Query psy18119
Match_columns 263
No_of_seqs 157 out of 1130
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:00:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nn6_B Exosome complex exonucl 100.0 6.1E-55 2.1E-59 379.9 30.6 238 1-240 8-246 (249)
2 2wnr_B Probable exosome comple 100.0 1E-54 3.5E-59 376.6 30.1 232 1-235 8-239 (240)
3 2po1_A Probable exosome comple 100.0 8.2E-54 2.8E-58 372.8 29.4 236 1-239 8-243 (249)
4 2wp8_B Exosome complex compone 100.0 1E-53 3.4E-58 371.6 28.4 235 1-238 4-240 (246)
5 3m7n_D Probable exosome comple 100.0 4E-53 1.4E-57 369.6 28.7 233 2-238 10-245 (258)
6 2je6_B RRP41, exosome complex 100.0 5E-53 1.7E-57 368.1 28.7 232 2-236 13-244 (250)
7 2nn6_F MTR3, exosome component 100.0 1E-50 3.5E-55 357.6 22.3 236 2-240 19-269 (272)
8 3b4t_A Ribonuclease PH; RNAse, 100.0 6E-50 2E-54 350.9 24.7 239 9-250 4-261 (262)
9 2nn6_D Exosome complex exonucl 100.0 4.6E-49 1.6E-53 340.5 27.4 216 9-234 14-234 (237)
10 1oys_A Ribonuclease PH; transf 100.0 1.6E-49 5.4E-54 345.0 22.4 224 11-236 1-243 (245)
11 3dd6_A Ribonuclease PH; exorib 100.0 1.1E-48 3.9E-53 341.1 26.9 224 9-234 9-251 (255)
12 1r6l_A Ribonuclease PH; beta-a 100.0 2.8E-48 9.4E-53 336.1 28.1 219 11-231 2-238 (239)
13 1udn_A Ribonuclease PH, RNAse 100.0 1.4E-48 4.8E-53 340.9 25.8 220 11-232 1-238 (255)
14 3hkm_A OS03G0854200 protein; R 100.0 7.1E-48 2.4E-52 334.2 24.5 216 9-236 2-236 (246)
15 2po1_B Probable exosome comple 100.0 1.9E-47 6.4E-52 337.6 27.0 220 9-233 24-275 (277)
16 2je6_A RRP42, exosome complex 100.0 1.1E-46 3.7E-51 332.7 26.7 218 9-231 27-276 (277)
17 2wnr_A Probable exosome comple 100.0 1.3E-46 4.3E-51 331.3 26.9 218 9-231 22-270 (271)
18 3m7n_G Probable exosome comple 100.0 3.3E-46 1.1E-50 326.6 27.0 215 9-228 20-258 (259)
19 2nn6_C Exosome complex exonucl 100.0 2.1E-46 7.3E-51 331.0 23.1 220 9-232 22-274 (278)
20 2nn6_A Polymyositis/scleroderm 100.0 7.5E-45 2.6E-49 330.3 26.7 244 9-259 37-317 (358)
21 4aid_A Polyribonucleotide nucl 100.0 3.1E-45 1.1E-49 355.6 22.8 251 3-258 324-590 (726)
22 3u1k_A Polyribonucleotide nucl 100.0 2.4E-45 8.4E-50 353.1 21.4 250 3-258 312-587 (630)
23 2wp8_A Exosome complex compone 100.0 1.9E-44 6.5E-49 322.4 24.9 224 9-239 21-292 (305)
24 2nn6_E Exosome complex exonucl 100.0 3.5E-45 1.2E-49 327.1 19.9 223 9-235 34-293 (305)
25 1e3p_A Guanosine pentaphosphat 100.0 1.2E-44 4E-49 354.1 24.4 251 2-258 348-618 (757)
26 3gme_A Polyribonucleotide nucl 100.0 1.3E-44 4.5E-49 341.9 23.4 227 3-234 308-545 (549)
27 3cdi_A Polynucleotide phosphor 100.0 6.1E-44 2.1E-48 347.9 24.9 251 3-258 314-580 (723)
28 3krn_A Protein C14A4.5, confir 100.0 3.1E-45 1.1E-49 313.5 0.5 208 18-237 2-212 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 8.2E-35 2.8E-39 280.0 24.3 213 20-240 13-234 (630)
30 3gme_A Polyribonucleotide nucl 100.0 7.9E-30 2.7E-34 241.1 25.4 213 21-241 13-234 (549)
31 4aid_A Polyribonucleotide nucl 100.0 2.7E-29 9.2E-34 244.1 25.7 212 20-239 26-246 (726)
32 3cdi_A Polynucleotide phosphor 100.0 4.3E-29 1.5E-33 243.6 25.8 211 22-240 20-239 (723)
33 1e3p_A Guanosine pentaphosphat 100.0 1.6E-28 5.5E-33 240.3 25.1 209 21-235 36-269 (757)
34 2k9i_A Plasmid PRN1, complete 53.1 13 0.00046 22.7 3.3 37 202-238 15-51 (55)
35 2kel_A SVTR protein, uncharact 41.4 13 0.00046 23.6 1.8 34 203-236 20-53 (56)
36 1xpp_A TA1416, DNA-directed RN 36.8 1.1E+02 0.0037 22.4 6.5 79 156-235 21-105 (115)
37 1ybx_A Conserved hypothetical 35.6 1.4E+02 0.0048 22.7 7.1 46 175-221 70-119 (143)
38 2cpg_A REPA protein, transcrip 25.8 42 0.0014 19.4 2.2 35 202-236 8-42 (45)
39 2gpe_A Bifunctional protein PU 21.4 60 0.002 19.5 2.3 39 202-240 9-47 (52)
40 1j8b_A YBAB; hypothetical prot 20.2 2.5E+02 0.0085 20.2 6.5 46 175-221 37-85 (112)
No 1
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=6.1e-55 Score=379.91 Aligned_cols=238 Identities=57% Similarity=0.952 Sum_probs=220.5
Q ss_pred CccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCC-CcCCCCeEEEEEEEeeCCC
Q psy18119 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNK-SIKVHGSVLINFQYSMAVF 79 (263)
Q Consensus 1 ~e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~-~~~~~~~~~l~v~~~~~~~ 79 (263)
||++.+ +|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+++.. ....++++.|.++|+++||
T Consensus 8 ~~~i~~--~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~ 85 (249)
T 2nn6_B 8 LELLSD--QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 85 (249)
T ss_dssp ---CCB--TTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTT
T ss_pred hhhccc--CCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCC
Confidence 688888 9999999999999999999999999999999999999999999998776432 2246889999999999999
Q ss_pred CCccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEE
Q psy18119 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACS 159 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt 159 (263)
++++++++++++.++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|
T Consensus 86 a~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs 165 (249)
T 2nn6_B 86 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACS 165 (249)
T ss_dssp TSSSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEE
T ss_pred cccccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEE
Confidence 99887766678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18119 160 ASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239 (263)
Q Consensus 160 ~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~ 239 (263)
++++++.+++||+..||..+++.++|++++..++|+.+++.|+++.+++.++++.|.+++++++++++++|+++..++..
T Consensus 166 ~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 245 (249)
T 2nn6_B 166 AGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASI 245 (249)
T ss_dssp EEEETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999997678999999999999999999999999999999999999999999887664
Q ss_pred c
Q psy18119 240 A 240 (263)
Q Consensus 240 ~ 240 (263)
.
T Consensus 246 ~ 246 (249)
T 2nn6_B 246 L 246 (249)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1e-54 Score=376.58 Aligned_cols=232 Identities=40% Similarity=0.683 Sum_probs=210.9
Q ss_pred CccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCC
Q psy18119 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80 (263)
Q Consensus 1 ~e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~ 80 (263)
||++.+ +|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+..+.....++++.|.++|+++|++
T Consensus 8 ~~~~l~--~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a 85 (240)
T 2wnr_B 8 DQLKTS--PSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFS 85 (240)
T ss_dssp ---------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTS
T ss_pred eEeecc--cCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCC
Confidence 688888 999999999999999999999999999999999999999999999877555333568899999999999999
Q ss_pred CccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEE
Q psy18119 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA 160 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~ 160 (263)
+++++ ++.++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+
T Consensus 86 ~~~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~ 164 (240)
T 2wnr_B 86 VEERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAA 164 (240)
T ss_dssp SSSCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEE
T ss_pred cCCcc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEE
Confidence 98776 44688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 161 SLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235 (263)
Q Consensus 161 ~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~ 235 (263)
+++++.+++||+..||..+++.++|++++..++|+.+++.|.++.+++.++++.|.++|+++++.++++|+++..
T Consensus 165 g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 239 (240)
T 2wnr_B 165 GKVGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRYG 239 (240)
T ss_dssp EESSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999778899999999999999999999999999999999999999988754
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=8.2e-54 Score=372.82 Aligned_cols=236 Identities=39% Similarity=0.659 Sum_probs=219.8
Q ss_pred CccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCC
Q psy18119 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFS 80 (263)
Q Consensus 1 ~e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~ 80 (263)
||++.+ +|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+..+.....++++.|.|+|+++||+
T Consensus 8 ~~~~l~--~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a 85 (249)
T 2po1_A 8 LKLIDE--NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85 (249)
T ss_dssp -CCSBC--SSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGG
T ss_pred eEEecc--cCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcc
Confidence 678887 999999999999999999999999999999999999999999999877655324568899999999999999
Q ss_pred CccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEE
Q psy18119 81 TGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSA 160 (263)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~ 160 (263)
+++++. +.++.++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|+
T Consensus 86 ~~~~~~-~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~ 164 (249)
T 2po1_A 86 VEERKK-PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAA 164 (249)
T ss_dssp SSSCCC-SSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEE
T ss_pred cccccC-CCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEE
Confidence 987653 3478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18119 161 SLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239 (263)
Q Consensus 161 ~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~ 239 (263)
+++++.+++||+..||..+++.++|++++..++|+++++.|.++.+++.++++.|.+++++++++++++++++..++..
T Consensus 165 g~~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 243 (249)
T 2po1_A 165 GKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243 (249)
T ss_dssp EEETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999997778999999999999999999999999999999999999999998876553
No 4
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-53 Score=371.64 Aligned_cols=235 Identities=34% Similarity=0.549 Sum_probs=207.0
Q ss_pred CccccCCCCCccCCCCCCCCCcceEEEeCCCCCC-ceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCC
Q psy18119 1 MDLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQS-DGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVF 79 (263)
Q Consensus 1 ~e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a-~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~ 79 (263)
||++++ +|+|+|||.++|+|++.+++|+++++ +|||+|++|+|+|+|+|++|.++.+.....++++.|.|+|+++||
T Consensus 4 ~~~~~~--~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~ 81 (246)
T 2wp8_B 4 LEIYSP--EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKF 81 (246)
T ss_dssp CCSSCT--TSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--
T ss_pred hhhhcc--cCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCc
Confidence 789998 99999999999999999999999999 999999999999999999988754422346899999999999999
Q ss_pred CCccccCC-CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEE
Q psy18119 80 STGERKTR-PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC 158 (263)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~av 158 (263)
+++++.++ +++++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++
T Consensus 82 a~~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~av 161 (246)
T 2wp8_B 82 SKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGI 161 (246)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEE
T ss_pred ccccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEE
Confidence 99887655 45678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18119 159 SASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238 (263)
Q Consensus 159 t~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~ 238 (263)
|+|++++.+++|||..|| .+++.++|++.+..++|+++++.|+++.+++.++++.|.+++++++++++++++++..+..
T Consensus 162 s~g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 240 (246)
T 2wp8_B 162 SVGLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRV 240 (246)
T ss_dssp EEEEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 9999999999777899999999999999999999999999999999999999999876543
No 5
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=4e-53 Score=369.61 Aligned_cols=233 Identities=39% Similarity=0.635 Sum_probs=216.2
Q ss_pred ccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCC
Q psy18119 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFST 81 (263)
Q Consensus 2 e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~ 81 (263)
++|. +|+|+|||.++|+|+|++++|++++++|||+|++|+|+|+|+|+||.++.+.....++++.|+++|+++||++
T Consensus 10 ~~i~---~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~ 86 (258)
T 3m7n_D 10 KLIV---DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSV 86 (258)
T ss_dssp CSEE---TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGS
T ss_pred HHHh---cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccc
Confidence 4455 7999999999999999999999999999999999999999999998876654345789999999999999998
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEEE
Q psy18119 82 GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS 161 (263)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~~ 161 (263)
.++++ +++++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|++
T Consensus 87 ~~r~~-~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg 165 (258)
T 3m7n_D 87 EERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVG 165 (258)
T ss_dssp SSCCC-SSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEE
T ss_pred ccccC-CCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEE
Confidence 87654 35789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeeEecCCchhhhcCCCeEEEEEeCCC---CcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18119 162 LAGDTPLVDISHLEETLGGPNLTVAALPLS---GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238 (263)
Q Consensus 162 ~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~---~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~ 238 (263)
++++.+|+||+..||..+++.++|++++.. ++|+++++.|+++.+++.+++++|.++|++++++++++++++..+..
T Consensus 166 ~i~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 245 (258)
T 3m7n_D 166 KADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIEVG 245 (258)
T ss_dssp EETTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999996567 89999999999999999999999999999999999999998776433
No 6
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=5e-53 Score=368.10 Aligned_cols=232 Identities=36% Similarity=0.625 Sum_probs=217.0
Q ss_pred ccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCC
Q psy18119 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFST 81 (263)
Q Consensus 2 e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~ 81 (263)
|++.+ +++|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.++.+.....++++.|.|+|+++|+++
T Consensus 13 ~~~l~--~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~ 90 (250)
T 2je6_B 13 KLILD--DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFST 90 (250)
T ss_dssp CSBCT--TSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSS
T ss_pred ceecC--CCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCcc
Confidence 67777 9999999999999999999999999999999999999999999998776543234688999999999999999
Q ss_pred ccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEEE
Q psy18119 82 GERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSAS 161 (263)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~~ 161 (263)
++++ ++++++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|++
T Consensus 91 ~~~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg 169 (250)
T 2je6_B 91 DERK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVG 169 (250)
T ss_dssp SSCC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEE
T ss_pred CCcc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEE
Confidence 8775 556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 162 LAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236 (263)
Q Consensus 162 ~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~ 236 (263)
++++.+|+|||..||..+++.++|+++++.++|+++++.|.++.+++.++++.|.+++++++++++++++++..+
T Consensus 170 ~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 244 (250)
T 2je6_B 170 KADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 244 (250)
T ss_dssp EETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-
T ss_pred EECCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999997678999999999999999999999999999999999999999887644
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1e-50 Score=357.59 Aligned_cols=236 Identities=31% Similarity=0.437 Sum_probs=207.2
Q ss_pred ccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcC-----------CCCeEEE
Q psy18119 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIK-----------VHGSVLI 70 (263)
Q Consensus 2 e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~-----------~~~~~~l 70 (263)
+|+.+ +++|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.++++..+. .++++.+
T Consensus 19 ~~~~~--~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 96 (272)
T 2nn6_F 19 LYAAD--EEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRL 96 (272)
T ss_dssp ------------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEE
T ss_pred ccccc--cCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEE
Confidence 34555 8999999999999999999999999999999999999999999999876653110 4578999
Q ss_pred EEEEeeCCCCCccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCC
Q psy18119 71 NFQYSMAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIP 150 (263)
Q Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp 150 (263)
.|+|.+.|+++++++. +++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+|||
T Consensus 97 ~v~~~~~p~a~~~~~~-~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP 175 (272)
T 2nn6_F 97 LCDFRRAPFAGRRRRA-PPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVE 175 (272)
T ss_dssp EEEEEECTTSSSSCCC-SCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEecCCCcCCccC-CCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999987653 457889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEEEEe---cCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCCh-hHHHHHHHHHHHHHHHHHHHH
Q psy18119 151 MREYVVACSASL---AGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHL-DHLPRVLDCALKGCADIHAIL 226 (263)
Q Consensus 151 ~~~~~~avt~~~---~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~-~~l~~~i~~A~~~~~~i~~~i 226 (263)
|+++++++++++ .++.+|+|||..||..+++.++|++++..++|+++++.|.++. ++|.++++.|.++++++++++
T Consensus 176 ~~~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~ 255 (272)
T 2nn6_F 176 MYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVL 255 (272)
T ss_dssp BSSCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 7789999999999999999999998778899999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q psy18119 227 DTAIKQHLIKVAGA 240 (263)
Q Consensus 227 ~~~l~~~~~~~~~~ 240 (263)
++++++...++.+.
T Consensus 256 ~~~l~~~~~~~~~~ 269 (272)
T 2nn6_F 256 QQSLVRAARRRGAA 269 (272)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccc
Confidence 99999998876654
No 8
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6e-50 Score=350.88 Aligned_cols=239 Identities=28% Similarity=0.309 Sum_probs=209.5
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC-
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR- 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~- 87 (263)
.|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+.. ...+++++|+|+|.++|++++++.+|
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~p~a~~~~~~Re 82 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-RKATGLGWLTAEYAMLPSATHSRSDRE 82 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCCH
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCc-cCCCCceEEEEEEEeCCCccccccccc
Confidence 6899999999999999999999999999999999999999999997763321 12367888999999999999877554
Q ss_pred ---CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHc------------CCCcc
Q psy18119 88 ---PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDA------------GIPMR 152 (263)
Q Consensus 88 ---~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~da------------gIp~~ 152 (263)
++++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+ +|||+
T Consensus 83 ~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~~ 162 (262)
T 3b4t_A 83 SVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLS 162 (262)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCBC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCccc
Confidence 357899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 153 EYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTA 229 (263)
Q Consensus 153 ~~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~ 229 (263)
++|+++|++++++.+|+|||..||..+++.++|++ +..++|+++++.| .++.++|.++++.|.+++++++++++++
T Consensus 163 ~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 241 (262)
T 3b4t_A 163 CAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVA-TDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDA 241 (262)
T ss_dssp SCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEEECCEEEECCCHHHHhccCceEEEEE-cCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 5678999999986 6999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCcccccc
Q psy18119 230 IKQHLIKVAGARGLGRKFQLG 250 (263)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~~ 250 (263)
++++..+...+.++. -++||
T Consensus 242 l~~~~~~~~~~~~~~-~~~~~ 261 (262)
T 3b4t_A 242 LALPYPGVLPQGPPP-PKAFG 261 (262)
T ss_dssp HTSCCSSCCC-----------
T ss_pred HhcchhccCccCCCC-ccccC
Confidence 998877666655443 33444
No 9
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.6e-49 Score=340.53 Aligned_cols=216 Identities=24% Similarity=0.376 Sum_probs=186.5
Q ss_pred CCccCCCCCCC----CCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccc
Q psy18119 9 GGLRNDGRRGH----ELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGER 84 (263)
Q Consensus 9 ~~~R~DGR~~~----e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 84 (263)
+++|+|||.++ |+|++++++|++++++|||+|++|+|+|+|+|+||.++++. ...++++.|+++|. |++
T Consensus 14 ~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~-~~~~~~g~l~~~~~--p~~---- 86 (237)
T 2nn6_D 14 RAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVS-KEIFNKATLEVILR--PKI---- 86 (237)
T ss_dssp -------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS----
T ss_pred cCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCccccc-ccCCCcEEEEEEec--CCC----
Confidence 78999999999 99999999999999999999999999999999999876553 34678899988886 443
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEEEec-
Q psy18119 85 KTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA- 163 (263)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~~~~- 163 (263)
++++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|++++
T Consensus 87 ---g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~~~ 163 (237)
T 2nn6_D 87 ---GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDS 163 (237)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEECT
T ss_pred ---CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEEec
Confidence 1357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 164 GDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHL 234 (263)
Q Consensus 164 ~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~ 234 (263)
++.+|+||+..||..+.+.++|++.+..++|+.+++.|+++.+++.++++.|.+++++++++++++++++.
T Consensus 164 ~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 234 (237)
T 2nn6_D 164 DGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRY 234 (237)
T ss_dssp TCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999976556899999999999999999999999999999999999998874
No 10
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=1.6e-49 Score=345.01 Aligned_cols=224 Identities=26% Similarity=0.328 Sum_probs=186.2
Q ss_pred ccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC---
Q psy18119 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR--- 87 (263)
Q Consensus 11 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--- 87 (263)
+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+.. ...++++.|.++|.++|++++++.+|
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPF-LRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGG-GTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCc-cCCCCceEEEEEEEeCCCcCccccccccc
Confidence 49999999999999999999999999999999999999999998764421 23578899999999999999877544
Q ss_pred -CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------CCccCce
Q psy18119 88 -PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAG-----------IPMREYV 155 (263)
Q Consensus 88 -~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag-----------Ip~~~~~ 155 (263)
++++.++++++++|+++|+++++++.||++.|+|+|+||++|||+++|+++|+++||+|+| +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 2478899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEecCCeeE-ecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 156 VACSASLAGDTPL-VDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIK 231 (263)
Q Consensus 156 ~avt~~~~~~~~l-vDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~ 231 (263)
+++|++++++.++ +|||..||..+++.++|++ +..++|+.+++.| +++.+++.+++++|.+++++++++++++++
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVIM-TGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEEE-cCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998777 9999999999999999999 6789999999985 699999999999999999999999999998
Q ss_pred HHHHH
Q psy18119 232 QHLIK 236 (263)
Q Consensus 232 ~~~~~ 236 (263)
++..+
T Consensus 239 ~~~~~ 243 (245)
T 1oys_A 239 DSLPE 243 (245)
T ss_dssp -----
T ss_pred hhhhh
Confidence 87654
No 11
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-48 Score=341.05 Aligned_cols=224 Identities=25% Similarity=0.352 Sum_probs=205.3
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC-
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR- 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~- 87 (263)
...|.|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.++. .+.++++.|.|+|.++|+++.++.+|
T Consensus 9 ~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~P~a~~~~~~Re 87 (255)
T 3dd6_A 9 HHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPF-MRGEGKGWVTAEYAMIPRATEQRTIRE 87 (255)
T ss_dssp --CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGG-GTTSSCCEEEEEEEECTTSSSSCCCCC
T ss_pred cccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCC-CCCCCceEEEEEEEECCCccccccccc
Confidence 5689999999999999999999999999999999999999999998653222 34678999999999999999887544
Q ss_pred ---CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHc-----------CCCccC
Q psy18119 88 ---PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDA-----------GIPMRE 153 (263)
Q Consensus 88 ---~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~da-----------gIp~~~ 153 (263)
+++++++.+++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+ +|||++
T Consensus 88 ~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~ 167 (255)
T 3dd6_A 88 SSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKD 167 (255)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCccC
Confidence 457899999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceeEEEEEecCCeeE-ecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 154 YVVACSASLAGDTPL-VDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTA 229 (263)
Q Consensus 154 ~~~avt~~~~~~~~l-vDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~ 229 (263)
+|+++|++++++.++ +|||..||..++..++|++ +..++|+++++.| +++.+++.++++.|.+++++++++++++
T Consensus 168 ~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va~-~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 246 (255)
T 3dd6_A 168 YLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIM-TGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 246 (255)
T ss_dssp CEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEEE-cCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 9999999999999999998 6789999999975 6999999999999999999999999999
Q ss_pred HHHHH
Q psy18119 230 IKQHL 234 (263)
Q Consensus 230 l~~~~ 234 (263)
+++..
T Consensus 247 l~~~~ 251 (255)
T 3dd6_A 247 LGDIV 251 (255)
T ss_dssp HGGGG
T ss_pred HHHHH
Confidence 87654
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=2.8e-48 Score=336.05 Aligned_cols=219 Identities=28% Similarity=0.389 Sum_probs=200.3
Q ss_pred ccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC---
Q psy18119 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR--- 87 (263)
Q Consensus 11 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--- 87 (263)
.|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+.. ...++++.|.|+|.+.|+++.++.+|
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~v~~~~~p~~~~~r~~Re~~ 80 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRF-LKGQGQGWLTAEYGMLPRSTGERNQREAS 80 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSC-CC---CCEEEEEEEECTTSSSSCCCCHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCc-cCCCCcEEEEEEEEeCCCccccccccccC
Confidence 39999999999999999999999999999999999999999997654321 23468899999999999998876544
Q ss_pred -CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------CCccCce
Q psy18119 88 -PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAG-----------IPMREYV 155 (263)
Q Consensus 88 -~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag-----------Ip~~~~~ 155 (263)
++++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+| |||+++|
T Consensus 81 ~G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~ 160 (239)
T 1r6l_A 81 RGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMV 160 (239)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCce
Confidence 3578899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 156 VACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIK 231 (263)
Q Consensus 156 ~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~ 231 (263)
+++|++++++.+++|||..||..+++.++|++ +..++++.+++.| +++.+++.++++.|.+++++++++++++++
T Consensus 161 ~avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 161 AAVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 5778999999875 699999999999999999999999999875
No 13
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=1.4e-48 Score=340.88 Aligned_cols=220 Identities=27% Similarity=0.369 Sum_probs=203.3
Q ss_pred ccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC---
Q psy18119 11 LRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR--- 87 (263)
Q Consensus 11 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--- 87 (263)
+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+.. ...++++.|.|+|.+.|+++.++.+|
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~-~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNW-LKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGG-GTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCC-CCCCCceEEEEEEEcCCCccccccccccC
Confidence 59999999999999999999999999999999999999999997764321 23578899999999999998877544
Q ss_pred -CCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------CCccCce
Q psy18119 88 -PRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAG-----------IPMREYV 155 (263)
Q Consensus 88 -~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag-----------Ip~~~~~ 155 (263)
++++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+| |||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 3578899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 156 VACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIKQ 232 (263)
Q Consensus 156 ~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~ 232 (263)
+++|++++++.+|+|||..||..+++.++|++ +..++++.+++.| +++.++|.++++.|.++++++++++++++++
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~-~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVVG-TGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 5778999999874 6999999999999999999999999999876
No 14
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=7.1e-48 Score=334.24 Aligned_cols=216 Identities=23% Similarity=0.348 Sum_probs=182.7
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 88 (263)
+|+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+||.+.++. ...++++.++++|. |+. +
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~-~~~~~~~~~~~~~~--P~~-------g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK-GENPEKASIEVVWK--PMT-------G 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCT-TSCSSSCEEEEEEE--CSS-------S
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcc-cCCCccEEEEEEeC--CCC-------C
Confidence 6899999999999999999999999999999999999999999998765443 24577888877664 421 1
Q ss_pred CCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEEEec-CCee
Q psy18119 89 RGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLA-GDTP 167 (263)
Q Consensus 89 ~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~~~~-~~~~ 167 (263)
++++++++++++|+++|+++++++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|++++++++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 356778999999999999999999999999999999999999999999999999999999999999999999998 7799
Q ss_pred EecCCchhhhcCCCeEEEEEeCCCCcEEEEEe------------------cccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 168 LVDISHLEETLGGPNLTVAALPLSGKVAVMEL------------------SQKLHLDHLPRVLDCALKGCADIHAILDTA 229 (263)
Q Consensus 168 lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~------------------~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~ 229 (263)
|+|||..||..+++.++|++. .. .+|.+++ .|.++++++.++++.|.+++++++++++++
T Consensus 152 llDpt~~Ee~~~~~~~~va~~-~~-~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 229 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVFP-NS-RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 229 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEEE-C---------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHhcCCeeEEEEEe-CC-ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999994 33 4666665 567999999999999999999999999999
Q ss_pred HHHHHHH
Q psy18119 230 IKQHLIK 236 (263)
Q Consensus 230 l~~~~~~ 236 (263)
|+++..+
T Consensus 230 l~~~~~~ 236 (246)
T 3hkm_A 230 LQKQAPG 236 (246)
T ss_dssp TC-----
T ss_pred HHhhhhc
Confidence 9877653
No 15
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=1.9e-47 Score=337.59 Aligned_cols=220 Identities=22% Similarity=0.288 Sum_probs=202.3
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY-GPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 87 (263)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+ +|.++.. ..++++.|.++|.++|++++.+. .
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~---~~~~~g~l~~~~~~~p~a~~~~~-~ 99 (277)
T 2po1_B 24 EGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFP---DTPNMGVMTTNVELVPLASPTFE-P 99 (277)
T ss_dssp TTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCCT---TCTTSCEEEEEEEECGGGCTTCC-S
T ss_pred cCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCCC---CCCCceEEEEEEEeCCCcccccc-C
Confidence 79999999999999999999999999999999999999999999 6666543 35788999999999999987643 2
Q ss_pred CCCCcchHHHHHHHHHHHHh--hhccCCC---C---ceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------
Q psy18119 88 PRGDRKTSEISLQLRQAVSA--AIMSEVH---P---RSQIDIFVEVLQADGGNFCACVNAATLALIDAG----------- 148 (263)
Q Consensus 88 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p---~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag----------- 148 (263)
++++.++.+++++|+++|++ +++++.| | .|.|+|+++||++|||+++|+++|+++||+|+|
T Consensus 100 g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~~ 179 (277)
T 2po1_B 100 GPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETG 179 (277)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTTC
T ss_pred CCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCCc
Confidence 35788999999999999998 6888876 4 379999999999999999999999999999999
Q ss_pred ----------CCccCceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEec--ccCChhHHHHHHHHHH
Q psy18119 149 ----------IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELS--QKLHLDHLPRVLDCAL 216 (263)
Q Consensus 149 ----------Ip~~~~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~--G~i~~~~l~~~i~~A~ 216 (263)
+||+++|+++|++++++.+++||+..||..+++.++|++ +..|+|+.+++. |+++.+++.+++++|.
T Consensus 180 ~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~A~ 258 (277)
T 2po1_B 180 EVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVETAF 258 (277)
T ss_dssp CEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHHHH
T ss_pred eeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 567999999998 5799999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18119 217 KGCADIHAILDTAIKQH 233 (263)
Q Consensus 217 ~~~~~i~~~i~~~l~~~ 233 (263)
+++++++++++++|++.
T Consensus 259 ~~~~~l~~~~~~~l~~~ 275 (277)
T 2po1_B 259 KKAEEIRKLILEAVEKA 275 (277)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999875
No 16
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1.1e-46 Score=332.74 Aligned_cols=218 Identities=19% Similarity=0.197 Sum_probs=199.9
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY-GPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 87 (263)
+|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ +|.++.. ..++++.|.|+|.++|+++++++ .
T Consensus 27 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~---~~~~~g~l~v~~~~~p~a~~~~~-~ 102 (277)
T 2je6_A 27 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYE---DTPNQGNLIVNVELLPLAYETFE-P 102 (277)
T ss_dssp GTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECCCT---TCTTCCEEEEEEEECTTSCTTCC-C
T ss_pred cCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCCCC---CCCCccEEEEEEEeCCccCcccc-c
Confidence 79999999999999999999999999999999999999999999 4555543 35788999999999999987653 3
Q ss_pred CCCCcchHHHHHHHHHHHHh--hhccCCC------CceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------
Q psy18119 88 PRGDRKTSEISLQLRQAVSA--AIMSEVH------PRSQIDIFVEVLQADGGNFCACVNAATLALIDAG----------- 148 (263)
Q Consensus 88 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~------p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag----------- 148 (263)
+++++++.+++++|+++|++ +++++.| +.|.|+|+++||++|||+++|+++|+++||++++
T Consensus 103 g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~~~ 182 (277)
T 2je6_A 103 GPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGI 182 (277)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC---C
T ss_pred CCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCcc
Confidence 45788999999999999999 4888887 3689999999999999999999999999999999
Q ss_pred ----------CCccCceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHHHHHHH
Q psy18119 149 ----------IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCAL 216 (263)
Q Consensus 149 ----------Ip~~~~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~i~~A~ 216 (263)
+||+++|+++|++++++.+++|||..||..+++.++|++ +..++|+++++.| +++.+++.++++.|.
T Consensus 183 ~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~~A~ 261 (277)
T 2je6_A 183 SVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAENTAR 261 (277)
T ss_dssp EEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHHHHH
T ss_pred eEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5678999999984 799999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy18119 217 KGCADIHAILDTAIK 231 (263)
Q Consensus 217 ~~~~~i~~~i~~~l~ 231 (263)
+++++++++++++++
T Consensus 262 ~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 262 STAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998874
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.3e-46 Score=331.31 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=199.7
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY-GPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 87 (263)
+|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ +|.+++. ..++++.|.|+|.++|+++++++ .
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~---~~~~~g~l~v~~~~~p~a~~~~~-~ 97 (271)
T 2wnr_A 22 NKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFP---DTPEMGVILTNSELLPMASPTFE-P 97 (271)
T ss_dssp TTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCCT---TCTTCCEEEEEEEECGGGCTTCC-C
T ss_pred cCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCCC---CCCCceEEEEEEEeCCccccccc-C
Confidence 79999999999999999999999999999999999999999999 5666543 35789999999999999987643 3
Q ss_pred CCCCcchHHHHHHHHHHHHh--hhccCCC---C---ceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcC-----------
Q psy18119 88 PRGDRKTSEISLQLRQAVSA--AIMSEVH---P---RSQIDIFVEVLQADGGNFCACVNAATLALIDAG----------- 148 (263)
Q Consensus 88 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p---~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dag----------- 148 (263)
+++++++.+++++|+++|++ +++++.| | .|.|+|+++||++|||+++|+++|+++||+|++
T Consensus 98 g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~~~ 177 (271)
T 2wnr_A 98 GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEV 177 (271)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETTEE
T ss_pred CCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence 45788999999999999999 6887877 4 489999999999999999999999999999999
Q ss_pred ---------CCccCceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHHHHHHHH
Q psy18119 149 ---------IPMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALK 217 (263)
Q Consensus 149 ---------Ip~~~~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~i~~A~~ 217 (263)
+||+++|+++|++++++.+++|||..||..+++.++|++ +..++|+++++.| +++.+++.++++.|.+
T Consensus 178 ~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~~~i~~i~~~g~~~~~~~~l~~~l~~a~~ 256 (271)
T 2wnr_A 178 VINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGV-TEEGSICAMQKGGEGPLTRDDVLKAVSIAVE 256 (271)
T ss_dssp EEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEEESSSCBCHHHHHHHHHHHHH
T ss_pred eeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 4678999999984 7999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy18119 218 GCADIHAILDTAIK 231 (263)
Q Consensus 218 ~~~~i~~~i~~~l~ 231 (263)
++++++++++++++
T Consensus 257 ~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 257 KVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 18
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=3.3e-46 Score=326.58 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=195.6
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcC-CCCCCCCcCCCCeEEEEEEEeeCCCCCccccCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIKVHGSVLINFQYSMAVFSTGERKTR 87 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp-~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~ 87 (263)
+|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++ .++.. ..++++++.|+|.++|+++++++ +
T Consensus 20 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~---~~~~~g~l~v~~~~~p~a~~~~~-~ 95 (259)
T 3m7n_G 20 DNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYP---DTPDRGVIIVNAELVPLASPTFE-P 95 (259)
T ss_dssp TTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECCCS---SCTTSCEEEEEEECCTTSCTTCC-S
T ss_pred cCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCCCC---CCCCceEEEEEEEeCCccccccc-C
Confidence 7999999999999999999999999999999999999999999964 33432 24678899999999999988764 3
Q ss_pred CCCCcchHHHHHHHHHHHHh--hhccCCC---C-c--eEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCC----------
Q psy18119 88 PRGDRKTSEISLQLRQAVSA--AIMSEVH---P-R--SQIDIFVEVLQADGGNFCACVNAATLALIDAGI---------- 149 (263)
Q Consensus 88 ~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p-~--~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagI---------- 149 (263)
+++++++.+++++|+++|++ +++++.| | + |.|+|+++||++|||+++|+++|+++||++++|
T Consensus 96 g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~ 175 (259)
T 3m7n_G 96 GPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED 175 (259)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred CCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCce
Confidence 46888999999999999999 7888876 6 3 899999999999999999999999999999999
Q ss_pred ---CccCceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHHHHHHHHHHHHHHH
Q psy18119 150 ---PMREYVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCALKGCADIHA 224 (263)
Q Consensus 150 ---p~~~~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~i~~A~~~~~~i~~ 224 (263)
||+++|+++|++++++.+++|||..||..+++.++|++ +..|+++++++.| .++.+++.++++.|.++++++++
T Consensus 176 ~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~ 254 (259)
T 3m7n_G 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITT-DKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLRE 254 (259)
T ss_dssp EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEE-CTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEE-eCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999 5678999999984 79999999999999999999998
Q ss_pred HHHH
Q psy18119 225 ILDT 228 (263)
Q Consensus 225 ~i~~ 228 (263)
++++
T Consensus 255 ~~~~ 258 (259)
T 3m7n_G 255 KFKE 258 (259)
T ss_dssp TTC-
T ss_pred HHhh
Confidence 8764
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.1e-46 Score=330.99 Aligned_cols=220 Identities=22% Similarity=0.236 Sum_probs=199.9
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 88 (263)
+|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++...+. ...++++.|.|+|.++|+++++++ .+
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~--~~~~~~g~l~v~~~~~p~a~~~~~-~g 98 (278)
T 2nn6_C 22 ENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS--TDAPDKGYVVPNVDLPPLCSSRFR-SG 98 (278)
T ss_dssp TSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCC--SSSTTCCCCEEEEECCSSSCTTSC-SS
T ss_pred cCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCC--CCCCCccEEEEEEEeCCccCcccc-CC
Confidence 799999999999999999999999999999999999999999999765322 124688999999999999988753 34
Q ss_pred CCCcchHHHHHHHHHHHHh--hhccCCC------CceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCC-----------
Q psy18119 89 RGDRKTSEISLQLRQAVSA--AIMSEVH------PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGI----------- 149 (263)
Q Consensus 89 ~~~~~~~~l~~~l~~~l~~--~i~l~~~------p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagI----------- 149 (263)
++++++++++++|+++|++ +++++.| +.|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 99 ~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~~ 178 (278)
T 2nn6_C 99 PPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETAL 178 (278)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSBC
T ss_pred CCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 5788999999999999995 6776654 46899999999999999999999999999999996
Q ss_pred -----------CccCceeEEEEEecCC-eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHHHHHH
Q psy18119 150 -----------PMREYVVACSASLAGD-TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLDCA 215 (263)
Q Consensus 150 -----------p~~~~~~avt~~~~~~-~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~i~~A 215 (263)
||+++|+++|++++++ .+++|||..||..+++.++|++ +..|+|+++++.| +++.+++.++++.|
T Consensus 179 ~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~~a 257 (278)
T 2nn6_C 179 AEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVM-DEEGKLCCLHKPGGSGLTGAKLQDCMSRA 257 (278)
T ss_dssp CCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEE-CTTCCEEEEEESCCSCCCHHHHHHHHHHH
T ss_pred eecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEE-cCCCcEEEEEccCCCCCCHHHHHHHHHHH
Confidence 7999999999999999 9999999999999999999999 5678999999998 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18119 216 LKGCADIHAILDTAIKQ 232 (263)
Q Consensus 216 ~~~~~~i~~~i~~~l~~ 232 (263)
.++++++++++++++++
T Consensus 258 ~~~~~~i~~~~~~~l~~ 274 (278)
T 2nn6_C 258 VTRHKEVKKLMDEVIKS 274 (278)
T ss_dssp HHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998865
No 20
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.5e-45 Score=330.33 Aligned_cols=244 Identities=20% Similarity=0.206 Sum_probs=208.7
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 88 (263)
+++|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++|...+.. ..+++++|.++|.++|+++.+++. +
T Consensus 37 ~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~~--~~~~~g~l~~~v~~~p~a~~~~~~-g 110 (358)
T 2nn6_A 37 EKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPKL--NRATEGILFFNLELSQMAAPAFEP-G 110 (358)
T ss_dssp TTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCCS--TTTTSCCEEEEEEECTTTCSSCCS-S
T ss_pred cCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCcc--cCCCCcEEEEEEEecCCccccccC-C
Confidence 799999999999999999999 8999999999999999999997643321 247788899999999999877543 3
Q ss_pred CCCcchHHHHHHHHHHHHhhh--ccCCC------CceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCC----------
Q psy18119 89 RGDRKTSEISLQLRQAVSAAI--MSEVH------PRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIP---------- 150 (263)
Q Consensus 89 ~~~~~~~~l~~~l~~~l~~~i--~l~~~------p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp---------- 150 (263)
++++++.+++++|+++|+++. +++.+ |.|.|+|+++||++|||+++||++|+++||+++++|
T Consensus 111 ~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~v~ 190 (358)
T 2nn6_A 111 RQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT 190 (358)
T ss_dssp STHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCCB
T ss_pred CCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCeeE
Confidence 577888999999999999954 44433 679999999999999999999999999999999999
Q ss_pred -------------ccCceeEEEEEec--CCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHHHH
Q psy18119 151 -------------MREYVVACSASLA--GDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRVLD 213 (263)
Q Consensus 151 -------------~~~~~~avt~~~~--~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~i~ 213 (263)
|+++|+++|+|++ ++.+|+|||..||..+++.++|++ +..|+|+++++.| +++.+++.+|++
T Consensus 191 i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~-t~~g~I~~lqk~G~~~ls~~~l~~~l~ 269 (358)
T 2nn6_A 191 LYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM-NKHREICTIQSSGGIMLLKDQVLRCSK 269 (358)
T ss_dssp CCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEE-ETTTEEEEEEEESCCCCCHHHHHHHHH
T ss_pred ecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEE-cCCCeEEEEEeCCCCCCCHHHHHHHHH
Confidence 8999999999987 679999999999999999999998 6788999999887 479999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCccccccceecCCccc
Q psy18119 214 CALKGCADIHAILDTAIKQHLIKVAGA--RGLGRKFQLGQLTGKKKEE 259 (263)
Q Consensus 214 ~A~~~~~~i~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 259 (263)
.|.++++++.++++++++++...+.+. .|+..-....+++--+.|+
T Consensus 270 ~A~~~~~~i~~~~~~~l~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~ 317 (358)
T 2nn6_A 270 IAGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEK 317 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCSHHHHSSSSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhcccCCchhhccccceehhcccc
Confidence 999999999999999999987766543 2444444444444433333
No 21
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=3.1e-45 Score=355.58 Aligned_cols=251 Identities=21% Similarity=0.276 Sum_probs=210.6
Q ss_pred cccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCCCCCCCCc--CCCCeEEEEEEEeeCCC
Q psy18119 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKSI--KVHGSVLINFQYSMAVF 79 (263)
Q Consensus 3 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~~--~~~~~~~l~v~~~~~~~ 79 (263)
.|.+ +|.|+|||.++|+|+|.+++|++++++|||+|++|+|+|+|+| .||.++.+..+ ..++++.+.++|+++||
T Consensus 324 ~il~--~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~ 401 (726)
T 4aid_A 324 GILD--TGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPY 401 (726)
T ss_dssp HHHS--SSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGG
T ss_pred HHhc--CCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCC
Confidence 4555 8999999999999999999999999999999999999999999 68887654311 23578999999999999
Q ss_pred CCccccCCCCCCcchHHHHHHHHHHHHhhhc-cCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEE
Q psy18119 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIM-SEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC 158 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~av 158 (263)
+++++++++.+++++.+++++++++|+++++ .+.||++ |+|+++||++|||+++|++||+++||+||||||+++++++
T Consensus 402 st~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaav 480 (726)
T 4aid_A 402 SVGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGI 480 (726)
T ss_dssp GGTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEE
T ss_pred cccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEE
Confidence 9998877777899999999999999999998 5889985 9999999999999999999999999999999999999999
Q ss_pred EEEecCC----eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 159 SASLAGD----TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIK 231 (263)
Q Consensus 159 t~~~~~~----~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~ 231 (263)
++|++++ .+++||+..|+..++..+.|+. +.+.|+.+++.| +|+.+.+.+++++|.++|.+|++.++++|.
T Consensus 481 svGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~--t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~ 558 (726)
T 4aid_A 481 AMGLILEQDGFAVLSDILGDEDHLGDMDFKVAG--TSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMD 558 (726)
T ss_dssp EEEEEECSSCEEEEESCCTTGGGGSSEEEEEEE--ETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCceEEEecCChhHHhcCCceEEEEe--cCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 5788999999999999999986 356699999987 469999999999999999999999999998
Q ss_pred HHHHHhhccCCCC-----ccccccceecCCcc
Q psy18119 232 QHLIKVAGARGLG-----RKFQLGQLTGKKKE 258 (263)
Q Consensus 232 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 258 (263)
++..+.....+.. +....|.++|.+|.
T Consensus 559 ~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~ 590 (726)
T 4aid_A 559 APRADVGDFAPKIETINIPTDKIREVIGSGGK 590 (726)
T ss_dssp SCCSSCCSSCCC--------------------
T ss_pred hhhhhhcccCCeEEEEeCCHHHHHhhcCCCch
Confidence 8765555555432 56667889998874
No 22
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=353.11 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=219.6
Q ss_pred cccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcC-CCCCCCCcC------CCCeEEEEEEEe
Q psy18119 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGP-RPVRNKSIK------VHGSVLINFQYS 75 (263)
Q Consensus 3 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp-~~~~~~~~~------~~~~~~l~v~~~ 75 (263)
+|.+ +|+|+|||.++|+|+|++++|++++++|||+|++|+|+|+|+|++| ..+....+. .++.+.+.++|.
T Consensus 312 ~il~--~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~ 389 (630)
T 3u1k_A 312 IVLN--EYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYE 389 (630)
T ss_dssp HHHH--HSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEE
T ss_pred HHhc--CCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEE
Confidence 4555 8999999999999999999999999999999999999999999984 333322111 256788999999
Q ss_pred eCCCCCccccCCCCCCcchHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCce
Q psy18119 76 MAVFSTGERKTRPRGDRKTSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYV 155 (263)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~ 155 (263)
++||+++++++++.+++++.+++++++++|+++++ +.||+ .|+|+++||++|||.++|+++|+++||+|+||||++++
T Consensus 390 ~~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~V 467 (630)
T 3u1k_A 390 FPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAV 467 (630)
T ss_dssp CCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred ecCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccce
Confidence 99999998876667889999999999999999998 56997 59999999999999999999999999999999999999
Q ss_pred eEEEEEecC------C-----eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHH
Q psy18119 156 VACSASLAG------D-----TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCAD 221 (263)
Q Consensus 156 ~avt~~~~~------~-----~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~ 221 (263)
+++++|+++ + .+++||+..|+..++..+.|+. +..+ |+.+++.| +|+.+.|.+++++|.+++.+
T Consensus 468 aavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~-t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~ 545 (630)
T 3u1k_A 468 AGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAG-TNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKE 545 (630)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEE-CSSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEe-cCCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999997 3 6999999999999999999998 4555 99999997 57999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCC-----CCccccccceecCCcc
Q psy18119 222 IHAILDTAIKQHLIKVAGARG-----LGRKFQLGQLTGKKKE 258 (263)
Q Consensus 222 i~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 258 (263)
|++++++++++...+.....+ .++....|.++|++|.
T Consensus 546 I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~ 587 (630)
T 3u1k_A 546 ILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGY 587 (630)
T ss_dssp HHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCCh
Confidence 999999999987665555555 3366777999999985
No 23
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-44 Score=322.42 Aligned_cols=224 Identities=18% Similarity=0.138 Sum_probs=181.8
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 88 (263)
+|+|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++|...+.. ..++++.+.+++.++|++....+ .+
T Consensus 21 ~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p~~--~~~~~g~~~~~ve~~~~~~~~~~-~g 94 (305)
T 2wp8_A 21 QNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYE--DRPFEGLFVISTEISPMAGSQFE-NG 94 (305)
T ss_dssp TTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CCS--SCTTCCEEEEEECCC-----------
T ss_pred hCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCCcc--cCCCCcEEEEEEEECCCCCcccc-CC
Confidence 899999999999999999999 8999999999999999999997543221 24567777788887888766542 23
Q ss_pred CCC-cchHHHHHHHHHHHH--hhhccCCC---Cc---eEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCC---------
Q psy18119 89 RGD-RKTSEISLQLRQAVS--AAIMSEVH---PR---SQIDIFVEVLQADGGNFCACVNAATLALIDAGIP--------- 150 (263)
Q Consensus 89 ~~~-~~~~~l~~~l~~~l~--~~i~l~~~---p~---~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp--------- 150 (263)
+++ .++.+++++|+++|+ .+|+++.| |. |.|+|+++||++|||+++|+++|+++||+|+|+|
T Consensus 95 ~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~~~ 174 (305)
T 2wp8_A 95 NITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQI 174 (305)
T ss_dssp ------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSSC
T ss_pred CCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCCce
Confidence 456 888999999999999 57888765 42 7899999999999999999999999999999999
Q ss_pred --------------ccCceeEEEEEecC--------------CeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc-
Q psy18119 151 --------------MREYVVACSASLAG--------------DTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ- 201 (263)
Q Consensus 151 --------------~~~~~~avt~~~~~--------------~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G- 201 (263)
|+++|+++|+|+++ +.+|+|||..||..+++.++|++ +..|+|+.+++.|
T Consensus 175 ~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~l~~~g~ 253 (305)
T 2wp8_A 175 IVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTL-NKNREVVQVSKAGG 253 (305)
T ss_dssp CBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEE-CTTSEEEEEEEEEE
T ss_pred EecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEE-cCCCcEEEEEecCC
Confidence 77899999999997 78999999999999999999999 5688999999997
Q ss_pred -cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18119 202 -KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239 (263)
Q Consensus 202 -~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~ 239 (263)
+++.+++.+++++|.+++++|+++++++++++..++.+
T Consensus 254 ~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 292 (305)
T 2wp8_A 254 LPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNK 292 (305)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999998887654
No 24
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.5e-45 Score=327.10 Aligned_cols=223 Identities=22% Similarity=0.254 Sum_probs=198.5
Q ss_pred CCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCC
Q psy18119 9 GGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRP 88 (263)
Q Consensus 9 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~ 88 (263)
+++|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+++...+. ...++++++.++|.++|++++.+.++
T Consensus 34 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p~--~~~~~~g~l~~~v~~~p~a~~~~~~r- 110 (305)
T 2nn6_E 34 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPK--LEKPNEGYLEFFVDCSASATPEFEGR- 110 (305)
T ss_dssp TTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCCC--SSSCSSCCEEEECCCCTTTCSSCCTT-
T ss_pred cCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCCC--cCCCCceEEEEEEEeCCCcCccccCC-
Confidence 799999999999999999999999999999999999999999999754222 23567888999999999988765433
Q ss_pred CCCcchHHHHHHHHHHHHh--hhccC---CCC---ceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccC-------
Q psy18119 89 RGDRKTSEISLQLRQAVSA--AIMSE---VHP---RSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMRE------- 153 (263)
Q Consensus 89 ~~~~~~~~l~~~l~~~l~~--~i~l~---~~p---~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~------- 153 (263)
.+++++.+++++|+++|++ +|+++ .+| .|.|+|+++||++|||+++|+++|+++||++++||+.+
T Consensus 111 ~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~~ 190 (305)
T 2nn6_E 111 GGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEG 190 (305)
T ss_dssp STHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC---
T ss_pred CCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCCC
Confidence 2457889999999999999 67777 456 36799999999999999999999999999999999653
Q ss_pred --------------------ceeEEEEEecCCeeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc--cCChhHHHHH
Q psy18119 154 --------------------YVVACSASLAGDTPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ--KLHLDHLPRV 211 (263)
Q Consensus 154 --------------------~~~avt~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G--~i~~~~l~~~ 211 (263)
+|+++|++++++.+|+|||..||..+++.++|++ +..++|+++++.| .++.+++.++
T Consensus 191 ~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~i~~~g~~~l~~~~l~~~ 269 (305)
T 2nn6_E 191 SKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSV-TSKGVVTCMRKVGKGSLDPESIFEM 269 (305)
T ss_dssp ---EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECC-CSSSCCCEEEEEESSCBCHHHHHHH
T ss_pred ceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHH
Confidence 4789999999999999999999999999999999 4578899999987 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 212 LDCALKGCADIHAILDTAIKQHLI 235 (263)
Q Consensus 212 i~~A~~~~~~i~~~i~~~l~~~~~ 235 (263)
++.|.++++++.+++++++++...
T Consensus 270 l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 270 METGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987665
No 25
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=1.2e-44 Score=354.13 Aligned_cols=251 Identities=21% Similarity=0.281 Sum_probs=211.6
Q ss_pred ccccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCCCCCCCCc--CCCCeEEEEEEEeeCC
Q psy18119 2 DLLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVY-GPRPVRNKSI--KVHGSVLINFQYSMAV 78 (263)
Q Consensus 2 e~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~--~~~~~~~l~v~~~~~~ 78 (263)
++|.+ +++|+|||.++|+|+|.+++|++++++|||+|++|+|+|+|+|+ ||.++.++.+ ..++.+.+.++|+++|
T Consensus 348 ~~i~~--~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P 425 (757)
T 1e3p_A 348 ERVIA--EKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPP 425 (757)
T ss_dssp HHHHH--TCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCG
T ss_pred HHHhc--CCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCC
Confidence 34556 89999999999999999999999999999999999999999995 8877654311 2567899999999999
Q ss_pred CCCccccCCCCCCcchHHHHHHHHHHHHhhhc-cCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeE
Q psy18119 79 FSTGERKTRPRGDRKTSEISLQLRQAVSAAIM-SEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVA 157 (263)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~a 157 (263)
|+++++++++.+++++.+++++++++|+++++ .+.|||+ |+|+++||++|||+++|+++|+++||+|+||||++++++
T Consensus 426 ~st~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaa 504 (757)
T 1e3p_A 426 YSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAG 504 (757)
T ss_dssp GGGTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEE
T ss_pred cccccccCCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEE
Confidence 99998876667899999999999999999998 6889985 999999999999999999999999999999999999999
Q ss_pred EEEEec----CC----eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEeccc---CChhHHHHHHHHHHHHHHHHHHHH
Q psy18119 158 CSASLA----GD----TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAIL 226 (263)
Q Consensus 158 vt~~~~----~~----~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~---i~~~~l~~~i~~A~~~~~~i~~~i 226 (263)
+|++++ ++ .+++||+..|+..++..++|+. +.++|+.+++.|. ++.+.+.+|++.|.+++.+|++.|
T Consensus 505 vs~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~--t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m 582 (757)
T 1e3p_A 505 IAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAG--TKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVM 582 (757)
T ss_dssp EEEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEEE--CSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCccceeEEeCCCHHHHhccCceEEEEe--cCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 43 7899999999999999999985 4688999999875 599999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCC-----ccccccceecCCcc
Q psy18119 227 DTAIKQHLIKVAGARGLG-----RKFQLGQLTGKKKE 258 (263)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 258 (263)
+++|.++ .+...+.+.. +.-..|+++|++|.
T Consensus 583 ~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk 618 (757)
T 1e3p_A 583 MEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQ 618 (757)
T ss_dssp HHHCSSC-CCCCTTSCBCCCC----------------
T ss_pred HHHhccc-ccccccCceeEEEEEChHHeehcccccce
Confidence 9999887 5555554432 55677889988753
No 26
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=1.3e-44 Score=341.87 Aligned_cols=227 Identities=23% Similarity=0.354 Sum_probs=197.7
Q ss_pred cccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCCCCCCCC--cCCCCeEEEEEEEeeCCC
Q psy18119 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKS--IKVHGSVLINFQYSMAVF 79 (263)
Q Consensus 3 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~--~~~~~~~~l~v~~~~~~~ 79 (263)
.|.+ +|+|+|||.++|+|+|.+++|+++++||||+|++|+|+|+|+| .||.++.+.. ...++++.+.++|+++||
T Consensus 308 ~il~--~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~ 385 (549)
T 3gme_A 308 RVLA--GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPY 385 (549)
T ss_dssp HHHH--TCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGG
T ss_pred HHhc--CCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCC
Confidence 4555 8999999999999999999999999999999999999999999 5886654321 123578899999999999
Q ss_pred CCccccCCCCCCcchHHHHHHHHHHHHhhhc-cCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEE
Q psy18119 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIM-SEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC 158 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~av 158 (263)
+++++++++.+++++.+++++++++|+++|+ .++||++ |+|+++||++|||.++|++||+++||+|+||||+++++++
T Consensus 386 st~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaav 464 (549)
T 3gme_A 386 SVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 (549)
T ss_dssp GTTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEE
T ss_pred CcCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEE
Confidence 9998776667889999999999999999999 5789985 9999999999999999999999999999999999999999
Q ss_pred EEEecCC----eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEeccc---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 159 SASLAGD----TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCADIHAILDTAIK 231 (263)
Q Consensus 159 t~~~~~~----~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~---i~~~~l~~~i~~A~~~~~~i~~~i~~~l~ 231 (263)
++|++++ .+++||+..|+..++..+.|+. +.+.++.+++++. |+.+++.+++++|.+++.+|++.+++++.
T Consensus 465 s~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~--t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~ 542 (549)
T 3gme_A 465 AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAG--SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 (549)
T ss_dssp EEEEEEETTEEEEEESCCHHHHHHSSEEEEEEE--CSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCceEEEecCChHHHccCCceEEEEe--cCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 7899999999999999999997 3456889988754 79999999999999999999999999987
Q ss_pred HHH
Q psy18119 232 QHL 234 (263)
Q Consensus 232 ~~~ 234 (263)
+..
T Consensus 543 ~pr 545 (549)
T 3gme_A 543 APR 545 (549)
T ss_dssp SCC
T ss_pred hhh
Confidence 643
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=6.1e-44 Score=347.91 Aligned_cols=251 Identities=22% Similarity=0.320 Sum_probs=192.9
Q ss_pred cccCCCCCccCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCCCCCCCC--cCCCCeEEEEEEEeeCCC
Q psy18119 3 LLTEYGGGLRNDGRRGHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAV-YGPRPVRNKS--IKVHGSVLINFQYSMAVF 79 (263)
Q Consensus 3 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~--~~~~~~~~l~v~~~~~~~ 79 (263)
++.+ +++|+|||.++|+|+|.+++|++++++|||+|++|+|+|+|+| .||.++++.. ...++.+.+.++|.++||
T Consensus 314 ~i~~--~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~ 391 (723)
T 3cdi_A 314 RVLA--GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPY 391 (723)
T ss_dssp HHHT--TCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGG
T ss_pred HHhc--cCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCC
Confidence 4566 8999999999999999999999999999999999999999999 5887643320 113566788899999999
Q ss_pred CCccccCCCCCCcchHHHHHHHHHHHHhhhcc-CCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEE
Q psy18119 80 STGERKTRPRGDRKTSEISLQLRQAVSAAIMS-EVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVAC 158 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~av 158 (263)
+++++++.+.+++++.+++++++++|++++++ +.|||+ |+|+++||++|||+++|+++|+++||+|+||||+++++++
T Consensus 392 st~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaav 470 (723)
T 3cdi_A 392 SVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 470 (723)
T ss_dssp GGTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEE
T ss_pred CccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeE
Confidence 99887655557788889999999999999996 779974 9999999999999999999999999999999999999999
Q ss_pred EEEecC-C---eeEecCCchhhhcCCCeEEEEEeCCCCcEEEEEecc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 159 SASLAG-D---TPLVDISHLEETLGGPNLTVAALPLSGKVAVMELSQ---KLHLDHLPRVLDCALKGCADIHAILDTAIK 231 (263)
Q Consensus 159 t~~~~~-~---~~lvDPt~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G---~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~ 231 (263)
|+++++ + .+|+||+..||..+++.++|+. +..| |+.+++.| +|+.++|.+++++|.+++.+|++.|+++|.
T Consensus 471 s~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~-t~~g-I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~ 548 (723)
T 3cdi_A 471 AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAG-SRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 548 (723)
T ss_dssp EEEEEEETTEEEEESSCCGGGGGGCSEEEEEEE-CSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCceEEEECCChHHhhhccceeeecc-cCCc-eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999996 3 4999999999999999999997 4455 99999984 589999999999999999999999999999
Q ss_pred HHHHHhhccCCCC-----ccccccceecCCcc
Q psy18119 232 QHLIKVAGARGLG-----RKFQLGQLTGKKKE 258 (263)
Q Consensus 232 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 258 (263)
++..+...+.+.. +....|.++|++|.
T Consensus 549 ~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk 580 (723)
T 3cdi_A 549 APRGDISEFAPRIHTIKINPDKIKDVIGKGGS 580 (723)
T ss_dssp --------------------------------
T ss_pred hcchhccccCceEEEEEECHHHhcccccccce
Confidence 9887777666533 55666788888774
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-45 Score=313.48 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=167.6
Q ss_pred CCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccccCCCCCCcchHHH
Q psy18119 18 GHELRKIRCRLGVFSQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGERKTRPRGDRKTSEI 97 (263)
Q Consensus 18 ~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~l 97 (263)
++|+|++++++|++++++|||+|++|+|+|+|+|+||.++++. ...+++++|+++|. |++. +++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~-~~~~~~~~l~v~~~--p~~G-------~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHAS-KASDEAMTLDISYR--ANCG-------DNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCCSS--CCCC---------CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCccc-ccCCceEEEEEEEc--CCCC-------CCCHH--HH
Confidence 5799999999999999999999999999999999999876654 34678888877765 4431 12222 78
Q ss_pred HHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChhHHHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecCCchhhh
Q psy18119 98 SLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNFCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISHLEET 177 (263)
Q Consensus 98 ~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~~a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDPt~~Ee~ 177 (263)
+++|++.|+++++++.||+|.|+|+++||++||++++|++||+++||+|+||||++++++++++++++.+++|||..|+.
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEE---eCCCCcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18119 178 LGGPNLTVAA---LPLSGKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKV 237 (263)
Q Consensus 178 ~~~~~l~v~~---~~~~~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~ 237 (263)
.+++.++|++ +++.++|+++++.|.++.+++.++++.|.++++++.++++++++++..+-
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~ 212 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVD 212 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999 66679999999999999999999999999999999999999999887643
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=280.04 Aligned_cols=213 Identities=17% Similarity=0.205 Sum_probs=187.9
Q ss_pred CCcceEEEeCCCCC-CceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCcc-----ccCCCCCCcc
Q psy18119 20 ELRKIRCRLGVFSQ-SDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGE-----RKTRPRGDRK 93 (263)
Q Consensus 20 e~R~i~i~~g~l~~-a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 93 (263)
.-|++.+++|.+++ |+|||++++|+|+|+|+|++|.++++. +++.|.|+|+..+++.+. .++.++++++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~-----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS-----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS-----SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC-----CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 35899999999986 999999999999999999999886642 677899999988887642 2233468889
Q ss_pred hHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCCh--hHHHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecC
Q psy18119 94 TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN--FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDI 171 (263)
Q Consensus 94 ~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~--~~a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDP 171 (263)
+.+++++|+|.|+++++++.||. ++|+|+||++||+. ..+|+||+++||++++|||++.+++|+++++++.+|+||
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~--~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYD--TQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCC--EEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCc--eEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 99999999999999999888887 55789999999998 779999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEeCCCCcEEEEEeccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18119 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQK-LHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240 (263)
Q Consensus 172 t~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G~-i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 240 (263)
|..|++.++..++|+++ ..++|++++..|. ++++++.++++.|.++++.+++++++++++.....+.+
T Consensus 166 t~~E~~~s~~dl~Va~t-~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAGA-PKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTP 234 (630)
T ss_dssp CHHHHHTEEEEEEEEEE-TTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHhhCCceEEEEEc-cCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccC
Confidence 99999999999999995 5688999999886 99999999999999999999999999988877554444
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=7.9e-30 Score=241.11 Aligned_cols=213 Identities=13% Similarity=0.159 Sum_probs=180.6
Q ss_pred CcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccc-----cCCCCCCcch
Q psy18119 21 LRKIRCRLGVFS-QSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGER-----KTRPRGDRKT 94 (263)
Q Consensus 21 ~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-----~~~~~~~~~~ 94 (263)
-|++.+++|.+. +|+||+++++|+|+|+|+|+++.+++.. .+.+.|.|+|....++.+.. ++.++++.++
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g----~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC----CCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 589999999886 5999999999999999999998765542 35677999997544443322 2335688999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChh--HHHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecCC
Q psy18119 95 SEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF--CACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDIS 172 (263)
Q Consensus 95 ~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~--~a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDPt 172 (263)
.+++++|.|.|+++++...++. ++|+++||+.||+.. .+++||+++||+.++||+++.+.+|++|++++.+++|||
T Consensus 89 ~l~~RlIdR~lRplfp~~~~~e--vqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnPt 166 (549)
T 3gme_A 89 TLIARLIDRPIRPLFPEGFVNE--VQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT 166 (549)
T ss_dssp HHHHHHHHHHHGGGSCTTCCSC--EEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESCC
T ss_pred hHHHHHhCCccccccccCCccc--EEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECCC
Confidence 9999999999999998776554 888999999998663 578999999999999999999999999999999999999
Q ss_pred chhhhcCCCeEEEEEeCCCCcEEEEEecc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy18119 173 HLEETLGGPNLTVAALPLSGKVAVMELSQ-KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGAR 241 (263)
Q Consensus 173 ~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G-~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~~~ 241 (263)
..|++.++..++|+.. .+.|++++..| .++.+++.++++.|.++++.+.+++++++++.....+.+.
T Consensus 167 ~~e~~~s~~dl~va~t--~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~~~~~~~ 234 (549)
T 3gme_A 167 QDELKESKLDLVVAGT--EAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ 234 (549)
T ss_dssp TTTTTTCSBCEEEEEC--SSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHhhCceEEEEEec--CCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 9999999999999983 34599999886 6999999999999999999999999999988765544443
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.97 E-value=2.7e-29 Score=244.06 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=180.3
Q ss_pred CCcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCcc-----ccCCCCCCcc
Q psy18119 20 ELRKIRCRLGVFS-QSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGE-----RKTRPRGDRK 93 (263)
Q Consensus 20 e~R~i~i~~g~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 93 (263)
.-|++.+++|.+. +|+||+++++|+|+|+|+|+++.++++. .++++|.++|....++.+. .++.++++.+
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g----~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG----QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT----CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC----CCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 3689999999886 5999999999999999999998766542 3667799999754333321 1233568899
Q ss_pred hHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCChh--HHHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecC
Q psy18119 94 TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGNF--CACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDI 171 (263)
Q Consensus 94 ~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~~--~a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDP 171 (263)
+.+++++|.|.|+++++...++ .++|+|+||+.||+.. .+|+||+++||++++||+++.+.+|++|++++.+++||
T Consensus 102 ~~li~RlIdR~lRplf~~~~~~--evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vldP 179 (726)
T 4aid_A 102 ETLVSRLIDRPIRPLFVKGFKN--EVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHHGGGBCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEESC
T ss_pred hhhHHHHhCCccccccccCCcc--ceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEECC
Confidence 9999999999999999877655 4888999999999753 57999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEeCCCCcEEEEEecc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18119 172 SHLEETLGGPNLTVAALPLSGKVAVMELSQ-KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAG 239 (263)
Q Consensus 172 t~~Ee~~~~~~l~v~~~~~~~~i~~i~~~G-~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~ 239 (263)
|..|++.++..++|+.. .. .|++++..+ .|+.+++.++++.|.++++.+.+++++++++.....+.
T Consensus 180 t~~E~~~s~~dl~va~t-~~-~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~~k~~ 246 (726)
T 4aid_A 180 TLDEMKESKMDLVVAGT-AD-AVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAKEPFA 246 (726)
T ss_dssp CHHHHHTCSEEEEEEEC-SS-CEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCCCCC
T ss_pred CHHHHhhCceeEEEEEe-CC-eEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999983 33 499999886 69999999999999999999999999998876544333
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=4.3e-29 Score=243.56 Aligned_cols=211 Identities=13% Similarity=0.156 Sum_probs=180.1
Q ss_pred cceEEEeCCC-CCCceeEEEEeCCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCccc-----cCCCCCCcchH
Q psy18119 22 RKIRCRLGVF-SQSDGSAYIEQGNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGER-----KTRPRGDRKTS 95 (263)
Q Consensus 22 R~i~i~~g~l-~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-----~~~~~~~~~~~ 95 (263)
|++.+++|.+ .+|+||+++++|+|+|+|+|+++.++++. .+++.++|+|....++.+.. ++.+++++++.
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~----~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----CCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC----CCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 4899999988 47999999999999999999998766542 36778999999765554432 23446899999
Q ss_pred HHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCCh-hH-HHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecCCc
Q psy18119 96 EISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN-FC-ACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDISH 173 (263)
Q Consensus 96 ~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~-~~-a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDPt~ 173 (263)
+++++|+|.|+++++.+.++ .++|+++||++||+. .+ +|+|||++||+.++||+.+.+++|++|++++.+|+|||.
T Consensus 96 l~sRlIdR~lRplfp~~~~~--~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccCcc--eEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 99999999999998866544 599999999999996 44 999999999999999999999999999999999999999
Q ss_pred hhhhcCCCeEEEEEeCCCCcEEEEEecc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18119 174 LEETLGGPNLTVAALPLSGKVAVMELSQ-KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240 (263)
Q Consensus 174 ~Ee~~~~~~l~v~~~~~~~~i~~i~~~G-~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 240 (263)
.|++.++..++|+. +...+++++..+ .++++++.++++.|.+.++.+.+++++++++.....+.+
T Consensus 174 ~e~~~s~~~lvvag--t~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 239 (723)
T 3cdi_A 174 DELKESKLDLVVAG--TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDW 239 (723)
T ss_dssp TGGGGCSEEEEEEE--CSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHhCCceEEEEc--cCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 99999999999997 345599999776 499999999999999999999999999988765544444
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.96 E-value=1.6e-28 Score=240.27 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=179.4
Q ss_pred CcceEEEeCCC-CCCceeEEEEe-CCeEEEEEEEcCCCCCCCCcCCCCeEEEEEEEeeCCCCCcc-----ccCCCCCCcc
Q psy18119 21 LRKIRCRLGVF-SQSDGSAYIEQ-GNTKVLAAVYGPRPVRNKSIKVHGSVLINFQYSMAVFSTGE-----RKTRPRGDRK 93 (263)
Q Consensus 21 ~R~i~i~~g~l-~~a~GSa~v~~-G~T~Vi~~V~gp~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-----~~~~~~~~~~ 93 (263)
-|++.+++|.+ .+|+||+++++ |+|+|+|+|++|.++++. .+++.|+|+|....++.+. .+|.++++.+
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~----~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ----LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTT----CSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCC----CCCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 48999999997 57999999999 999999999998776542 3567799999755444321 2334568899
Q ss_pred hHHHHHHHHHHHHhhhccCCCCceEEEEEEEEEeCCCCh--hHHHHHHHHHHHHHcCCCccCceeEEEEEecCCeeEecC
Q psy18119 94 TSEISLQLRQAVSAAIMSEVHPRSQIDIFVEVLQADGGN--FCACVNAATLALIDAGIPMREYVVACSASLAGDTPLVDI 171 (263)
Q Consensus 94 ~~~l~~~l~~~l~~~i~l~~~p~~~I~v~v~VL~~dG~~--~~a~i~Aa~~AL~dagIp~~~~~~avt~~~~~~~~lvDP 171 (263)
+++++++|.|.|+++++... +..|+|+|+||+.||+. ..+|+|||++||++++|||++.+.||++|++++.+++||
T Consensus 112 e~l~~RlIdR~LRplfp~~~--~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGL--RNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTB--CEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCC--CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 99999999999999987653 23699999999999976 889999999999999999999999999999999999999
Q ss_pred CchhhhcCCCeEEEEEeC---CCCcEEEEEe-------------cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 172 SHLEETLGGPNLTVAALP---LSGKVAVMEL-------------SQKLHLDHLPRVLDCALKGCADIHAILDTAIKQHLI 235 (263)
Q Consensus 172 t~~Ee~~~~~~l~v~~~~---~~~~i~~i~~-------------~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~ 235 (263)
|..|++.++..++|+... ..+.|.+++. .+.++.+++.++++.|.++++.+.+++++++++...
T Consensus 190 t~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~~ 269 (757)
T 1e3p_A 190 THTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAK 269 (757)
T ss_dssp CHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999842 1667899998 347999999999999999999999999998876544
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=53.15 E-value=13 Score=22.74 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18119 202 KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVA 238 (263)
Q Consensus 202 ~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~ 238 (263)
.++.+.+..+-.+|.+......+++++++.++..+..
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 4688899999999999999999999999999987653
No 35
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=41.38 E-value=13 Score=23.60 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 203 LHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236 (263)
Q Consensus 203 i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~ 236 (263)
++++...++-..|....+.+..+++++|++++.+
T Consensus 20 Id~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~ 53 (56)
T 2kel_A 20 MDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_dssp EEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999765
No 36
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=36.82 E-value=1.1e+02 Score=22.37 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=49.7
Q ss_pred eEEEEEecCC-eeEecCCchhhhcCCCeEEEEEe----CCC-CcEEEEEecccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 156 VACSASLAGD-TPLVDISHLEETLGGPNLTVAAL----PLS-GKVAVMELSQKLHLDHLPRVLDCALKGCADIHAILDTA 229 (263)
Q Consensus 156 ~avt~~~~~~-~~lvDPt~~Ee~~~~~~l~v~~~----~~~-~~i~~i~~~G~i~~~~l~~~i~~A~~~~~~i~~~i~~~ 229 (263)
.+++|-+.+. .-+-++-.. ....+..+.+|.. |.. .-.+.+++.|..+.+.|.++++--.+.|..+.+.+.++
T Consensus 21 n~~~f~i~~EDHTLgNlLr~-~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a 99 (115)
T 1xpp_A 21 NSITVEMINYDNTLLRTLVE-EILKDDQVDEARYYIKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKE 99 (115)
T ss_dssp SEEEEEEESCCHHHHHHHHH-HHTTCTTEEEEEEECSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCchhHHHHHH-HHhcCCCeEEEEeecCCCCCCccEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555533 223333222 2334445555543 222 34678888876677889999999999999999988888
Q ss_pred HHHHHH
Q psy18119 230 IKQHLI 235 (263)
Q Consensus 230 l~~~~~ 235 (263)
+++...
T Consensus 100 ~~~~~~ 105 (115)
T 1xpp_A 100 FQRYES 105 (115)
T ss_dssp HHHHHH
T ss_pred HHHhch
Confidence 876643
No 37
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=35.63 E-value=1.4e+02 Score=22.72 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=32.9
Q ss_pred hhhcCCCeEEEEEeCCCCcEEEEEeccc----CChhHHHHHHHHHHHHHHH
Q psy18119 175 EETLGGPNLTVAALPLSGKVAVMELSQK----LHLDHLPRVLDCALKGCAD 221 (263)
Q Consensus 175 Ee~~~~~~l~v~~~~~~~~i~~i~~~G~----i~~~~l~~~i~~A~~~~~~ 221 (263)
|..+..+.++|.+ +.+++|..++.+=. -+.+.++++|-.|...+.+
T Consensus 70 eg~sGgGlVkVtv-nG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ 119 (143)
T 1ybx_A 70 EASAGGGAVTVVA-TGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALR 119 (143)
T ss_dssp EEEETTTTEEEEE-ETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCEEEEEE-ecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 3445678899998 67999999998743 3456777777777665553
No 38
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=25.76 E-value=42 Score=19.44 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=27.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18119 202 KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIK 236 (263)
Q Consensus 202 ~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~ 236 (263)
.++.+.+.++=.+|......-.+++++++..+..+
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45777888888888887778889999999888753
No 39
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=21.41 E-value=60 Score=19.54 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=30.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18119 202 KLHLDHLPRVLDCALKGCADIHAILDTAIKQHLIKVAGA 240 (263)
Q Consensus 202 ~i~~~~l~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~~~ 240 (263)
.++.+...++=.+|......-+.++++++..+....-..
T Consensus 9 rl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~e~~ 47 (52)
T 2gpe_A 9 KLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENS 47 (52)
T ss_dssp EEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred ECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456677778888888888888999999999998765443
No 40
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.22 E-value=2.5e+02 Score=20.19 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=32.7
Q ss_pred hhhcCCCeEEEEEeCCCCcEEEEEeccc---CChhHHHHHHHHHHHHHHH
Q psy18119 175 EETLGGPNLTVAALPLSGKVAVMELSQK---LHLDHLPRVLDCALKGCAD 221 (263)
Q Consensus 175 Ee~~~~~~l~v~~~~~~~~i~~i~~~G~---i~~~~l~~~i~~A~~~~~~ 221 (263)
|..+..+.++|.+ +.+++|..++.+=. -+.+.+.+++-.|...+.+
T Consensus 37 ~g~sggG~V~Vt~-~G~~ev~~i~Idp~~~~~d~E~LedlI~aA~ndA~~ 85 (112)
T 1j8b_A 37 TGESGAGLVKITI-NGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVR 85 (112)
T ss_dssp EEEEGGGTEEEEE-ETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCEEEEEE-ecCceEEEEEECHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3345567888988 67899999998743 3566778877777666553
Done!