BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18119
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 285 bits (729), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL RVL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 236
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 284 bits (727), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
++ + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + D+H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHV 236
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 281 bits (720), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 177/235 (75%), Gaps = 3/235 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-N 59
++LL++ G R DGRR ELRKI+ R+GVF+Q+DGSAYIEQGNTK LA VYGP +R +
Sbjct: 4 LELLSDQG--YRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGS 61
Query: 60 KSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQI 119
+S + L+N QYS A FSTGERK RP GDRK+ E+ LQLRQ AAI++++HPRSQI
Sbjct: 62 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 121
Query: 120 DIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG 179
DI+V+VLQADGG + ACVNAATLA++DAGIPMR++V ACSA T L D+SH+EE G
Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAG 181
Query: 180 GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
GP L +A LP SG++A++E+ +LH DHL +VL+ A + +H +LD ++QH+
Sbjct: 182 GPQLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHV 236
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 147/234 (62%), Gaps = 3/234 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M +++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP +
Sbjct: 1 MSIISEHG--FRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESK-A 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK RPRGDRK++EIS L +A + I++E PRSQID
Sbjct: 58 SKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQID 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADVYECLAVVAQQHL 231
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 148/234 (63%), Gaps = 3/234 (1%)
Query: 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK 60
M++++E+G R DGRR ++R I RLG+ ++GS Y+E GNTKVL AVYGP ++
Sbjct: 1 MNIISEHG--FRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS- 57
Query: 61 SIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQID 120
S ++ I QYS FS ERK R RGDRK++EIS L +A + I++E PRSQ+D
Sbjct: 58 SKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLD 117
Query: 121 IFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGG 180
IF EV+Q DG N ACVNA +LAL DAGIPM+ A + + P+VD++ EET
Sbjct: 118 IFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLL 177
Query: 181 PNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
P +T+A + +V ++EL +LH+DHL V+D A CAD++ L +QHL
Sbjct: 178 PRVTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHL 231
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 143/235 (60%), Gaps = 1/235 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G K+LAAVYGPR + K ++ +
Sbjct: 15 GRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ IDIF+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARGLG 244
L + ++++ L D + A+KG ++ A+K+ +K+A G G
Sbjct: 194 LKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAEEVGGG 248
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 142/229 (62%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGRR +ELRKI +GV +DGSAYIE G K+LAAVYGPR + K ++ + +
Sbjct: 15 GRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAV 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAG+PMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 141/223 (63%), Gaps = 1/223 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
+R DGR ELR ++ G+ ++DGS+Y+E G K+L AVYGPR + + ++ +I
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR++ EIS +A+ A++ E PRS ID+F+EVL+A+G
Sbjct: 76 RCRYNMAPFSVEERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G CA + AA++AL DAGIPMR+ VVAC+A GD ++D+S E+ G ++ VA LP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ ++ +++ L + R LD A++GC IH + A+++
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKR 237
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 142/229 (62%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ ++GV ++GSAYIE G K++AAVYGPR + K ++ +
Sbjct: 15 GRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V ACSA ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 194 IKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV +DGSAY+E G KVLAAVYGPR + K ++ +
Sbjct: 15 GKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS +R A+ A++ + PR+ ID+F+E+LQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPM++ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L D + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLKIA 242
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 141/229 (61%), Gaps = 1/229 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ +ELR I+ +GV ++GSAYIE G K++AAVYGPR + K ++ +
Sbjct: 15 GRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +P
Sbjct: 134 AGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
L + ++++ L D + A+KG ++ A+K+ +K+A
Sbjct: 194 LKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 143/230 (62%), Gaps = 1/230 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G R DGR+ +ELR I+ ++GV ++GSAYIE G K++AAVYGPR + +K ++
Sbjct: 14 NGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRA 73
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y+MA FS ERK +P DR++ EIS ++ A+ A++ E+ PR+ ID+F+EVLQA
Sbjct: 74 ILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQA 132
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G A + AA+LAL DAGIPMR+ V AC+A ++D++ E+ G ++ VA +
Sbjct: 133 DAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIM 192
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
PL + ++++ L + + A+KG ++ A+K+ +K+A
Sbjct: 193 PLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIA 242
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 134/223 (60%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLRNDGRR E+R +CR+G+ +GSA+IE GNTKVL V GP KS
Sbjct: 11 GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+N + ++A FST + K R + DR+ L L+ I +E++PRSQI +++ VLQ D
Sbjct: 71 VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G +C+NA TLALIDAGIP++++V +A + L+D++ LEE+ LTVA L
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES-ALSWLTVAVLG 189
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
KV M+L +HLD+L V++ A+ G I+ + +A++Q
Sbjct: 190 NIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 139/223 (62%), Gaps = 1/223 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ E+R ++ + GV ++DGSAY+E G K++AAVYGPR + + + +
Sbjct: 13 GLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAV 72
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ F+Y+MA FS ERK RP DR++ EIS ++A+ AI +E +PR+ IDIFVEVLQAD
Sbjct: 73 VRFRYNMAPFSVDERK-RPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G CA ++AA++AL DAGI MR+ V AC+A ++D + E+ G ++ +A +P
Sbjct: 132 AGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
GK+ ++++ + + + A KGC ++ A+K+
Sbjct: 192 KEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKE 234
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 142/231 (61%), Gaps = 4/231 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR+ ELR I+ V ++DGS Y+E G KV+AAV+GPR V + ++ +
Sbjct: 15 GLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS ERK RP DR++ EIS ++A A IM E+ PRS IDIFVEVLQAD
Sbjct: 75 IRYRYNMAPFSVEERK-RPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ AC+NAA++AL+DAG+PM+ + + + A ++D E+ G ++ A L
Sbjct: 134 AGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLI 193
Query: 190 LSGK---VAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237
+GK +A++++ ++ D + + ++ A KG I+ + AI + I+V
Sbjct: 194 RNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEV 244
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 133/215 (61%), Gaps = 1/215 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR +ELR I+ + GV +++DGSAYIE G K++ VYGP+ K + ++
Sbjct: 17 LRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIV 76
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR+T EIS + +A+S++IM E PR++ID+++EVLQAD
Sbjct: 77 KARYNMAAFSVDERK-RPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADA 135
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G A + AAT+AL DAG+PMR+ VV C+A ++D+S E+ G ++ +A +P
Sbjct: 136 GTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMPK 195
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAI 225
+G + +M++ + D L + +D + I I
Sbjct: 196 TGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQI 230
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 167 bits (422), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
+R+DGR +LR IR +GV S +DGSA +E G T+V+AAVYGPR + + + +
Sbjct: 23 AIRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAI 82
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I +Y MA FST ERKT P R+ E+S +R+A+ A ++SE++PR+ ID+++EVLQ+D
Sbjct: 83 IRCRYHMAPFSTAERKT-PAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD 141
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A + AA+LAL DAGI MR+ V + ++DI +E+ ++ VA P
Sbjct: 142 GGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAP 201
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
KV +++L+ L D + L+ A KG I+ + A+++ ++V+ G
Sbjct: 202 SLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVEEG 254
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 1/227 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR+ ELR I+ LGV +DGSA E GNTK +AAVYGP+ + + + + +
Sbjct: 17 GKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAV 76
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FST ERK P R+ E+S +R+A+ +A++ E+ PR+ ID+F E+LQAD
Sbjct: 77 LRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQAD 135
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G+ + AA+LAL DAGIPMR+ + + A ++D++ E+ G ++ +A +P
Sbjct: 136 AGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMP 195
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
+V + +L+ + D + D A+KG I+ + A+K ++
Sbjct: 196 SLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 242
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 136/232 (58%), Gaps = 2/232 (0%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLI 70
LR DGR +ELR I+ GV +++DGSAYIE G K++ VYGP+ K + ++
Sbjct: 17 LRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVV 76
Query: 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADG 130
+Y+MA FS ERK RP DR+T EIS + +A+S++IM E PR++ID+++EVLQAD
Sbjct: 77 KARYNMAAFSVDERK-RPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADA 135
Query: 131 GNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPL 190
G A + AAT+AL DAGIPMR+ VV C+A ++D+S E+ G ++ +A +P
Sbjct: 136 GTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPK 195
Query: 191 SGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGARG 242
+G++ ++++ + D ++ I I A+ K+ G G
Sbjct: 196 TGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKY-KIEGIEG 246
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ E+R I+ LGV +DGSA E GNTKV+AAVYGP+ + + + +
Sbjct: 13 NGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y M FST ERK P R+ E+S +R+A+ + I+ E+ PR+ ID+F+EVLQA
Sbjct: 73 VLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G + AA++AL DAGIPMR+ + + A ++D++ E+ G ++ VA +
Sbjct: 132 DAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMM 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIK 231
P +VA+++L+ + + L+ A KG I+ + AI+
Sbjct: 192 PSLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIR 234
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGRR E+R ++ +GV S++DGS Y+E G K+L V+GPR + + S +
Sbjct: 15 GLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAV 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
I ++Y+MA FS +R RP R++ EIS R+A IM+E+ P++ IDIFVEVLQAD
Sbjct: 75 IRYRYNMASFSVEDR-ARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A +NA+++AL DAGIPM+ + +C+ ++D++ E+ G + V A+
Sbjct: 134 AGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPV-AMT 192
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234
G++ ++++ L D + + L+ KGC +I I +++
Sbjct: 193 QDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVLRKKF 237
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 135/230 (58%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GG+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + +
Sbjct: 11 GGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y MA FST + + P R+ EIS LR+A+ A+M E +PRS+ID+F+E+LQA
Sbjct: 71 VMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG A + AA+LAL DAGI MR+ V+ S L T ++D++ LE+ G +L V +
Sbjct: 131 DGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P + +++L D L L+ A+KG ++ A+K + +A
Sbjct: 191 PNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIA 240
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 1/228 (0%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGR+ ELR I+ LGV +DGSA E GNTKV+AAVYGP+ + + + +
Sbjct: 13 NGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKA 72
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
+ +Y M FST ERK P R+ E+S +R+A+ + I+ + PR+ IDIF+EVLQA
Sbjct: 73 SLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQA 131
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
D G + AA++AL DAGIPMR+ + + A + ++D++ E+ G ++ +A L
Sbjct: 132 DAGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVL 191
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236
P G+V +++L+ + D R + A KG + I+A+ A+K ++
Sbjct: 192 PSLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALKNKYLE 239
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 1/230 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R+DGR +LR +R ++G+ +DGSA +E G T+VLAAVYGPR + +
Sbjct: 15 GRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAA 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST ERK+ P R+ E+S +R+A+ +++E PR+ ID+F+EVLQAD
Sbjct: 75 LRVRYHMAPFSTDERKS-PAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG A V AA+LAL DAGIPMR V + +VD+ LE+ G ++ VAA P
Sbjct: 134 GGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239
G++ +++L+ L + L AL+ + + AI++ ++V G
Sbjct: 194 DIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYLEVGG 243
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G R DGR E R+I + G +DGS+YIE G+ K+L V+GPR V K + + +
Sbjct: 15 GKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M FS GERK P R+ EIS +++A+ A+M E PR+ +D+F+EVLQAD
Sbjct: 75 LRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG CA + AA++AL DAGIPMR+ V A +A DT ++D+++ E+ G ++ + +P
Sbjct: 134 GGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
K+ +++L L + + + + GC ++ + A+
Sbjct: 194 NLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 150 bits (380), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 132/232 (56%)
Query: 7 YGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHG 66
+ G+R DGR ++R++ +G+ S +DGSA + G T +AAVYGPR + + + +
Sbjct: 9 FQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPD 68
Query: 67 SVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVL 126
++ +Y MA FST + + P R+ EIS LR+A+ A++ E +PRS+ID+F+E+L
Sbjct: 69 RGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEIL 128
Query: 127 QADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVA 186
QADG A + AA+LAL DAG+ MR+ V+ S L ++D++ LE+ G +L V
Sbjct: 129 QADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVG 188
Query: 187 ALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+P + +++L D L+ A+KG ++ A+K + +A
Sbjct: 189 YMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIA 240
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 137/226 (60%), Gaps = 1/226 (0%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR+ E R++ GV + ++GSAYIE G+ K+LA ++GPR V K + + +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y M+ FS ERK +P R+ EIS +++A+ ++M E PR+ +D+F+EVLQAD
Sbjct: 75 LRCRYHMSPFSVSERK-KPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
GG+ CA + AA++AL DAGIPMR+ V AC+A DT ++D+++ E+ G ++ V +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235
+V +++L L D R A+ GC ++ + A+
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKALSDRFF 239
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 135/229 (58%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
G+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + + +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ AI+ E +PRS+ID+FVE+LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGI MR+ VV S L T ++D++ LE+ G +L + +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ +++L D + L+ A++G ++ I A+K + +A
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIA 240
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 133/229 (58%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVL 69
GLR DGR ++R+++ ++G S +DGSA + G T +AAVYGPR + + + + +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 70 INFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQAD 129
+ +Y MA FST + + P R+ EIS LR+A+ A+M E +PRS+ID+F+E+LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 130 GGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALP 189
G A + AA+LAL DAGI MR+ VV S L T ++D++ LE+ G ++ V +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 190 LSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+ +++L + L A+KG ++ + A+K + +A
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREALKNKYMAIA 240
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
GLR DGRR +ELR+ + + DGS+Y+EQGN K++ V GP+ R KS
Sbjct: 11 GLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA 70
Query: 69 LINFQYSMAVFSTGER-KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
L+N ++ FS ER K+ + +R+ EI L + +M ++PR+ IDI + VL+
Sbjct: 71 LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLE 130
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAA 187
DGG + +N TLALIDAGI M +Y+ S L TPL+D + LEE +T+
Sbjct: 131 QDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AMSTVTLGV 189
Query: 188 LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQH 233
+ S K++++ + K+ LD L VL + G + ++D +++H
Sbjct: 190 VGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 134/230 (58%)
Query: 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSV 68
G+R DGR ++R+++ +GV S +DGSA + G T +AAVYGPR + + + +
Sbjct: 11 NGVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRG 70
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQA 128
++ +Y MA FST + + P R+ EIS LR+A+ A++ E +PRS+ID+F+E++QA
Sbjct: 71 VMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQA 130
Query: 129 DGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAAL 188
DG A + AA+LAL DAGI MR+ VV S L ++D++ LE+ G +L V +
Sbjct: 131 DGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYM 190
Query: 189 PLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
P + +++L + + L+ A+KG ++ I A+K + +A
Sbjct: 191 PNLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDALKNKYMSIA 240
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 17/239 (7%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPV--RNKSIKVHGS 67
G+R +G ++R + R G+ SQ+ GSAYIE GNTK++ +VYGP+ R+++ G
Sbjct: 35 GVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGR 90
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
++ +F+ +A FS +R +G + ++S L +++ + +PRSQID+ V VL+
Sbjct: 91 LVCDFR--LAPFSCVKRGAWIQGSEE-RDLSATLMESLRPGVCLHRYPRSQIDVNVMVLE 147
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEETLG-----GPN 182
DG V A++AL DAGI M + V+ C+ +G+ LVD S+ EE G N
Sbjct: 148 NDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDN 207
Query: 183 ---LTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238
+T+A LP +V+ + ++ D L + + GC ++ ++ A+ + + K A
Sbjct: 208 QGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKKA 266
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 3 LLTEYGGGLRNDGRRGH---ELRKIRCRLGVFSQSDGSAYIEQGN--TKVLAAVYGPRP- 56
+L+E GG + GRRG E R + R G+ SQ+ GSAY+E G+ TKVL AV+GPR
Sbjct: 21 VLSEEGG--KAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRER 78
Query: 57 -VRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHP 115
+ + + G +L + +++ + P G + LQL++++ A+ + +P
Sbjct: 79 GMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGP-SPRQAGLQLQESLEPAVRLDRYP 137
Query: 116 RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTPLVDISHL 174
R+++ ++V VL+ G A V+ A+LAL DAGI M + + C S G L+D
Sbjct: 138 RAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDD 197
Query: 175 EETLG-GPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAIL 226
EE G G ++++ LP +V+ + S + + + ++GC ++ +L
Sbjct: 198 EEEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVL 250
>sp|Q5RKV6|EXOS6_HUMAN Exosome complex component MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1
Length = 272
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 6 EYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPR---------- 55
E G R+ R LR + R G+ SQ+ GSAY+E G TKVL AV GPR
Sbjct: 25 EEAPGTRDPTR----LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGG 80
Query: 56 ---PVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSE 112
+ G +L +F+ A F+ G R+ P G + E++L L++A+ A+
Sbjct: 81 PAGAGGEAPAALRGRLLCDFR--RAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLG 137
Query: 113 VHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP--LV 169
+PR+Q+++ +L+ G A + AA LAL DAG+ M + VV C SLA G P L+
Sbjct: 138 RYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLL 197
Query: 170 DISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAILDT 228
D + LEE LTVA +P+ +VA + S + L + + L+GC ++ +L
Sbjct: 198 DPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257
Query: 229 AI 230
++
Sbjct: 258 SL 259
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSM 76
G LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + +
Sbjct: 25 GCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKI 84
Query: 77 AVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCAC 136
+ E K+R R R T E A ++ +HPR+ I + ++V+ G C
Sbjct: 85 GLPGVAE-KSRERLIRNTCE----------AVVLGTLHPRTSITVVLQVVSDAGSLLACC 133
Query: 137 VNAATLALIDAGIPMREYVVACSASLAGDTPLV 169
+NAA +AL+DAG+PMR + +L D LV
Sbjct: 134 LNAACMALVDAGVPMRALFCGVACALDSDGTLV 166
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRN-------------KSIKVHGS 67
LR + R G+ SQ+ GSAY+E G TKVL AV GPR + G
Sbjct: 36 LRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPAALRGR 95
Query: 68 VLINFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+L +F+ A FS R+ G + E+ L L++A+ A+ +PR+Q+++ +L+
Sbjct: 96 LLCDFR--RAPFSGRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLE 153
Query: 128 ADGGNFCACVNAATLALIDAGIPMREYVVACSASL-AGDTP--LVDISHLEETLGGPNLT 184
G A + AA LAL DAG+ M + VV C SL G +P L+D + LEE LT
Sbjct: 154 DGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSAAGLT 213
Query: 185 VAALPLSGKVA-VMELSQKLHLDHLPRVLDCALKGCADIHAILDTAI 230
VA +P+ +VA ++ + + + L+GC ++ +L +
Sbjct: 214 VALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCL 260
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 21 LRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVR-NKSIKVHGSVLINFQYSMAVF 79
LR C + S+ DGSA QG+T VLA VYGP V+ +K I ++ + + + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNA 139
E K+R R R T E A ++ +HPR+ I + ++V+ G C+NA
Sbjct: 88 GVAE-KSRERLVRNTCE----------AVVLGALHPRTSITVVLQVVSDAGSLLACCLNA 136
Query: 140 ATLALIDAGIPMREYVVACSASLAGDTPLV 169
A +AL+DAG+PMR + +L D LV
Sbjct: 137 ACMALVDAGVPMRALFCGVTCALDSDGNLV 166
>sp|B7IE23|PNP_THEAB Polyribonucleotide nucleotidyltransferase OS=Thermosipho africanus
(strain TCF52B) GN=pnp PE=3 SV=1
Length = 697
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
G+R DGR+ E+R I C +GV ++ GSA +G T+ L V P+ + +I G
Sbjct: 319 GIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEG 378
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FS GE K R G R+ L R A+ A + SE + + E+
Sbjct: 379 TKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAER-ALKAVVPSEEEFPYVVRVVSEI 437
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL----AGDTPLVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P+R +V + L + L DI LE+ G
Sbjct: 438 LESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQGLEDHWGDM 497
Query: 182 NLTVA 186
+ VA
Sbjct: 498 DFKVA 502
>sp|Q8G7I0|RNPH_BIFLO Ribonuclease PH OS=Bifidobacterium longum (strain NCC 2705) GN=rph
PE=3 SV=2
Length = 248
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSVL 69
+R DGR+ ELR +R +GS IE GNT+V+ A + P R + K G
Sbjct: 8 IRADGRKVDELRPVRITRHFTDAPEGSVLIECGNTRVMCTATFTPGVPRWR--KDSGLGW 65
Query: 70 INFQYSMAVFSTGERKTRP--RGD--RKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ +YSM +T ER R RG +T EIS + + + I + +QI + +V
Sbjct: 66 VTAEYSMLPRATAERTDRESVRGKIGGRTHEISRLIGRCLRGVIDMKALGENQIQLDCDV 125
Query: 126 LQADGGNFCACVNAATLALID-------------AGIPMREYVVACSASLAGDTPLVDIS 172
LQADGG A V A +AL+D A +++YV A S + TP++D+
Sbjct: 126 LQADGGTRTASVTGAYVALVDAVNWAEKHRHIKSASRVLKDYVSAVSVGVINGTPMLDLP 185
Query: 173 HLEETLGGPNLTVAALPLSGKVAVMELS-----QKLHLDHLPRVLDCALKGCADIHA 224
++E++ ++ VA ++G +E+ + + L +LD A KG ++ A
Sbjct: 186 YIEDSQAMTDMNVA---MTGSGTFIEIQGTAEHRPFNRAELGTLLDLAEKGNKELQA 239
>sp|P50597|RNPH_PSEAE Ribonuclease PH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=rph PE=1 SV=2
Length = 239
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>sp|Q02E28|RNPH_PSEAB Ribonuclease PH OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=rph PE=3 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>sp|B7V5M5|RNPH_PSEA8 Ribonuclease PH OS=Pseudomonas aeruginosa (strain LESB58) GN=rph
PE=3 SV=1
Length = 239
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>sp|A6VEE1|RNPH_PSEA7 Ribonuclease PH OS=Pseudomonas aeruginosa (strain PA7) GN=rph PE=3
SV=1
Length = 239
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 18/238 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M STGER R RG + +T EI + +++ AA+ + + I +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + AT+ALIDA G P+++ V A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232
+ +L V G + V ++ L +L+ A +G ++ + A+ +
Sbjct: 182 SAAETDLNVVMTDSGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE 239
>sp|A6LNF5|PNP_THEM4 Polyribonucleotide nucleotidyltransferase OS=Thermosipho
melanesiensis (strain BI429 / DSM 12029) GN=pnp PE=3
SV=1
Length = 699
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK---SIKVHG 66
G+R DGR E+R I C +GV ++ GSA +G T+ L V P+ + +I G
Sbjct: 320 GIRADGRTPEEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQIVDTIMEEG 379
Query: 67 SVLINFQYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
+ Y+ FS GE K R G R+ L R + A E P + + E+
Sbjct: 380 TKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVAPDEEDFPYV-VRVVSEI 438
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISHLEETLGGP 181
L+++G + A V + +LAL+DAG+P++ +V + L D L DI LE+ G
Sbjct: 439 LESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVDEENEVVLTDIQGLEDHWGDM 498
Query: 182 NLTVA 186
+ VA
Sbjct: 499 DFKVA 503
>sp|B8E2S5|PNP_DICTD Polyribonucleotide nucleotidyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=pnp PE=3 SV=1
Length = 693
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY---GPRPVRNKSIKVHGSV 68
R DGRR +ELR + C +GV S+ GSA ++G T+VL+ V G + I+
Sbjct: 315 RVDGRRLNELRPVSCEVGVLSRVHGSALFQRGETQVLSVVTLGAGEEQIIESVIESEPKR 374
Query: 69 LINFQYSMAVFSTGERKTRPRGDRKTSEI---SLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
I+ Y+ FS GE K P K EI +L R + E P + I + EV
Sbjct: 375 YIH-HYNFPPFSVGEAK--PLRGPKRREIGHGALAERALLPLIPKEEEFPYT-IRVVSEV 430
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGD----TPLVDISHLEETLGGP 181
L ++G A V ++L+L+DAG+P++ +V + L + L DI LE+ LGG
Sbjct: 431 LSSNGSTSMASVCGSSLSLMDAGVPIKTHVAGVAMGLIKEGEKFEVLTDIQGLEDALGGM 490
Query: 182 NLTVA 186
+ +A
Sbjct: 491 DFKIA 495
>sp|Q3K4M0|RNPH_PSEPF Ribonuclease PH OS=Pseudomonas fluorescens (strain Pf0-1) GN=rph
PE=3 SV=1
Length = 240
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDLTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALIDA------------GIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+DA G P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKGGDPLKQMIGAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ + L +L+ A KG +I + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPEELNAMLELAKKGMNEIFELQKAAL 238
>sp|B5YHN2|PNP_THEYD Polyribonucleotide nucleotidyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=pnp PE=3 SV=1
Length = 710
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 9/185 (4%)
Query: 10 GLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVL-AAVYGPRPVRNKSIKVHGSV 68
G+R DGR+ E+R I C +G+ + GSA +G T+ L A G K + G +
Sbjct: 318 GIRADGRKSDEIRPITCMIGILPRVHGSALFTRGETQALVATTLGTSEDEQKVDSLEGEI 377
Query: 69 LINF--QYSMAVFSTGERKT-RPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEV 125
F Y+ FS GE K R G R+ L R A+S I S+ I + ++
Sbjct: 378 FKTFMLHYNFLPFSVGEVKPLRAPGRREIGHGYLAER-ALSYVIPSKDEFPYTIRVVSDI 436
Query: 126 LQADGGNFCACVNAATLALIDAGIPMREYVVACSASL--AGDTPLV--DISHLEETLGGP 181
L+++G + A V ATL+L+DAG+P++ V + L GD +V DI +E+ G
Sbjct: 437 LESNGSSSMATVCGATLSLMDAGVPIKAPVAGVAMGLIKEGDKTVVLTDILGMEDHYGDM 496
Query: 182 NLTVA 186
+ VA
Sbjct: 497 DFKVA 501
>sp|C3K479|RNPH_PSEFS Ribonuclease PH OS=Pseudomonas fluorescens (strain SBW25) GN=rph
PE=3 SV=1
Length = 240
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 23/239 (9%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVENGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFV--EV 125
+Y M +TGER R RG + +T EI + +++ AA+ ++ + ++V +V
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAAL--DMSKLGDVTLYVDCDV 119
Query: 126 LQADGGNFCACVNAATLALID------------AGIPMREYVVACSASLAGDTPLVDISH 173
+QADGG A + A +AL+D AG P+++ + A S + P++D+ +
Sbjct: 120 IQADGGTRTASITGAMVALVDALKVIKKRGGLKAGDPLKQMIAAVSVGMYQGEPVLDLDY 179
Query: 174 LEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
LE++ +L V G + V ++ L +L A KG +I + + A+
Sbjct: 180 LEDSAAETDLNVVMTSTGGFIEVQGTAEGAPFQPADLNAMLALAQKGMTEIFELQNAAL 238
>sp|A4Y0L7|RNPH_PSEMY Ribonuclease PH OS=Pseudomonas mendocina (strain ymp) GN=rph PE=3
SV=1
Length = 239
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 12 RNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLIN 71
R GR +LR IR ++GS +E G+TKV+ V V + +K G +
Sbjct: 3 RPSGRAADQLRSIRITRNYTKHAEGSVLVEFGDTKVICTVSVESGV-PRFLKGQGQGWLT 61
Query: 72 FQYSMAVFSTGERKTR--PRGDR--KTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQ 127
+Y M +TGER R RG + +T EI + +++ AA+ + + + +V+Q
Sbjct: 62 AEYGMLPRATGERNQREASRGKQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQ 121
Query: 128 ADGGNFCACVNAATLALIDA-----------GIPMREYVVACSASLAGDTPLVDISHLEE 176
ADGG A + A +ALIDA G P+++ + A S + P++D+ +LE+
Sbjct: 122 ADGGTRTASITGAMVALIDALKVLKKRGSLKGEPLKQMIAAVSVGIYQGEPVLDLDYLED 181
Query: 177 TLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHAILDTAI 230
+ +L V G + V ++ + +L A KG +I + A+
Sbjct: 182 SAAETDLNVVMTNAGGFIEVQGTAEGAPFQPEEFNAMLALAQKGMNEIFELQKAAL 237
>sp|Q2RJL9|PNP_MOOTA Polyribonucleotide nucleotidyltransferase OS=Moorella thermoacetica
(strain ATCC 39073) GN=pnp PE=3 SV=1
Length = 747
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSI 62
+LTE G+R DGR E+R I C +GV S++ GS +G T+VL V P+ ++ I
Sbjct: 325 ILTE---GIRVDGRTLEEIRPITCEVGVLSRTHGSGLFTRGETQVL-TVTTLGPISDEQI 380
Query: 63 ----KVHGSVLINFQYSMAVFSTGE-RKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRS 117
V S Y+ +S GE R R G R+ +L R A+ I SE
Sbjct: 381 LDDLGVDESKRYMHHYNFPPYSVGEARPIRAPGRREIGHGALAER-ALEPMIPSEEEFPY 439
Query: 118 QIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTP----LVDISH 173
I + EVL ++G V +TL+L+DAG+P++ V + L + L DI
Sbjct: 440 AIRLVSEVLGSNGSTSMGSVCGSTLSLMDAGVPIKAPVAGVAMGLVKENDQVAILTDIQG 499
Query: 174 LEETLGGPNLTVA 186
LE+ LG + VA
Sbjct: 500 LEDALGDMDFKVA 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,380,488
Number of Sequences: 539616
Number of extensions: 3748287
Number of successful extensions: 11350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 8890
Number of HSP's gapped (non-prelim): 1490
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)