAEGEPFTHLQLLALLESATKGVADIVAAQKAALA 237
Query: 232 Q 232
+
Sbjct: 238 E 238
>gi|294654809|ref|XP_456890.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
gi|199429165|emb|CAG84867.2| DEHA2A12914p [Debaryomyces hansenii CBS767]
Length = 302
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 14 DGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI-KVHGSVLINF 72
+ +R E+RK+ + G+ + ++GSAY+E G+T + +V+GPRP+R I + SV F
Sbjct: 51 NKKRNDEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKF 110
Query: 73 -----QYSMAVF----STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
Q + F + RP +IS L ++ I+ E +P+S IDIFV
Sbjct: 111 LPYVTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFV 170
Query: 124 EVL---------QADGGNFCACVNAATLALIDAGIPMREYVVACSASL 162
V+ + +N ++LAL+D+GI +++ V + +L
Sbjct: 171 SVISTNSNPNSNSSLLNLINWIINCSSLALVDSGIELKDIVTSGQVNL 218
>gi|374340410|ref|YP_005097146.1| polyribonucleotide nucleotidyltransferase [Marinitoga piezophila
KA3]
gi|372101944|gb|AEX85848.1| polyribonucleotide nucleotidyltransferase [Marinitoga piezophila
KA3]
Length = 720
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HGSV 68
R DGR+ E+R I C +G+F ++ GSA +G T+ L V +P + I G
Sbjct: 321 RADGRKIDEIRPITCEVGLFEKTHGSALFTRGETQSLGVVTLGQPFDVQIIDTVFEEGEK 380
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
Y+ +STGE K R+ L R A+ + SE I + E+L++
Sbjct: 381 RFMLHYNFPPYSTGEVKGLRLSRREIGHGHLAER-ALKNLLPSEEEFPYIIRVVSEILES 439
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGPNLT 184
+G + A V + +LAL+DAG+PM +++ + L + L DI +E+ LG +
Sbjct: 440 NGSSSMATVCSGSLALMDAGVPMPKHIAGVAMGLIFEDDKFVVLTDILGMEDHLGDMDFK 499
Query: 185 VA 186
V
Sbjct: 500 VT 501
>gi|305681138|ref|ZP_07403945.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
gi|305659343|gb|EFM48843.1| tRNA nucleotidyltransferase [Corynebacterium matruchotii ATCC
14266]
Length = 242
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR IR G + GS IE GNT+V+ + V + K G +
Sbjct: 6 RADGRAPDQLRPIRITRGFTTNPAGSVLIEYGNTRVMCTASAEQGV-PRFKKDSGEGWLT 64
Query: 72 FQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y+M +T ER R RG K T EIS + +++ AAI + + I+I +VLQ
Sbjct: 65 AEYAMLPAATHERMPRESMRGKVKGRTHEISRLVGRSLRAAIDLTLLGENTINIDCDVLQ 124
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +AL DA G P+ + A S + +D+ + E+
Sbjct: 125 ADGGTRTASITGAYIALADAIAYLTAQGVVPGNPLLPPIAAVSVGIIDGHVCLDLPYEED 184
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADI 222
+ +L V + GK ++ + + D L +LD A KGC ++
Sbjct: 185 SRADVDLNV-IMTQEGKFVEIQGTAEHNTFSRDELNAMLDYAEKGCKEL 232
>gi|226942447|ref|YP_002797520.1| ribonuclease PH [Azotobacter vinelandii DJ]
gi|259494117|sp|C1DI48.1|RNPH_AZOVD RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|226717374|gb|ACO76545.1| ribonuclease PH [Azotobacter vinelandii DJ]
Length = 239
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR H+LR IR ++GS +E G+T+V+ V V + +K G +
Sbjct: 3 RPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVSAEAGV-PRFLKGQGKGWLT 61
Query: 72 FQYSMAVFSTGER----KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER +R R +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +AL+DA G P+++ V A S + P++D+ + E+
Sbjct: 122 ADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPED 181
Query: 177 TLGGPNLTVAALPLSGKVAV 196
+ +L V G + V
Sbjct: 182 SDAETDLNVVMTDAGGFIEV 201
>gi|338813338|ref|ZP_08625467.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
gi|337274697|gb|EGO63205.1| polynucleotide phosphorylase/polyadenylase [Acetonema longum DSM
6540]
Length = 696
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 19/189 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVHG 66
+R DGR+ E+R I C +GV +++ GS +G T+VL G + + + V
Sbjct: 310 IRPDGRKLDEVRPISCEVGVLARTHGSGLFTRGQTQVLTVTTLGAIGDEQILD-GLGVEE 368
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQ----IDI 121
S Y+ +S GE R +R G R+ +L R A++ + P S+ I +
Sbjct: 369 SKRYIHHYNFPSYSVGETRPSRGPGRREIGHGALAER-----ALVPVIPPESEFPYTIRL 423
Query: 122 FVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEET 177
EVL+++G + V +TL+L+DAG+P++ V + L D T L DI +E+
Sbjct: 424 VSEVLESNGSSSMGSVCGSTLSLMDAGVPIKSPVSGVAMGLVKDGEYYTILTDIQGMEDA 483
Query: 178 LGGPNLTVA 186
LG + VA
Sbjct: 484 LGDMDFKVA 492
>gi|326779081|ref|ZP_08238346.1| ribonuclease PH [Streptomyces griseus XylebKG-1]
gi|326659414|gb|EGE44260.1| ribonuclease PH [Streptomyces griseus XylebKG-1]
Length = 245
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ + V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GC D+ A+
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAAL 234
>gi|395236506|ref|ZP_10414695.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|423350611|ref|ZP_17328264.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|394488394|emb|CCI82783.1| ribonuclease PH [Turicella otitidis ATCC 51513]
gi|404387376|gb|EJZ82496.1| ribonuclease PH [Turicella otitidis ATCC 51513]
Length = 247
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 107/231 (46%), Gaps = 30/231 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY----GPRPVRNKSIKVHGS 67
R DGR ELR +R G + GS E GNTKVL A PR R+ G
Sbjct: 8 RADGRATSELRPVRLTRGFTTNPAGSVLAEFGNTKVLCAASIQEGVPRFKRDS-----GE 62
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
+ +Y+M ST ER R RG K T EIS + +++ AA+ +SE+ + I +
Sbjct: 63 GWLTAEYAMLPASTHERSPRESMRGKVKGRTHEISRLVGRSLRAAVDLSELG-ENTIQLD 121
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P++E V A S + +D+
Sbjct: 122 CDVLQADGGTRTAAITGAYVALADAIAELQSRGVVPGTPLKEPVAAVSVGIIDGVACLDL 181
Query: 172 SHLEETLGGPNLTVAALPLSGK-VAVMELSQKLHLD--HLPRVLDCALKGC 219
+ E++ ++ V + SG+ V + + D L +LD A GC
Sbjct: 182 PYEEDSRAEVDMNV-VMTASGRFVEIQGTGEDGTFDRGQLGELLDLAAGGC 231
>gi|148270567|ref|YP_001245027.1| polynucleotide phosphorylase/polyadenylase [Thermotoga petrophila
RKU-1]
gi|187611330|sp|A5IMM8.1|PNP_THEP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|147736111|gb|ABQ47451.1| Polyribonucleotide nucleotidyltransferase [Thermotoga petrophila
RKU-1]
Length = 708
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR+ E+R I C +G+F ++ GSA +G T+ L V P+ + I G
Sbjct: 315 GIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEG 374
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ F TGE K R R+ L R + E P + I + E+
Sbjct: 375 VKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYT-IRVVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++++V + L + L DI +E+ G
Sbjct: 434 LESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDHYGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80
LR + C + + S+SDGS QG+T ++A + GP V+++ + + + I Y+
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKM-AYDKLSIEVTYTPL--- 67
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
TG K R I +R++ +AI+ +HP + I I ++ +Q GG +NA+
Sbjct: 68 TGPAKVDDRL------IETYIRESCESAILVSLHPNTMICINLQEVQDSGGLLACAINAS 121
Query: 141 TLALIDAGIPMREYVVACSASLAGDT 166
LALI++G+ M+ + A S + +T
Sbjct: 122 CLALINSGLSMKFTIAAVSCMIEKET 147
>gi|398986537|ref|ZP_10691603.1| ribonuclease PH [Pseudomonas sp. GM24]
gi|399016846|ref|ZP_10719057.1| ribonuclease PH [Pseudomonas sp. GM16]
gi|398104595|gb|EJL94727.1| ribonuclease PH [Pseudomonas sp. GM16]
gi|398152078|gb|EJM40607.1| ribonuclease PH [Pseudomonas sp. GM24]
Length = 240
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSALGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A +G +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEDLNAMLELAKQGMNEIFELQKAAL 238
>gi|15644097|ref|NP_229146.1| polynucleotide phosphorylase/polyadenylase [Thermotoga maritima
MSB8]
gi|170289273|ref|YP_001739511.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. RQ2]
gi|418045402|ref|ZP_12683497.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
gi|81553535|sp|Q9X166.1|PNP_THEMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|226704827|sp|B1LBY0.1|PNP_THESQ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4981905|gb|AAD36416.1|AE001789_1 polynucleotide phosphorylase [Thermotoga maritima MSB8]
gi|170176776|gb|ACB09828.1| Polyribonucleotide nucleotidyltransferase [Thermotoga sp. RQ2]
gi|351676287|gb|EHA59440.1| Polyribonucleotide nucleotidyltransferase [Thermotoga maritima
MSB8]
Length = 708
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR+ E+R I C +G+F ++ GSA +G T+ L V P+ + I G
Sbjct: 315 GIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEG 374
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ F TGE K R R+ L R + E P + I + E+
Sbjct: 375 VKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYT-IRVVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++++V + L + L DI +E+ G
Sbjct: 434 LESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDHYGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>gi|42524118|ref|NP_969498.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
gi|61215946|sp|Q6MJR9.1|RNPH_BDEBA RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|39576326|emb|CAE80491.1| ribonuclease PH [Bdellovibrio bacteriovorus HD100]
Length = 243
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 25/249 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR +LR I+ V ++GSA +E G TKVL A Y + + G+
Sbjct: 1 MRADGRLFDQLRNIKITPNVSEYAEGSAIVEFGRTKVLCTATYESKA--PSWLLGTGAGW 58
Query: 70 INFQYSMAVFSTGERKTRPRGDR-----KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
I +Y M ST TR R D+ +T EIS + +++ AA+ + QI I +
Sbjct: 59 ITAEYGMLPRST---HTRIRRDKSMTGGRTQEISRLIGRSLRAAVDLKQLGEKQIIIDCD 115
Query: 125 VLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISH 173
VL ADGG A V +AL A +P+ YV A S L L+D+++
Sbjct: 116 VLNADGGTRTASVTGGFVALALALKKLHAVSEIKTLPLINYVSAISVGLHEGQILLDLNY 175
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHL--DHLPRVLDCALKGCADIHAILDTAIK 231
E++ G ++ V V ++ + D L +++D A KGC ++ I ++
Sbjct: 176 DEDSAIGTDMNFVMTDKGQFVEVQGTAEHVPFTRDQLFKMMDVAEKGCRELF-IHQASVM 234
Query: 232 QHLIKVAGA 240
+ K+AGA
Sbjct: 235 GEIYKIAGA 243
>gi|15606253|ref|NP_213631.1| ribonuclease PH [Aquifex aeolicus VF5]
gi|6094114|sp|O67069.1|RNPH_AQUAE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|37928163|pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
From Aquifex Aeolicus
gi|2983451|gb|AAC07032.1| RNase PH [Aquifex aeolicus VF5]
Length = 255
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 25/245 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR+ +LR + + +GS I G TKV+ V N +K G I
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPN-WLKGKGQGWI 59
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEV 125
+YSM +T +R R R +T EI + +A+ A+ ++++ R+ I + +V
Sbjct: 60 TAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERT-IWVDCDV 118
Query: 126 LQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHL 174
+QADGG A + A +A+ DA I P++++V A S + D L+D++
Sbjct: 119 IQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 175 EETLGGPNLTVAALPLSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
E++ ++ V SG+ V M D L ++LD A KG I+ +++ K
Sbjct: 179 EDSAAQVDMNVVGTG-SGRLSEVHTMGEEYSFTKDELIKMLDLAQKG---INELIELQKK 234
Query: 232 QHLIK 236
++I+
Sbjct: 235 LYVIQ 239
>gi|294629581|ref|ZP_06708141.1| ribonuclease PH [Streptomyces sp. e14]
gi|292832914|gb|EFF91263.1| ribonuclease PH [Streptomyces sp. e14]
Length = 241
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 40/250 (16%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS + G+T+VL A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLVSFGDTRVLCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +Y+M R T RGDR +T EIS + +++ A I + + +
Sbjct: 60 VTAEYAML-----PRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + G P
Sbjct: 115 LDCDVLQADGGTRTAAITGAFVALADAVAWAQGKKLIKTGRQPLTGTVSAVSVGIVGGVP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADI 222
L+D+ + E+ ++ V +G +E+ ++ D L +LD A+ GC D+
Sbjct: 175 LLDLCYEEDVRADTDMNVVC---TGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCTDL 231
Query: 223 HAILDTAIKQ 232
AI A+++
Sbjct: 232 AAIQRAALEK 241
>gi|182438431|ref|YP_001826150.1| ribonuclease PH [Streptomyces griseus subsp. griseus NBRC 13350]
gi|226736942|sp|B1VVV6.1|RNPH_STRGG RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|178466947|dbj|BAG21467.1| putative ribonuclease PH [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 245
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR + G ++GS I G+TKV A+V P K G
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDREAVRGKIGGRTHEISRLIGRSLRAVIDCKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ + V A S + TP
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAI 225
L+D+ + E+ ++ V V V ++ D L +LD A GC D+ A+
Sbjct: 175 LLDLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEGAPFDRKELGALLDLATAGCVDLAAL 234
>gi|167382557|ref|XP_001736162.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901601|gb|EDR27679.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 227
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +E+R ++GV S + GS I++ N+KV+++V IK I+
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV---------QIKTQDES-ID 56
Query: 72 FQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGG 131
F++++ V +RK E+ L Q++++ I E + I + V V++ DG
Sbjct: 57 FEFTVKVTFAQFENNSLFNNRKEIELQEILTQSLTSRINQESNKGKIICLQVFVMEQDGS 116
Query: 132 NFCACVNAATLALIDAGIPMREYVVACSASL--AGDTPLVDISHLEETLGGPNLTVAALP 189
+ +N+++LAL DA I M ++A + + +VD + EE ++ +A +P
Sbjct: 117 VEDSIINSSSLALFDAEIQMDSIIIATTVVKLPIYNQVIVDPTAFEEEKKEGSVLIACIP 176
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+ + + +S L + L AL C ++ ++ I+ +K+
Sbjct: 177 SNSSITQIYMSGVLDPQDISSCLSIALDSCWKLNKEIELIIQSKKVKM 224
>gi|229818320|ref|ZP_04448601.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784190|gb|EEP20304.1| hypothetical protein BIFANG_03620 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 254
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVLI 70
R DGR+ ELR +R +GS IE GNT+V+ A + R + K G +
Sbjct: 15 RADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTAGVPRWR--KDSGLGWV 72
Query: 71 NFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+Y+M +T ER R RG +T EIS + + + + + + I I +VL
Sbjct: 73 TAEYAMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKALGENMIQIDCDVL 132
Query: 127 QADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDISH 173
QADGG A V A +AL+D A + + V A S + TP++D+ +
Sbjct: 133 QADGGTRTASVTGAYVALVDALDWAEKHHHIRSAKKVLTDCVSAVSVGVISGTPMLDLPY 192
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
+E++ ++ VA ++G A +EL + D L +LD A KG ++ A
Sbjct: 193 VEDSAAMTDMNVA---MTGSGAFIELQGTAEHRPFTRDELGTLLDLAEKGNKELQA 245
>gi|403253711|ref|ZP_10920012.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
gi|402811245|gb|EJX25733.1| polynucleotide phosphorylase/polyadenylase [Thermotoga sp. EMP]
Length = 708
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR+ E+R I C +G+F ++ GSA +G T+ L V P+ + I G
Sbjct: 315 GIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEG 374
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ F TGE K R R+ L R + E P + I + E+
Sbjct: 375 VKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPYT-IRVVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++++V + L + L DI +E+ G
Sbjct: 434 LESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDHYGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>gi|297194142|ref|ZP_06911540.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
gi|197721967|gb|EDY65875.1| ribonuclease PH [Streptomyces pristinaespiralis ATCC 25486]
Length = 244
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR + G ++GS I G+TKV V + K G +
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASFTEGV-PRWRKGSGEGWVT 61
Query: 72 FQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+YSM R T RGDR +T EIS + +++ A I + + + +
Sbjct: 62 SEYSML-----PRSTNTRGDRESVRGKIGGRTHEISRLIGRSLRAVIDYKALGENTVVLD 116
Query: 123 VEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTPLV 169
+VLQADGG A + A +AL DA P+ V A S + TPL+
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAIAWAQAKKIVKPGRKPLTGTVAAVSVGIVDGTPLL 176
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAILD 227
D+ + E+ ++ V V V ++ D L +LD A GCAD+ A+
Sbjct: 177 DLCYEEDVRAETDMNVVCTGDGRFVEVQGTAEAEPFDRKELNALLDLATGGCADLAALQA 236
Query: 228 TAIKQ 232
A+ Q
Sbjct: 237 EALGQ 241
>gi|258625880|ref|ZP_05720755.1| ribonuclease PH [Vibrio mimicus VM603]
gi|258581844|gb|EEW06718.1| ribonuclease PH [Vibrio mimicus VM603]
Length = 238
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|302389789|ref|YP_003825610.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
gi|302200417|gb|ADL07987.1| polyribonucleotide nucleotidyltransferase [Thermosediminibacter
oceani DSM 16646]
Length = 702
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 11/186 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVH 65
G+R DGR+ E+R I C +G+ ++ GS +G T+VL G + + +++
Sbjct: 309 GIRPDGRKSTEIRPISCEVGILPRTHGSGLFTRGQTQVLTVATLGALGDVQILD-GLELE 367
Query: 66 GSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
S Y+ +STGE R R G R+ +L R E P + I + E
Sbjct: 368 ESKRFMHHYNFPPYSTGETRMLRGPGRREIGHGALAERALEPMIPPEETFPYT-IRLVSE 426
Query: 125 VLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGG 180
VL ++G A V +TLAL+DAG+P++ V + L T L DI +E+ LG
Sbjct: 427 VLSSNGSTSMASVCGSTLALMDAGVPIKAPVAGIAMGLIKQDDKVTILSDIQGIEDFLGD 486
Query: 181 PNLTVA 186
+ VA
Sbjct: 487 MDFKVA 492
>gi|221632640|ref|YP_002521861.1| polynucleotide phosphorylase/polyadenylase [Thermomicrobium roseum
DSM 5159]
gi|257096714|sp|B9KYR9.1|PNP_THERP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|221156259|gb|ACM05386.1| polyribonucleotide nucleotidyltransferase [Thermomicrobium roseum
DSM 5159]
Length = 790
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA-VYGPRPVRN--KSIKVHG 66
G R DGR+ E+R+I ++G+ + GSA +G T+VL G + S+ +
Sbjct: 323 GERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCTLGTKEEEQFLDSLGIEE 382
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FSTGE R+ R R +L R A+ A + SE + + EV
Sbjct: 383 TKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAER-ALLAVLPSEDEFPYTMRLVSEV 441
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD------TPLVDISHLEETLG 179
L ++G A V ++LAL+DAG+P+R+ V + L D T L DI +E+ LG
Sbjct: 442 LSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTTGRYTILTDIQGIEDALG 501
Query: 180 GPNLTVA 186
+ VA
Sbjct: 502 DMDFKVA 508
>gi|442804795|ref|YP_007372944.1| ribonuclease PH [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442740645|gb|AGC68334.1| ribonuclease PH [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 240
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 24/234 (10%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR+ +ELRKI ++GS IE GNTKV+ A+V P K G
Sbjct: 3 RVDGRKHNELRKINITRNYIYHAEGSVLIEFGNTKVICTASVDDKVPPFRKGT---GEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS----QIDIFVEV 125
+ +YSM +T R R K + + ++++ + ++ S V +S I I +V
Sbjct: 60 VTAEYSMLPRATQVRNVRDINKLKLNGRAYEIQRLIGRSLRSVVDFKSLGERSIIIDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHL 174
+QADGG A + +AL+DA +P++ +V A S + + L+D+ +
Sbjct: 120 IQADGGTRTASITGGFIALMDACSYLLDKNIITEMPIKNFVAAVSVGIVHENKLLDLCYE 179
Query: 175 EETLGGPNLTVAALPLSGKVAVMELSQKL---HLDHLPRVLDCALKGCADIHAI 225
E+ ++ V + SG++ ++ + +L D L ++L+ A KG +++ +I
Sbjct: 180 EDANATVDMNV-VMTDSGQLIELQATGELSPFSRDDLNQLLNMAEKGISELISI 232
>gi|170067610|ref|XP_001868550.1| mRNA transport regulator 3 [Culex quinquefasciatus]
gi|167863714|gb|EDS27097.1| mRNA transport regulator 3 [Culex quinquefasciatus]
Length = 173
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV-RNKSIKVHGSV 68
G R R+ E RK +LGV S + GSAY+E GNTKV+ +V+ PR + + + + G +
Sbjct: 41 GNRKCNRQDTESRKYFMKLGVVSTAKGSAYLELGNTKVIVSVFDPREIPKQNTFRELGEL 100
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ ++S F+ RK P+ D + ++ + +A+ + + P QIDIF VL+
Sbjct: 101 YCDLKFS--PFACVHRKN-PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLED 157
Query: 129 DGG 131
DG
Sbjct: 158 DGS 160
>gi|375086947|ref|ZP_09733339.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
gi|374563662|gb|EHR34973.1| polyribonucleotide nucleotidyltransferase [Megamonas funiformis YIT
11815]
Length = 689
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVHG 66
+R DGR E+R I C +G+ ++ GSA +G T++L G V + I
Sbjct: 310 IRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVID-GIGDDT 368
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ +S GE R R G R+ +L R V E P + + + EV
Sbjct: 369 SKRYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEEFPYT-LRLVSEV 427
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + V +TL+L+ AG+P+++ V C+ L D T L DI +E+ LG
Sbjct: 428 LESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAYTILTDIQGMEDALGDM 487
Query: 182 NLTVAALP 189
+ VA P
Sbjct: 488 DFKVAGTP 495
>gi|419419577|ref|ZP_13959810.1| ribonuclease PH [Propionibacterium acnes PRP-38]
gi|422395912|ref|ZP_16475945.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
gi|327332417|gb|EGE74153.1| tRNA nucleotidyltransferase [Propionibacterium acnes HL097PA1]
gi|379979298|gb|EIA12618.1| ribonuclease PH [Propionibacterium acnes PRP-38]
Length = 280
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 42 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 98
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 99 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 158
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 159 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPITGSVQAISVGVVDGIPMLDLAYE 218
Query: 175 EETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 219 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 269
>gi|302551723|ref|ZP_07304065.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
gi|302469341|gb|EFL32434.1| ribonuclease PH [Streptomyces viridochromogenes DSM 40736]
Length = 245
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 40/254 (15%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGR +LR I G ++GS + G+TKV A+V P K G
Sbjct: 3 RIDGRTPQQLRPITIERGWSKHAEGSVLVSFGDTKVFCTASVTEGVPRWRKG---SGEGW 59
Query: 70 INFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQID 120
+ +YSM R T RGDR +T EIS + +++ A I + + I
Sbjct: 60 VTAEYSML-----PRSTNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTIV 114
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGI-------------PMREYVVACSASLAGDTP 167
+ +VLQADGG A + A +AL DA P+ V A S + G P
Sbjct: 115 LDCDVLQADGGTRTAAITGAYVALADAVAWAQRKKLIKAGRQPLTGTVSAVSVGIVGGVP 174
Query: 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADI 222
L+D+ + E+ ++ V +G +E+ ++ D L +LD A+ GC+++
Sbjct: 175 LLDLCYEEDVKADTDMNVVC---TGDGRFVEVQGTAEAEPFARDELNALLDLAVAGCSEL 231
Query: 223 HAILDTAIKQHLIK 236
A TA+ L K
Sbjct: 232 AAHQRTALDTVLGK 245
>gi|405982183|ref|ZP_11040507.1| ribonuclease PH [Actinomyces neuii BVS029A5]
gi|404390974|gb|EJZ86040.1| ribonuclease PH [Actinomyces neuii BVS029A5]
Length = 264
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 112/250 (44%), Gaps = 26/250 (10%)
Query: 7 YGGGL--RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV 64
YG G+ R DGR ELRK+ + ++ +G+ I GNT VL V + +K
Sbjct: 17 YGKGMTSRADGREVDELRKVEIKRNWLNEGEGNVLISFGNTTVLCVASLTEGV-PRWLKG 75
Query: 65 HGSVLINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQID 120
G + +YSM +T R R K T EIS + +++ A I +E + I
Sbjct: 76 QGRGWVTAEYSMLPRATSTRSQRESRKGKIGGRTHEISRLIGRSLRAIIDTEALGENTIV 135
Query: 121 IFVEVLQADGGNFCACVNAATLALIDA---------------GIPMREYVVACSASLAGD 165
+ +VLQADGG A + A +AL+DA + + V A S +
Sbjct: 136 LDCDVLQADGGTRTASITGAYVALVDAVRYGQKQGLIRADGKNPVLTDSVSAISVGIIDG 195
Query: 166 TPLVDISHLEETLGGPNLTVAALPLSGK-VAVMELSQKLHLD--HLPRVLDCALKGCADI 222
P +D+ + E+ ++ V + SGK V V ++ D L ++LD A GCA++
Sbjct: 196 EPRLDLPYEEDVRAETDMNV-VMTGSGKFVEVQGTAEGAPFDRSELGKLLDLAEAGCANL 254
Query: 223 HAILDTAIKQ 232
+ A+ +
Sbjct: 255 AQLQKAALDE 264
>gi|262163750|ref|ZP_06031490.1| ribonuclease PH [Vibrio mimicus VM223]
gi|262027730|gb|EEY46395.1| ribonuclease PH [Vibrio mimicus VM223]
Length = 238
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRNYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGDPFSHEQLLELLAVAKKGIADIVAV 231
>gi|405978848|gb|EKC43209.1| Exosome complex exonuclease RRP46 [Crassostrea gigas]
Length = 215
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 20 ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAV 78
+LR++ LG S+ DG A + QG+T V +AVYGP V+ K + ++ + ++ +
Sbjct: 7 KLRQLSSTLGDLSRPDGDATVSQGDTCVTSAVYGPGEVKVTKELLDKATIDVVYKPKSGL 66
Query: 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVN 138
E+ + +R + I+ +HPRS I I V+ +Q G C+N
Sbjct: 67 PGCAEKL-----------LERTIRNSCETVILGNLHPRSSISITVQEIQNRGSLLSCCIN 115
Query: 139 AATLALIDAGIPMREYVVACSASLAGDTPLV-DISHLEE 176
+ +AL+D+G+ MR + A S ++ + ++ D + L+E
Sbjct: 116 STCMALLDSGVSMRYLMAAVSCAINDNGSIIMDPNTLQE 154
>gi|308235684|ref|ZP_07666421.1| ribonuclease PH [Gardnerella vaginalis ATCC 14018 = JCM 11026]
gi|311114281|ref|YP_003985502.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
gi|385802069|ref|YP_005838472.1| tRNA nucleotidyltransferase [Gardnerella vaginalis HMP9231]
gi|415702562|ref|ZP_11458708.1| ribonuclease PH [Gardnerella vaginalis 284V]
gi|415705683|ref|ZP_11460954.1| ribonuclease PH [Gardnerella vaginalis 75712]
gi|415706606|ref|ZP_11461595.1| ribonuclease PH [Gardnerella vaginalis 0288E]
gi|417556225|ref|ZP_12207284.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 315-A]
gi|310945775|gb|ADP38479.1| tRNA nucleotidyltransferase [Gardnerella vaginalis ATCC 14019]
gi|333393285|gb|AEF31203.1| tRNA nucleotidyltransferase [Gardnerella vaginalis HMP9231]
gi|333602720|gb|EGL14145.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 315-A]
gi|388052405|gb|EIK75429.1| ribonuclease PH [Gardnerella vaginalis 75712]
gi|388053108|gb|EIK76099.1| ribonuclease PH [Gardnerella vaginalis 284V]
gi|388054818|gb|EIK77753.1| ribonuclease PH [Gardnerella vaginalis 0288E]
Length = 254
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 34/249 (13%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYG---PRPVRNKSIKVHG 66
+R DGR ELR ++ + +GS IE GNT+V+ A + PR R+ G
Sbjct: 14 IRFDGRDVDELRPVKITRNFTNVPEGSVLIECGNTRVMCTATFTIGVPRWRRDT-----G 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R K T EIS + + + I + I I
Sbjct: 69 LGWVTAEYSMLPRATAERTDRESVKGKIGGRTHEISRLIGRCLRGVIDMKAMGECLIQID 128
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A + A +AL+D A +++ V A S + TP++
Sbjct: 129 CDVLQADGGTRTASITGAYVALVDALNWAEKHKHIRSAKNVLKDSVSAVSVGVINGTPML 188
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG ++ A
Sbjct: 189 DLPYVEDSQAMTDMNVA---MTGSGNFIEIQGTAEHRPFNRDELNVLLDLAAKGNRELQA 245
Query: 225 ILDTAIKQH 233
A+ Q+
Sbjct: 246 AQRAALSQN 254
>gi|291532399|emb|CBL05512.1| polyribonucleotide nucleotidyltransferase [Megamonas hypermegale
ART12/1]
Length = 574
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 11/188 (5%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVHG 66
+R DGR E+R I C +G+ ++ GSA +G T++L G V + I
Sbjct: 310 IRPDGRGLEEVRPISCEVGILPRTHGSALFTRGQTQILNVTTLGALGDEQVID-GIGDDT 368
Query: 67 SVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
S Y+ +S GE R R G R+ +L R V E P + + + EV
Sbjct: 369 SKRYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSVEEFPYT-LRLVSEV 427
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L+++G + V +TL+L+ AG+P+++ V C+ L D T L DI +E+ LG
Sbjct: 428 LESNGSSSMGSVCGSTLSLMHAGVPIKKPVSGCAMGLVKDGDAYTILTDIQGMEDALGDM 487
Query: 182 NLTVAALP 189
+ VA P
Sbjct: 488 DFKVAGTP 495
>gi|284108781|ref|ZP_06386446.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
gi|283829855|gb|EFC34146.1| polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria
sp. WGA-A3]
Length = 700
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKSIKVHGSVL 69
+R DGR ++R I C + ++ GSA +G T+ LA V G + + G
Sbjct: 311 VRADGRGASDIRPITCETSILPRTHGSALFTRGETQSLAVVTLGTSDDEQRIDALEGEYF 370
Query: 70 INF--QYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
NF Y+ FS GE R R G R+ L R S E P + I I ++L
Sbjct: 371 RNFMLHYNFPPFSVGEARPLRSPGRREVGHGKLAERALKSVLPDKEAFPYT-IRIVSDIL 429
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLA--GDTPLV--DISHLEETLGGPN 182
+++G + A V TLA++DAG+P+++ V + L GD L+ DI LE+ LG +
Sbjct: 430 ESNGSSSMATVCGGTLAMMDAGVPIKKPVAGIAMGLIKDGDRVLILSDILGLEDHLGDMD 489
Query: 183 LTV 185
V
Sbjct: 490 FKV 492
>gi|404404673|ref|ZP_10996257.1| polynucleotide phosphorylase/polyadenylase [Alistipes sp. JC136]
Length = 747
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
GLR DGR+ E+R I C +G + GSA +G T+ L V + K + V G
Sbjct: 322 GLRLDGRKTDEIRPIWCEVGYLPAAHGSAIFTRGETQSLTTVTLGTKLDEKVKDEVLVQG 381
Query: 67 SVLINFQYSMAVFSTGERK-TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FSTGE K R R+ L R + E +P + + I ++
Sbjct: 382 TEQFVLHYNFPPFSTGEAKAARGLSRREIGHGHLAWRALKPMIPLGEENPYA-VRIVSDI 440
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
L+++G + A V A TLAL+DAG+ +++ V + L D+ + L + LG
Sbjct: 441 LESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLISDSETGKWAVLSDILG 494
>gi|300859074|ref|YP_003784057.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|375289262|ref|YP_005123803.1| ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|379715946|ref|YP_005304283.1| ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|383314832|ref|YP_005375687.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|384505246|ref|YP_005681916.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|384507349|ref|YP_005684018.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|384509438|ref|YP_005686106.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|384511521|ref|YP_005691099.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|385808134|ref|YP_005844531.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|386740965|ref|YP_006214145.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|387137171|ref|YP_005693151.1| ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|387139229|ref|YP_005695208.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387141213|ref|YP_005697191.1| ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850991|ref|YP_006353226.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
gi|300686528|gb|ADK29450.1| ribonuclease PH [Corynebacterium pseudotuberculosis FRC41]
gi|302206777|gb|ADL11119.1| Ribonuclease PH [Corynebacterium pseudotuberculosis C231]
gi|302331330|gb|ADL21524.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1002]
gi|308277022|gb|ADO26921.1| Ribonuclease PH [Corynebacterium pseudotuberculosis I19]
gi|341825460|gb|AEK92981.1| Ribonuclease PH [Corynebacterium pseudotuberculosis PAT10]
gi|348607616|gb|AEP70889.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 42/02-A]
gi|349735707|gb|AEQ07185.1| Ribonuclease PH [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355393004|gb|AER69669.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 1/06-A]
gi|371576551|gb|AEX40154.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 3/99-5]
gi|377654652|gb|AFB73001.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 316]
gi|380870333|gb|AFF22807.1| Ribonuclease PH [Corynebacterium pseudotuberculosis P54B96]
gi|383805527|gb|AFH52606.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 267]
gi|384477659|gb|AFH91455.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 31]
gi|388248297|gb|AFK17288.1| Ribonuclease PH [Corynebacterium pseudotuberculosis 258]
Length = 247
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 31/236 (13%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL----AAVYGPRPVRNKSIKVHGS 67
R DGR ++R ++ G + GS +E GNT+V+ A + PR R+ G
Sbjct: 11 RADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDS-----GE 65
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAI-MSEVHPRSQIDIF 122
+ +Y+M +T +R R RG K T EIS + +++ AA+ +SE+ + I+I
Sbjct: 66 GWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENT-INID 124
Query: 123 VEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDI 171
+VLQADGG A + A +AL DA G P+++ V A S + +D+
Sbjct: 125 CDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDL 184
Query: 172 SHLEETLGGPNLTVAALPLSGKVAVMELS---QKLHLDHLPRVLDCALKGCADIHA 224
+ E++ ++ V + +G+ ++ + D L R+LD A KGC ++ A
Sbjct: 185 PYEEDSRADVDMNV--IMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVA 238
>gi|410624128|ref|ZP_11334936.1| ribonuclease PH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410156468|dbj|GAC30310.1| ribonuclease PH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 237
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 24/232 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R GR ++R + ++GS IE GNTKVL A+V P + +K G
Sbjct: 1 MRPSGRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNASVVEGVP---RFMKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
I +YSM +T R R RG + +T EI + +++ AA+ ++ + I + +
Sbjct: 58 WITAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITLDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A +AL+DA GI PM+ + A S + +P+ D+ +
Sbjct: 118 VIQADGGTRTASITGACVALVDALTWMRAKGILKANPMKHMIAAVSVGIYKGSPIADLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVME---LSQKLHLDHLPRVLDCALKGCADI 222
LE++ ++ V + +GK+ ++ ++ D + +L A G ++
Sbjct: 178 LEDSAAETDMNV-VMTDTGKLIEVQGTAEAEPFSFDEMNEMLSLAKDGIMEL 228
>gi|224060110|ref|XP_002300042.1| predicted protein [Populus trichocarpa]
gi|222847300|gb|EEE84847.1| predicted protein [Populus trichocarpa]
Length = 961
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 19/238 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY--GPRPV-RNKSIKVHG 66
G R DGRR E+R + C G GS+ +G+T+VL V PR R S+
Sbjct: 365 GFRVDGRRLDEVRPLYCEAGYLPNLHGSSLFSRGDTQVLCTVTLGAPRDAQRLDSLVGPP 424
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+ YS FS E R +R+ +A+ A + E + I EV+
Sbjct: 425 TKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRINSEVM 484
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP-----------LVDISHLE 175
+DG A V ++A++DAGIP++E+V S L + + DI LE
Sbjct: 485 ASDGSTSMATVCGGSVAMMDAGIPLQEHVAGVSVGLVSEVDPSTGEIKDYRIVTDILGLE 544
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAILDTAI 230
+ LG + +A V ++L K + LD + L+ ALKG I A +D I
Sbjct: 545 DHLGDMDFKIAG--TRKGVTAVQLDIKPAGIPLDIICECLEPALKGRLQILARMDQEI 600
>gi|339490022|ref|YP_004704550.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Pseudomonas putida S16]
gi|431805168|ref|YP_007232071.1| ribonuclease PH [Pseudomonas putida HB3267]
gi|338840865|gb|AEJ15670.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Pseudomonas putida S16]
gi|430795933|gb|AGA76128.1| ribonuclease PH [Pseudomonas putida HB3267]
Length = 240
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL D AG P++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALCDALAVIKKRGGLKAGNPLKHMIAAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + +L A KG ++I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMSEIFELQQAAL 238
>gi|325279004|ref|YP_004251546.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
DSM 20712]
gi|324310813|gb|ADY31366.1| Polyribonucleotide nucleotidyltransferase [Odoribacter splanchnicus
DSM 20712]
Length = 758
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK---VHG 66
G+R DGR ++R I C +G GS+ +G T+ L++V + K I + G
Sbjct: 315 GVRLDGRTTEQIRPIWCEVGYLPGPHGSSIFTRGETQSLSSVTLGTKLDEKIIDEATIQG 374
Query: 67 SVLINFQYSMAVFSTGERK-TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ FSTGE K +R G R+ +L LR ++ E P + + + ++
Sbjct: 375 KERFLLHYNFPPFSTGEAKASRGVGRREIGHGNLALRAL--KRMIPEDFPYT-VRVVSDI 431
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
L+++G + A V A TLAL+DAG+PM++ V + L D + L + LG
Sbjct: 432 LESNGSSSMATVCAGTLALMDAGVPMKKPVTGIAMGLITDKGCAKYAVLSDILG 485
>gi|281412875|ref|YP_003346954.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
gi|281373978|gb|ADA67540.1| polyribonucleotide nucleotidyltransferase [Thermotoga naphthophila
RKU-10]
Length = 708
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKV---HG 66
G+R DGR+ E+R I C +G+F ++ GSA +G T+ L V P+ + I G
Sbjct: 315 GIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGAPMDVQIIDTLLEEG 374
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
Y+ F TGE K R R+ L R + E P + I + E+
Sbjct: 375 VKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNILPPEEEFPYT-IRVVSEI 433
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA----GDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++++V + L + L DI +E+ G
Sbjct: 434 LESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDIIGMEDHYGDM 493
Query: 182 NLTVA 186
+ VA
Sbjct: 494 DFKVA 498
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 16 RRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGSVLINFQY 74
R E R + + GV S++ GS ++E G TKV+ A YGP R + G ++
Sbjct: 15 REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMG--VLECHI 72
Query: 75 SMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFC 134
+ A F+ +R T D + L + AI+ E +P+S I + +L+ DGG
Sbjct: 73 TRAPFAEQKRATLQETDADRG-LRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGVLP 131
Query: 135 ACVNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
A V A++ AL++AGI +R+ V A +AGD +V
Sbjct: 132 ALVMASSTALVEAGIELRDIVTA----IAGDARMV 162
>gi|298253316|ref|ZP_06977108.1| ribonuclease PH [Gardnerella vaginalis 5-1]
gi|297532711|gb|EFH71597.1| ribonuclease PH [Gardnerella vaginalis 5-1]
Length = 247
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR + +GS IE GNT+V+ V PR R+ +
Sbjct: 8 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 64
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 65 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 122
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ + A S + TP++
Sbjct: 123 CDVLQADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPML 182
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 183 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 233
>gi|283782839|ref|YP_003373593.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
gi|283441100|gb|ADB13566.1| tRNA nucleotidyltransferase [Gardnerella vaginalis 409-05]
Length = 253
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 34/234 (14%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHG 66
+R DGR ELR + +GS IE GNT+V+ V PR R+ +
Sbjct: 14 IRVDGRDVDELRPVHITRKFTDVPEGSVLIECGNTRVMCTATFTVGVPRWRRDSGLG--- 70
Query: 67 SVLINFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+ +YSM +T ER R RG +T EIS + + + + + QI I
Sbjct: 71 --WVTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVVDMKAMGECQIQID 128
Query: 123 VEVLQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLV 169
+VLQADGG A V A +AL+D A +++ + A S + TP++
Sbjct: 129 CDVLQADGGTRTASVTGAYVALVDALHWAEKNGHIRSAANVIKDSISAVSVGVINGTPML 188
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKG 218
D+ ++E++ ++ VA ++G +E+ + + D L +LD A KG
Sbjct: 189 DLPYVEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRDELNTLLDLATKG 239
>gi|262190382|ref|ZP_06048643.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
gi|262033743|gb|EEY52222.1| ribonuclease PH [Vibrio cholerae CT 5369-93]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLTVAKKGIADIVAV 231
>gi|254226345|ref|ZP_04919935.1| ribonuclease PH [Vibrio cholerae V51]
gi|125621150|gb|EAZ49494.1| ribonuclease PH [Vibrio cholerae V51]
Length = 257
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 20 MRQDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 76
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 77 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 136
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 137 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 250
>gi|300176535|emb|CBK24200.2| unnamed protein product [Blastocystis hominis]
Length = 600
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 22 RKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR-PVRNKSIKVHGSVLINFQYSMAVFS 80
+++ GV + GSAY+E GN K++ +V GPR R+ + G++ +F+Y A F+
Sbjct: 3 KQLLISTGVVKNASGSAYVELGNMKIMCSVQGPRDSFRSVDSQDKGALYCDFKY--APFA 60
Query: 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAA 140
+ +R+T +SL L + +S ++ E P++ +++++ VL+ DG + A
Sbjct: 61 QKDVYQPNLLNRETKSMSLLLEKILSTSVDLEAFPKAVVELYIMVLEVDGDPLGLSLMCA 120
Query: 141 TLALIDAGIPMREYVVACSASLAGDTPLV 169
+LAL DAG+ + + C S+ + ++
Sbjct: 121 SLALTDAGLNLFGLLGCCCVSVMENNQMI 149
>gi|317050733|ref|YP_004111849.1| ribonuclease PH [Desulfurispirillum indicum S5]
gi|316945817|gb|ADU65293.1| ribonuclease PH [Desulfurispirillum indicum S5]
Length = 244
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 28/243 (11%)
Query: 16 RRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYS 75
R HELR I ++GS I G T VL + V I S + +YS
Sbjct: 5 RAPHELRPITITRNYTKYAEGSVLIAMGETIVLCNATVQKTVPRFLIG-KDSGWVTAEYS 63
Query: 76 MAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMS--EVHPRS--QIDIFVEVLQADGG 131
M +T R R + S ++++++ + ++ S ++H S I I +VLQADGG
Sbjct: 64 MLPRATDVRNRRESQQGRPSGRTMEIQRLIGRSLRSIIDLHAMSGYTITIDCDVLQADGG 123
Query: 132 NFCACVNAATLALID-------AGI----PMREYVVACSASLAGDTPLVDISHLEETLGG 180
CA VN A +AL D AG+ P+R V A S + + PL D+ +LE++
Sbjct: 124 TRCASVNGAFIALADAVDSMLAAGMIGESPLRSTVAAISVGIFNNWPLADLDYLEDSQAM 183
Query: 181 PNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIHAI----LDTAIK 231
++ V A +GK +E+ S+ +L+ AL G I A+ L I+
Sbjct: 184 VDMNVVA---TGKGEFVEIQGTGESRPFSRKDHDILLELALDGIGQISALQFEQLSAQIR 240
Query: 232 QHL 234
QHL
Sbjct: 241 QHL 243
>gi|50843137|ref|YP_056364.1| ribonuclease PH [Propionibacterium acnes KPA171202]
gi|50840739|gb|AAT83406.1| probable ribonuclease PH [Propionibacterium acnes KPA171202]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 192
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 193 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 243
>gi|320104995|ref|YP_004180586.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
gi|319752277|gb|ADV64037.1| polyribonucleotide nucleotidyltransferase [Isosphaera pallida ATCC
43644]
Length = 766
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
GLR+DGR +LR I C +G+ ++ GSA ++G T+ L V G + +
Sbjct: 329 GLRSDGRGPKDLRPISCEVGLLPKAHGSALFQRGETQALVTTVLGTAADEQRIDGIMDEY 388
Query: 69 LINF--QYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
F Y+M F+ GE R R G R+ +L R +V+ + I + ++
Sbjct: 389 TKKFMLDYNMPSFAVGEVRPIRGPGRREIGHGALAER-SVAPVLPDPARFPYTIRVVSDI 447
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP------LVDISHLEETLG 179
L+++G + A V ATL+L+DAG+P+ + V S L D P L DI E+ G
Sbjct: 448 LESNGSSSMASVCGATLSLMDAGVPISDPVGGISIGLVWDEPTDRFVLLTDIIGDEDHYG 507
Query: 180 GPNLTVA 186
+ VA
Sbjct: 508 DMDFKVA 514
>gi|334563352|ref|ZP_08516343.1| ribonuclease PH [Corynebacterium bovis DSM 20582]
Length = 276
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAA----VYGPRPVRNKSIKVHGS 67
R DGR ELR +R G GS +E G+TKV+ V PR R+ G
Sbjct: 19 RADGRATDELRPVRITRGFTDNPAGSVLVEFGSTKVMCTASVEVGVPRFKRDS-----GE 73
Query: 68 VLINFQYSMAVFSTGERKTRP--RGDRK--TSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ +YSM ST ER R RG K T EIS + +A+ AA+ + + +
Sbjct: 74 GWLTAEYSMLPGSTHERMPRESMRGKVKGRTHEISRLVGRALRAAVDLRELGENTVMVDC 133
Query: 124 EVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDIS 172
+VLQADGG A + A +AL DA G P+RE V A S + P +D+
Sbjct: 134 DVLQADGGTRTAAITGAYVALADALDVLAERGVVPGTPLREPVAAVSVGVIDGVPCLDLP 193
Query: 173 HLEETLGGPNLTV 185
+ E++ ++ V
Sbjct: 194 YEEDSRADVDMNV 206
>gi|86739583|ref|YP_479983.1| ribonuclease PH [Frankia sp. CcI3]
gi|123765222|sp|Q2JEN8.1|RNPH_FRASC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|86566445|gb|ABD10254.1| RNAse PH [Frankia sp. CcI3]
Length = 247
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 15/234 (6%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGRR ELR++ G ++GSA I G T+VL A V + K G +
Sbjct: 2 IRADGRRPDELRQVTILRGWQEHAEGSALISAGRTRVLCAASVTTGV-PRWRKGSGLGWV 60
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
+YSM +T R R R +T EIS + +++ A I + + I I +VL
Sbjct: 61 TAEYSMLPRATDTRNDRESVRGRISGRTHEISRLIGRSLRACIDLKALGENTIAIDCDVL 120
Query: 127 QADGGNFCACVNAATLALIDA----GIP---MREYVVACSASLAGDTPLVDISHLEETLG 179
ADGG A + A +AL+DA G P + + G+ ++D+++ E++
Sbjct: 121 LADGGTRTAAITGAYVALVDAARWLGRPDAIITSVSAVSVGVVKGEA-MLDLAYSEDSTA 179
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAILDTAIK 231
++ V G V V ++ D L +LD A++GCA + AI A++
Sbjct: 180 DTDMNVVCTGADGFVEVQGTAEGTPFDRTMLDSLLDLAVRGCAQLTAIQTEALR 233
>gi|162329623|ref|YP_001218468.2| ribonuclease PH [Vibrio cholerae O395]
gi|262167372|ref|ZP_06035080.1| ribonuclease PH [Vibrio cholerae RC27]
gi|262024174|gb|EEY42867.1| ribonuclease PH [Vibrio cholerae RC27]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|148264306|ref|YP_001231012.1| ribonuclease PH [Geobacter uraniireducens Rf4]
gi|189043764|sp|A5G3S1.1|RNPH_GEOUR RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|146397806|gb|ABQ26439.1| RNAse PH [Geobacter uraniireducens Rf4]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R DGR LR+++ ++GS IE G+TKV+ A+V G P ++ G+
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVP---PFLRGKGTG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +YSM +T R R K T EI + +++ A + + + I +
Sbjct: 58 WVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLIDCD 117
Query: 125 VLQADGGNFCACVNAATLALID-----------AGIPMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A +AL D A +P++E V A S + TPL+D+++
Sbjct: 118 VIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDLNY 177
Query: 174 LEET 177
+E++
Sbjct: 178 VEDS 181
>gi|116626750|ref|YP_828906.1| ribonuclease PH [Candidatus Solibacter usitatus Ellin6076]
gi|122251374|sp|Q01NZ9.1|RNPH_SOLUE RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|116229912|gb|ABJ88621.1| RNAse PH [Candidatus Solibacter usitatus Ellin6076]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 30/197 (15%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV----YGPRPVRNKSIKVHG 66
+R D R +LR ++ G ++GSA I+ GNT VL A P +RN G
Sbjct: 1 MRTDNRTAGQLRPVQITTGCLMTAEGSALIKVGNTHVLCAATIEDTVPPFLRNT-----G 55
Query: 67 SVLINFQYSMAVFSTGER------KTRPRGDRKTSEISLQLRQAVSAAI-MSEVHPRSQI 119
+ +YSM +T +R K RP G +T EI + +++ +A+ MS R+ I
Sbjct: 56 KGWVTAEYSMLPRATAKRTPREVTKGRPSG--RTHEIQRLIGRSMRSAVDMSSFGERTLI 113
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPL 168
I +V+QADGG A + A +A+ A P+R+YV A S L G P+
Sbjct: 114 -IDCDVIQADGGTRTASITGAFVAMALAFRQLIEYRALKANPIRDYVAATSVGLVGGIPM 172
Query: 169 VDISHLEETLGGPNLTV 185
+D+ + E++ ++ V
Sbjct: 173 LDLCYEEDSQADVDMNV 189
>gi|161611344|ref|YP_272506.2| ribonuclease PH [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416019427|ref|ZP_11566320.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
gi|416022289|ref|ZP_11567529.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
gi|422403209|ref|ZP_16480268.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
gi|320322255|gb|EFW78351.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. B076]
gi|320331904|gb|EFW87842.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
gi|330873180|gb|EGH07329.1| ribonuclease PH [Pseudomonas syringae pv. glycinea str. race 4]
Length = 240
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALADALKVIKKRGGLKGGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
E++ +L V G + V ++ + L +L A KG ++ + A+
Sbjct: 180 PEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEELNAMLALAQKGMTELFELQRAAL 238
>gi|95113322|emb|CAK18050.1| ribonuclease PH (RNase PH), tRNA nucleotidyltransferase
[Pseudomonas entomophila L48]
Length = 253
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 16 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 74
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 75 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 132
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P++ + A S + ++D+ +
Sbjct: 133 IQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDY 192
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + +L A KG +I + A+
Sbjct: 193 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAAL 251
>gi|282855012|ref|ZP_06264344.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|387504042|ref|YP_005945271.1| ribonuclease PH [Propionibacterium acnes 6609]
gi|422456706|ref|ZP_16533369.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
gi|422574922|ref|ZP_16650466.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
gi|282581600|gb|EFB86985.1| tRNA nucleotidyltransferase [Propionibacterium acnes J139]
gi|314924268|gb|EFS88099.1| ribonuclease PH [Propionibacterium acnes HL001PA1]
gi|315106207|gb|EFT78183.1| ribonuclease PH [Propionibacterium acnes HL030PA1]
gi|335278087|gb|AEH29992.1| ribonuclease PH [Propionibacterium acnes 6609]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 193 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 243
>gi|422467716|ref|ZP_16544268.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
gi|422469159|ref|ZP_16545689.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
gi|314982113|gb|EFT26206.1| ribonuclease PH [Propionibacterium acnes HL110PA3]
gi|315090352|gb|EFT62328.1| ribonuclease PH [Propionibacterium acnes HL110PA4]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 16 RIDGRRLDQLRDVRIECGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 193 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 243
>gi|318057177|ref|ZP_07975900.1| ribonuclease PH [Streptomyces sp. SA3_actG]
gi|318078066|ref|ZP_07985398.1| ribonuclease PH [Streptomyces sp. SA3_actF]
gi|333024799|ref|ZP_08452863.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
gi|332744651|gb|EGJ75092.1| putative ribonuclease PH [Streptomyces sp. Tu6071]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 30/244 (12%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R DGR +LR + G ++GS + G+T+VL V + K G +
Sbjct: 3 RIDGRTPDQLRPVSIERGWSKHAEGSVLVSFGDTRVLCTASFTEGV-PRWRKGSGEGWVT 61
Query: 72 FQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQIDIF 122
+Y+M R T RGDR +T EIS + +++ A + + + + +
Sbjct: 62 AEYAML-----PRATNTRGDRESVRGKIGGRTHEISRLIGRSLRAVVDTRALGENTVVLD 116
Query: 123 VEVLQADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAGDTPLV 169
+VLQADGG A + A +AL DA +P+R+ V A S + P +
Sbjct: 117 CDVLQADGGTRTAAITGAYVALADAVRWAQGKKLVKAGRVPLRDTVSAVSVGIVDSVPYL 176
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLD--HLPRVLDCALKGCADIHAILD 227
D+ + E+ ++ V V V ++ D L +LD A GCAD+ A+
Sbjct: 177 DLRYEEDVRAETDMNVVRTGDGRFVEVQGTAEAAPFDRAELDALLDLASAGCADLAALQR 236
Query: 228 TAIK 231
A++
Sbjct: 237 EALE 240
>gi|407854103|gb|EKG06647.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi]
Length = 285
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG-SVL 69
LR DGR E+R R +Q DGSA+ QG T V+AAV GP R + + G V
Sbjct: 6 LRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKCGVQVY 65
Query: 70 INFQYSMAVFSTGER----KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+N + +R + R R +E+ + L ++ A + + PR +++ V +
Sbjct: 66 VNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVTI 125
Query: 126 LQADGGNFCACVNAATLALIDAGIPMR 152
L DG NA AL+DAG+P R
Sbjct: 126 LADDGALLSVATNALMCALLDAGVPCR 152
>gi|401399709|ref|XP_003880615.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
gi|325115026|emb|CBZ50582.1| putative 3' exoribonuclease [Neospora caninum Liverpool]
Length = 214
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 36 GSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTS 95
GSA++ G TK+ AVYGPRP + + GS+ + F+Y A F+T + +R ++
Sbjct: 16 GSAFVSVGKTKLNCAVYGPRPNTKAASQDRGSINLEFKY--APFATTSKGAC--NERDSA 71
Query: 96 EISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYV 155
+ L QAV+A + +++ +S I + V VL+ DGG A + LAL DAGI M + +
Sbjct: 72 HLVTLLHQAVNAVVRLDLYRKSTIAVSVLVLEDDGGVISAALTCIGLALADAGIEMLDVL 131
Query: 156 VACS 159
S
Sbjct: 132 TGAS 135
>gi|348031007|ref|YP_004873693.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
gi|347948350|gb|AEP31700.1| ribonuclease PH [Glaciecola nitratireducens FR1064]
Length = 237
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 20/192 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R GR ++R + ++GS IE GNTKVL A V P + +K G
Sbjct: 1 MRPSGRTASQIRPVTITRNFTCHAEGSVLIEFGNTKVLCNATVVEGVP---RFMKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +YSM +T R R RG + +T EI + +++ AA+ ++ + I + +
Sbjct: 58 WVTAEYSMLPRATHTRSDREAARGKQGGRTLEIQRLIARSLRAAVDLKLLGENTITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDA-------GI----PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A +AL+DA GI PM+ + A S + +P+ D+ +
Sbjct: 118 VIQADGGTRTASITGACVALVDALTWMRAKGILKANPMKHMIAAVSVGIYKGSPIADLEY 177
Query: 174 LEETLGGPNLTV 185
LE++ ++ V
Sbjct: 178 LEDSAADTDMNV 189
>gi|162139697|ref|YP_610833.2| ribonuclease PH [Pseudomonas entomophila L48]
Length = 240
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + +L A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMGEIFELQQAAL 238
>gi|163840218|ref|YP_001624623.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
gi|162953694|gb|ABY23209.1| ribonuclease PH [Renibacterium salmoninarum ATCC 33209]
Length = 250
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 36/201 (17%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL---AAVYG-PRPVRNKSIKVHG 66
LR DGR +LR I G SQ++GSA IE GNT+VL + G PR +R + G
Sbjct: 10 LRADGRTADQLRDISITRGWSSQAEGSALIEFGNTRVLCTSSLTEGVPRWLRGE-----G 64
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRS 117
+ +Y+M R T R DR +T EIS + +++ + I ++ +
Sbjct: 65 RGWVTAEYAML-----PRATNTRSDRESVKGKIGGRTHEISRLIGRSLRSIIDTKALGEN 119
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDA-------------GIPMREYVVACSASLAG 164
I + +VLQADGG A + A +AL ++ P+ + V A SA +
Sbjct: 120 TIVLDCDVLQADGGTRTAAITGAYVALAESIRFARENKLISATAQPLTDTVAAVSAGIID 179
Query: 165 DTPLVDISHLEETLGGPNLTV 185
P++D++++E+ ++ V
Sbjct: 180 TVPMLDLAYVEDVRAETDMNV 200
>gi|37928170|pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph
T125a Mutant From Aquifex Aeolicus
Length = 255
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 25/245 (10%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R+DGR+ +LR + + +GS I G TKV+ V N +K G I
Sbjct: 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPN-WLKGKGQGWI 59
Query: 71 NFQYSMAVFSTGERKTRP----RGDRKTSEISLQLRQAVSAAI-MSEVHPRSQIDIFVEV 125
+YSM +T +R R R +T EI + +A+ A+ ++++ R+ I + +V
Sbjct: 60 TAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERT-IWVDCDV 118
Query: 126 LQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISHL 174
+QADGG A + A +A+ DA I P++++V A S + D L+D++
Sbjct: 119 IQADGGARTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFE 178
Query: 175 EETLGGPNLTVAALPLSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
E++ ++ V SG+ V M D L ++LD A KG I+ +++ K
Sbjct: 179 EDSAAQVDMNVVGTG-SGRLSEVHTMGEEYSFTKDELIKMLDLAQKG---INELIELQKK 234
Query: 232 QHLIK 236
++I+
Sbjct: 235 LYVIQ 239
>gi|61215895|sp|Q6A759.2|RNPH_PROAC RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
Length = 244
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 62
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 182
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 183 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 233
>gi|325272059|ref|ZP_08138496.1| ribonuclease PH [Pseudomonas sp. TJI-51]
gi|324102805|gb|EGC00215.1| ribonuclease PH [Pseudomonas sp. TJI-51]
Length = 240
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M STGER R RG + +T EI + +++ AA+ ++ I ++V +V
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDITLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL DA G P++ + A S + ++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALCDALAVIKKRGGLKGGNPLKHMIAAVSVGMYQGEAVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + +L A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSAGGFIEVQGTAEGAPFQPEDFNAMLALAQKGMTEIFELQQAAL 238
>gi|161582033|ref|NP_229867.2| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|254851339|ref|ZP_05240689.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255744021|ref|ZP_05417975.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262153620|ref|ZP_06028747.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|360036846|ref|YP_004938609.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740100|ref|YP_005332069.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|384423537|ref|YP_005632895.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|417811284|ref|ZP_12457950.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|417815038|ref|ZP_12461679.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|418330912|ref|ZP_12941872.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|418335879|ref|ZP_12944782.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|418342451|ref|ZP_12949263.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|418347624|ref|ZP_12952362.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|418353133|ref|ZP_12955860.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|419824688|ref|ZP_14348198.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|419827894|ref|ZP_14351386.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|419831554|ref|ZP_14355023.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|419835156|ref|ZP_14358604.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|421315532|ref|ZP_15766106.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|421319001|ref|ZP_15769563.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|421323039|ref|ZP_15773572.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|421326507|ref|ZP_15777026.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|421330439|ref|ZP_15780924.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|421334033|ref|ZP_15784506.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|421337938|ref|ZP_15788380.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|421341886|ref|ZP_15792295.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|421345364|ref|ZP_15795752.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|422305615|ref|ZP_16392810.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|422890241|ref|ZP_16932681.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|422901036|ref|ZP_16936430.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|422905207|ref|ZP_16940076.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|422911951|ref|ZP_16946489.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|422915928|ref|ZP_16950282.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|422921451|ref|ZP_16954681.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|422924419|ref|ZP_16957476.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|423143479|ref|ZP_17131105.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|423148461|ref|ZP_17135831.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|423152247|ref|ZP_17139469.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|423155039|ref|ZP_17142182.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|423158904|ref|ZP_17145882.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|423163568|ref|ZP_17150375.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|423729578|ref|ZP_17702911.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|423733503|ref|ZP_17706733.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|423745976|ref|ZP_17711099.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|423810996|ref|ZP_17714875.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|423846264|ref|ZP_17718648.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|423878430|ref|ZP_17722278.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|423890192|ref|ZP_17725128.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|423924728|ref|ZP_17729741.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|423996337|ref|ZP_17739614.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|424000752|ref|ZP_17743854.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|424004913|ref|ZP_17747910.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|424007799|ref|ZP_17750755.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|424015043|ref|ZP_17754901.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|424018153|ref|ZP_17757965.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|424022710|ref|ZP_17762385.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|424025728|ref|ZP_17765357.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|424585102|ref|ZP_18024708.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|424589468|ref|ZP_18028925.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|424593730|ref|ZP_18033081.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|424597660|ref|ZP_18036871.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|424600432|ref|ZP_18039600.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|424605340|ref|ZP_18044316.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|424609058|ref|ZP_18047929.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|424611973|ref|ZP_18050792.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|424615857|ref|ZP_18054561.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|424620612|ref|ZP_18059149.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|424623531|ref|ZP_18062017.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|424628107|ref|ZP_18066426.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|424632053|ref|ZP_18070183.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|424635143|ref|ZP_18073175.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|424638963|ref|ZP_18076870.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|424643428|ref|ZP_18081195.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|424647220|ref|ZP_18084908.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|424651356|ref|ZP_18088891.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|424655309|ref|ZP_18092620.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|429888133|ref|ZP_19369626.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|440712143|ref|ZP_20892768.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443502260|ref|ZP_21069262.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443506160|ref|ZP_21072968.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443509998|ref|ZP_21076681.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443513840|ref|ZP_21080394.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443517644|ref|ZP_21084079.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443522233|ref|ZP_21088492.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443526090|ref|ZP_21092192.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443529165|ref|ZP_21095186.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443533903|ref|ZP_21099835.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443540095|ref|ZP_21105946.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|449054592|ref|ZP_21733260.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
gi|21759419|sp|Q9KVD6.2|RNPH_VIBCH RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
nucleotidyltransferase
gi|254847044|gb|EET25458.1| ribonuclease PH [Vibrio cholerae MO10]
gi|255738286|gb|EET93677.1| ribonuclease PH [Vibrio cholera CIRS 101]
gi|262030561|gb|EEY49198.1| ribonuclease PH [Vibrio cholerae INDRE 91/1]
gi|327483090|gb|AEA77497.1| Ribonuclease PH [Vibrio cholerae LMA3984-4]
gi|340045427|gb|EGR06370.1| ribonuclease PH [Vibrio cholerae HCUF01]
gi|340045984|gb|EGR06920.1| ribonuclease PH [Vibrio cholerae HC-49A2]
gi|341626496|gb|EGS51885.1| ribonuclease PH [Vibrio cholerae HC-70A1]
gi|341628188|gb|EGS53463.1| ribonuclease PH [Vibrio cholerae HC-48A1]
gi|341628493|gb|EGS53739.1| ribonuclease PH [Vibrio cholerae HC-40A1]
gi|341641625|gb|EGS66150.1| ribonuclease PH [Vibrio cholerae HC-02A1]
gi|341641819|gb|EGS66338.1| ribonuclease PH [Vibrio cholerae HFU-02]
gi|341648900|gb|EGS72915.1| ribonuclease PH [Vibrio cholerae BJG-01]
gi|341649103|gb|EGS73104.1| ribonuclease PH [Vibrio cholerae HC-38A1]
gi|356422727|gb|EHH76198.1| ribonuclease PH [Vibrio cholerae HC-06A1]
gi|356423445|gb|EHH76896.1| ribonuclease PH [Vibrio cholerae HC-21A1]
gi|356427556|gb|EHH80804.1| ribonuclease PH [Vibrio cholerae HC-19A1]
gi|356434261|gb|EHH87442.1| ribonuclease PH [Vibrio cholerae HC-23A1]
gi|356435792|gb|EHH88941.1| ribonuclease PH [Vibrio cholerae HC-22A1]
gi|356438571|gb|EHH91586.1| ribonuclease PH [Vibrio cholerae HC-28A1]
gi|356444298|gb|EHH97109.1| ribonuclease PH [Vibrio cholerae HC-32A1]
gi|356448345|gb|EHI01117.1| ribonuclease PH [Vibrio cholerae HC-43A1]
gi|356451154|gb|EHI03856.1| ribonuclease PH [Vibrio cholerae HC-33A2]
gi|356455326|gb|EHI07969.1| ribonuclease PH [Vibrio cholerae HC-61A1]
gi|356456765|gb|EHI09350.1| ribonuclease PH [Vibrio cholerae HC-48B2]
gi|356648000|gb|AET28055.1| ribonuclease PH [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793610|gb|AFC57081.1| ribonuclease PH [Vibrio cholerae IEC224]
gi|395923021|gb|EJH33834.1| ribonuclease PH [Vibrio cholerae CP1032(5)]
gi|395924359|gb|EJH35162.1| ribonuclease PH [Vibrio cholerae CP1041(14)]
gi|395926277|gb|EJH37065.1| ribonuclease PH [Vibrio cholerae CP1038(11)]
gi|395934838|gb|EJH45575.1| ribonuclease PH [Vibrio cholerae CP1042(15)]
gi|395936126|gb|EJH46855.1| ribonuclease PH [Vibrio cholerae CP1046(19)]
gi|395938096|gb|EJH48794.1| ribonuclease PH [Vibrio cholerae CP1048(21)]
gi|395947063|gb|EJH57721.1| ribonuclease PH [Vibrio cholerae HC-43B1]
gi|395947112|gb|EJH57769.1| ribonuclease PH [Vibrio cholerae HC-20A2]
gi|395948734|gb|EJH59372.1| ribonuclease PH [Vibrio cholerae HC-46A1]
gi|395964765|gb|EJH74962.1| ribonuclease PH [Vibrio cholerae HC-56A2]
gi|395964975|gb|EJH75163.1| ribonuclease PH [Vibrio cholerae HC-57A2]
gi|395967735|gb|EJH77785.1| ribonuclease PH [Vibrio cholerae HC-42A1]
gi|395976632|gb|EJH86075.1| ribonuclease PH [Vibrio cholerae HC-47A1]
gi|395979417|gb|EJH88768.1| ribonuclease PH [Vibrio cholerae CP1030(3)]
gi|395980006|gb|EJH89315.1| ribonuclease PH [Vibrio cholerae CP1047(20)]
gi|408011196|gb|EKG49026.1| ribonuclease PH [Vibrio cholerae HC-39A1]
gi|408017275|gb|EKG54790.1| ribonuclease PH [Vibrio cholerae HC-50A1]
gi|408018046|gb|EKG55516.1| ribonuclease PH [Vibrio cholerae HC-41A1]
gi|408022786|gb|EKG59979.1| ribonuclease PH [Vibrio cholerae HC-52A1]
gi|408028183|gb|EKG65094.1| ribonuclease PH [Vibrio cholerae HC-56A1]
gi|408028467|gb|EKG65358.1| ribonuclease PH [Vibrio cholerae HC-55A1]
gi|408037470|gb|EKG73865.1| ribonuclease PH [Vibrio cholerae CP1037(10)]
gi|408038262|gb|EKG74614.1| ribonuclease PH [Vibrio cholerae CP1040(13)]
gi|408038287|gb|EKG74638.1| ribonuclease PH [Vibrio cholerae HC-57A1]
gi|408045714|gb|EKG81520.1| ribonuclease PH [Vibrio Cholerae CP1044(17)]
gi|408047562|gb|EKG83175.1| ribonuclease PH [Vibrio cholerae CP1050(23)]
gi|408058122|gb|EKG92942.1| ribonuclease PH [Vibrio cholerae HC-81A2]
gi|408059856|gb|EKG94597.1| ribonuclease PH [Vibrio cholerae HC-51A1]
gi|408612342|gb|EKK85685.1| ribonuclease PH [Vibrio cholerae CP1033(6)]
gi|408624258|gb|EKK97207.1| ribonuclease PH [Vibrio cholerae HC-1A2]
gi|408628402|gb|EKL01155.1| ribonuclease PH [Vibrio cholerae HC-17A1]
gi|408628417|gb|EKL01169.1| ribonuclease PH [Vibrio cholerae CP1035(8)]
gi|408632275|gb|EKL04740.1| ribonuclease PH [Vibrio cholerae HC-41B1]
gi|408637272|gb|EKL09341.1| ribonuclease PH [Vibrio cholerae HC-55C2]
gi|408644464|gb|EKL16149.1| ribonuclease PH [Vibrio cholerae HC-50A2]
gi|408644886|gb|EKL16559.1| ribonuclease PH [Vibrio cholerae HC-60A1]
gi|408646165|gb|EKL17786.1| ribonuclease PH [Vibrio cholerae HC-59A1]
gi|408652441|gb|EKL23656.1| ribonuclease PH [Vibrio cholerae HC-61A2]
gi|408659869|gb|EKL30902.1| ribonuclease PH [Vibrio cholerae HC-77A1]
gi|408660769|gb|EKL31771.1| ribonuclease PH [Vibrio cholerae HC-62A1]
gi|408850074|gb|EKL90060.1| ribonuclease PH [Vibrio cholerae HC-37A1]
gi|408850403|gb|EKL90367.1| ribonuclease PH [Vibrio cholerae HC-17A2]
gi|408855327|gb|EKL95034.1| ribonuclease PH [Vibrio cholerae HC-02C1]
gi|408859297|gb|EKL98958.1| ribonuclease PH [Vibrio cholerae HC-46B1]
gi|408862586|gb|EKM02093.1| ribonuclease PH [Vibrio cholerae HC-55B2]
gi|408867656|gb|EKM07012.1| ribonuclease PH [Vibrio cholerae HC-44C1]
gi|408871274|gb|EKM10517.1| ribonuclease PH [Vibrio cholerae HC-59B1]
gi|408875938|gb|EKM15075.1| ribonuclease PH [Vibrio cholerae HC-62B1]
gi|408882295|gb|EKM21135.1| ribonuclease PH [Vibrio cholerae HC-69A1]
gi|429224792|gb|EKY31110.1| Ribonuclease PH [Vibrio cholerae PS15]
gi|439972153|gb|ELP48450.1| ribonuclease PH [Vibrio cholerae 4260B]
gi|443433420|gb|ELS75928.1| ribonuclease PH [Vibrio cholerae HC-64A1]
gi|443437250|gb|ELS83349.1| ribonuclease PH [Vibrio cholerae HC-65A1]
gi|443441083|gb|ELS90753.1| ribonuclease PH [Vibrio cholerae HC-67A1]
gi|443444895|gb|ELS98154.1| ribonuclease PH [Vibrio cholerae HC-68A1]
gi|443448749|gb|ELT05366.1| ribonuclease PH [Vibrio cholerae HC-71A1]
gi|443451794|gb|ELT12039.1| ribonuclease PH [Vibrio cholerae HC-72A2]
gi|443455557|gb|ELT19322.1| ribonuclease PH [Vibrio cholerae HC-78A1]
gi|443460008|gb|ELT27398.1| ribonuclease PH [Vibrio cholerae HC-7A1]
gi|443462952|gb|ELT33971.1| ribonuclease PH [Vibrio cholerae HC-80A1]
gi|443464382|gb|ELT39045.1| ribonuclease PH [Vibrio cholerae HC-81A1]
gi|448265738|gb|EMB02971.1| Ribonuclease PH [Vibrio cholerae O1 str. Inaba G4222]
Length = 238
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|121728030|ref|ZP_01681069.1| ribonuclease PH [Vibrio cholerae V52]
gi|227116607|ref|YP_002818503.1| ribonuclease PH [Vibrio cholerae O395]
gi|121629733|gb|EAX62152.1| ribonuclease PH [Vibrio cholerae V52]
gi|146315337|gb|ABQ19876.1| ribonuclease PH [Vibrio cholerae O395]
gi|227012057|gb|ACP08267.1| ribonuclease PH [Vibrio cholerae O395]
Length = 257
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 20 MRPDNRAADQVRSIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 76
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 77 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 136
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 137 VIQADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 196
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 197 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 250
>gi|289425019|ref|ZP_06426798.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|365963328|ref|YP_004944894.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965571|ref|YP_004947136.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974507|ref|YP_004956066.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn33]
gi|422427613|ref|ZP_16504525.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
gi|422433712|ref|ZP_16510576.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
gi|422436240|ref|ZP_16513092.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
gi|422444101|ref|ZP_16520898.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
gi|422449907|ref|ZP_16526626.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
gi|422454140|ref|ZP_16530821.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
gi|422500794|ref|ZP_16577049.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
gi|422512035|ref|ZP_16588172.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
gi|422540388|ref|ZP_16616256.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
gi|422541709|ref|ZP_16617566.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
gi|422548242|ref|ZP_16624057.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
gi|422550342|ref|ZP_16626141.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
gi|422558784|ref|ZP_16634521.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
gi|422561728|ref|ZP_16637408.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
gi|422571488|ref|ZP_16647071.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
gi|422579829|ref|ZP_16655348.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
gi|289154718|gb|EFD03404.1| tRNA nucleotidyltransferase [Propionibacterium acnes SK187]
gi|313763384|gb|EFS34748.1| ribonuclease PH [Propionibacterium acnes HL013PA1]
gi|313814692|gb|EFS52406.1| ribonuclease PH [Propionibacterium acnes HL059PA1]
gi|313828238|gb|EFS65952.1| ribonuclease PH [Propionibacterium acnes HL063PA2]
gi|314914538|gb|EFS78369.1| ribonuclease PH [Propionibacterium acnes HL005PA4]
gi|314917606|gb|EFS81437.1| ribonuclease PH [Propionibacterium acnes HL050PA1]
gi|314919638|gb|EFS83469.1| ribonuclease PH [Propionibacterium acnes HL050PA3]
gi|314930289|gb|EFS94120.1| ribonuclease PH [Propionibacterium acnes HL067PA1]
gi|314957645|gb|EFT01748.1| ribonuclease PH [Propionibacterium acnes HL002PA1]
gi|314968972|gb|EFT13070.1| ribonuclease PH [Propionibacterium acnes HL037PA1]
gi|315098009|gb|EFT69985.1| ribonuclease PH [Propionibacterium acnes HL059PA2]
gi|315102645|gb|EFT74621.1| ribonuclease PH [Propionibacterium acnes HL046PA1]
gi|315110460|gb|EFT82436.1| ribonuclease PH [Propionibacterium acnes HL030PA2]
gi|327451224|gb|EGE97878.1| ribonuclease PH [Propionibacterium acnes HL087PA3]
gi|327452581|gb|EGE99235.1| ribonuclease PH [Propionibacterium acnes HL083PA2]
gi|328751977|gb|EGF65593.1| ribonuclease PH [Propionibacterium acnes HL025PA2]
gi|328754779|gb|EGF68395.1| ribonuclease PH [Propionibacterium acnes HL087PA1]
gi|365740009|gb|AEW84211.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742252|gb|AEW81946.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744506|gb|AEW79703.1| ribonuclease PH [Propionibacterium acnes TypeIA2 P.acn33]
Length = 254
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 28/234 (11%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSVL 69
R DGRR +LR +R G SQ++GS + G T VL A+V P K G
Sbjct: 16 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVTEGVPRWRKG---SGLGW 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +Y M +T ER R K T EIS + +++ A + + + I + +V
Sbjct: 73 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 132
Query: 126 LQADGGNFCACVNAATLALIDA--------GI---PMREYVVACSASLAGDTPLVDISHL 174
LQADGG A + A +ALIDA G+ P+ V A S + P++D+++
Sbjct: 133 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYE 192
Query: 175 EETLGGPNLTVAALPLSGKVAVMEL-----SQKLHLDHLPRVLDCALKGCADIH 223
E++ ++ V +SG +E+ + + L +LD A GCA +
Sbjct: 193 EDSRADTDMNVV---MSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLK 243
>gi|261213164|ref|ZP_05927447.1| ribonuclease PH [Vibrio sp. RC341]
gi|422908743|ref|ZP_16943414.1| ribonuclease PH [Vibrio cholerae HE-09]
gi|260837582|gb|EEX64276.1| ribonuclease PH [Vibrio sp. RC341]
gi|341638702|gb|EGS63341.1| ribonuclease PH [Vibrio cholerae HE-09]
Length = 238
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL--AAVYGPRPVRNKSIKVHGSV 68
+R D R ++R I+ + ++GS +E GNTKVL A++ P + +K G
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNASIEEGVP---RWLKGQGKG 57
Query: 69 LINFQYSMAVFSTGERKTRPRGDRK----TSEISLQLRQAVSAAIMSEVHPRSQIDIFVE 124
+ +Y M +T R R + K T EI + +++ A + E I + +
Sbjct: 58 WVTAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCD 117
Query: 125 VLQADGGNFCACVNAATLALIDAGI-----------PMREYVVACSASLAGDTPLVDISH 173
V+QADGG A + A++AL DA PM+ +V A S + G+ L D+ +
Sbjct: 118 VIQADGGTRTASITGASVALADAFAHLMAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEY 177
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAI 225
+E++ ++ V + + ++ H L +L A KG ADI A+
Sbjct: 178 VEDSAADTDMNVVMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAV 231
>gi|334119523|ref|ZP_08493609.1| Polyribonucleotide nucleotidyltransferase [Microcoleus vaginatus
FGP-2]
gi|333458311|gb|EGK86930.1| Polyribonucleotide nucleotidyltransferase [Microcoleus vaginatus
FGP-2]
Length = 717
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 10 GLRNDGRRGHELRKIRCRLGVF-SQSDGSAYIEQGNTKVL-AAVYG-PRPVRNKSIKVHG 66
G+R DGR+ E+R++ CR+GV S+ GS +G T+VL AA G P ++ +H
Sbjct: 322 GVRVDGRKLDEVRQVSCRVGVLPSRVHGSGLFNRGLTQVLSAATLGTPGDAQDLGDDLHP 381
Query: 67 SVLINF--QYSMAVFSTGERK-TRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFV 123
+ Y+ FS GE K R G R+ +L R + E P I +
Sbjct: 382 QQDKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERALLPVLPSKEDFPYV-IRVVS 440
Query: 124 EVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGDTP--LVDISHLEETLG 179
EVL +DG V A+TLAL+DAG+P+ + V + L GD L DI +E+ LG
Sbjct: 441 EVLSSDGSTSMGSVCASTLALMDAGVPLSQPVSGAAMGLIKEGDEVRILTDIQAIEDFLG 500
Query: 180 GPNLTVA 186
+ VA
Sbjct: 501 DMDFKVA 507
>gi|288921256|ref|ZP_06415540.1| ribonuclease PH [Frankia sp. EUN1f]
gi|288347346|gb|EFC81639.1| ribonuclease PH [Frankia sp. EUN1f]
Length = 256
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 107/239 (44%), Gaps = 23/239 (9%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR+ +LR I G ++GSA I G T+VL A V + K G +
Sbjct: 2 IRVDGRKTDQLRDITIVRGWQEHAEGSALISAGLTRVLCAASVTEGV-PRWRKGSGLGWV 60
Query: 71 NFQYSMAVFSTGERKTRPRGDR---------KTSEISLQLRQAVSAAIMSEVHPRSQIDI 121
+YSM R T R DR +T EIS + +++ AAI + + I I
Sbjct: 61 TAEYSML-----PRATHTRNDRESVRGRIGGRTHEISRLIGRSLRAAIDLKALGENTIAI 115
Query: 122 FVEVLQADGGNFCACVNAATLALIDA----GIP--MREYVVACSASLAGDTPLVDISHLE 175
+VL ADGG A + A +AL DA G P + V A S + P++D+++ E
Sbjct: 116 DCDVLLADGGTRTAAITGAYVALADACRWLGRPSAIVTSVCAVSVGIVKGVPMLDLAYTE 175
Query: 176 ETLGGPNLTVAALPLSGKVAVMELSQKLHLDH--LPRVLDCALKGCADIHAILDTAIKQ 232
++ ++ V G V V ++ D L +L+ A GC + I + A+ Q
Sbjct: 176 DSTADTDMNVVCTGTGGFVEVQGTAEGTPFDRAALDELLNLATAGCNRLTEIQNAALAQ 234
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,921,927,683
Number of Sequences: 23463169
Number of extensions: 153337383
Number of successful extensions: 345211
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 5998
Number of HSP's that attempted gapping in prelim test: 334991
Number of HSP's gapped (non-prelim): 8516
length of query: 263
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 123
effective length of database: 9,074,351,707
effective search space: 1116145259961
effective search space used: 1116145259961
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)